DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004522 mmu-miR-27b* 26754 Cops5 caagugguuagucgaUUCGAGa |||||| guguggaaggaaaagAAGCUCa 2 8 29 50 [mm9:1:10015010-10015031:-] 0.5958 120 6 -7.13 -0.2123 MIMAT0004527 mmu-miR-124* 26754 Cops5 uaguuccaGGCGACACU-UGUGc :| |||||| |||| uagcccacUCUCUGUGACACACc 2 15 357 379 [mm9:1:10022037-10022059:-] 0.5000 122 0 -13.15 -0.6116 MIMAT0004527 mmu-miR-124* 26754 Cops5 uaguuCCAGGCGACACU-UGUGc || | |: |||| |||| ucgcuGGGCAGUGGUGACACACg 2 18 1279 1301 [mm9:1:10021115-10021137:-] 0.5000 121 0 -19.64 -0.1663 MIMAT0000143 mmu-miR-9* 26754 Cops5 ugAAAGCCAAUAGAUCGAAAUa || :||| : |||||||| auUUAUGGUCG--UAGCUUUAu 2 21 910 929 [mm9:1:10021487-10021506:-] 0.5000 153 7 -14.61 -0.4596 MIMAT0000143 mmu-miR-9* 26754 Cops5 ugAAAGCCAAUAGAUCGAAAua |||: ||| |||||| caUUUU--UUA-AAAGCUUUuu 3 21 1184 1202 [mm9:1:10021214-10021232:-] 0.5000 123 0 -5.26 -0.1129 MIMAT0000154 mmu-miR-142-5p 26754 Cops5 ucaucACGAAAGAU-GAAAUAc | :|||:|| |||||| aagcuUUUUUUUUAUCUUUAUc 2 17 1194 1215 [mm9:1:10021201-10021222:-] 0.5000 128 6 -9.02 -0.8735 MIMAT0004537 mmu-miR-154* 26754 Cops5 uuaUCCAGUU--GGCACAUACUAa | ||| : ::||||||||| ugaAUGUCUGUUUUGUGUAUGAUa 2 20 1129 1152 [mm9:1:10021264-10021287:-] 0.5000 154 7 -16.86 -1.1820 MIMAT0004539 mmu-miR-183* 26754 Cops5 aauaCCGGGAAGCCAUUAAGUg |||| ||| ||||||| auggGGCCAUUC--UAAUUCAa 2 19 457 476 [mm9:1:10021940-10021959:-] 0.5000 159 7 -15.24 -0.2429 MIMAT0000234 mmu-miR-201 26754 Cops5 uucuuguuacggaauGACUCAu |||||| gugcuguguggugucCUGAGUa 2 8 98 119 [mm9:1:10014941-10014962:-] 0.5944 120 6 -13.93 -0.1437 MIMAT0000367 mmu-miR-291a-5p 26754 Cops5 ucuCUCCCGGAG-GU-------GAAACUAc |||| |:|| || ||||||| uccGAGGUCUUCACAGUAGGAUCUUUGAUg 2 20 500 529 [mm9:1:10021887-10021916:-] 0.5000 141 7 -21.10 -0.2647 MIMAT0004574 mmu-miR-294* 26754 Cops5 ucuaucCCGGAG--GUAAAACUCa ||::|: : ||||||| agguuuGGUUUUAGUUUUUUGAGa 2 17 674 697 [mm9:1:10021719-10021742:-] 0.5000 143 7 -17.36 -0.5125 MIMAT0004625 mmu-miR-16* 26754 Cops5 agucgucgugUCA-GUUAUGACc ||| ||||||| ccuagauagaAGUAGAAUACUGa 2 13 545 567 [mm9:1:10021849-10021871:-] 0.5000 143 7 -14.00 -0.7011 MIMAT0004628 mmu-miR-21* 26754 Cops5 cuGUCGGGUAG--CUGAC-GACAAc || :|| || || || ||||| ugCAUUCCUUCUUGAAUGUCUGUUu 2 21 1117 1141 [mm9:1:10021275-10021299:-] 0.5000 123 0 -13.56 -0.6224 MIMAT0004635 mmu-miR-92a* 26754 Cops5 caUUACGGUGGUUAGGGGUGGa ||| |:|| ||||||| cuAAU-CUACAUCCCCCCACCu 2 21 649 669 [mm9:1:10021747-10021767:-] 0.5000 150 7 -22.73 -0.3114 MIMAT0004636 mmu-miR-93* 26754 Cops5 gcccUUCACGAUCGAGUCGUCa || | | | :||||||| acucAACUUCCACUUCAGCAGa 2 19 60 81 [mm9:1:10022335-10022356:-] 0.5007 154 7 -12.55 -0.5182 MIMAT0000556 mmu-miR-324-3p 26754 Cops5 ucgucgugGACCCCGUCACc || |||||||| uucuuucgCU-GGGCAGUGg 2 13 1274 1292 [mm9:1:10021124-10021142:-] 0.5000 146 7 -23.09 -0.1416 MIMAT0004653 mmu-miR-342-5p 26754 Cops5 gaguuagugucUAUCGUGGGGa :||||||||| uugugugugcuGUAGCACCCCa 2 12 624 645 [mm9:1:10021771-10021792:-] 0.5000 151 7 -17.92 -0.5801 MIMAT0004660 mmu-miR-19a* 26754 Cops5 caucacGUUGAUACGUUUUGAu ||::|| ||||||| uuaaccCAGUUA-CCAAAACUc 2 17 61 81 [mm9:1:10014979-10014999:-] 0.5958 150 7 -9.66 -0.6760 MIMAT0004664 mmu-miR-214* 26754 Cops5 cgugUCGUUCACAUCUGUCCGu | | | | |||||||| ucggAUCCACAGGAGACAGGCa 2 19 287 308 [mm9:1:10022108-10022129:-] 0.5000 150 7 -22.21 -0.3261 MIMAT0004669 mmu-miR-125b-3p 26754 Cops5 ucgaGGGUUC-UCG----GAUUGGGca |:|||| | | :|||||| gaagCUCAAGUAACACUUUUAACCCag 3 19 43 69 [mm9:1:10014991-10015017:-] 0.5958 124 0 -17.69 -0.1287 MIMAT0003387 mmu-miR-376a* 26754 Cops5 ugaguaucuuccucUUAGAUGg ||||||| agcaccccauugcuAAUCUACa 2 9 637 658 [mm9:1:10021758-10021779:-] 0.5000 140 7 -10.06 -0.3764 MIMAT0000745 mmu-miR-380-3p 26754 Cops5 uucuacaccugguAUGAUGUAu |||||||| uucuaauucaaacUACUACAUc 2 10 466 487 [mm9:1:10021929-10021950:-] 0.5000 145 7 -8.56 -0.2369 MIMAT0001093 mmu-miR-411* 26754 Cops5 ccAAUCACCUG-GCACAAUGUAu ||| | || || ||||||| uaUUAAU--ACUCGGGUUACAUg 2 21 927 947 [mm9:1:10021469-10021489:-] 0.5000 152 7 -12.49 -0.1131 MIMAT0002107 mmu-miR-466a-3p 26754 Cops5 agAAUACACACGCACAUACAUAu |||| | | : ||||||||| uuUUAUCUUUAUCUGUAUGUAUg 2 22 1203 1225 [mm9:1:10021191-10021213:-] 0.5000 169 7 -12.57 -0.2818 MIMAT0003129 mmu-miR-485* 26754 Cops5 cucuccucucGGCACAUACUGa ::||||||||: aaugucuguuUUGUGUAUGAUa 2 13 1131 1152 [mm9:1:10021264-10021285:-] 0.5000 136 0 -12.60 -0.1556 MIMAT0003189 mmu-miR-291b-5p 26754 Cops5 ccuCUCCCGGAG-GU-------GAAACUAg |||| |:|| || ||||||| uccGAGGUCUUCACAGUAGGAUCUUUGAUg 2 20 500 529 [mm9:1:10021887-10021916:-] 0.5000 141 7 -18.13 -0.2647 MIMAT0003891 mmu-miR-770-3p 26754 Cops5 ggucGAGGUGCAGUCCGGGUGc :|||| | | ||||||| uccuUUCCAAG-CUGGCCCACu 2 19 403 423 [mm9:1:10021993-10022013:-] 0.5000 156 7 -24.74 -0.4517 MIMAT0014815 mmu-miR-3099* 26754 Cops5 guucCCGACC-UUCCUUCGAcc || || || |||||| guguGGAAGGAAAAGAAGCUca 3 18 29 50 [mm9:1:10015010-10015031:-] 0.5958 132 0 -15.04 -0.1584 MIMAT0003896 mmu-miR-763 26754 Cops5 cgGU-GACCAAGAAGGG-UCGACc || || | |||:|| ||||| caCACCUAAUCCUUUCCAAGCUGg 2 21 394 417 [mm9:1:10021999-10022022:-] 0.5000 127 0 -22.50 -0.1289 MIMAT0003897 mmu-miR-759 26754 Cops5 caguuuuAACAAACGUGAGACg | | | ||||||| cuagcccUGGAGUUCACUCUGg 2 16 708 729 [mm9:1:10021687-10021708:-] 0.5000 143 7 -11.98 -0.1116 MIMAT0003455 mmu-miR-679 26754 Cops5 ugguucUCAGUGGAGUGUCAGg | |::: ||||||| gaaugaACUUGUAGCACAGUCa 2 17 948 969 [mm9:1:10021447-10021468:-] 0.5000 144 7 -12.95 -0.3864 MIMAT0003461 mmu-miR-683 26754 Cops5 cuCCU--GUGUCGAAUGU-CGUCc ||| ||||| ||| |||| ucGGAUCCACAGGAGACAGGCAGa 2 20 287 310 [mm9:1:10022106-10022129:-] 0.5000 122 0 -17.59 -0.2716 MIMAT0003465 mmu-miR-719 26754 Cops5 uuguaaaaagaCAUCGGCUCUa |||||||||| cgggcuagagcGUAGCCGAGAg 2 12 259 280 [mm9:1:10022136-10022157:-] 0.5000 155 7 -19.66 -0.1631 MIMAT0003472 mmu-miR-693-5p 26754 Cops5 cuUUUG-AAAGCCUACACCGAc ||:| |||| ||||||| gaAAGCAUUUCAUCUGUGGCUc 2 20 180 201 [mm9:1:10022215-10022236:-] 0.5000 158 7 -17.99 -0.2316 MIMAT0004189 mmu-miR-693-3p 26754 Cops5 aauGUCGGUGUAGACUUUCGACg || :|| ||| ||||||| cacCAAGUACUUCUCAAAGCUGg 2 21 5 27 [mm9:1:10015033-10015055:-] 0.5016 164 7 -15.73 -0.4910 MIMAT0004189 mmu-miR-693-3p 26754 Cops5 aaugucGGUGUAGACUUUCGACg :||| || ||||||| aacccuUCACUGCU-AAAGCUGa 2 18 1084 1105 [mm9:1:10021311-10021332:-] 0.5000 151 7 -15.32 -0.3209 MIMAT0004189 mmu-miR-693-3p 26754 Cops5 aaUGUCGGUGUAGACUUUCGAcg |:||| : |:| |||||| cuAUAGCAUUUUUUAAAAGCUuu 3 22 1178 1200 [mm9:1:10021216-10021238:-] 0.5000 141 0 -12.26 -0.1173 MIMAT0005448 mmu-miR-467b 26754 Cops5 guAUAUGUACGUCCGUGAAUg | || || | ||||||| ucUUUA-AUCCCAGCACUUAg 2 20 1302 1321 [mm9:1:10021095-10021114:-] 0.5000 149 7 -9.27 -0.2146 MIMAT0004827 mmu-miR-297b-3p 26754 Cops5 auacccAUACACACAUACAUAu | | | ||||||||| uuuaucUUUAUCUGUAUGUAUg 2 17 1204 1225 [mm9:1:10021191-10021212:-] 0.5000 156 7 -10.95 -0.2746 MIMAT0003481 mmu-miR-695 26754 Cops5 aaguCAGUGGAUACGGGU-UAGa |||||| | |||| ||| gggcGUCACC-ACACCCACAUCc 2 19 796 817 [mm9:1:10021599-10021620:-] 0.5000 124 0 -18.36 -0.3251 MIMAT0003508 mmu-miR-501-5p 26754 Cops5 aaaguggguccCUGUUUCCUAa | |||||||| gaaguggaaauGUCAAAGGAUg 2 12 35 56 [mm9:1:10022360-10022381:-] 0.5007 147 7 -12.91 -0.1206 MIMAT0003512 mmu-miR-450b-3p 26754 Cops5 uaCGUACGUUUUACAAGGGUUa || ||| : ||||||| uuGCUUGCCUGCCAUUCCCAAg 2 21 86 107 [mm9:1:10022309-10022330:-] 0.5007 148 7 -14.27 -0.4609 MIMAT0004210 mmu-miR-804 26754 Cops5 agGUCCACUCCUUGUUGAGUgu || || | || |||||| ccCA-GUUACCAA-AACUCAga 3 21 65 84 [mm9:1:10014976-10014995:-] 0.5958 128 0 -12.53 -0.1409 MIMAT0004842 mmu-miR-879 26754 Cops5 ccgAAUCUCGAUA-UUCGGAGa | ||||:|:| ||||||| gugUCAGAGUUGUAAAGCCUCg 2 19 1053 1074 [mm9:1:10021342-10021363:-] 0.5000 165 7 -20.91 -0.1484 MIMAT0004846 mmu-miR-881 26754 Cops5 agauaaGUCUUUUCUGUGU-CAa ||| :: |||||| || gcugggCAGUGGUGACACACGUc 2 17 1281 1303 [mm9:1:10021113-10021135:-] 0.5000 120 0 -18.34 -0.3396 MIMAT0004863 mmu-miR-220 26754 Cops5 uucacagacugugACACCACc ||||||| gacuaaggugcugUGUGGUGu 2 9 91 111 [mm9:1:10014949-10014969:-] 0.5951 140 7 -18.11 -0.3512 MIMAT0004864 mmu-miR-297a* 26754 Cops5 auacccAUACACACAUACAUAu | | | ||||||||| uuuaucUUUAUCUGUAUGUAUg 2 17 1204 1225 [mm9:1:10021191-10021212:-] 0.5000 156 7 -10.95 -0.2746 MIMAT0004866 mmu-miR-297c* 26754 Cops5 auacccAUACACACAUACAUAu | | | ||||||||| uuuaucUUUAUCUGUAUGUAUg 2 17 1204 1225 [mm9:1:10021191-10021212:-] 0.5000 156 7 -10.95 -0.2746 MIMAT0004867 mmu-miR-327 26754 Cops5 uaggaguacgggGAGUUCa |||||| aaggaaaagaagCUCAAGu 2 8 35 53 [mm9:1:10015007-10015025:-] 0.5958 120 6 -9.77 -0.1055 MIMAT0004876 mmu-miR-466b-3p 26754 Cops5 agAAUACACACGCACAUACAUAu |||| | | : ||||||||| uuUUAUCUUUAUCUGUAUGUAUg 2 22 1203 1225 [mm9:1:10021191-10021213:-] 0.5000 169 7 -12.57 -0.2818 MIMAT0005453 mmu-miR-466b-3-3p 26754 Cops5 agAAUACACACGCACAUACAUAa |||| | | : ||||||||| uuUUAUCUUUAUCUGUAUGUAUg 2 22 1203 1225 [mm9:1:10021191-10021213:-] 0.5000 169 7 -10.44 -0.2818 MIMAT0004878 mmu-miR-466c-3p 26754 Cops5 agAAUACACACGCACAUACAUAu |||| | | : ||||||||| uuUUAUCUUUAUCUGUAUGUAUg 2 22 1203 1225 [mm9:1:10021191-10021213:-] 0.5000 169 7 -12.57 -0.2818 MIMAT0004880 mmu-miR-466e-3p 26754 Cops5 agAAUACACACGCACAUACAUAu |||| | | : ||||||||| uuUUAUCUUUAUCUGUAUGUAUg 2 22 1203 1225 [mm9:1:10021191-10021213:-] 0.5000 169 7 -12.57 -0.2818 MIMAT0004881 mmu-miR-466f-5p 26754 Cops5 guACGUGU-ACGUGUGUGUGCAu || :|| || |||||||| gcUGGGCAGUGGUGACACACGUc 2 21 1281 1303 [mm9:1:10021113-10021135:-] 0.5000 155 7 -17.72 -0.2524 MIMAT0004882 mmu-miR-466f-3p 26754 Cops5 cacACAUACACACACACAUAc ||| ||| | ||||||| gaaUGUCUGU-UUUGUGUAUg 2 19 1130 1149 [mm9:1:10021267-10021286:-] 0.5000 160 7 -15.23 -0.8038 MIMAT0004883 mmu-miR-466g 26754 Cops5 acacacacGUACACA-GACAUa ::||||| ||||| aagaaccuUGUGUGUGCUGUAg 2 14 617 638 [mm9:1:10021778-10021799:-] 0.5000 121 0 -15.84 -0.1106 MIMAT0004884 mmu-miR-466h 26754 Cops5 augUGUGUUCGUGUACGUGUGu |::: | : |||||||| gaaAUGUCAAAGGAUGCACACu 2 20 41 62 [mm9:1:10022354-10022375:-] 0.5007 147 7 -13.49 -0.3738 MIMAT0004893 mmu-miR-574-5p 26754 Cops5 ugugugAGUGU-GUGUGUGUGAGu ||| | |::||||||| gaaaugUCAAAGGAUGCACACUCa 2 18 41 64 [mm9:1:10022352-10022375:-] 0.5007 152 7 -17.22 -0.3464 MIMAT0004931 mmu-miR-466d-3p 26754 Cops5 gaUACACACGCACAUACAUAu || | | : ||||||||| uuAUCUUUAUCUGUAUGUAUg 2 20 1205 1225 [mm9:1:10021191-10021211:-] 0.5000 159 7 -11.62 -0.2818 MIMAT0004934 mmu-miR-872 26754 Cops5 ggacUUGAUUGUUCAUUG-GAa |:|| |||||||| || aagaAGCU--CAAGUAACACUu 2 18 41 60 [mm9:1:10015000-10015019:-] 0.5958 122 0 -14.02 -0.7716 MIMAT0005830 mmu-miR-466l 26754 Cops5 uuauacacacguacAUAAAUAu ||||||| cuggugaagcuccuUAUUUAUg 2 9 895 916 [mm9:1:10021500-10021521:-] 0.5000 140 7 -8.65 -0.1038 MIMAT0005832 mmu-miR-669g 26754 Cops5 uaguacaguuGUGUAUGUUACGu | | ||||||| gacacaccuuCUCCAACAAUGCc 2 14 372 394 [mm9:1:10022022-10022044:-] 0.5000 141 7 -10.37 -0.2773 MIMAT0005844 mmu-miR-466f 26754 Cops5 uguACGUGU-ACGUGUGUGUGCa || :|| || ||||||| cgcUGGGCAGUGGUGACACACGu 2 20 1280 1302 [mm9:1:10021114-10021136:-] 0.5000 150 7 -18.20 -0.1534 MIMAT0005846 mmu-miR-467f 26754 Cops5 acaUCCACAC-ACACACAUAUa | || || | |||||||: ugaAUGUCUGUUUUGUGUAUGa 2 19 1129 1150 [mm9:1:10021266-10021287:-] 0.5000 141 0 -10.68 -0.1331 MIMAT0005846 mmu-miR-467f 26754 Cops5 acAUCCAC-ACACACACA-UAUa || ||| || ||||| ||| aaUA-GUGAGGUUUGUGUAAUAa 2 20 1156 1177 [mm9:1:10021239-10021260:-] 0.5000 120 0 -10.88 -0.8772 MIMAT0005848 mmu-miR-466j 26754 Cops5 aauguguguacgugUACGUGUGu |||||||| ggaaaugucaaaggAUGCACACu 2 10 40 62 [mm9:1:10022354-10022376:-] 0.5007 145 7 -13.58 -0.3767 MIMAT0005848 mmu-miR-466j 26754 Cops5 aaUGUGUGUACG----UG-UAC-GUGUGu |||||| | | || ||| ||||| ugACACACCUUCUCCAACAAUGCCACACc 2 22 371 399 [mm9:1:10022017-10022045:-] 0.5000 123 0 -17.92 -0.6641 MIMAT0005851 mmu-miR-1193 26754 Cops5 cuAUCAUUUUGCCCAC-UGGAu || | ||||| ||| |||| agUAUUCAAACGUGUGAACCUa 2 20 436 457 [mm9:1:10021959-10021980:-] 0.5000 135 0 -17.44 -0.2487 MIMAT0005854 mmu-miR-467g 26754 Cops5 uaUAUACACACACAUACAUAu || | | | ||||||||| uuAUCUUUAUCUGUAUGUAUg 2 20 1205 1225 [mm9:1:10021191-10021211:-] 0.5000 163 7 -10.95 -0.2794 MIMAT0005858 mmu-miR-1197 26754 Cops5 ucUUCAUCUGGUA-CACAGGAu |:||: ::| ||||||| uaAGGUGCUGUGUGGUGUCCUg 2 20 94 115 [mm9:1:10014945-10014966:-] 0.5951 146 7 -16.58 -0.3666 MIMAT0005860 mmu-miR-1199 26754 Cops5 ggcgcgcuggcccUGAGUCu |||||| cccaguuaccaaaACUCAGa 2 8 65 84 [mm9:1:10014976-10014995:-] 0.5958 120 6 -16.17 -0.1750 MIMAT0007873 mmu-miR-1896 26754 Cops5 gagGAGUGGGUGGU---AGUC-UCUc ||||:::|||| |||| ||| gggCUCAUUUACCAUGGUCAGAAGAa 2 20 1227 1252 [mm9:1:10021164-10021189:-] 0.5000 130 0 -23.23 -0.6489 MIMAT0007873 mmu-miR-1896 26754 Cops5 gagGAGUGGGUGGU--AGUC-UCUc |||| |: ||| |||| ||| acaCUCAACUUCCACUUCAGCAGAc 2 20 58 82 [mm9:1:10022334-10022358:-] 0.5007 126 0 -21.14 -0.3528 MIMAT0009396 mmu-miR-1933-5p 26754 Cops5 uuUGAUUCUGGCUUGUGGUACUGa :| | ||| ||: ||||||| uuGCCAUGACAAAAUCCCAUGACc 2 23 134 157 [mm9:1:10022259-10022282:-] 0.5000 162 7 -16.57 -0.1839 MIMAT0009400 mmu-miR-1936 26754 Cops5 cggucaagugUCGUC--CAGUCAAu ||||| ||||||| gaagaaaauaAGCAGGAGUCAGUUc 2 14 1247 1271 [mm9:1:10021145-10021169:-] 0.5000 152 7 -16.22 -0.2733 MIMAT0009407 mmu-miR-1942 26754 Cops5 guuGGUCUACUUCUGUAGACu :|| | | ||||||| aauUCAAACUACUACAUCUGg 2 19 470 490 [mm9:1:10021926-10021946:-] 0.5000 146 7 -11.69 -0.2362 MIMAT0009426 mmu-miR-1955 26754 Cops5 uuuucGACGUCACGUAGGACC-CUGa ||| ||| || :|||| ||| uagccCUGGAGUUCACUCUGGAGACc 2 21 709 734 [mm9:1:10021682-10021707:-] 0.5000 136 0 -22.68 -0.1767 MIMAT0009432 mmu-miR-1959 26754 Cops5 gaGGUGACUCGAUGUAGGGg :::|| | ||||||||| caUUGCUAAUCUACAUCCCc 2 19 644 663 [mm9:1:10021753-10021772:-] 0.5000 162 7 -24.89 -0.1598 MIMAT0009433 mmu-miR-1960 26754 Cops5 ucgggagaagAUUGUCGUGACc || :||||||| guguccugagUAUUAGCACUGu 2 13 108 129 [mm9:1:10014931-10014952:-] 0.5944 148 7 -18.24 -1.0600 MIMAT0009434 mmu-miR-1961 26754 Cops5 aaGAUU--GAUGAUGGAGu ||:| :| ||||||| aaCUGAUUUUUCUACCUCc 2 16 866 884 [mm9:1:10021532-10021550:-] 0.5000 146 7 -17.36 -0.4723 MIMAT0009444 mmu-miR-1970 26754 Cops5 guuUCGGAUAGGGGUCACUGUGu |||| | :|:| ||||||| uauAGCCCACUCUCUGUGACACa 2 21 355 377 [mm9:1:10022039-10022061:-] 0.5000 168 7 -25.13 -0.2462 MIMAT0009444 mmu-miR-1970 26754 Cops5 guuuCGGAUAGGGGUCACUGUGu ||: : | ::||||||| uuucGCUGGGCAGUGGUGACACa 2 20 1277 1299 [mm9:1:10021117-10021139:-] 0.5000 147 7 -18.39 -0.1341 MIMAT0009456 mmu-miR-1839-5p 26754 Cops5 guuCUGGACAAGAUAGAUGGAa || ||| |:| ||||||| cuuGAACUGAUUUUUCUACCUc 2 20 862 883 [mm9:1:10021533-10021554:-] 0.5000 167 7 -15.65 -0.3517 MIMAT0011212 mmu-miR-2136 26754 Cops5 guguagaguCAGU--UGUGGGUc |||| ||||||| uaaaggggcGUCACCACACCCAc 2 13 791 813 [mm9:1:10021603-10021625:-] 0.5000 147 7 -15.61 -0.1061 MIMAT0011222 mmu-miR-2146 26754 Cops5 guGUACCUUG-GGAAGAGGUg ::|| || ||||||||| ucUGUGACACACCUUCUCCAa 2 19 367 387 [mm9:1:10022029-10022049:-] 0.5000 157 7 -20.05 -0.2592 MIMAT0012772 mmu-miR-599 26754 Cops5 caaacuauuugACUGUGUu ||||||| cccacucucugUGACACAc 2 9 360 378 [mm9:1:10022038-10022056:-] 0.5000 140 7 -8.59 -0.1152 MIMAT0015640 mmu-miR-3470a 26754 Cops5 ggUCGGACCAGAUGUUUCACu |||||||||||||||||| ccAGCCUGGUCUACAAAGUGa 2 20 1355 1375 [mm9:1:10021041-10021061:-] 0.5000 195 7 -43.08 -0.2640 MIMAT0015644 mmu-miR-1186b 26754 Cops5 caCCAC---GUACGGAAAUUAGGGu |||| || |:|||||||||| guGGUGACACACGUCUUUAAUCCCa 2 21 1289 1313 [mm9:1:10021103-10021127:-] 0.5000 171 7 -30.23 -0.3124 MIMAT0015644 mmu-miR-1186b 26754 Cops5 caccACGUACGGAAAUU-AGGGu | | |||| ||| |||| accaUACUGGCCUAUAACUCCCa 2 19 732 754 [mm9:1:10021662-10021684:-] 0.5000 122 0 -16.07 -0.2543 MIMAT0000121 mmu-let-7g 26754 Cops5 uuGACAUGUUU--GAUGAUGGAGu :|| || :| :| ||||||| ucUUGAACUGAUUUUUCUACCUCc 2 21 861 884 [mm9:1:10021532-10021555:-] 0.5000 151 7 -15.91 -0.4790 MIMAT0000122 mmu-let-7i 26754 Cops5 uuguCGUGUUU--GAUGAUGGAGu | || :| :| ||||||| ucuuGAACUGAUUUUUCUACCUCc 2 19 861 884 [mm9:1:10021532-10021555:-] 0.5000 145 7 -14.11 -0.4757 MIMAT0000126 mmu-miR-27b 26754 Cops5 cgucUUGAAUCGGU-GACACUu |:||| :|| |||||| agucAGCUUUUUCAUCUGUGAg 2 18 159 180 [mm9:1:10022236-10022257:-] 0.5000 125 6 -17.63 -0.3654 MIMAT0004528 mmu-miR-125a-3p 26754 Cops5 ccgaGGGUUCUUGGAGUG-GACa ||| :||: :|||| ||| cuagCCCUGGAG-UUCACUCUGg 2 19 708 729 [mm9:1:10021687-10021708:-] 0.5000 120 0 -20.26 -0.1052 MIMAT0000140 mmu-miR-128 26754 Cops5 uuuCUC-UGGCCAAGUGACAcu ||| |:: | |||||| ccuGAGUAUUAG--CACUGUaa 3 19 112 131 [mm9:1:10014929-10014948:-] 0.5944 122 0 -10.32 -0.2145 MIMAT0000140 mmu-miR-128 26754 Cops5 uuUCUCUGGCCAAGU-GACACu ||| | | |||| ||||| ugAGAAAGCAUUUCAUCUGUGg 2 20 177 198 [mm9:1:10022218-10022239:-] 0.5000 127 0 -16.33 -0.2256 MIMAT0000141 mmu-miR-130a 26754 Cops5 uaCGGGAAAAUUGUAA-CGUGAc |:|| | |::||| ||||| guGUCC--UGAGUAUUAGCACUg 2 21 108 128 [mm9:1:10014932-10014952:-] 0.5944 121 0 -23.82 -0.9871 MIMAT0000144 mmu-miR-132 26754 Cops5 gcuGGUACCGACAUCUGACAAu ||| | | |||||||| cuuCCACUUCAGCAGACUGUUu 2 20 66 87 [mm9:1:10022329-10022350:-] 0.5007 155 7 -13.72 -0.2766 MIMAT0000208 mmu-miR-10b 26754 Cops5 guguUUAAGCCAAGAUGUCCCAu |:||: | ||||||| uuuuAGUUUUUUGAGACAGGGUc 2 20 682 704 [mm9:1:10021712-10021734:-] 0.5000 147 7 -12.79 -0.1015 MIMAT0000210 mmu-miR-181a 26754 Cops5 ugaguggcugucgcAACUUACAa |||||||| ucaugcauuccuucUUGAAUGUc 2 10 1114 1136 [mm9:1:10021280-10021302:-] 0.5000 145 7 -10.82 -0.4660 MIMAT0000214 mmu-miR-185 26754 Cops5 agucCUUGAC-GGAAAGA--GAGGu |||||| ::||||| |||| ucuuGAACUGAUUUUUCUACCUCCu 2 19 861 885 [mm9:1:10021531-10021555:-] 0.5000 121 0 -20.92 -0.2211 MIMAT0000236 mmu-miR-203 26754 Cops5 gaucaccaggaUUUGUAAAGUg ||:||||||| caucugugagaAAGCAUUUCAu 2 12 171 192 [mm9:1:10022224-10022245:-] 0.5000 151 7 -14.12 -0.1442 MIMAT0004577 mmu-miR-299 26754 Cops5 uuCGCCAAAUGG-CAGGGUGUAu ||| | ||| ||||||| ggGCG--UCACCACACCCACAUc 2 21 796 816 [mm9:1:10021600-10021620:-] 0.5000 144 7 -19.03 -0.2645 MIMAT0000383 mmu-let-7d 26754 Cops5 uugauACGUUGGAUGAUGGAGa || | ::| ||||||| ugaacUG-AUUUUUCUACCUCc 2 18 864 884 [mm9:1:10021532-10021552:-] 0.5000 147 7 -15.18 -0.4757 MIMAT0000521 mmu-let-7a 26754 Cops5 uuGAUAUG--UUGGAUGAUGGAGu :|: || | ::| ||||||| ucUUGAACUGAUUUUUCUACCUCc 2 21 861 884 [mm9:1:10021532-10021555:-] 0.5000 147 7 -14.61 -0.4790 MIMAT0000522 mmu-let-7b 26754 Cops5 uuggUGUGUUGGAUGAUGGAGu || | ::| ||||||| uugaACUGAUUUUUCUACCUCc 2 19 863 884 [mm9:1:10021532-10021553:-] 0.5000 150 7 -13.76 -0.4757 MIMAT0000523 mmu-let-7c 26754 Cops5 uugguaugUUGGAUGAUGGAGu | ::| ||||||| uugaacugAUUUUUCUACCUCc 2 15 863 884 [mm9:1:10021532-10021553:-] 0.5000 146 7 -13.86 -0.4790 MIMAT0000524 mmu-let-7e 26754 Cops5 uuGAUAUG--UUGGAGGAUGGAGu :|: || | ::|:||||||| ucUUGAACUGAUUUUUCUACCUCc 2 21 861 884 [mm9:1:10021532-10021555:-] 0.5000 151 7 -18.61 -0.4790 MIMAT0000525 mmu-let-7f 26754 Cops5 uuGAUAUG--UUAGAUGAUGGAGu :|: || | |:| ||||||| ucUUGAACUGAUUUUUCUACCUCc 2 21 861 884 [mm9:1:10021532-10021555:-] 0.5000 151 7 -14.78 -0.4757 MIMAT0000537 mmu-miR-27a 26754 Cops5 cgccUUGAAUCGGU-GACACUu |:||| :|| |||||| agucAGCUUUUUCAUCUGUGAg 2 18 159 180 [mm9:1:10022236-10022257:-] 0.5000 125 6 -16.77 -0.3654 MIMAT0000545 mmu-miR-98 26754 Cops5 uugUUAUGUUGAAUGAUGGAGu || | :|| ||||||| uugAACUGAUUUUUCUACCUCc 2 20 863 884 [mm9:1:10021532-10021553:-] 0.5000 151 7 -14.10 -0.4790 MIMAT0000559 mmu-miR-326 26754 Cops5 ugaccuccuucccGGGUCUCc ||||||| cuggccuauaacuCCCAGAGa 2 9 738 758 [mm9:1:10021658-10021678:-] 0.5000 140 7 -17.18 -0.5355 MIMAT0000567 mmu-miR-329 26754 Cops5 uuuuuccaaUCGACCCACACAa |||| ||||||| acuucucaaAGCU-GGUGUGUg 2 14 13 33 [mm9:1:10015027-10015047:-] 0.5487 151 7 -18.95 -0.6187 MIMAT0004642 mmu-miR-330 26754 Cops5 cgGAUUCUGUG-UCCGGGUCUCu ||:: :|: | ||||||| uaCUGGCCUAUAACUCCCAGAGa 2 21 736 758 [mm9:1:10021658-10021680:-] 0.5000 143 7 -24.04 -0.5355 MIMAT0000584 mmu-miR-339-5p 26754 Cops5 gcACUCGAGGACCUCCUGUCCCu | ||:|::| || ||||||| uuUUAGUUUUUUGA-GACAGGGu 2 22 682 703 [mm9:1:10021713-10021734:-] 0.5000 163 7 -21.41 -0.1022 MIMAT0000648 mmu-miR-10a 26754 Cops5 guguuuAAGCCUAGAUGUCCCAu ||: || ||||||| uuaguuUUUUGA--GACAGGGUc 2 18 684 704 [mm9:1:10021712-10021732:-] 0.5000 142 7 -12.99 -0.1005 MIMAT0000653 mmu-miR-28 26754 Cops5 gaguuauCUGA-CAC-UCGAGGAa | || ||| ||||||| gagugcuGCCUGGUGAAGCUCCUu 2 16 886 909 [mm9:1:10021507-10021530:-] 0.5000 149 7 -17.93 -0.5833 MIMAT0000659 mmu-miR-212 26754 Cops5 accggcacuGACCUCUGACAAu | | |||||||| cuuccacuuCAGCAGACUGUUu 2 14 66 87 [mm9:1:10022329-10022350:-] 0.5007 149 7 -12.47 -0.2766 MIMAT0000666 mmu-miR-320 26754 Cops5 agcgggagaGUUGGGUCGAAAa | | :||||||| ucccaugacCCAGUCAGCUUUu 2 14 148 169 [mm9:1:10022247-10022268:-] 0.5000 145 7 -17.03 -0.2831 MIMAT0000666 mmu-miR-320 26754 Cops5 agcgggagaguugggUCGAAAa |||||| auagcauuuuuuaaaAGCUUUu 2 8 1180 1201 [mm9:1:10021215-10021236:-] 0.5000 120 6 -13.58 -0.1351 MIMAT0000671 mmu-miR-224 26754 Cops5 uuGCCUUGGUG-AUCACUGAAu | |: |:|| |||||||| gcCUGGUCUACAAAGUGACUUu 2 20 1358 1379 [mm9:1:10021037-10021058:-] 0.5000 154 7 -18.21 -0.2949 MIMAT0000673 mmu-miR-181b 26754 Cops5 uggguggcugucguuACUUACAa ||||||| ucaugcauuccuucuUGAAUGUc 2 9 1114 1136 [mm9:1:10021280-10021302:-] 0.5000 140 7 -12.16 -0.4660 MIMAT0000674 mmu-miR-181c 26754 Cops5 ugaguggcuguccAACUUACAa |||||||| caugcauuccuucUUGAAUGUc 2 10 1115 1136 [mm9:1:10021280-10021301:-] 0.5000 145 7 -9.42 -0.4560 MIMAT0004684 mmu-miR-362-3p 26754 Cops5 acUUAGGAACUU-GUCCACACAa | |:|| || | ||||||| guACUUCUCAAAGCUGGUGUGUg 2 21 11 33 [mm9:1:10015027-10015049:-] 0.5487 155 7 -15.06 -0.6436 MIMAT0000741 mmu-miR-377 26754 Cops5 uguuuucAACGGAAACA-CACUa |||:| |||| |||| guuuuguUUGUCCUUGUAGUGAg 2 16 579 601 [mm9:1:10021815-10021837:-] 0.5000 127 0 -11.94 -0.3229 MIMAT0003151 mmu-miR-378 26754 Cops5 ggAAGACUGAGGUUCAGGUCa | || :: ::||||||| ugUCCUUGUAGUGAGUCCAGg 2 20 587 607 [mm9:1:10021809-10021829:-] 0.5000 147 7 -16.05 -0.1103 MIMAT0000766 mmu-miR-335-5p 26754 Cops5 uguaaaaagcaauaACGAGAACu |||||||| ucauauagcaaggcUGCUCUUGa 2 10 844 866 [mm9:1:10021550-10021572:-] 0.5000 145 7 -14.18 -0.5670 MIMAT0001533 mmu-miR-448 26754 Cops5 uaccCUGU-AGGAUGUAUA-CGUu |||| ::| ||||| ||| cuuaGACAGGUUUUCAUAUAGCAa 2 19 831 854 [mm9:1:10021562-10021585:-] 0.5000 121 0 -14.56 -0.3675 MIMAT0003727 mmu-miR-374 26754 Cops5 gugaAUCGUCCAACAUAA-UAUa | |:|| || |||| ||| auggUCGUAGCUU-UAUUAAUAc 2 19 914 935 [mm9:1:10021481-10021502:-] 0.5000 120 0 -3.13 -0.2288 MIMAT0003738 mmu-miR-496 26754 Cops5 cucuaACCGGUA-CAUUAUGAGu | ||: | |||||||| ggucgUAGCUUUAUUAAUACUCg 2 18 916 938 [mm9:1:10021478-10021500:-] 0.5000 148 7 -15.28 -0.3809 MIMAT0003456 mmu-miR-495 26754 Cops5 uuCUUCA-C--GUGG-UAC-AAACAAa ||||| | :||: ||| |||||| uaGAAGUAGAAUACUGAUGUUUUGUUu 2 21 551 577 [mm9:1:10021839-10021865:-] 0.5000 125 6 -15.99 -0.4753 MIMAT0004828 mmu-miR-708 26754 Cops5 ggguCGAUCUAACA-UUCGAGGAa |||: | || |||||||| gaguGCUGCCUGGUGAAGCUCCUu 2 20 886 909 [mm9:1:10021507-10021530:-] 0.5000 158 7 -20.09 -0.5796 MIMAT0004324 mmu-miR-181d 26754 Cops5 uggguggcuguuguuACUUACAa ||||||| ucaugcauuccuucuUGAAUGUc 2 9 1114 1136 [mm9:1:10021280-10021302:-] 0.5000 140 7 -12.77 -0.4660 MIMAT0004869 mmu-miR-421 26754 Cops5 cgcGGGUUAAUUACAGACA-ACUa :|||| :| ||||| ||| uguUCCAACAGAAUUCUGUAUGAa 2 21 993 1016 [mm9:1:10021400-10021423:-] 0.5000 124 0 -12.89 -0.6805 MIMAT0004889 mmu-miR-504 26754 Cops5 cuAUCUCACGUCU-GGUCCCAGa ||| | : || ||||||| uuUAGUUUUUUGAGACAGGGUCu 2 21 683 705 [mm9:1:10021711-10021733:-] 0.5000 147 7 -18.56 -0.2224

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G005041 Cops5 Mus musculus 26754

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Cops5 mmu-miR-362-3p beg:15 end:33 pic:3' ACTTAGGAACTTGTCCACACAA 5'& ||. |.| ||||||| &5' ----TCTCAAAGCTGGTGTGT- 3' Cops5 mmu-miR-1274a beg:103 end:129 pic:3' ACCGC-GGACTTGTCCCTG-GACT 5'& |||.| |||||..| .| ||| &5' TGGTGTCCTGAGTATTAGCACTG- 3' Cops5 mmu-miR-1960 beg:107 end:129 pic:3' TCGGGAGAAGATTGTCGTGACC 5'& |.||| .||||||| &5' -GTCCTGAGTAT-TAGCACTG- 3' Cops5 mmu-miR-19astar beg:120 end:140 pic:3' CATCACGTTGATAC-GTTTTGAT 5'& || |||.| .||||||| &5' -----GC-ACTGTAATAAAACTA 3' Cops5 mmu-miR-200c beg:102 end:123 pic:3' AGGTAGTAATGGGCCGTCATAAT 5'& .| .| ||.| ||||||| &5' ---GTGGTGTCCTG--AGTATTA 3' Cops5 mmu-miR-201 beg:100 end:120 pic:3' TTCTTGTTACGGAATGACTCAT 5'& | . .||.| ||||||| &5' --GTGTGGTGTC---CTGAGTA 3' Cops5 mmu-miR-220 beg:93 end:111 pic:3' TTCACAGACTGTGACACCACC 5'& |.||| ||| ||||||| &5' AGGTG-CTG----TGTGGTG- 3' Cops5 mmu-miR-323-3p beg:93 end:112 pic:3' TCTCCAGCTGGCACATTACAC 5'& |||| .|.||||..||| &5' --AGGT--GCTGTGTGGTGT- 3' Cops5 mmu-miR-350 beg:92 end:118 pic:3' CTTTCAC-ATAC-CCGAAACACTT 5'& ||.||| |.|| ||. |||. &5' -AAGGTGCTGTGTGGTGTCCTGAG 3' Cops5 mmu-miR-377 beg:20 end:35 pic:3' TGTTTTCAACGGAAACACACTA 5'& ||. ||||||. &5' ---------GCTGGTGTGTGG- 3' Cops5 mmu-miR-429 beg:104 end:123 pic:3' TGCCGTAATGGTCTGTCATAAT 5'& ||..| || ||||||| &5' --GGTGT--CCTG--AGTATTA 3' Cops5 mmu-miR-488 beg:43 end:65 pic:3' CTG-GTTCTTTGTCGGAAAGTT 5'& .| |||| |||| ||||.|| &5' -GCTCAAGTAACA--CTTTTAA 3' Cops5 mmu-miR-546 beg:1 end:10 pic:3' CTGAGGCACGGTGGTA 5'& |||||| &5' ---------CCACCA- 3' Cops5 mmu-miR-671-3p beg:102 end:124 pic:3' CCACCTCGGGACTCTTGGCCT 5'& |||| |.|||||| |. | &5' -GTGGTGTCCTGAGTATTAG- 3' Cops5 mmu-miR-693-3p beg:7 end:27 pic:3' AATGTCGGTGTAGACTTTCGACG 5'& || .|| ||| ||||||| &5' ----AG-TACTTCTCAAAGCTG- 3' Cops5 mmu-miR-698 beg:30 end:46 pic:3' TCCCTTCCTTTGCTCTTAC 5'& ||||||||| |||| &5' --GGAAGGAAA--AGAA-- 3' Cops5 mmu-miR-712 beg:20 end:40 pic:3' CCATGGCGGGC-C-CA-CTTCCTC 5'& ||. | | || |||||| &5' ------GCTGGTGTGTGGAAGGA- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Cops5; Csn5; Jab1; Kic2 mmu-let-7e 225 247 -UGAUAU--GUUGGAGGAUGGAGU |:|:|: ||| ||||:||| UAUUGUGUUCAAA-UCCUGCCUA- Cops5; Csn5; Jab1; Kic2 mmu-miR-101a 79 107 GAAGUC-AAUAGUG-----UCAUGACAU- |||| ||| :||:||||: -CUCAGAUUAGAAGACUAAGGUGCUGUGU Cops5; Csn5; Jab1; Kic2 mmu-miR-101b 79 107 GAAGUC-GAUAGUG-----UCAUGACAU- |||| :|| :||:||||: -CUCAGAUUAGAAGACUAAGGUGCUGUGU Cops5; Csn5; Jab1; Kic2 mmu-miR-106a 91 129 AUGG----ACGUGACA--------------AUCGUGAAAC ||: ||| ||| ||||||| GACUAAGGUGCUGUGUGGUGUCCUGAGUAUUAGCACUG-- Cops5; Csn5; Jab1; Kic2 mmu-miR-130a 107 130 -UACGGGAAAAUUGUAA-CGUGAC- :||:||| |::||| |||||| GGUGUCCUG--AGUAUUAGCACUGU Cops5; Csn5; Jab1; Kic2 mmu-miR-130b 107 130 -UACGGGAAA-GUAGUAACGUGAC- :||:||| :||:| |||||| GGUGUCCUGAGUAUUA--GCACUGU Cops5; Csn5; Jab1; Kic2 mmu-miR-134 281 303 GGGGAGACCAGU---UGGUCAGUGU || |||||| ||: |||| ACCA--UGGUCACAAACUUGUCAG- Cops5; Csn5; Jab1; Kic2 mmu-miR-140* 156 191 -AGGCACCAAG-----------AUGGGACACCAU- ||:||||||: | |:| ||||: UUCUGUGGUUUUGUAGUUGGGGUUGCUUUUGGUGC Cops5; Csn5; Jab1; Kic2 mmu-miR-148b 93 118 UGUUUCA--AGACACUACGUGACU- :||:|| | ||||:||: |||| CUAAGGUGCUGUGUGGUGUCCUGAG Cops5; Csn5; Jab1; Kic2 mmu-miR-150 183 208 GUGACCAUGUUCCCA---ACCCUCU- :||||:| || ||||||: -UUUGGUGCUCUUGUUUAUGGGAGGA Cops5; Csn5; Jab1; Kic2 mmu-miR-151 305 333 GGAGUUCCUCGGA--------GUCAGAUC :|| | |||| ||||||| UUUCUU-GUGCCUUCUCUUGACAGUCUAU Cops5; Csn5; Jab1; Kic2 mmu-miR-152 92 118 GGGUUCAA-GACAG--UACGUGACU- |:||| |||| :||: |||| ACUAAGGUGCUGUGUGGUGUCCUGAG Cops5; Csn5; Jab1; Kic2 mmu-miR-155 242 275 GGGGAUAGUGUUA-------------AUCGUAAUU ||||||| |:| ||||||| -GCCUAUCAAAGUAAUCAAAGGAUCUUAGCAUUU- Cops5; Csn5; Jab1; Kic2 mmu-miR-20a 91 129 GAUGG----ACGUGAUAU--------------UCGUGAAAU ||: ||| |:|: |||||| -GACUAAGGUGCUGUGUGGUGUCCUGAGUAUUAGCACUG-- Cops5; Csn5; Jab1; Kic2 mmu-miR-20b 91 129 AUGG----ACGUGAUAC--------------UCGUGAAAC ||: ||| |:|| |||||| GACUAAGGUGCUGUGUGGUGUCCUGAGUAUUAGCACUG-- Cops5; Csn5; Jab1; Kic2 mmu-miR-214 296 321 GACGGACAG-----ACACGGACGACA ||:| ||: ||||||| || UUGUCAGUUUUUCUUGUGCCUUCUC- Cops5; Csn5; Jab1; Kic2 mmu-miR-24 100 120 -GACAAGGACGACUUGACUCGGU |||| || || |||||: GCUGUG--UGGUGUCCUGAGUA- Cops5; Csn5; Jab1; Kic2 mmu-miR-25 79 109 -AGUCUGGC--UCUG--UUCACGU--UAC- |||||:: |||| |:|||| :|| CUCAGAUUAGAAGACUAAGGUGCUGUGUGG Cops5; Csn5; Jab1; Kic2 mmu-miR-295 106 129 -UCUGAGUUUUCAUCAUCGUGAAA :| || :|||| ||||||| UGGUGUCCUGAGUAUUAGCACUG- Cops5; Csn5; Jab1; Kic2 mmu-miR-29b 157 193 UUGUGACUAAAGUUU--------------ACCACGAU | ||:|||: | ||||||| -UCUGUGGUUUUGUAGUUGGGGUUGCUUUUGGUGCUC Cops5; Csn5; Jab1; Kic2 mmu-miR-301b 98 130 -ACGAAACUGUUAUGG-----UAA-CGUGAC- |||| || : || ||| |||||| GUGCUGUGUGGUGUCCUGAGUAUUAGCACUGU Cops5; Csn5; Jab1; Kic2 mmu-miR-31 296 318 GUCGAUACGGUCGU--AGA--ACGGA- ||:|||: ||| ||||| -----UUGUCAGUUUUUCUUGUGCCUU Cops5; Csn5; Jab1; Kic2 mmu-miR-322 176 200 ACAACG----UCGCGAAGUACAAA- ||||| :|:||| | ||||| GGUUGCUUUUGGUGCU-CUUGUUUA Cops5; Csn5; Jab1; Kic2 mmu-miR-329 21 35 UUUUUCCAAUCGACC-CACACAA |||||| ||||| --------AAGCUGGUGUGUGG- Cops5; Csn5; Jab1; Kic2 mmu-miR-335 162 189 UGUAAAA----AGCAAUAACGAGAACU- :|||| |:| :|||||:|||: -GGUUUUGUAGUUGGGGUUGCUUUUGGU Cops5; Csn5; Jab1; Kic2 mmu-miR-342 90 110 -CUGC--CCACGCUAAAGACACACUCU ||| ||||| ||||||: AGACUAAGGUGC------UGUGUGGU- Cops5; Csn5; Jab1; Kic2 mmu-miR-376b 143 166 UUUCACCU--ACAAGGAGAUACUA- ||| ||| |:|||:||:| --CGUGAAAUUGUCCUUCUGUGGUU Cops5; Csn5; Jab1; Kic2 mmu-miR-376c 142 164 -GCACUUUAA-AGG-AGAUACAA ||||||||| ||| |||:|| ACGUGAAAUUGUCCUUCUGUGG- Cops5; Csn5; Jab1; Kic2 mmu-miR-381 173 198 UGUCUCU-CGA-----ACGGGAACAUAU :|:| ||| |||:||||| -UGGGGUUGCUUUUGGUGCUCUUGUU-- Cops5; Csn5; Jab1; Kic2 mmu-miR-382 274 299 GCUUAG-GUGGUGCU--UG-UUGAAG |||| |||||:|: || ||||| -UAAUCACACCAUGGUCACAAACUUG Cops5; Csn5; Jab1; Kic2 mmu-miR-489 96 114 -CGACGGUAUAUACACCACAGUAA | |||: :||||||||| AGGUGCU----GUGUGGUGUCC-- Cops5; Csn5; Jab1; Kic2 mmu-miR-497 89 106 AUGUUUGGUGUCACACGACGAC |:||:| ||||||: --AAGACUAAG--GUGCUGUG- Cops5; Csn5; Jab1; Kic2 mmu-miR-669b 122 140 UGUACGUGUACGUGUGUUUUGA- |||| ||:| |:|||||| ---AGCAC-UGUA-AUAAAACUA Cops5; Csn5; Jab1; Kic2 mmu-miR-673 78 109 -GAGG-----UUCCUGG--UCUCGACACUC- ||| :| |||: :| |||||| | ACUCAGAUUAGAAGACUAAGGUGCUGUGUGG Cops5; Csn5; Jab1; Kic2 mmu-miR-693-3p 1 28 AAUGUCGGUGU----AGACUUUCGACG ||| ||| ||| ||||||| UUACCACCAAGUACUUCUCAAAGCUGG Cops5; Csn5; Jab1; Kic2 mmu-miR-700 90 109 CCACCUGAG-CCAAGGGCGCAC- |||| ||| |:|:||| ---AGACUAAGGUG-CUGUGUGG Cops5; Csn5; Jab1; Kic2 mmu-miR-706 163 186 AAAAAAC-UCUGUCCCAAAGAGA- ||||| || :||||| ||:| -GUUUUGUAGUUGGGGUUGCUUUU Cops5; Csn5; Jab1; Kic2 mmu-miR-712* 184 218 -GUUGUGGG--------CCC-CCA----CUGAGCGU : ::|:| ||| || ||||| UUGGUGCUCUUGUUUAUGGGAGGAAAAAGACUCA-- Cops5; Csn5; Jab1; Kic2 mmu-miR-713 170 192 -CGACA-C-ACGGAAGUCACGU |:|| | |||:||::|||| AGUUGGGGUUGCUUUUGGUGCU Cops5; Csn5; Jab1; Kic2 mmu-miR-721 108 130 AAGGGGGAAAAUUAA-CGUGAC- : :||| ||| |||||| -GUGUCCUGAGUAUUAGCACUGU Cops5; Csn5; Jab1; Kic2 mmu-miR-758 280 296 AUCACCUGGU-CCAGUGUUU- |||| ||||||||| -----CACCAUGGUCACAAAC Cops5; Csn5; Jab1; Kic2 mmu-miR-761 296 316 ACACAGUCAAAGUGGGACGACG- |||||||||: :|:|| ||| -UUGUCAGUUUU-UCUUG-UGCC Cops5; Csn5; Jab1; Kic2 mmu-miR-763 3 29 CGGUGAC-CAAGAAGGG--UCGACC- |||| || ||||:| |||||| ACCACCAAGUACUUCUCAAAGCUGGU Cops5; Csn5; Jab1; Kic2 mmu-miR-764-3p 95 116 UGUCAACGGUGAUACCGGAGGA- || || | |:|||: |||| -AAGGUG-CUGUGUGGUGUCCUG Cops5; Csn5; Jab1; Kic2 mmu-miR-804 195 220 -AGGU-CCACUCCUUG--UUGAGUGU |::| || |||||| :|||||| GUUUAUGG-GAGGAAAAAGACUCACU Cops5; Csn5; Jab1; Kic2 mmu-miR-140* 158 165 -----------------AG-GCACCA----AGAUGGGACACCAU || |||| || ::||||||| GCACUGUAAUAAAACUAUCACGUGAAAUUGUCC-UUCUGUGGUU Cops5; Csn5; Jab1; Kic2 mmu-miR-151 325 332 ---------------GGAGUUCCUCGGA--------GUCAGAUC ::|| | |||| ||||||| ACAAACUUGUCAGUUUUUCUUGU-GCCUUCUCUUGACAGUCUAU Cops5; Csn5; Jab1; Kic2 mmu-miR-29b 185 192 UUGUGA--------------------CUAAAGUUUACCACGAU |:|| ||||||| UUGUCCUUCUGUGGUUUUGUAGUUGGGGUUGCUUUUGGUGCUC Cops5; Csn5; Jab1; Kic2 mmu-miR-335 189 196 UGUAA-----------------------AAAGCAAUAACGAGAACU |||:| |||||||| CCUUCUGUGGUUUUGUAGUUGGGGUUGCUUUUGG---UGCUCUUGU Cops5; Csn5; Jab1; Kic2 mmu-miR-758 287 294 AUCACC-----------------------UGGU-CCAGUGUUU |||| ||||||||| GUAAUCAAAGGAUCUUAGCAUUUAAUCACACCAUGGUCACAAAC Cops5; Csn5; Jab1; Kic2 mmu-let-7e 228 247 ugAUAUGUUGGAGGAUGGAgu |:| ||| ||||:||| tgTGTTCAA-ATCCTGCCTat Cops5; Csn5; Jab1; Kic2 mmu-miR-101a 78 105 gaAGUC-AAUAGUGU-----CAUGACAu |||| ||| | | ||:|||| acTCAGATTAGAAGACTAAGGTGCTGTg Cops5; Csn5; Jab1; Kic2 mmu-miR-101b 78 105 gaAGUCGA------UAGUGUCAUGACAu |||| | | :| :||:|||| acTCAGATTAGAAGACTAAGGTGCTGTg Cops5; Csn5; Jab1; Kic2 mmu-miR-106a 110 130 auGGACGUGACAAUCGUGAAAc |||| | | |||||||| | gtCCTG-AGTATTAGCACTGTa Cops5; Csn5; Jab1; Kic2 mmu-miR-130a 108 128 uACGGGAAAAUUGUAA-CGUGAC ||:|| | |::||| |||||| gTGTCC--TGAGTATTAGCACTG Cops5; Csn5; Jab1; Kic2 mmu-miR-130b 108 128 uACGGGAAAGUAGUAA-CGUGAC ||:|| | | :||| |||||| gTGTCC--TGAGTATTAGCACTG Cops5; Csn5; Jab1; Kic2 mmu-miR-134 268 292 ggGGAGACCAGU-UGGU--CAGUGU | |:| ||| |||| |||||| agCATTTAATCACACCATGGTCACA Cops5; Csn5; Jab1; Kic2 mmu-miR-140* 140 165 AG-GCAC--CAAGAUG-GGACACCAu || |||| || | | :||||||| TCACGTGAAATTGTCCTTCTGTGGTt Cops5; Csn5; Jab1; Kic2 mmu-miR-148b 92 116 UG-UUUCAAG--ACACUACGUGACU || ||:|| | ||||:||: |||| ACTAAGGTGCTGTGTGGTGTCCTGA Cops5; Csn5; Jab1; Kic2 mmu-miR-150 185 206 gugaccauguucccaACCCUCu |||||| tggtgctcttgtttaTGGGAGg Cops5; Csn5; Jab1; Kic2 mmu-miR-152 112 129 GGGUUCAAGACAGUACGUGACu ||::||| :| |||||| CCTGAGTATTA----GCACTGt Cops5; Csn5; Jab1; Kic2 mmu-miR-155 239 275 GG--GGAUAGU-------GUU------AAUCGUAAuu || ||||||| ||| |||||||| CCTGCCTATCAAAGTAATCAAAGGATCTTAGCATTta Cops5; Csn5; Jab1; Kic2 mmu-miR-20a 109 130 gauGGACGUGAUAUUCGUGAAAU |||| | ||| |||||| || tgtCCTG-AGTATTAGCACTGTA Cops5; Csn5; Jab1; Kic2 mmu-miR-20b 110 130 auGGACGUGAUACUCGUGAAAc |||| | ||| |||||| | gtCCTG-AGTATTAGCACTGTa Cops5; Csn5; Jab1; Kic2 mmu-miR-214 300 321 GACGGACAG-ACACGGACGAca | |::| || ||||||| || CAGTTTTTCTTGTGCCTTCTct Cops5; Csn5; Jab1; Kic2 mmu-miR-24 101 120 GACAAGGACGACUUGACUCggu |||| || || ||||| CTGT--GTGGTGTCCTGAGtat Cops5; Csn5; Jab1; Kic2 mmu-miR-25 80 105 AGUCUGG-C-UCUG--UUCACGUUAC |||||:: | |||| |:|||| :|| TCAGATTAGAAGACTAAGGTGCTGTG Cops5; Csn5; Jab1; Kic2 mmu-miR-295 107 129 ucugAGUUUUCAUCAUCGUGAaa || :|||| ||||||| ggtgTCCTGAGTATTAGCACTgt Cops5; Csn5; Jab1; Kic2 mmu-miR-29b 170 192 uugugaCUAAAGUUUACCACGAu |:|| | ||||||| agttggGGTTGCTTTTGGTGCTc Cops5; Csn5; Jab1; Kic2 mmu-miR-301b 99 128 ACGAAACUGUUAU-GG-----UAA-CGUGAC |||| || :::|: || ||| |||||| TGCTGTG-TGGTGTCCTGAGTATTAGCACTG Cops5; Csn5; Jab1; Kic2 mmu-miR-31 306 326 gucgAUACGGUCGUAGAACGGa |:|||| | ||||| | ttctTGTGCCTTC-TCTTGACa Cops5; Csn5; Jab1; Kic2 mmu-miR-329 13 33 uuuuuccaaUCGACCCACACAa |||| ||||||| acttctcaaAGCT-GGTGTGTg Cops5; Csn5; Jab1; Kic2 mmu-miR-335 174 196 uguaaaaagcAAUAACGAGAACu ||: |||||||| ggggttgcttTTGGTGCTCTTGt Cops5; Csn5; Jab1; Kic2 mmu-miR-342 91 110 CUG--CCCACGCUAAAGACACACucu ||| |||| ||||||| GACTAAGGTG------CTGTGTGgtg Cops5; Csn5; Jab1; Kic2 mmu-miR-376b 141 164 uUUCACCU--ACAAGGAGAUACUA | ||| | ||| |:|||:||:| cACGTGAAATTGTCCTTCTGTGGT Cops5; Csn5; Jab1; Kic2 mmu-miR-376c 143 164 GCACUUUAA-AGG-AGAUACaa ||||||||| ||| |||:|| CGTGAAATTGTCCTTCTGTGgt Cops5; Csn5; Jab1; Kic2 mmu-miR-381 171 199 uguCUCU--CGA-----ACGGGAACAUAU |:|: ||| |||:||||| || gttGGGGTTGCTTTTGGTGCTCTTGTTTA Cops5; Csn5; Jab1; Kic2 mmu-miR-382 273 298 gcUUAG-GUGGUGCU--UG-UUGAAg |||| |||||:|: || ||||| ttAATCACACCATGGTCACAAACTTg Cops5; Csn5; Jab1; Kic2 mmu-miR-489 97 115 CGACGGUAUAUACACCACAGUAa | ||| |:||||||||| | GGTGC----TGTGTGGTGTCCTg Cops5; Csn5; Jab1; Kic2 mmu-miR-497 86 106 AUGUU-UGGUGUCACACGACgac || || ||:| || |||||| TAGAAGACTA-AG-GTGCTGtgt Cops5; Csn5; Jab1; Kic2 mmu-miR-669b 119 138 uguaCGUGUACGUGUGUUUUGA |||| ||:| |:|||||| attaGCAC-TGTA-ATAAAACT Cops5; Csn5; Jab1; Kic2 mmu-miR-673 84 107 gAGGUUCCUGGU--CUCGACACuc |: :| |||:| | |||||| aTTAGAAGACTAAGGTGCTGTGtg Cops5; Csn5; Jab1; Kic2 mmu-miR-700 97 119 CCACCUGA---GCCA-AGGGCGCAc |||| || :||| |||:| || GGTG--CTGTGTGGTGTCCTGAGTa Cops5; Csn5; Jab1; Kic2 mmu-miR-706 162 184 aaAAAAC-UCUGUCCCAAAGAGA ||||| || ::||||| ||:| ggTTTTGTAGTTGGGGTTGCTTT Cops5; Csn5; Jab1; Kic2 mmu-miR-712* 193 219 guugugggCCC-CC----ACUGAGCGu ||| || ||||| | ttgtttatGGGAGGAAAAAGACTCACt Cops5; Csn5; Jab1; Kic2 mmu-miR-713 171 191 CGACAC--ACGGAAGUCACGu |:|| | |||:||::|||| GTTGGGGTTGCTTTTGGTGCt Cops5; Csn5; Jab1; Kic2 mmu-miR-758 275 294 aucaccUGGU-CCAGUGUUU |||| ||||||||| aatcacACCATGGTCACAAA Cops5; Csn5; Jab1; Kic2 mmu-miR-761 295 321 acACAGUCAAAGUG-----GGACGAcg |||||||||: | ||| || ctTGTCAGTTTTTCTTGTGCCTTCTct Cops5; Csn5; Jab1; Kic2 mmu-miR-764-3p 94 114 ugUCAACGGUGAUACCGGAGGA || |||:: |:|||: |||| taAGGTGCTG-TGTGGTGTCCT Cops5; Csn5; Jab1; Kic2 mmu-miR-804 196 219 AGGUCCACUCC--UUGUUGAGUGu |::| | |||| || :|||||| TTTATGGGAGGAAAAAGACTCACt

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cops5 RAID00145001 mmu-miR-212-3p miRNA MIMAT0000659 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID00206377 mmu-miR-10b-5p miRNA MIMAT0000208 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID00289459 mmu-miR-10a-5p miRNA MIMAT0000648 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID00335298 mmu-let-7e-5p miRNA MIMAT0000524 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID00471204 mmu-miR-320-3p miRNA MIMAT0000666 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID00501357 mmu-miR-130a-3p miRNA MIMAT0000141 Cops5 mRNA 26754 CLIP-seq//Prediction 0.6308 Cops5 RAID00562441 mmu-miR-708-5p miRNA MIMAT0004828 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID00817454 mmu-miR-377-3p miRNA MIMAT0000741 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID00851866 mmu-let-7b-5p miRNA MIMAT0000522 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID00940817 mmu-miR-132-3p miRNA MIMAT0000144 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01049741 mmu-miR-1936 miRNA MIMAT0009400 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01109321 mmu-miR-181a-5p miRNA MIMAT0000210 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01125309 mmu-miR-128-3p miRNA MIMAT0000140 Cops5 mRNA 26754 CLIP-seq//Prediction 0.6308 Cops5 RAID01128440 mmu-miR-98-5p miRNA MIMAT0000545 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01256068 mmu-miR-497b miRNA MIMAT0031404 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01286694 mmu-miR-758-3p miRNA MIMAT0003889 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01333794 mmu-miR-3547-3p miRNA MIMAT0027833 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01361902 mmu-miR-181c-5p miRNA MIMAT0000674 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01508894 mmu-miR-126b-5p miRNA MIMAT0029894 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01715630 mmu-miR-27a-3p miRNA MIMAT0000537 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01720254 mmu-let-7g-5p miRNA MIMAT0000121 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01783618 mmu-miR-27b-3p miRNA MIMAT0000126 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01785332 mmu-miR-326-3p miRNA MIMAT0000559 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01850720 mmu-miR-299a-3p miRNA MIMAT0004577 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01879726 mmu-miR-330-5p miRNA MIMAT0004642 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID01947244 mmu-miR-496a-3p miRNA MIMAT0003738 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02057583 mmu-miR-339-5p miRNA MIMAT0000584 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02103014 mmu-let-7f-5p miRNA MIMAT0000525 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02208660 mmu-miR-153-5p miRNA MIMAT0016992 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02280609 mmu-miR-362-3p miRNA MIMAT0004684 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02295346 mmu-miR-448-3p miRNA MIMAT0001533 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02296903 mmu-miR-28a-5p miRNA MIMAT0000653 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02302519 mmu-miR-125a-3p miRNA MIMAT0004528 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02438164 mmu-miR-378a-3p miRNA MIMAT0003151 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02475520 mmu-miR-185-5p miRNA MIMAT0000214 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02600243 mmu-let-7c-5p miRNA MIMAT0000523 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02652197 mmu-miR-504-5p miRNA MIMAT0004889 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02667263 mmu-miR-224-5p miRNA MIMAT0000671 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02765533 mmu-miR-421-3p miRNA MIMAT0004869 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02765692 mmu-miR-181d-5p miRNA MIMAT0004324 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02838971 mmu-miR-335-5p miRNA MIMAT0000766 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02889770 mmu-miR-495-3p miRNA MIMAT0003456 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02959874 mmu-miR-203-3p miRNA MIMAT0000236 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID02974821 mmu-miR-1188-5p miRNA MIMAT0005843 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID03123622 mmu-let-7a-5p miRNA MIMAT0000521 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID03157714 mmu-miR-329-3p miRNA MIMAT0000567 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID03374592 mmu-miR-140-3p miRNA MIMAT0000152 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID03537815 mmu-let-7i-5p miRNA MIMAT0000122 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID03562456 mmu-miR-374b-5p miRNA MIMAT0003727 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID03616878 mmu-let-7d-5p miRNA MIMAT0000383 Cops5 mRNA 26754 Prediction 0.1828 Cops5 RAID03678269 mmu-miR-181b-5p miRNA MIMAT0000673 Cops5 mRNA 26754 Prediction 0.1828