DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004523 mmu-miR-29b* 73666 Thoc3 auUUGGUGGUAUACUUUGGUcg || | | | |||||| aaAAAAAAAAAAAAAAACCAaa 3 21 222 243 [mm9:13:54561192-54561213:-] 0.5144 124 0 -5.13 -0.1706 MIMAT0000143 mmu-miR-9* 73666 Thoc3 ugaaagccAAUAGAUCGAAAUa | | ||||||||| uggagaacUGAGCUAGCUUUAc 2 15 317 338 [mm9:13:54561097-54561118:-] 0.5012 154 7 -11.63 -0.2844 MIMAT0000152 mmu-miR-140* 73666 Thoc3 ggcACCAAGAUGGGACACCAu | | |:|| ||||||| agcUAGCUUUA--CUGUGGUg 2 19 327 345 [mm9:13:54561090-54561108:-] 0.5012 147 7 -15.92 -0.3161 MIMAT0000218 mmu-miR-24-1* 73666 Thoc3 ugacuAUAGUC-GAGUCAUCCGUg | |::| ||: ||||||| uagucUUUUGGACUU-GUAGGCAc 2 19 169 191 [mm9:13:54561244-54561266:-] 0.5276 147 7 -19.92 -0.6770 MIMAT0004542 mmu-miR-191* 73666 Thoc3 cccUUGCU-UUAG---GUUCACGUCg ||:|| :||: ||||||||| gcuAAUGAGGAUUUUGCAAGUGCAGg 2 20 454 479 [mm9:13:54560956-54560981:-] 0.5012 157 7 -19.94 -0.5021 MIMAT0000230 mmu-miR-199a-3p 73666 Thoc3 auUGGUUACA-CGUCUGAU-GACa || || | |:|||||| ||| gaACAAAACUGGUAGACUAUCUGc 2 21 513 536 [mm9:13:54560899-54560922:-] 0.5011 127 0 -16.84 -0.3436 MIMAT0004620 mmu-let-7a* 73666 Thoc3 ccuuUCUGUCA-UCUAACAUAUc |||| | ||||||| gugcAGACCUUCCUUUUGUAUAg 2 19 139 161 [mm9:13:54561274-54561296:-] 0.5191 141 7 -12.67 -0.4670 MIMAT0004621 mmu-let-7b* 73666 Thoc3 cccuuccgucauccAACAUAUc ||||||| ugcagaccuuccuuUUGUAUAg 2 9 140 161 [mm9:13:54561274-54561295:-] 0.5191 140 7 -11.28 -0.4737 MIMAT0005439 mmu-let-7c-2* 73666 Thoc3 ccuuUCUGUCA-UCUAACAUAUc |||| | ||||||| gugcAGACCUUCCUUUUGUAUAg 2 19 139 161 [mm9:13:54561274-54561296:-] 0.5191 141 7 -12.67 -0.4670 MIMAT0004623 mmu-let-7f* 73666 Thoc3 cccuuccguuaucuAACAUAUc ||||||| ugcagaccuuccuuUUGUAUAg 2 9 140 161 [mm9:13:54561274-54561295:-] 0.5191 140 7 -10.14 -0.4737 MIMAT0005440 mmu-miR-24-2* 73666 Thoc3 ugACAAAGUC-GAGUCAUCCGUg | |||::| ||: ||||||| agUCUUUUGGACUU-GUAGGCAc 2 21 170 191 [mm9:13:54561244-54561265:-] 0.5276 157 7 -18.13 -0.6733 MIMAT0004630 mmu-miR-26b* 73666 Thoc3 cucgguucauuaccUCUUGUCc ||||||| agacuaucugccuaAGAACAGa 2 9 526 547 [mm9:13:54560888-54560909:-] 0.5011 140 7 -9.99 -0.3426 MIMAT0004660 mmu-miR-19a* 73666 Thoc3 caucacguugauacGUUUUGAu ||||||| guucucuagaggaaCAAAACUg 2 9 502 523 [mm9:13:54560912-54560933:-] 0.5011 140 7 -11.54 -0.2831 MIMAT0004667 mmu-miR-199b 73666 Thoc3 auUGGUUACA-CGUCUGAU-GACa || || | |:|||||| ||| gaACAAAACUGGUAGACUAUCUGc 2 21 513 536 [mm9:13:54560899-54560922:-] 0.5011 127 0 -16.84 -0.3436 MIMAT0004781 mmu-miR-532-3p 73666 Thoc3 acGUUCGGAACCCACACC-CUCc | |||:|| ||||| ||| agCUAGCUUU-ACUGUGGUGAGc 2 21 327 348 [mm9:13:54561087-54561108:-] 0.5012 122 0 -19.45 -0.1672 MIMAT0004187 mmu-miR-744 73666 Thoc3 acgacAAUCGGGAUCGGGG-CGu |||||:| |||||| || ccacaUUAGCUCCAGCCCCAGCc 2 18 356 378 [mm9:13:54561057-54561079:-] 0.5012 137 0 -24.08 -0.1207 MIMAT0003732 mmu-miR-668 73666 Thoc3 ccaucACCCGGCUCGGCUCAC-UGu | ||:| :||:||||| || aaucuUUGGUCAGGCUGAGUGUACc 2 20 273 297 [mm9:13:54561138-54561162:-] 0.5012 131 0 -22.21 -0.3834 MIMAT0003733 mmu-miR-665 73666 Thoc3 ucccUGGAGUCGGAGGACCa :|| || |||||||| cccaGCCCCA-CCUCCUGGg 2 17 378 396 [mm9:13:54561039-54561057:-] 0.5012 154 7 -21.91 -0.1372 MIMAT0003736 mmu-miR-670 73666 Thoc3 aagUGGUGUAUGUGAGUCCCUa ||:::| | :||||||| augACUGUA-CCUUUCAGGGAg 2 20 62 82 [mm9:13:54561353-54561373:-] 0.4881 149 7 -17.66 -0.2242 MIMAT0003461 mmu-miR-683 73666 Thoc3 cuccuGUGUCGAAUGUCG-UCc |:| ||| ||||| || cucccCGCUGCUGACAGCUAGc 2 17 434 455 [mm9:13:54560980-54561001:-] 0.5012 124 0 -16.00 -0.5850 MIMAT0003476 mmu-miR-669b 73666 Thoc3 uguacguguacgugUGUUUUGa ||||||| gguucucuagaggaACAAAACu 2 9 501 522 [mm9:13:54560913-54560934:-] 0.5011 140 7 -11.51 -0.2632 MIMAT0003476 mmu-miR-669b 73666 Thoc3 uguacguguacguguGUUUUGa |||||| accaaaccaaaaaacCAAAACc 2 8 238 259 [mm9:13:54561176-54561197:-] 0.5012 120 6 -7.40 -0.1188 MIMAT0003484 mmu-miR-720 73666 Thoc3 acCUCCGGG--GUCGCUCUa |||| || |||||||| --GAGGGCCGACAGCGAGAg 2 17 1 18 [mm9:13:54561417-54561434:-] 0.6107 159 7 -24.47 -0.2059 MIMAT0004863 mmu-miR-220 73666 Thoc3 uucacagacuGUGACACCACc :||||||||| gagcuagcuuUACUGUGGUGa 2 12 326 346 [mm9:13:54561089-54561109:-] 0.5012 151 7 -18.68 -0.3303 MIMAT0004888 mmu-miR-493 73666 Thoc3 ggaCCGUGUGUCAUCCUGGAAGu ||| : | | ||||||| ggaGGCUGGGUGCA-GACCUUCc 2 21 130 151 [mm9:13:54561284-54561305:-] 0.5106 142 7 -17.75 -0.3479 MIMAT0004933 mmu-miR-878-3p 73666 Thoc3 agaugggucacaccACAGUAcg |||||| uaaauguuuauaaaUGUCAUaa 3 9 194 215 [mm9:13:54561220-54561241:-] 0.5276 120 0 -5.59 -0.1864 MIMAT0004935 mmu-miR-872* 73666 Thoc3 uccuccGAUGACGUUAUCAAGu || :||: ||||||| accuucCUUUUGU-AUAGUUCa 2 17 145 165 [mm9:13:54561270-54561290:-] 0.5191 150 7 -13.84 -0.9715 MIMAT0004862 mmu-miR-877* 73666 Thoc3 acccuccucccucUUCUCCUGu :||||||| ccuaaugacuccuGAGAGGACc 2 10 98 119 [mm9:13:54561316-54561337:-] 0.4993 141 7 -11.22 -0.1088 MIMAT0005851 mmu-miR-1193 73666 Thoc3 cuAUCAUUUUG-CCCAC-UGGAu |:|| |::| | ||| |||| uuUGGUCAGGCUGAGUGUACCUu 2 20 277 299 [mm9:13:54561136-54561158:-] 0.5012 122 0 -13.63 -0.4309 MIMAT0005858 mmu-miR-1197 73666 Thoc3 ucuUCA-UCUGGUACACA-GGAu :|| ||:|:: |||| ||| uuuGGUCAGGCUGAGUGUACCUu 2 19 277 299 [mm9:13:54561136-54561158:-] 0.5012 121 0 -15.95 -0.4245 MIMAT0009392 mmu-miR-1929 73666 Thoc3 gaGACGAGAUAUUUCAG-GAUCUu :||:|:|| ::: || ||||| uuUUGUUUUA-GGGUUCUCUAGAg 2 22 490 512 [mm9:13:54560923-54560945:-] 0.5011 123 0 -17.23 -0.5847 MIMAT0009407 mmu-miR-1942 73666 Thoc3 guUGGUCU-ACU-UCUG-UAGACu || | | ||: |||| ||||| gaACAAAACUGGUAGACUAUCUGc 2 20 513 536 [mm9:13:54560899-54560922:-] 0.5011 121 0 -16.24 -0.3436 MIMAT0009415 mmu-miR-1948 73666 Thoc3 gaCAUGCUCACGAGACGGAUUu ||| || | ||||||||| ugGUA-GACU-AUCUGCCUAAg 2 21 522 541 [mm9:13:54560894-54560913:-] 0.5011 156 7 -18.72 -0.2458 MIMAT0009445 mmu-miR-1274a 73666 Thoc3 accGCGGACUUGUCCCUGGACu | |||||: | ||||||| ugaCUCCUGAG-A-GGACCUGa 2 20 103 122 [mm9:13:54561313-54561332:-] 0.5106 155 7 -26.62 -0.5483 MIMAT0000128 mmu-miR-30a 73666 Thoc3 gaaggucagcuccUACAAAUGu |||||||: guaggcaccauaaAUGUUUAUa 2 10 184 205 [mm9:13:54561230-54561251:-] 0.5276 129 0 -9.74 -0.1578 MIMAT0000130 mmu-miR-30b 73666 Thoc3 ucgacucacauccUACAAAUGu |||||||: guaggcaccauaaAUGUUUAUa 2 10 184 205 [mm9:13:54561230-54561251:-] 0.5276 129 0 -12.42 -0.1563 MIMAT0000142 mmu-miR-9 73666 Thoc3 agUAUGUCG-AUCUAUUGGUUUcu | |:: | || ||:|||||| auAAAUGUCAUAAAUGACCAAAaa 3 22 203 226 [mm9:13:54561209-54561232:-] 0.5144 140 0 -10.27 -0.2340 MIMAT0000142 mmu-miR-9 73666 Thoc3 aguaugucgaUCUAUUGGUUUcu | | ||||||| aaaaaaaaaaAAAAAACCAAAcc 3 14 223 245 [mm9:13:54561190-54561212:-] 0.5144 129 0 -5.74 -0.2315 MIMAT0000145 mmu-miR-133a 73666 Thoc3 gucgaccaacuucccCUGGUUu |||||| auaaaugucauaaauGACCAAa 2 8 203 224 [mm9:13:54561211-54561232:-] 0.5276 120 6 -8.53 -0.3231 MIMAT0000209 mmu-miR-129-5p 73666 Thoc3 cguucgggucuggcGUUUUUc |||||| augucauaaaugacCAAAAAa 2 8 207 227 [mm9:13:54561208-54561228:-] 0.5144 120 6 -8.37 -0.4024 MIMAT0000209 mmu-miR-129-5p 73666 Thoc3 cguucgggucuggcGUUUUUc |||||| aaaaaaaaccaaacCAAAAAa 2 8 231 251 [mm9:13:54561184-54561204:-] 0.5012 120 6 -9.84 -0.1337 MIMAT0000248 mmu-miR-30e 73666 Thoc3 gaaggucaGUUCCUACAAAUGu || |||||||: guaggcacCAUAAAUGUUUAUa 2 15 184 205 [mm9:13:54561230-54561251:-] 0.5276 130 0 -10.41 -0.1548 MIMAT0000514 mmu-miR-30c 73666 Thoc3 cgacucucacauccUACAAAUGu |||||||: uguaggcaccauaaAUGUUUAUa 2 10 183 205 [mm9:13:54561230-54561252:-] 0.5276 129 0 -14.02 -0.1563 MIMAT0000515 mmu-miR-30d 73666 Thoc3 gaaggucagccccUACAAAUGu |||||||: guaggcaccauaaAUGUUUAUa 2 10 184 205 [mm9:13:54561230-54561251:-] 0.5276 129 0 -9.74 -0.1593 MIMAT0004651 mmu-miR-340-5p 73666 Thoc3 uuagucagaguaacgAAAUAUu |||||| uaggcaccauaaaugUUUAUAa 2 8 185 206 [mm9:13:54561229-54561250:-] 0.5276 120 6 -5.61 -0.1601 MIMAT0000590 mmu-miR-342-3p 73666 Thoc3 ugcccacgCUAAA-GACA-CACUCu | ||| |||| ||||| cugagcuaGCUUUACUGUGGUGAGc 2 16 324 348 [mm9:13:54561087-54561111:-] 0.5012 122 0 -13.70 -0.1705 MIMAT0000656 mmu-miR-139-5p 73666 Thoc3 gaCCUCUGUGCACGUG-ACAUCu | || | : || || ||||| auGUAGUCUUUUGGACUUGUAGg 2 21 166 188 [mm9:13:54561247-54561269:-] 0.5276 120 0 -12.65 -0.6837 MIMAT0000662 mmu-miR-216a 73666 Thoc3 agUGUC-AACGGUCGACU-CUAAu |||| | ||:| ||| |||| ugACAGCUAGCUA-AUGAGGAUUu 2 21 445 467 [mm9:13:54560968-54560990:-] 0.5012 121 0 -13.36 -0.2967 MIMAT0000769 mmu-miR-133b 73666 Thoc3 aucgaccaacuucccCUGGUUu |||||| auaaaugucauaaauGACCAAa 2 8 203 224 [mm9:13:54561211-54561232:-] 0.5276 120 6 -8.53 -0.3231 MIMAT0004745 mmu-miR-384-5p 73666 Thoc3 uguaacggauccUUAACAAAUGu || ||||||: uguaggcaccauAAAUGUUUAUa 2 12 183 205 [mm9:13:54561230-54561252:-] 0.5276 131 0 -8.50 -0.1548 MIMAT0004750 mmu-miR-425 73666 Thoc3 aguugcccucacuagcACAGUAa |||||| cauaaauguuuauaaaUGUCAUa 2 8 192 214 [mm9:13:54561221-54561243:-] 0.5276 120 6 -6.01 -0.2411 MIMAT0003112 mmu-miR-489 73666 Thoc3 cgacGGUAUAUACA-----CCACAGUAa ||||| |||| |||||| ggcaCCAUAAAUGUUUAUAAAUGUCAUa 2 20 187 214 [mm9:13:54561221-54561248:-] 0.5276 122 6 -14.31 -0.2347 MIMAT0003450 mmu-miR-488 73666 Thoc3 cuGGUUCUUUGU-CGGAAAGUu |:|| :| :: ||||||| acCUAAUGACUGUACCUUUCAg 2 20 57 78 [mm9:13:54561357-54561378:-] 0.4881 146 7 -14.23 -0.2590

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G055096 Thoc3 Mus musculus 73666

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Thoc3 mmu-miR-26bstar beg:532 end:547 pic:3' CTCGGTTCATTACCTCTTGTCC 5'& ||| ||||||| &5' --GCCTA-------AGAACAG- 3' Thoc3 mmu-miR-877star beg:108 end:136 pic:3' ACCCTCCT------CCCTCTTCTCCTGT 5'& | ||||| ||||||.|||| | &5' -GAGAGGACCTGATGGGAGAGGAGG-C- 3' Thoc3 mmu-miR-877star beg:74 end:91 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& |||||||.|||| | &5' -------AGGGAGAGGAGGCC- 3' Thoc3 mmu-miR-720 beg:0 end:18 pic:3' ACCTCCGGG-GTCGCTCTA 5'& | |||| |||||||| &5' -GAGGGCCGACAGCGAGA- 3' Thoc3 mmu-miR-872star beg:148 end:166 pic:3' TCCTCCGATGACGTTATCAAGT 5'& || .||. |||||||| &5' ------CTTTTGT-ATAGTTCA 3' Thoc3 mmu-miR-2141 beg:383 end:394 pic:3' TTGAAAAGACTGTGGAGGA 5'& |||||||| &5' -----------CACCTCCT 3' Thoc3 mmu-miR-762 beg:361 end:387 pic:3' CGAGA-CAGGGCCGGGGTCGGGG 5'& |||| | ||| ||||||||||| &5' GCTCCAGCCCCAGCCCCAGCCCC 3' Thoc3 mmu-miR-92astar beg:373 end:391 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& ||| |||. |||||||| &5' -----GCC-CCAG-CCCCACCT 3' Thoc3 mmu-miR-503 beg:434 end:447 pic:3' GACGTCATGACAAGGGCGACGAT 5'& |||||||||. &5' -------------CCCGCTGCTG 3' Thoc3 mmu-miR-665 beg:379 end:396 pic:3' TCCCTGGAGTCGGAGGACCA 5'& .|| || |||||||| &5' ----GCCCCA-CCTCCTGG- 3' Thoc3 mmu-miR-493 beg:132 end:151 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& |||| . || ||||||| &5' -CTGG-GTGCA----GACCTTC- 3' Thoc3 mmu-miR-24-1star beg:173 end:192 pic:3' TGACTATAGTC-GAGTCATCCGTG 5'& | | ||. |||||||| &5' -------TTGGACTT-GTAGGCAC 3' Thoc3 mmu-let-7astar beg:140 end:162 pic:3' CCTTTCTGTCATCT-AACATATC 5'& |||| |||||||| &5' ----AGACCTTCCTTTTGTATAG 3' Thoc3 mmu-let-7c-2star beg:140 end:162 pic:3' CCTTTCTGTCATCT-AACATATC 5'& |||| |||||||| &5' ----AGACCTTCCTTTTGTATAG 3' Thoc3 mmu-miR-1224 beg:425 end:449 pic:3' GAGGT--GGAGGGGTCAGGAGTG 5'& ||| |||||||. | || || &5' --CCATCCCTCCCCGCTGCTGAC 3' Thoc3 mmu-miR-125a-5p beg:70 end:82 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& |.||||||| &5' ---------------TTTCAGGGA 3' Thoc3 mmu-miR-125b-5p beg:70 end:82 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& |.||||||| &5' -------------TTTCAGGGA 3' Thoc3 mmu-miR-1274a beg:100 end:123 pic:3' ACCGCGGACTTGTCCCTGGACT 5'& || | |||||. |||||||| &5' TGACTCCTGAGA--GGACCTGA 3' Thoc3 mmu-miR-127star beg:323 end:338 pic:3' TAGTCTCGGGAGACTCGAAGTC 5'& ||||. |||||.| &5' ----GAGCT-----AGCTTTA- 3' Thoc3 mmu-miR-128 beg:323 end:343 pic:3' TTTCTCTGGCC-AAGTGACACT 5'& ||| | | ||.||||||. &5' ---GAG-CTAGCTTTACTGTGG 3' Thoc3 mmu-miR-130bstar beg:5 end:26 pic:3' TCATCAC-GTTG-TC-CCTTTCTCA 5'& | ||.| || |||.|||| &5' ------GACAGCGAGAGGAGAGAG- 3' Thoc3 mmu-miR-139-5p beg:323 end:343 pic:3' GACCTCTG-TGCACGTGACATCT 5'& ||| .| .|||||.| &5' ---GAGCTAGCTT-TACTGTGG- 3' Thoc3 mmu-miR-150 beg:110 end:130 pic:3' GTGACCATGTTCC----CAACCCTCT 5'& .||| | ||||||| &5' ---------GAGGACCTGATGGGAGA 3' Thoc3 mmu-miR-151-3p beg:159 end:180 pic:3' GGAGTTCC-TCGGAGTCAGATC 5'& .|||| | ||.|| |.|.| &5' -TTCAATGTAGTCT---TTTGG 3' Thoc3 mmu-miR-1839-5p beg:518 end:539 pic:3' GTTCTGGACAA---GATAGATGGAA 5'& ||| ||||||.||| &5' ------CTGGTAGACTATCTGCCT- 3' Thoc3 mmu-miR-18a beg:283 end:301 pic:3' GATAGACGTGATCTACGTGGAAT 5'& .||. ||.|||||| &5' --------GCTGAGTGTACCTTA 3' Thoc3 mmu-miR-1902 beg:55 end:76 pic:3' TTCAGTACGGA----TGACGTGGAGA 5'& ||| ||||.||||.| &5' --------CCTAATGACTGTACCTTT 3' Thoc3 mmu-miR-1904 beg:19 end:35 pic:3' GGAGGGAGGTCTCCT-CGTCTTG 5'& |||||| ||||.| &5' ---------AGAGGAGGCAGGA- 3' Thoc3 mmu-miR-191star beg:459 end:479 pic:3' CCCTTGCTTTAGGTTCACGTCG 5'& ||| | ||||||||| &5' -GGATTT---TGCAAGTGCAG- 3' Thoc3 mmu-miR-1934 beg:15 end:42 pic:3' TCTC-CTGCTTCGTCCCCTGGTCT 5'& .||| || ||.||||| |.||.|. &5' GGAGAGAGGAGGCAGGAGGCCGGG 3' Thoc3 mmu-miR-1948 beg:518 end:542 pic:3' GACATGCTCACGAGACGGATTT 5'& ||| || |||||||||. &5' CTGGTAGACTA-TCTGCCTAAG 3' Thoc3 mmu-miR-196b beg:41 end:62 pic:3' GGGTTGTTGT-CCTTTGATGGAT 5'& | .|| || .||||||| &5' -CGGACTATTTGG--GCTACCTA 3' Thoc3 mmu-miR-199a-5p beg:304 end:320 pic:3' CTTGTCCATCAGAC-TTGTGACCC 5'& |||| .|.||||| &5' ----------TCTGTGATACTGG- 3' Thoc3 mmu-miR-199bstar beg:304 end:320 pic:3' CTTGTCCATCAGAT-TTGTGACCC 5'& |||. .|.||||| &5' ----------TCTGTGATACTGG- 3' Thoc3 mmu-miR-2132 beg:356 end:379 pic:3' GTAG-CGCAGTTGTGGG-CGG 5'& |||. || ||.| ||| ||| &5' CATTAGCTCCAGC-CCCAGCC 3' Thoc3 mmu-miR-220 beg:329 end:346 pic:3' TTCACAGACTGTGACACCACC 5'& | || .||||||||| &5' ----G-CTT-TACTGTGGTG- 3' Thoc3 mmu-miR-223 beg:437 end:450 pic:3' ACCCCATAAACTGTTTGACTGT 5'& .| .|||||| &5' -----------GCT-GCTGACA 3' Thoc3 mmu-miR-22star beg:308 end:326 pic:3' ATTTCGAACGGTGACTTCTTGA 5'& || .||||.|||||| &5' -------TGATACTGGAGAACT 3' Thoc3 mmu-miR-24-2star beg:171 end:192 pic:3' TGACAAAGTC-GAGTCATCCGTG 5'& ||| | ||. |||||||| &5' ----TTTTGGACTT-GTAGGCAC 3' Thoc3 mmu-miR-24 beg:307 end:332 pic:3' GACAAG--GACGACTTGACTCGGT 5'& |||| ||| |||||||||.| &5' CTGTGATACTGGAGAACTGAGCTA 3' Thoc3 mmu-miR-27a beg:323 end:343 pic:3' CGCCTTGAATCGG--TGACACTT 5'& ||.| ||||. ||||||. &5' ---GAGC-TAGCTTTACTGTGG- 3' Thoc3 mmu-miR-27b beg:323 end:343 pic:3' CGTCTTGAATCGG--TGACACTT 5'& ||.| ||||. ||||||. &5' ---GAGC-TAGCTTTACTGTGG- 3' Thoc3 mmu-miR-296-3p beg:286 end:307 pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& |||. | | |..||||||| &5' ---GAGTGTAC-CTTAACCCTC 3' Thoc3 mmu-miR-299star beg:509 end:532 pic:3' TACATACAC-CCT-------GCCATTTGGT 5'& | ||| .||||.||.| &5' --------GAGGAACAAAACTGGTAGACTA 3' Thoc3 mmu-miR-300 beg:140 end:161 pic:3' CTTCTCTCGAACGGGAACGTAT 5'& ||| ||| |..|||.||| &5' ----AGACCTTCCTTTTGTATA 3' Thoc3 mmu-miR-3099star beg:121 end:139 pic:3' GTTCCCGACCTTCCTTCGACC 5'& ||| .||||.||||| &5' ---GGGA---GAGGAGGCTGG 3' Thoc3 mmu-miR-320 beg:318 end:337 pic:3' AGCGGGAGAGTTGGGTCGAAAA 5'& | || .| |.|||||| &5' --GAACT---GAGCTAGCTTT- 3' Thoc3 mmu-miR-322star beg:398 end:420 pic:3' CACAACGTCGCG-AAGTACAAA 5'& |||||| |.|. || |||| &5' GTGTTG--GTGTATTTGTGTT- 3' Thoc3 mmu-miR-338-3p beg:387 end:408 pic:3' GTTGTTTTAGTGAC------TACGACCT 5'& || ||| .||.||| &5' --------TC-CTGGGTTTTGTGTTGG- 3' Thoc3 mmu-miR-343 beg:65 end:84 pic:3' AGACCCGTGTACT-TCCCTCT 5'& |.|| ||||||| &5' -----GTACCTTTCAGGGAGA 3' Thoc3 mmu-miR-346 beg:22 end:47 pic:3' TCTCCGTCCG-TGAGCCCGTCTGT 5'& .|||||||| .| |||||.||| &5' GGAGGCAGGAGGC-CGGGCGGAC- 3' Thoc3 mmu-miR-3470a beg:43 end:66 pic:3' GGTCGGACCAGATGTTTCACT 5'& |.| ..||| |||| | ||| &5' CTA-TTTGGGCTACCTAATGA 3' Thoc3 mmu-miR-3470b beg:43 end:66 pic:3' GGTCGGACCAGATGTCTCACT 5'& |.| ..||| |||| ||| &5' CTA-TTTGGGCTACCTAATGA 3' Thoc3 mmu-miR-351 beg:65 end:82 pic:3' GTCCGAGTTTCCCGAGG--AGTCCCT 5'& |. || ||||||| &5' ------------GTACCTTTCAGGGA 3' Thoc3 mmu-miR-375 beg:532 end:548 pic:3' AGTGCGCTCGGCTTGCTTGTTT 5'& ||| |||||.| &5' --------GCCTAA-GAACAGA 3' Thoc3 mmu-miR-381 beg:138 end:161 pic:3' TGTCTCTCGAACGGGAACATAT 5'& .|||| ||| |..||||||| &5' GCAGAC--CTTCCTTTTGTATA 3' Thoc3 mmu-miR-466l beg:397 end:418 pic:3' TTATACACACGTACATAAATAT 5'& ||||| .|||||||.|. &5' ----TGTGTTGGTGTATTTGTG 3' Thoc3 mmu-miR-469 beg:10 end:32 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& |.||| .| .|.|||||| &5' ------CGAGAG-GAGAGAGGAGGCA 3' Thoc3 mmu-miR-470star beg:386 end:409 pic:3' AGAAGAGTCTTTCCATGACCAA 5'& || || .| ||..|||| &5' -CTCCTGGGTTTTGTGTTGGT- 3' Thoc3 mmu-miR-484 beg:120 end:141 pic:3' TAGCCCTC-CC-CTGACTCGGACT 5'& .||||| || |.|||.|. &5' --TGGGAGAGGAGGCTGGGT---- 3' Thoc3 mmu-miR-615-3p beg:75 end:98 pic:3' TTCTC-CCTCTGGGTCCGAGCCT 5'& ..||| ||||.|| ||||. &5' GGGAGAGGAGGCCTGGGCTT--- 3' Thoc3 mmu-miR-669k beg:397 end:419 pic:3' AACGT-ACGCACATATACGTAT 5'& |||.. || |||||| ||..| &5' TTGTGTTG-GTGTATTTGTGT- 3' Thoc3 mmu-miR-670 beg:60 end:82 pic:3' AAGTGGTG-TATGT-GAGTCCCTA 5'& |. || .||| .||||||| &5' ---ATGACTGTACCTTTCAGGGA- 3' Thoc3 mmu-miR-682 beg:49 end:71 pic:3' GTCTGAAGTGAC-ACTGACGTC 5'& .|.|| | || ||||||.| &5' -GGGCTAC-CTAATGACTGTA- 3' Thoc3 mmu-miR-686 beg:20 end:33 pic:3' AGAAGTGGCAGAC-CCTTCGTTA 5'& | |||.|||. &5' ------------GAGGAGGCAG- 3' Thoc3 mmu-miR-692 beg:5 end:25 pic:3' CTCACTC-CGCGAGTTTCTCTA 5'& || ||| ..||||| &5' ----GACAGCGAGAGGAGAGA- 3' Thoc3 mmu-miR-692 beg:61 end:84 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& || || | .|||..|||| &5' GACTGTACCTTTCAGGGAGA- 3' Thoc3 mmu-miR-705 beg:367 end:390 pic:3' ACGGG--TGGGGTGGAGGGTGG 5'& |||| .||||| | |||||| &5' -GCCCCAGCCCCAGC-CCCACC 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Thoc3 mmu-let-7b 34 62 -UUGGUGUGU-UGGA-----UGAUGGAGU ::||: :|: ||: :|||||| AGGCCGGGCGGACUAUUUGGGCUACCUA- Thoc3 mmu-let-7g 519 540 -UGACAUGUUUGAU-GAUGGAGU |||| |:|||| ||:||| AACUGGU-AGACUAUCUGCCUA- Thoc3 mmu-let-7i 35 62 -UGUCGUGUUUGA------UGAUGGAGU :| | :|::||| :|||||| GGCCGGGCGGACUAUUUGGGCUACCUA- Thoc3 mmu-miR-101b 324 344 GAAGUCGAUAGUGUCAUGACAU- | ||||| :| ||||||: -CUGAGCUA--GCUUUACUGUGG Thoc3 mmu-miR-125a 474 516 GUGUCCA---------------AUUUCCC-AGAG-UC-CCU :||||| | |||| |||| || ||| UGCAGGUCAUGGUCUGUUUUGUUUUAGGGUUCUCUAGAGGAA Thoc3 mmu-miR-140* 306 347 -AGGCACCAAGA--------------UGG---GACACCAU ||:||| || :|: |||||||: CUCUGUGAUACUGGAGAACUGAGCUAGCUUUACUGUGGUGA Thoc3 mmu-miR-149 17 43 -CCUCACUUCUGUG-CCUC-GGUCU- |||| ||:|| :| |||| ||:|: AGGAGAGAGGAGGCAGGAGGCCGGGC Thoc3 mmu-miR-18 273 302 AUAGA---CG---UGAUCUACGUGGAAU- |||| |: :||: :||:|||||| AAUCUUUGGUCAGGCUGAGUGUACCUUAA Thoc3 mmu-miR-181c 274 296 UGAGUGGCU-GUCCAACUUACAA || :|: |||| |||:||| -AUCUUUGGUCAGGCUGAGUGUA Thoc3 mmu-miR-202 54 77 AGAAGGG-UACGCGAUAUGGAGA- || ||: ||| ||:|||||:| GCUACCUAAUGA-CUGUACCUUUC Thoc3 mmu-miR-207 15 44 -CUCC-CUCCUCUCGGUCCUCU---UCG- |||| ||| :||| ||||||: :|| AGAGGAGAGAGGAGGCAGGAGGCCGGGCG Thoc3 mmu-miR-212 34 71 -CCGGCA---CUG----ACCU---------CUGACAAU ||||| ||| |||: |||||| AGGCCGGGCGGACUAUUUGGGCUACCUAAUGACUGUA- Thoc3 mmu-miR-24 307 333 -GACAAG--GACGACUUGACUCGGU- |||| ||| |||||||||:| UCUGUGAUACUGGAGAACUGAGCUAG Thoc3 mmu-miR-25 114 146 AGUCUGG-----------CUCUG-UUCACGUUAC :|||| |||:| ::|||||: -AGGACCUGAUGGGAGAGGAGGCUGGGUGCAGA- Thoc3 mmu-miR-27a 316 345 CGCCU--UGA----AUCGG--UGACACUU :||| ||| ||||: ||||||: CUGGAGAACUGAGCUAGCUUUACUGUGGU Thoc3 mmu-miR-27b 319 345 CGUCUUGA----AUCGG--UGACACUU |||||| ||||: ||||||: -GAGAACUGAGCUAGCUUUACUGUGGU Thoc3 mmu-miR-292-3p 28 49 UGUGAGUUUUGGACCGCCGUGAA :| :|::|| ||||| ||| -GGCAGGAGGCCGGGCGG-ACUA Thoc3 mmu-miR-31 447 472 -GUCGAUACGG----UCGUAGAACGGA |||||| ||: || ||:|||| ACAGCUA-GCUAAUGAGGAUUUUGCA- Thoc3 mmu-miR-322 466 486 ACAACG-UCGCGA--AGUACAAA |||| ||:|| ||||| -UUUGCAAGUGCAGGUCAUGG-- Thoc3 mmu-miR-328 20 42 UGC-CUUC-CCGUCUCUCCCGGUC- | ||:| ||||| || ||||:| -AGAGAGGAGGCAG-GA-GGCCGGG Thoc3 mmu-miR-331 73 97 -AAGAUCCUA---UCCGGGUCCCCG- ||| :||| |||||: |||| UUUCAGGGAGAGGAGGCCU--GGGCU Thoc3 mmu-miR-339 102 129 -ACUCGAGGAC-CUCCUGU----CCCU- ||| |||||| |||||| |||| AUGA-CUCCUGAGAGGACCUGAUGGGAG Thoc3 mmu-miR-342 120 147 -CUGCCCACG-CUAAAGACACAC-UCU- ||:||| | || ||| ||| ||| UGAUGGGAGAGGAGG-CUGGGUGCAGAC Thoc3 mmu-miR-345 313 351 CGUGACC--------UGAUCC--------CCAGUCGU- :||||| :|||| ||| |||| AUACUGGAGAACUGAGCUAGCUUUACUGUGGUGAGCAA Thoc3 mmu-miR-346 24 48 -UCUCCGUCCG-UGAGCCCGUCUGU :|||||||| :| |||||:||| AGGAGGCAGGAGGC-CGGGCGGACU Thoc3 mmu-miR-351 37 83 -GUCCGAGUUU----CCCGA-GG---------------AGUCCCU |:||| ||||| || ||||||| CCGGGCGGACUAUUUGGGCUACCUAAUGACUGUACCUUUCAGGGAG Thoc3 mmu-miR-361 104 127 CAUGGGGAC-CUCUAAGACUAUU- ||:|||| |||: |||||:: -GACUCCUGAGAGGACCUGAUGGG Thoc3 mmu-miR-370 366 399 UUGGUCCAAGGU-GGGGUCG----------UCCG- |||| ||| ||||||| :||: -UCCAGCC-CCAGCCCCAGCCCCACCUCCUGGGUU Thoc3 mmu-miR-378 111 135 UGUGUCCUGGAC--CUCAGUCCUC- | |||||||| |:| ||||| -GAGAGGACCUGAUGGGAGAGGAGG Thoc3 mmu-miR-379 36 61 -GGA-UGCAAGGUA--UCAGAUGGU || :|| |:|| :| ||||| GCCGGGCGGACUAUUUGGGCUACCU Thoc3 mmu-miR-412 92 133 UGCCGA---------------UCACCUGG----UCCACUUCA |||| || ||||| :|| ||:| -GGGCUUCCUAAUGACUCCUGAGAGGACCUGAUGGGAGAGGA Thoc3 mmu-miR-423 22 44 GACUCC-CCGGAGUCUGGCUCGA |||| ||| ||:|||:|| -AGAGGAGGCAGGAGGCCGGGCG Thoc3 mmu-miR-431 440 479 GGACGUACUGCCGG---------------ACGUUC-UGU- |||| |||| ||: |||||| :|| GCUGC-UGACAGCUAGCUAAUGAGGAUUUUGCAAGUGCAG Thoc3 mmu-miR-455-5p 165 197 GCUACAUCAGGUU---------UCCGU-GUAU- ||||||||: ||||| |||| -AAUGUAGUCUUUUGGACUUGUAGGCACCAUAA Thoc3 mmu-miR-465-3p 104 125 AGAUGAAU-CUUUCCGGGACUAG ||| ||:||| |||||| --GACUCCUGAGAGGACCUGAUG Thoc3 mmu-miR-469 7 33 CCUGUGGUUCUAG-UUACUUUCUCCGU- |||| |:||| :| :|:|||||| CGACAGCGAGAGGAGA--GAGGAGGCAG Thoc3 mmu-miR-483 116 143 -UGUUCUGCCCUCCCCUCC---UCACU || ||:||||| ||||| :||| GACCUGAUGGGAGAGGAGGCUGGGUGC Thoc3 mmu-miR-484 122 142 UAGCCCUC-CC-CUGACUCGGACU :||||| || |:|||:|: -AUGGGAGAGGAGGCUGGGUG--- Thoc3 mmu-miR-486 122 146 GAGCCC-CG---UCGAGUCAUGUCCU :||| | :||| :||:||| -AUGGGAGAGGAGGCUGGGUGCAGA- Thoc3 mmu-miR-488* 74 93 CUGGUUCUUUG---UCGGAAAGUU :||:|:|: :|||| -UUCAGGGAGAGGAGGCCUG---- Thoc3 mmu-miR-495 470 494 UUCUUCACGU--GGUACAA-ACAAA- ||||||| :|||| ||||| --CAAGUGCAGGUCAUGGUCUGUUUU Thoc3 mmu-miR-497 420 448 AUGUUU--GGUGUCACA---CGACGAC- :||: |||: ||||||| AGCAGUUCCCAUCCCUCCCCGCUGCUGA Thoc3 mmu-miR-500 114 145 GACUUGGGAA----------CGGGUCCACGUA |:|||: | |::|||||| -AGGACCUGAUGGGAGAGGAGGCUGGGUGCAG Thoc3 mmu-miR-501* 132 145 GUUUAGGAACGGGCCCACGUAA | |:||||||| --------AGGCUGGGUGCAG- Thoc3 mmu-miR-503 420 448 -CGUCAUGACAA-----GGGCGACGAU- ||||| |||||||||: AGCAGUUCCCAUCCCUCCCCGCUGCUGA Thoc3 mmu-miR-543 177 204 -UCU-----UCACGUGGCGCUUACAAA- :|| || ||||| ||||||| UGGACUUGUAG-GCACCAUAAAUGUUUA Thoc3 mmu-miR-615 77 99 -UUCUC-CCUCUGGGUCCGAGCCU ::||| ||||:||::||||: AGGGAGAGGAGGCCUGGGCUUC-- Thoc3 mmu-miR-665 81 102 AUUCC-CUGGAGUCGGAGGACCA :||| |:||| :||:|||| AGAGGAGGCCUGGGCUUCCUA-- Thoc3 mmu-miR-666 433 458 CCGAGA-GUGUCGACA--CGGGCGA- ||| |:| |||| || ||| -CCUCCCCGCUGCUGACAGCUAGCUA Thoc3 mmu-miR-670 53 83 AAGUGGUG---------UAUGU-GAGUCCCUA :|:|| :||| :||||||| --GGCUACCUAAUGACUGUACCUUUCAGGGAG Thoc3 mmu-miR-671 364 402 GGAGGUCGGGG---------------AGGUCCCGAAGGA |||||||||| ||| |||:||: GCUCCAGCCCCAGCCCCAGCCCCACCUCCUGGGUUUUG- Thoc3 mmu-miR-673 105 141 -GAGG---UUCCUGG-------UCUCGAC--ACUC- |||| :|||||| |||| | ||:| ACUCCUGAGAGGACCUGAUGGGAGAGGAGGCUGGGU Thoc3 mmu-miR-675-5p 336 377 -UGACACC---------CGGGAA-------AGG-CGUGGU ||||||| |||| ||| || ||| UACUGUGGUGAGCAAGUGCCCCACAUUAGCUCCAGCCCCAG Thoc3 mmu-miR-676* 474 514 -CGUUCAG---------------GAUUCCAAC--AUCUCA |||:||| :||:|||| ||||| UGCAGGUCAUGGUCUGUUUUGUUUUAGGGUUCUCUAGAGG Thoc3 mmu-miR-679 469 490 UGGUUCUCAGUGGAGUGUCAGG- |||| | || |||::|||: -GCAAGUG-CAGGUCAUGGUCUG Thoc3 mmu-miR-680 353 375 GGGGGUACAGUCGUCUACGGG- ||||| |:||| |||| GCCCCACAUUAGCUCCAGCCCC Thoc3 mmu-miR-681 439 465 UCGACGGA---CGGUCG----CUCCGAC |||||: ||:||| |||| CGCUGCUGACAGCUAGCUAAUGAGGA-- Thoc3 mmu-miR-683 1 35 CUCCUG--UGUCGAAUG----------UCGUCC- ||||:| ||||| :||||| GAGGGCCGACAGCGAGAGGAGAGAGGAGGCAGGA Thoc3 mmu-miR-689 27 57 CCUGGGG--CGGCUCGCC-------CCUGC |:| ||||:|||| ||:| AGGCAGGAGGCCGGGCGGACUAUUUGGGCU Thoc3 mmu-miR-693-5p 172 191 CUUUUGAAAGCCU--ACA-CCGAC ||||:||| ||| ||| ----UCUUUUGGACUUGUAGGCA- Thoc3 mmu-miR-7 75 101 -GUUGUUUUA----GUGAUCAGAAGGU ||: :|:| | ||:| ||||| UCAGGGAGAGGAGGC-CUGGGCUUCCU Thoc3 mmu-miR-702 18 45 -CUCG--CC-CCA-UUUCCCACCCGU- ||| || || ::||| ||||: GGAGAGAGGAGGCAGGAGGCCGGGCGG Thoc3 mmu-miR-705 375 395 ACGGG--UGGGGUGGAGGGUGG |||| :||||||||||: AGCCCCAGCCCCACCUCCUG-- Thoc3 mmu-miR-706 489 510 AAAAAACUCUGUCCCAAAGAGA- ||||| :|||| |||||| -GUUUUGUUUUAGGG-UUCUCUA Thoc3 mmu-miR-709 364 382 AGGAGGACGGAGACGGAGG- |||| ||| | ||| || -GCUCCAGCCCCAGCC-CCA Thoc3 mmu-miR-718 25 47 GCUGUGGG--CCGGCCCGCCUUC || :| ||||||||||| GGAGGCAGGAGGCCGGGCGGAC- Thoc3 mmu-miR-744 363 385 -CGACAAUCGGGAUCGGGG-CGU ||| ||||| |||||| || AGCUCC-AGCCCCAGCCCCAGCC Thoc3 mmu-miR-761 413 446 -ACACAGUCA--AAGU---GGGA----CGACG- |||||:|| ||| |||| ||||| UUGUGUUAGCAGUUCCCAUCCCUCCCCGCUGCU Thoc3 mmu-miR-762 363 388 -CGAGA-CAGGGCCGGGGUCGGGG- |||| | ||| ||||||||||| AGCUCCAGCCCCAGCCCCAGCCCCA Thoc3 mmu-miR-764-3p 28 62 -UGUCAA-CGG------UGAUA---CCGGAGGA- :||| ||| ||||| |||: ||| GGCAGGAGGCCGGGCGGACUAUUUGGGCUACCUA Thoc3 mmu-miR-764-5p 177 194 UCCUCCUGUACACUCGUGG- |||| ||| :||||| ---UGGACUUGUAGGCACCA Thoc3 mmu-miR-770-3p 366 390 -GGUCGAGGU-GCAGUCCGGGUGC ||||| ||| | ||| ||||| UCCAGCCCCAGCCCCAGCCCCACC Thoc3 mmu-miR-9* 316 339 UGAAAGCCAAUA-----GAUCGAAAU- :|| ||||||||| ----CUGGAGAACUGAGCUAGCUUUAC Thoc3 mmu-miR-92 131 146 GUCCGGCCCUGUUCACGUUAU ||||:||| ||||: GAGGCUGGG-----UGCAGA- Thoc3 mmu-miR-140* 338 345 ----AGGCACCAAGAUGG--------------------GACACCAU ||:||| |||: |||||||: CCUCUCUGUGA---UACUGGAGAACUGAGCUAGCUUUACUGUGGUGA Thoc3 mmu-miR-24* 184 191 U-GACUAUA-GUCGAGU------------------CAUCCGUG || |:| :||:||| |||||||| UCCUUUUGUAUAGUUCAAUGUAGUCUUUUGGACUUGUAGGCACC Thoc3 mmu-miR-488* 71 78 CUGGUUC-UUUGUC----------------------GGAAAGUU :||::| ::|| |||||||: -GCCGGGCGGACUAUUUGGGCUACCUAAUGACUGUACCUUUCAGG Thoc3 mmu-miR-503 439 446 -----------------CGUCAUGACAA-----GGGCGACGAU ||||| |||||||||: UUGGUGUAUUUGUGUUAGCAGUUCCCAUCCCUCCCCGCUGCUGA Thoc3 mmu-miR-665 389 396 AUUCCC----------------------UGGAGUCGGAGGACCA :|| || |||||||| CCCCACAUUAGCUCCAGCCCCAGCCCCAGCCCCA-CCUCCUGGG Thoc3 mmu-miR-670 75 82 AAG-----------UGGUG---------UAUGU-GAGUCCCUA :|:|| :||| :||||||| GGCGGACUAUUUGGGCUACCUAAUGACUGUACCUUUCAGGGAG Thoc3 mmu-miR-671 93 100 --------------GGAGGUCGGGGA-----GGUCCCGAAGGA |:|:||| || ||||||||| CCUAAUGACUGUACCUUUCAGGGAGAGGAGGCCUGGGCUUCCUA Thoc3 mmu-miR-762 367 374 CGA---GACA-------------GGGC-----CGGGGUCGGGG ||| |||| ||| ||:|||||||| GCUUUACUGUGGUGAGCAAGUGCCCCACAUUAGCUCCAGCCCCA Thoc3 mmu-miR-762 373 380 CGAGA---------------------CAGGGCCGGGGUCGGGG | || ||||||||||| CUGUGGUGAGCAAGUGCCCCACAUUAGCUCCAGCCCCAGCCCCA Thoc3 mmu-miR-762 379 386 --------------------CGAGA-CAGGGCCGGGGUCGGGG |||| | ||| ||||||||||| UGAGCAAGUGCCCCACAUUAGCUCCAGCCCCAGCCCCAGCCCCA Thoc3 mmu-miR-9* 330 337 --------------------UGAAAGCCAAUA--GAUCGAAAU ||| ||||||||| ACCUUAACCCUCUCUGUGAUACUGGAGAACUGAGCUAGCUUUAC Thoc3 mmu-let-7b 39 62 uugGUGUGUUGGA--UGAUGGAgu |: || |::| :|||||| gggCGGACTATTTGGGCTACCTaa Thoc3 mmu-let-7g 520 540 UGACAUGUUUGAU-GAUGGAgu |||| ::|:|||| ||:||| ACTG-GTAGACTATCTGCCTaa Thoc3 mmu-let-7i 36 62 uGUCGUGUUUGAU------GAUGGAgu | | :|::|||| |||||| gCCGGGCGGACTATTTGGGCTACCTaa Thoc3 mmu-miR-101b 323 342 gaAGUCGAUAGUGUCAUGACAu | ||||| | : |||||| acTGAGCTAGCTT--TACTGTg Thoc3 mmu-miR-140* 323 345 aGGCACCA-AGAUGGGACACCAu |:| | | || : ||||||| aCTGAGCTAGCTTTACTGTGGTg Thoc3 mmu-miR-149 13 33 cCUCACUUCUGUGCCUCGGUCu ||| |:||| | |||| ||| cGAGAGGAGAGA-GGAGGCAGg Thoc3 mmu-miR-17-3p 346 371 auGUUCACGGG-----AGUGACGUCa ||||||||| | :|| ||| agCAAGTGCCCCACATTAGCTCCAGc Thoc3 mmu-miR-18 280 300 auAGACGUGAUCUACGUGGAAU || | :||: :||:|||||| ggTCAG-GCTGAGTGTACCTTA Thoc3 mmu-miR-181c 273 295 UGAGUGGCU-GUCCAACUUACAa | || ::|: |||| |||:||| AATCTTTGGTCAGGCTGAGTGTa Thoc3 mmu-miR-207 1 26 CUCCCUCCUCUCG--GUCCUCU-UCg ||||| || ||| |||||| || GAGGGCCGACAGCGAGAGGAGAGAGg Thoc3 mmu-miR-212 35 71 CCGGC---ACUG----ACCU---------CUGACAau ||||| ||| |||: |||||| GGCCGGGCGGACTATTTGGGCTACCTAATGACTGTac Thoc3 mmu-miR-24 308 331 GACA--AGGACGACUUGACUCGGU |||| | ||| |||||||||:| CTGTGATACTGGAGAACTGAGCTA Thoc3 mmu-miR-24* 169 191 ugacuAUAGUC-GAGUCAUCCGUG | |::| ||: |||||||| tagtcTTTTGGACTT-GTAGGCAC Thoc3 mmu-miR-25 125 146 agUCUGGCUCUG-UUCACGUuac ||| |||:| ::||||| ggAGA-GGAGGCTGGGTGCAgac Thoc3 mmu-miR-27a 323 344 cGCCUUGAAUCG--GUGACACuu | ||:| |||| :|||||| aCTGAGC-TAGCTTTACTGTGgt Thoc3 mmu-miR-27b 318 344 CGUCUUGA----AUCG--GUGACACuu | |||||| |||| :|||||| GGAGAACTGAGCTAGCTTTACTGTGgt Thoc3 mmu-miR-292-3p 27 48 UGUGAGUUUUGGACCGCCGUGAa | :| :|::|| ||||| ||| AGGCAGGAGGCCGGGCGG-ACTa Thoc3 mmu-miR-31 448 472 GUCGAUACGG----UCGUAGAACGga |||||| ||: || ||:|||| CAGCTA-GCTAATGAGGATTTTGCaa Thoc3 mmu-miR-322 465 487 ACAACG-UCGCG--AAGUACAAa | |||| ||:|| ||||| | TTTTGCAAGTGCAGGTCATGGTc Thoc3 mmu-miR-328 16 40 ugCCU-UCCCGUCUCUC--CCGGUC ||| || | ||: || ||||:| gaGGAGAGAGGAGGCAGGAGGCCGG Thoc3 mmu-miR-331 74 96 AAGAUCCUAUC--CGGGUCCCcg ||| :||| || | || ||| TTCAGGGAGAGGAGGCCTGGGct Thoc3 mmu-miR-339 112 140 aCUCGAGGAC------CUC--CUGUCCCu ||| |||| ||| |:| ||| aGAGGACCTGATGGGAGAGGAGGCTGGGt Thoc3 mmu-miR-342 121 145 CUGCCCACGCUAAAGACACAC-UCU ||:||| | |: ||| ||| ||| GATGGGAGAGGAGGCTGGGTGCAGA Thoc3 mmu-miR-345 321 349 CGUGACCUGAUC-------C-CCAGUCGU | |||| :|||| | ||| |||| GAACTGAGCTAGCTTTACTGTGGTGAGCA Thoc3 mmu-miR-346 25 47 uCUCCGUCCGUGAGCCCGUCUGu |||||||| : |||||:||| gGAGGCAGGAGGCCGGGCGGACt Thoc3 mmu-miR-351 51 81 guCCGA--GUUUCCCGA-----GGAGUCCCU |||| | || | || ::||||||| tgGGCTACCTAATGACTGTACCTTTCAGGGA Thoc3 mmu-miR-361 103 125 caUGGGGAC-CUCUAAGACUAuu ||:|||| |||: ||||| tgACTCCTGAGAGGACCTGATgg Thoc3 mmu-miR-370 365 387 uuGGUCCAAGGUGGGGUCGuccg |||| | :||||||| ctCCAGCCCCAGCCCCAGCccca Thoc3 mmu-miR-375 29 49 aGUGCGCUCGGCUUGCUUGUUu || | | ||||::||:|| | gCAGGAG-GCCGGGCGGACTAt Thoc3 mmu-miR-378 110 133 ugUGUCCUGGAC--CUCAGUCCUC | |||||||| |:| ||||| tgAGAGGACCTGATGGGAGAGGAG Thoc3 mmu-miR-379 37 60 GG-AUGCAAGGU--AUCAGAUGGu || :|| |:| |:| ||||| CCGGGCGGACTATTTGGGCTACCt Thoc3 mmu-miR-412 122 145 UGCCGAUCACCU--GGUCCACUUCa |:|| || ||| |::|||| || ATGG-GAGAGGAGGCTGGGTGCAGa Thoc3 mmu-miR-423 21 43 gaCUCC-CCGGAGUCUGGCUCGa |||| ||| ||:|||:|| gaGAGGAGGCAGGAGGCCGGGCg Thoc3 mmu-miR-431 451 476 GGACG--UACUGCC--GGACGUUCugu |: || |||| || ::|||||| CTAGCTAATGA-GGATTTTGCAAGtgc Thoc3 mmu-miR-455-5p 164 195 GCUACAUCAGG----UU-----UCCGU-GUAU | ||||||||: :| ||||| |||| CAATGTAGTCTTTTGGACTTGTAGGCACCATA Thoc3 mmu-miR-465-3p 105 124 aGAUGAAUCUUUCCGGGACUAg || || ||:||| |||||| aCTCCT--GAGAGGACCTGATg Thoc3 mmu-miR-483 112 136 UGUUCUGCCCU-CCC-CUCCUCacu | |:||| || ||| |||||| AGAGGACCTGATGGGAGAGGAGgct Thoc3 mmu-miR-484 121 138 uagCCCUCCCCUGACUCGGACu ||||| | ||| ||| gatGGGAGAG----GAGGCTGg Thoc3 mmu-miR-486 125 146 gagCCCCGUCGAGUCAUGUCcu | || :||| :||:||| ggaGAGGAGGCTGGGTGCAGac Thoc3 mmu-miR-488* 56 78 cUGGUUCUUUGUC--GGAAAGUu ||| | :|| | ||||||| tACCTAATGACTGTACCTTTCAg Thoc3 mmu-miR-495 468 492 uucUUCACGU--GGUA-CAAACAAA ||||||| :||| || ||||| tgcAAGTGCAGGTCATGGTCTGTTT Thoc3 mmu-miR-497 425 446 auguuuggugucacaCGACGAC ||||||| ttcccatccctccccGCTGCTG Thoc3 mmu-miR-500 123 144 gacuugggaaCGGGUCCACGUa | |::|||||| tgggagaggaGGCTGGGTGCAg Thoc3 mmu-miR-501* 124 145 guuuaggaaCGGGCCCACGUaa | |:||||||| gggagaggaGGCTGGGTGCAga Thoc3 mmu-miR-503 421 446 CGUCA----U-GACAAGGGCGACGAu ||||| | | | ||||||||| GCAGTTCCCATCCCTCCCCGCTGCTg Thoc3 mmu-miR-543 183 202 uCUUCACGUGGCGCUUACAAA | || ||||| : ||||||| tGTAG-GCACCATAAATGTTT Thoc3 mmu-miR-615 74 94 uucUCCCUCUGGGUCCGAGCCu ||||||| |||| :|| ttcAGGGAGA-GGAGGCCTGGg Thoc3 mmu-miR-665 376 396 auucccuGGAGUCGGAGGACCa || || |||||||| gccccagCCCCA-CCTCCTGGg Thoc3 mmu-miR-665 89 113 auuCCC--UGGAGU-CGGAGGACca ||| ||| | | |||||| cctGGGCTTCCTAATGACTCCTGag Thoc3 mmu-miR-666 420 442 cCG-AGAGUGUCGACACGGGCGA || :|| || | | |||||| aGCAGTTCCCATCCCTCCCCGCT Thoc3 mmu-miR-670 62 82 aAGUGGUGUAUGUGAGUCCCUa | ||:::| | :||||||| aTGACTGTA-CCTTTCAGGGAg Thoc3 mmu-miR-671 77 100 ggaggucggggaGGUCCCGAAGGA || ||||||||| agggagaggaggCCTGGGCTTCCT Thoc3 mmu-miR-671 377 402 GGAGGUCGG---GGAGGUCCCGAAgga || |||||| ||||| |||:|| CC-CCAGCCCCACCTCCTGGGTTTtgt Thoc3 mmu-miR-673 106 141 GAGG---UUCCUGG-------UCU----CGACACuc |||| :|||||| ||| |||| | CTCCTGAGAGGACCTGATGGGAGAGGAGGCTGGGtg Thoc3 mmu-miR-675-5p 369 390 ugacaccCGGGAAAGGCGUGGu |||| || |||| agccccaGCCCCAGCCCCACCt Thoc3 mmu-miR-675-5p 337 361 UGACACC---CGGGAAAGGCGUGgu ||||||| || | || ||| ACTGTGGTGAGCAAGTGCCCCACat Thoc3 mmu-miR-676* 490 513 cguuCAGGAUUCCA--ACAUCUCa ||::||:||| | ||||| ttttGTTTTAGGGTTCTCTAGAGg Thoc3 mmu-miR-679 468 488 ugGUUCUCAGUGGAGUGUCAGg |||| | || |||::||| tgCAAGTG-CAGGTCATGGTCt Thoc3 mmu-miR-680 335 356 gggGGUA-CAGUCGUCUACGGG |::| || |||| :||||| ttaCTGTGGTGAGCAAGTGCCC Thoc3 mmu-miR-681 442 466 uCGACGGACGGUC----GCUCCGAc |||| | ||:|| :|||| | tGCTGACAGCTAGCTAATGAGGATt Thoc3 mmu-miR-689 25 47 CCUGGGGCGGCUCGCC--CCUGc ||| | | |: ||| |||| GGAGGCAGGAGGCCGGGCGGACt Thoc3 mmu-miR-693-5p 168 191 CUUUUGAAAGCCU--ACA-CCGac | |: ||||:||| ||| ||| GTAGTCTTTTGGACTTGTAGGCac Thoc3 mmu-miR-7 76 100 GUUGUUUUAGU---GAUCAGAAGGu ||: :|:| | ||:| ||||| CAGGGAGAGGAGGCCTGGGCTTCCt Thoc3 mmu-miR-702 21 43 CUCGCC-CCAU-UUCCCACCCGu ||| || || | :||| |||| GAGAGGAGGCAGGAGGCCGGGCg Thoc3 mmu-miR-705 369 389 aCGGG--UGGGGUGGAGGGUGG |||| :||||| | |||||| aGCCCCAGCCCCAGC-CCCACC Thoc3 mmu-miR-706 488 508 AAAAAACUCUGUCCCAAAGAGA | ||||| :| || |||||| TGTTTTGTTTTA-GGGTTCTCT Thoc3 mmu-miR-709 363 381 agGAGGACGGAGACGGAGg |||| ||| | ||| | agCTCCAGCCCCAGCCCCa Thoc3 mmu-miR-718 27 47 gCUGUGGGCCGGCCCGCCUuc |:|| ||||||||||| aGGCAGGAGGCCGGGCGGAct Thoc3 mmu-miR-744 357 378 cgacAAUCGGGAUCGGGG-CGu |||||:| |||||| || cacaTTAGCTCCAGCCCCAGCc Thoc3 mmu-miR-744 369 399 cgacaaUCGGGAUCGGGGCGU---------- ||||| |||||| | agccccAGCCCCAGCCCCACCTCCTGGGTTT Thoc3 mmu-miR-761 414 444 ACACA---GUCAA----A--GUGGGACGACG ||||| ||||| | | ||| ||||| TGTGTTAGCAGTTCCCATCCCTCCCCGCTGC Thoc3 mmu-miR-762 364 386 CGA-GACAGGGCCGGGGUCGGGG ||| | | ||| ||||||||||| GCTCCAGCCCCAGCCCCAGCCCC Thoc3 mmu-miR-764-3p 37 60 uGUCAACG-GUGAUA---CCGGAGGA |:| || ||||| |||: ||| cCGG--GCGGACTATTTGGGCTACCT Thoc3 mmu-miR-764-5p 174 192 uccuCCUGUACACUCGUGG |||| ||| :||||| ttttGGACTTGTAGGCACC Thoc3 mmu-miR-770-3p 367 389 GGUCGAGGU-GCAGUCCGGGUGc ||||| ||| | ||| ||||| CCAGCCCCAGCCCCAGCCCCACc Thoc3 mmu-miR-92 131 146 gUCCGGCCCUGUUCACGUuau ||||:|| ||||| gAGGCTGG-----GTGCAgac

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Thoc3 RAID00162098 mmu-miR-7226-3p miRNA MIMAT0028421 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID00200700 mmu-miR-133a-3p miRNA MIMAT0000145 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID00503769 mmu-miR-342-3p miRNA MIMAT0000590 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID00573309 mmu-miR-6932-3p miRNA MIMAT0027765 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID00594705 mmu-miR-488-3p miRNA MIMAT0003450 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID00614934 mmu-miR-30c-5p miRNA MIMAT0000514 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID00741320 mmu-miR-133b-3p miRNA MIMAT0000769 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID00816894 mmu-miR-139-5p miRNA MIMAT0000656 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID00880427 mmu-miR-7039-3p miRNA MIMAT0027983 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID01311548 mmu-miR-7017-3p miRNA MIMAT0027939 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID01408991 mmu-miR-30b-5p miRNA MIMAT0000130 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID01525625 mmu-miR-7032-3p miRNA MIMAT0027969 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID02063230 mmu-miR-384-5p miRNA MIMAT0004745 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID02163221 mmu-miR-425-5p miRNA MIMAT0004750 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID02329847 mmu-miR-30a-5p miRNA MIMAT0000128 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID02391297 mmu-miR-30d-5p miRNA MIMAT0000515 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID02531702 mmu-miR-7229-3p miRNA MIMAT0028427 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID02653899 mmu-miR-546 miRNA MIMAT0003166 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID02656368 mmu-miR-471-3p miRNA MIMAT0017195 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID02756321 mmu-miR-9-5p miRNA MIMAT0000142 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID02779108 mmu-miR-3067-5p miRNA MIMAT0014840 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID02915538 mmu-miR-26a-2-3p miRNA MIMAT0017058 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID03195856 mmu-miR-30e-5p miRNA MIMAT0000248 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID03211135 mmu-miR-340-5p miRNA MIMAT0004651 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID03320184 mmu-miR-216a-5p miRNA MIMAT0000662 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID03324828 mmu-miR-489-3p miRNA MIMAT0003112 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID03325396 mmu-miR-7655-3p miRNA MIMAT0029817 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID03391273 mmu-miR-7052-3p miRNA MIMAT0028009 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID03466629 mmu-miR-872-3p miRNA MIMAT0004935 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID03820354 mmu-miR-26b-3p miRNA MIMAT0004630 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID03850572 mmu-miR-7065-3p miRNA MIMAT0028035 Thoc3 mRNA 73666 Prediction 0.1828 Thoc3 RAID03935585 mmu-miR-129-5p miRNA MIMAT0000209 Thoc3 mRNA 73666 Prediction 0.1828