DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Kbtbd3; Bklhd3 ATTTA 127-1950 2193-2197;2203-2207

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 69149 Kbtbd3 cgACGUUUGUAGGC---UGACUUUc ||:| |: || | ||||||| uaUGUAUAUCUCAGCACACUGAAAu 2 21 55 79 [mm9:9:4331506-4331530:+] 0.5243 151 7 -9.64 -0.6160 MIMAT0000137 mmu-miR-126-5p 69149 Kbtbd3 gcgcaugguuuucaUUAUUAc |||||| auaaauucauguucAAUAAUc 2 8 182 202 [mm9:9:4331633-4331653:+] 0.5465 120 6 -2.02 -0.1296 MIMAT0004539 mmu-miR-183* 69149 Kbtbd3 aauaccgggaagccaUUAAGUg |||||| guuuuguuaaauauaAAUUCAu 2 8 170 191 [mm9:9:4331621-4331642:+] 0.5465 120 6 -6.06 -0.1791 MIMAT0000249 mmu-miR-30e* 69149 Kbtbd3 cgACAUUUGUAGGC---UGACUUUc |||| |: || | ||||||| uaUGUAUAUCUCAGCACACUGAAAu 2 21 55 79 [mm9:9:4331506-4331530:+] 0.5243 155 7 -10.15 -0.6160 MIMAT0000378 mmu-miR-300 69149 Kbtbd3 cuucucucgaacggGAACGUAu :|||||| ------aaguaauaUUUGCAUg 2 9 1 16 [mm9:9:4331452-4331467:+] 0.5319 124 6 -9.40 -0.1120 MIMAT0004579 mmu-miR-302a* 69149 Kbtbd3 cguUCAUGUUGGUGCAAAUUca ||| : | |||||| gacAGUUUCCAGAAGUUUAAaa 3 20 127 148 [mm9:9:4331578-4331599:+] 0.5243 123 0 -8.26 -0.2207 MIMAT0004623 mmu-let-7f* 69149 Kbtbd3 ccCUU--CCGUUAUCUA-ACAUAUc ||| ||: | | || |||||| uaGAAUUGGUUAAAAAUAUGUAUAu 2 21 39 63 [mm9:9:4331490-4331514:+] 0.5281 123 6 -5.44 -0.8446 MIMAT0004627 mmu-miR-20a* 69149 Kbtbd3 gaAAUUCACGAG-CAUUACGUCa || | ||:|| |||| ||| aaUUCA-UGUUCAAUAAUCCAGa 2 21 185 206 [mm9:9:4331636-4331657:+] 0.5465 125 0 -8.69 -0.1767 MIMAT0004627 mmu-miR-20a* 69149 Kbtbd3 gaAAUUCACGAGCAUUACGUca |||| : | |||||| guUUAA-AAUACAAAAUGCAuu 3 21 141 161 [mm9:9:4331592-4331612:+] 0.5243 122 0 -4.13 -0.1874 MIMAT0000549 mmu-miR-322* 69149 Kbtbd3 cacaacgucgcgAAGUACAAa |||||||| guuaaauauaaaUUCAUGUUc 2 10 175 195 [mm9:9:4331626-4331646:+] 0.5465 145 7 -7.91 -1.2513 MIMAT0004640 mmu-miR-325 69149 Kbtbd3 aaCUAUCCUCCACGAGUUAUUu ||| | | | |||||||| uaGAU-GUAUGCUCUCAAUAAa 2 21 104 124 [mm9:9:4331555-4331575:+] 0.5243 154 7 -11.69 -0.9960 MIMAT0004640 mmu-miR-325 69149 Kbtbd3 aacuauccuccACGAGUUAUUu ||:||||||| auauaaauucaUGUUCAAUAAu 2 12 180 201 [mm9:9:4331631-4331652:+] 0.5465 151 7 -10.01 -1.0460 MIMAT0004665 mmu-miR-218-1* 69149 Kbtbd3 ccACGAACUGCCUU--GGUACAAa ||:| |: || :|||||| uuUGUUAAAUAUAAAUUCAUGUUc 2 21 172 195 [mm9:9:4331623-4331646:+] 0.5465 131 6 -7.05 -0.3712 MIMAT0004670 mmu-miR-7a* 69149 Kbtbd3 auaccgucugacacuAAACAAc |||||| gcauuuuaucaaaguUUUGUUa 2 8 157 178 [mm9:9:4331608-4331629:+] 0.5354 120 6 -2.38 -0.3108 MIMAT0001093 mmu-miR-411* 69149 Kbtbd3 ccaaucaccuggcacAAUGUAu |||||| guucaauaauccagaUUACAUa 2 8 192 213 [mm9:9:4331643-4331664:+] 0.5465 120 6 -7.36 -0.1835 MIMAT0001093 mmu-miR-411* 69149 Kbtbd3 ccaaucaccuggcacAAUGUAu |||||| cagauuuaugcuuauUUACAU- 2 8 240 260 [mm9:9:4331691-4331711:+] 0.5140 120 6 -3.67 -0.2359 MIMAT0001422 mmu-miR-434-3p 69149 Kbtbd3 uccucagcucacuacCAAGUUu |||||| uaaauauaaauucauGUUCAAu 2 8 177 198 [mm9:9:4331628-4331649:+] 0.5465 120 6 -4.45 -0.2092 MIMAT0002106 mmu-miR-465a-5p 69149 Kbtbd3 agUGUAGUCACGGUA-AGAUUUAu |:| :| | :| | | ||||| acAUAGUAUUUUCUUAUAUAAAUa 2 22 209 232 [mm9:9:4331660-4331683:+] 0.5465 120 0 -8.16 -0.1233 MIMAT0002107 mmu-miR-466a-3p 69149 Kbtbd3 agaauacacacgcacAUACAUAu ||||||| agaauugguuaaaaaUAUGUAUa 2 9 40 62 [mm9:9:4331491-4331513:+] 0.5281 140 7 -7.07 -1.1911 MIMAT0002108 mmu-miR-467a-1* 69149 Kbtbd3 cacauccacacacAUACAUAUa |||||||| aauugguuaaaaaUAUGUAUAu 2 10 42 63 [mm9:9:4331493-4331514:+] 0.5281 145 7 -9.82 -0.9981 MIMAT0003186 mmu-miR-369-3p 69149 Kbtbd3 uuUCUAGUUGGUA-CAUAAUAa ||||:| ||| ||||| | ccAGAUUA--CAUAGUAUUUUc 2 20 202 221 [mm9:9:4331653-4331672:+] 0.5465 127 0 -8.60 -0.1407 MIMAT0003373 mmu-miR-302b* 69149 Kbtbd3 ucUUUCGUAAGG-GUACAAUUUCa :|| ::|||| :|| |||||| cuGAAAUGUUCCUUAUAUUAAAGa 2 22 73 96 [mm9:9:4331524-4331547:+] 0.5243 140 6 -11.74 -0.1853 MIMAT0003373 mmu-miR-302b* 69149 Kbtbd3 ucuuUCGUAAGGGUACAAUUUca | || :: ||||||| uuuuAUCAAAGUUUUGUUAAAua 3 20 160 182 [mm9:9:4331611-4331633:+] 0.5354 127 0 -4.17 -0.4897 MIMAT0003373 mmu-miR-302b* 69149 Kbtbd3 ucuUUCGUAAGGGUA--CAAUUUca || :| | || |||||| ugcAACUAGUAGAAUUGGUUAAAaa 3 21 30 54 [mm9:9:4331481-4331505:+] 0.5281 123 0 -5.24 -0.1354 MIMAT0003375 mmu-miR-302c* 69149 Kbtbd3 cguccauuGGGGUACAAUUUCg ||::|| |||||| gaaauguuCCUUAUAUUAAAGa 2 15 75 96 [mm9:9:4331526-4331547:+] 0.5243 130 6 -11.87 -0.1906 MIMAT0003375 mmu-miR-302c* 69149 Kbtbd3 cguccaUUGGGGUACAAUUUcg || :: ||||||| uuuaucAAAGUUUUGUUAAAua 3 17 161 182 [mm9:9:4331612-4331633:+] 0.5354 128 0 -4.17 -0.4897 MIMAT0003375 mmu-miR-302c* 69149 Kbtbd3 cgucCAUUGGGGUACAAUUUcg |||: ::: |||||| acuaGUAGAAUUG-GUUAAAaa 3 19 34 54 [mm9:9:4331485-4331505:+] 0.5281 124 0 -6.60 -0.1255 MIMAT0003728 mmu-miR-374* 69149 Kbtbd3 gaGCCUGUUACUAUUAUGUUgg | || : | | ||||||| ucCAGAAGUUUAAAAUACAAaa 3 21 134 155 [mm9:9:4331585-4331606:+] 0.5243 136 0 -5.29 -0.2291 MIMAT0003474 mmu-miR-694 69149 Kbtbd3 gaAGUCCGUUGUAAAAGuc |:| :|::|||||| gaUUACAUAGUAUUUUCuu 3 18 205 223 [mm9:9:4331656-4331674:+] 0.5465 133 0 -7.30 -0.2513 MIMAT0003476 mmu-miR-669b 69149 Kbtbd3 uguacguguacgUGUGUUUUGa |:||||||: cagaaguuuaaaAUACAAAAUg 2 11 136 157 [mm9:9:4331587-4331608:+] 0.5243 130 0 -7.89 -0.1726 MIMAT0003478 mmu-miR-467b* 69149 Kbtbd3 cacAACC-ACACACAUACAUAUa |||| | |||||||| gaaUUGGUUAAAAAUAUGUAUAu 2 20 41 63 [mm9:9:4331492-4331514:+] 0.5281 146 7 -13.02 -0.9981 MIMAT0003479 mmu-miR-669c 69149 Kbtbd3 ugUGUGUAGGUGU--GUGUUGAUa | | ||:| | ::|||||| ugAGAGCUCUAAAAUUGCAACUAg 2 21 15 38 [mm9:9:4331466-4331489:+] 0.5319 131 6 -8.80 -0.1407 MIMAT0004827 mmu-miR-297b-3p 69149 Kbtbd3 auacccauacacacAUACAUAu ||||||| gaauugguuaaaaaUAUGUAUa 2 9 41 62 [mm9:9:4331492-4331513:+] 0.5281 140 7 -9.72 -1.1911 MIMAT0003497 mmu-miR-707 69149 Kbtbd3 gcauccguucgccgUACUGAc |||||| ccuuauauuaaagaAUGACUa 2 8 83 103 [mm9:9:4331534-4331554:+] 0.5243 120 6 -7.77 -0.1681 MIMAT0004236 mmu-miR-741 69149 Kbtbd3 agauGUAUCUUACCGUA-GAGAGu :|||| || |:|| ||||| ugacUAUAG-AU-GUAUGCUCUCa 2 20 98 119 [mm9:9:4331549-4331570:+] 0.5243 123 0 -17.19 -1.2808 MIMAT0004846 mmu-miR-881 69149 Kbtbd3 agAUAAGUCUUUUCUGUGUCAa || || |:| |||:||| aaUAAUC-CAGAUUACAUAGUa 2 21 196 216 [mm9:9:4331647-4331667:+] 0.5465 134 0 -11.33 -0.1559 MIMAT0004848 mmu-miR-883a-5p 69149 Kbtbd3 cauugacgAUGAAGAGAGUCGu |:: | ||||||| uaaaaauaUGUAUAUCUCAGCa 2 15 49 70 [mm9:9:4331500-4331521:+] 0.5243 146 7 -13.76 -1.2248 MIMAT0004850 mmu-miR-883b-5p 69149 Kbtbd3 acugacgAUGGGUA-AGAGUCau ||: :|| |||||| uuaaaaaUAUGUAUAUCUCAGca 3 16 48 70 [mm9:9:4331499-4331521:+] 0.5281 130 0 -11.23 -0.1155 MIMAT0004864 mmu-miR-297a* 69149 Kbtbd3 auacccauacacacAUACAUAu ||||||| gaauugguuaaaaaUAUGUAUa 2 9 41 62 [mm9:9:4331492-4331513:+] 0.5281 140 7 -9.72 -1.1911 MIMAT0004866 mmu-miR-297c* 69149 Kbtbd3 auacccauacacacAUACAUAu ||||||| gaauugguuaaaaaUAUGUAUa 2 9 41 62 [mm9:9:4331492-4331513:+] 0.5281 140 7 -9.72 -1.1911 MIMAT0004876 mmu-miR-466b-3p 69149 Kbtbd3 agaauacacacgcacAUACAUAu ||||||| agaauugguuaaaaaUAUGUAUa 2 9 40 62 [mm9:9:4331491-4331513:+] 0.5281 140 7 -7.07 -1.1911 MIMAT0005453 mmu-miR-466b-3-3p 69149 Kbtbd3 agaauacacacgcacAUACAUAa ||||||| agaauugguuaaaaaUAUGUAUa 2 9 40 62 [mm9:9:4331491-4331513:+] 0.5281 140 7 -4.81 -1.1911 MIMAT0004878 mmu-miR-466c-3p 69149 Kbtbd3 agaauacacacgcacAUACAUAu ||||||| agaauugguuaaaaaUAUGUAUa 2 9 40 62 [mm9:9:4331491-4331513:+] 0.5281 140 7 -7.07 -1.1911 MIMAT0004880 mmu-miR-466e-3p 69149 Kbtbd3 agaauacacacgcacAUACAUAu ||||||| agaauugguuaaaaaUAUGUAUa 2 9 40 62 [mm9:9:4331491-4331513:+] 0.5281 140 7 -7.07 -1.1911 MIMAT0004887 mmu-miR-467d* 69149 Kbtbd3 cacauccacacacAUACAUAUa |||||||| aauugguuaaaaaUAUGUAUAu 2 10 42 63 [mm9:9:4331493-4331514:+] 0.5281 145 7 -9.82 -0.9981 MIMAT0004892 mmu-miR-568 69149 Kbtbd3 cacaCAUAUGUAAAUAUGUa |||| : |||||:| cauaGUAUUUUCUUAUAUAa 2 17 210 229 [mm9:9:4331661-4331680:+] 0.5465 136 0 -6.16 -0.1183 MIMAT0004931 mmu-miR-466d-3p 69149 Kbtbd3 gauacacacgcacAUACAUAu ||||||| aauugguuaaaaaUAUGUAUa 2 9 42 62 [mm9:9:4331493-4331513:+] 0.5281 140 7 -7.07 -1.1911 MIMAT0005294 mmu-miR-467e* 69149 Kbtbd3 uauauccacacacAUACAUAUa |||||||| aauugguuaaaaaUAUGUAUAu 2 10 42 63 [mm9:9:4331493-4331514:+] 0.5281 145 7 -10.20 -0.9981 MIMAT0005830 mmu-miR-466l 69149 Kbtbd3 uuaUACACACGUACAUAAAUau || | ||| | |||||| cagAUUUAUGC-U-UAUUUAca 3 20 240 259 [mm9:9:4331691-4331710:+] 0.5140 131 0 -3.32 -0.3393 MIMAT0005831 mmu-miR-669k 69149 Kbtbd3 aacguacgcacauaUACGUAu |||||| guuuaaaauacaaaAUGCAUu 2 8 141 161 [mm9:9:4331592-4331612:+] 0.5243 120 6 -5.84 -0.2255 MIMAT0005839 mmu-miR-669f 69149 Kbtbd3 uaugcacacacacAUACAUAUAc ||||||||| aauugguuaaaaaUAUGUAUAUc 2 11 42 64 [mm9:9:4331493-4331515:+] 0.5281 150 7 -7.38 -1.0355 MIMAT0005842 mmu-miR-669h-3p 69149 Kbtbd3 acacguacacacauaUACGUAu |||||| aguuuaaaauacaaaAUGCAUu 2 8 140 161 [mm9:9:4331591-4331612:+] 0.5243 120 6 -5.84 -0.2297 MIMAT0005845 mmu-miR-466k 69149 Kbtbd3 agUGUACAUGUACAUGU-GUGUGu |:|||||:|| | || ||||| aaAUAUGUAUAUCU-CAGCACACu 2 22 52 74 [mm9:9:4331503-4331525:+] 0.5243 139 0 -18.65 -0.7888 MIMAT0005854 mmu-miR-467g 69149 Kbtbd3 uauauacacacacAUACAUAu ||||||| aauugguuaaaaaUAUGUAUa 2 9 42 62 [mm9:9:4331493-4331513:+] 0.5281 140 7 -7.07 -1.1894 MIMAT0007864 mmu-miR-1897-5p 69149 Kbtbd3 ggGGGAGAAAGAGGUAGGUUUc :| | || : |||||:| auUCAUGUUCAAUAAUCCAGAu 2 21 186 207 [mm9:9:4331637-4331658:+] 0.5465 128 0 -11.26 -0.1057 MIMAT0009419 mmu-miR-669m 69149 Kbtbd3 uauacaaacacaccUACAUAUa ||||||| aauugguuaaaaauAUGUAUAu 2 9 42 63 [mm9:9:4331493-4331514:+] 0.5281 140 7 -7.04 -1.0010 MIMAT0011214 mmu-miR-2138 69149 Kbtbd3 uaaggcgguucggGCAAGGGAa :|||||:| cagcacacugaaaUGUUCCUUa 2 10 66 87 [mm9:9:4331517-4331538:+] 0.5243 125 0 -13.15 -0.1009 MIMAT0015640 mmu-miR-3470a 69149 Kbtbd3 ggucggaccAGAU-GUUUCAcu |:|| |||||| aaaaugcauUUUAUCAAAGUuu 3 13 152 173 [mm9:9:4331603-4331624:+] 0.5354 127 0 -6.36 -0.1684 MIMAT0015644 mmu-miR-1186b 69149 Kbtbd3 caccACGUAC-GGAAAUUAGGgu | |||| :| |||||| uaaaUUCAUGUUCAAUAAUCCag 3 19 183 205 [mm9:9:4331634-4331656:+] 0.5465 133 0 -12.37 -0.2333 MIMAT0000141 mmu-miR-130a 69149 Kbtbd3 uacgggaAAAUUGUAACG-UGAc | ||| ||||| ||| ugagagcUCUAAAAUUGCAACUa 2 16 15 37 [mm9:9:4331466-4331488:+] 0.5319 123 0 -12.05 -1.1239 MIMAT0000233 mmu-miR-200b 69149 Kbtbd3 agUAGUAAUGGUCCGUCAUAAu ||| |::| :|||||| uaAUCCAGAUUACAUAGUAUUu 2 21 198 219 [mm9:9:4331649-4331670:+] 0.5465 136 6 -10.28 -0.1952 MIMAT0000657 mmu-miR-200c 69149 Kbtbd3 agguagUAAUGGGCCGUCAUAAu ||||| :|||||| auccagAUUAC---AUAGUAUUu 2 18 200 219 [mm9:9:4331651-4331670:+] 0.5465 129 6 -15.29 -0.1952 MIMAT0000667 mmu-miR-33 69149 Kbtbd3 acguuacguugaugUUACGUg |||||| aguuuaaaauacaaAAUGCAu 2 8 140 160 [mm9:9:4331591-4331611:+] 0.5243 120 6 -7.54 -0.2248 MIMAT0003151 mmu-miR-378 69149 Kbtbd3 ggAAGACUGAGGU-UCAGGUCa ||| ::|| | | ||||| aaUUCAUGUUCAAUAAUCCAGa 2 20 185 206 [mm9:9:4331636-4331657:+] 0.5465 122 0 -11.20 -0.1479 MIMAT0000746 mmu-miR-381 69149 Kbtbd3 ugUCUCUCGAACGGGAACAUAu | | ||: | ::||| ||| uuACAUAGUAUUUUCUUAUAUa 2 21 207 228 [mm9:9:4331658-4331679:+] 0.5465 124 0 -7.25 -0.1794 MIMAT0001091 mmu-miR-410 69149 Kbtbd3 uguccgGUAGACACAAUAUAa :||:| | |||||| acauagUAUUU-UCUUAUAUa 2 16 209 228 [mm9:9:4331660-4331679:+] 0.5465 121 6 -4.47 -0.5464 MIMAT0001537 mmu-miR-429 69149 Kbtbd3 ugccguaaUGGUCUGUCAUAAu |::| |:|||||| uaauccagAUUACAUAGUAUUu 2 15 198 219 [mm9:9:4331649-4331670:+] 0.5465 138 6 -12.36 -0.1952 MIMAT0003456 mmu-miR-495 69149 Kbtbd3 uucuucacgugguacAAACAAa |||||| gcauuuuaucaaaguUUUGUUa 2 8 157 178 [mm9:9:4331608-4331629:+] 0.5354 120 6 -5.11 -0.3056 MIMAT0004896 mmu-miR-590-3p 69149 Kbtbd3 ugaucgaauauguAUUUUAAu ||||||| ugcaugagagcucUAAAAUUg 2 9 11 31 [mm9:9:4331462-4331482:+] 0.5319 140 7 -6.56 -1.1401 MIMAT0004896 mmu-miR-590-3p 69149 Kbtbd3 ugaucgaaUAUGUAUUUUAau | :: |||||| guuuccagAAGUUUAAAAUac 3 14 131 151 [mm9:9:4331582-4331602:+] 0.5243 121 0 -3.67 -0.1319 MIMAT0004896 mmu-miR-590-3p 69149 Kbtbd3 ugaUCGAA--UAUGUAU-UUUAAu ||:|| || ||| ||||| caaAGUUUUGUUAAAUAUAAAUUc 2 19 166 189 [mm9:9:4331617-4331640:+] 0.5354 121 0 -4.29 -1.1556 MIMAT0004936 mmu-miR-873 69149 Kbtbd3 uccUCUGAGUGUUCAAGGAcg | ||| | | |||||| agcACACUGAAAUGUUCCUua 3 19 67 87 [mm9:9:4331518-4331538:+] 0.5243 138 0 -10.14 -0.2372 MIMAT0005850 mmu-miR-1192 69149 Kbtbd3 uuaaaccagacaaacAAACAAa |||||| gcauuuuaucaaaguUUUGUUa 2 8 157 178 [mm9:9:4331608-4331629:+] 0.5354 120 6 -2.26 -0.3056

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G039000 Kbtbd3 Mus musculus 69149

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Kbtbd3 mcmv-miR-m21-1 beg:71 end:89 pic:3' GCCGAACTTGCACAGGGGATA 5'& |||| |||.||.||| &5' -----TGAAA-TGTTCCTTAT 3' Kbtbd3 mghv-miR-M1-6 beg:112 end:136 pic:3' TTTTGGTG-GAGTG-------TGTCAAAGT 5'& .| |||| |||||||| &5' ------GCTCTCAATAAATAGACAGTTTC- 3' Kbtbd3 mmu-miR-18a beg:146 end:165 pic:3' GATAGACGTGATCTACGTGGAAT 5'& .|| |||||..||| &5' -------TACAAAATGCATTTTA 3' Kbtbd3 mmu-miR-18b beg:144 end:165 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& ||.| || |||||..||| &5' --AATA-CAAA--ATGCATTTTA 3' Kbtbd3 mmu-miR-196a beg:61 end:86 pic:3' GGGTTGTTGT-ACTTTGAT-GGAT 5'& |.||.| ||| |||||. ||| &5' CTCAGC-ACACTGAAATGTTCCT- 3' Kbtbd3 mmu-miR-196b beg:61 end:86 pic:3' GGGTTGT-TGTCCTTTGAT-GGAT 5'& |.||.|| || ||||. ||| &5' CTCAGCACACT-GAAATGTTCCT- 3' Kbtbd3 mmu-miR-200c beg:198 end:219 pic:3' AGGTAGTAATGGGCCGTCATAAT 5'& |||| ||||| .|||||| &5' TCCAG-ATTACA---TAGTATT- 3' Kbtbd3 mmu-miR-218 beg:52 end:73 pic:3' TGTACCAATCTAGTTCGTGTT 5'& |.||| || || |||||| &5' ATATGTATATCTC-AGCACA- 3' Kbtbd3 mmu-miR-30bstar beg:49 end:69 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& |||.|| .|.|||.||| &5' -----AAATATGTATATCTCAG 3' Kbtbd3 mmu-miR-380-3p beg:199 end:214 pic:3' TTCTACACCTGGTATGATGTAT 5'& ||| |.|||||| &5' ----------CCAGATTACATA 3' Kbtbd3 mmu-miR-467b beg:52 end:72 pic:3' GTATATGTAC-GTCCGTGAATG 5'& .||.||.|| || |||| &5' TATGTATATCTCA-GCAC---- 3' Kbtbd3 mmu-miR-467e beg:51 end:72 pic:3' TGTATATGTACGAGT-GTGAATA 5'& |.||.||.|| |||| ||| &5' ATATGTATAT-CTCAGCAC---- 3' Kbtbd3 mmu-miR-677 beg:62 end:78 pic:3' AGTCTTCGATTAGTA--GTGACTT 5'& ||| ||||||| &5' -----------TCAGCACACTGAA 3' Kbtbd3 mmu-miR-883a-5p beg:54 end:71 pic:3' CATTGACGATGAAGAGAGTCGT 5'& ||. |||||||| &5' -----TGTATA---TCTCAGCA 3' Kbtbd3 mmu-miR-325 beg:188 end:201 pic:3' AACTATCCTCCACGAGTTATTT 5'& ||.||||||| &5' -----------TGTTCAATAA- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Kbtbd3; Bklhd3 mmu-miR-124a 67 89 CCGUAAGUGGCG---CACGGAAU- ||| |||:| || ||||| AGCA--CACUGAAAUGUUCCUUAU Kbtbd3; Bklhd3 mmu-miR-18 60 89 -AUAGA--CGUGAU-CU--ACGUGGAAU- ||||| |||| || ||: ||||| AUAUCUCAGCACACUGAAAUGUUCCUUAU Kbtbd3; Bklhd3 mmu-miR-222 98 117 CUCUGGGUCAUCGGUCUACAU-CGA- |||: :||||||| ||| -UGACUA------UAGAUGUAUGCUC Kbtbd3; Bklhd3 mmu-miR-28 63 88 -GAGUUAUCUGACACU-CGAGGAA- ||||: |||| |:||||| UCUCAGCACACUGAAAUGUUCCUUA Kbtbd3; Bklhd3 mmu-miR-30e* 56 80 GACAUUUGUAGGC-----UGACUUUC ||| |:|||: ||||||| AUGU--AUAUCUCAGCACACUGAAAU Kbtbd3; Bklhd3 mmu-miR-322 172 196 ACAACGUCGCG-----AAGUACAAA |||: |||||||| -UUUGUUAAAUAUAAAUUCAUGUUC Kbtbd3; Bklhd3 mmu-miR-467a 37 65 CACAUCC--ACACAC-----AUACAUAUA- |||| || || ||||||||| -AGUAGAAUUG-GUUAAAAAUAUGUAUAUC Kbtbd3; Bklhd3 mmu-miR-467b 43 65 CACAACCACACAC-AUACAUAUA- ||||| ||||||||| --AUUGGUUAAAAAUAUGUAUAUC Kbtbd3; Bklhd3 mmu-miR-741 85 121 GAUGUA---UCUUAC---------CGUA-GAGAGU- ||:|| |||||| |:|| |||||| UUAUAUUAAAGAAUGACUAUAGAUGUAUGCUCUCAA Kbtbd3; Bklhd3 mmu-miR-30e* 72 79 G-------------------ACAUUUGUAGGC---UGACUUUC |||| |: || ||||||| AGUAGAAUUGGUUAAAAAUAUGUAUAUCUCAGCACACUGAAAU Kbtbd3; Bklhd3 mmu-miR-322 188 195 ---------------------ACAACGUCGCG--AAGUACAAA |||| |||||||| AAAUGCAUUUUAUCAAAGUUUUGUUAAAUAUAAAUUCAUGUUC Kbtbd3; Bklhd3 mmu-miR-467a 56 63 CACAU--------------------CCACACAC-AUACAUAUA ||| ||||||||| CUCUAAAAUUGCAACUAGUAGAAUUGGUUAAAAAUAUGUAUAUC Kbtbd3; Bklhd3 mmu-miR-467b 56 63 CAC--------------------AACCACACAC-AUACAUAUA ||||| ||||||||| CUCUAAAAUUGCAACUAGUAGAAUUGGUUAAAAAUAUGUAUAUC Kbtbd3; Bklhd3 mmu-miR-18 61 87 AUAGA--C--GUGA-UCUACGUGGAAU ||||| | |||| | |||: ||||| TATCTCAGCACACTGAAATGTTCCTTA Kbtbd3; Bklhd3 mmu-miR-222 93 115 cUCUGGGUCAUCGGUCUACAU-CGA ||| : | || :||||||| ||| aAGAATGACTA--TAGATGTATGCT Kbtbd3; Bklhd3 mmu-miR-28 64 86 GAGUUAUCUGACACU-CGAGGAA ||||: | |||| | |:||||| CTCAGCACACTGAAATGTTCCTT Kbtbd3; Bklhd3 mmu-miR-741 98 119 gaUG-UAUCUUACCGUA-GAGAGU || |||| || |:|| |||||| tgACTATAG-AT-GTATGCTCTCA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Kbtbd3 RAID00051867 mmu-miR-590-3p miRNA MIMAT0004896 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID00142336 mmu-miR-297c-3p miRNA MIMAT0004866 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID00165651 mmu-miR-669d-3p miRNA MIMAT0017324 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID00339674 mmu-miR-297a-3p miRNA MIMAT0004864 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID00485577 mmu-miR-802-5p miRNA MIMAT0004188 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID00737407 mmu-miR-378a-3p miRNA MIMAT0003151 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID00770530 mmu-miR-137-3p miRNA MIMAT0000149 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID00854478 mmu-miR-200b-3p miRNA MIMAT0000233 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID00902056 mmu-miR-6951-5p miRNA MIMAT0027802 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID01230695 mmu-miR-873a-5p miRNA MIMAT0004936 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID01278026 mmu-miR-429-3p miRNA MIMAT0001537 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID01446972 mmu-miR-325-3p miRNA MIMAT0004640 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID01880575 mmu-miR-466e-3p miRNA MIMAT0004880 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID01882238 mmu-miR-466d-3p miRNA MIMAT0004931 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID01886174 mmu-miR-466a-3p miRNA MIMAT0002107 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID01888531 mmu-miR-130a-3p miRNA MIMAT0000141 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID01900109 mmu-miR-297b-3p miRNA MIMAT0004827 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID02181960 mmu-miR-495-3p miRNA MIMAT0003456 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID02199499 mmu-miR-200c-3p miRNA MIMAT0000657 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID02208118 mmu-miR-1192 miRNA MIMAT0005850 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID02212072 mmu-miR-467g miRNA MIMAT0005854 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID02389413 mmu-miR-7093-3p miRNA MIMAT0028093 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID02479883 mmu-miR-410-3p miRNA MIMAT0001091 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID02483485 mmu-miR-6944-5p miRNA MIMAT0027788 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID02716339 mmu-miR-7660-3p miRNA MIMAT0029827 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID02963787 mmu-miR-381-3p miRNA MIMAT0000746 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID03217306 mmu-miR-33-5p miRNA MIMAT0000667 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID03416686 mmu-miR-186-5p miRNA MIMAT0000215 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID03504902 mmu-miR-7002-3p miRNA MIMAT0027907 Kbtbd3 mRNA 69149 Prediction 0.1828 Kbtbd3 RAID04492648 G730013B05Rik lncRNA 619312 Kbtbd3 protein 69149 Microarray//RNA-seq 0.6606