DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004781 mmu-miR-532-3p 57751 Rnf25 acgUUCGGAACCCACACCCUCc ::| ||||| ||||||| acaGGGAAUUGGG-GUGGGAGg 2 20 16 36 [mm9:1:74640362-74640382:-] 0.6730 157 7 -32.73 -0.5721 MIMAT0003471 mmu-miR-692 57751 Rnf25 cuCACUCCGCGAGUUUCUCUa | ||||| | ||||||| gaGGGAGGCAAU-AAAGAGAa 2 20 33 52 [mm9:1:74640346-74640365:-] 0.6730 157 7 -20.66 -0.9594 MIMAT0000133 mmu-miR-101a 57751 Rnf25 aagucaauaguGUCAUGACAu ||||||||| -----------CAGUACUGUu 2 11 1 10 [mm9:1:74640388-74640397:-] 0.6730 150 7 -13.05 -0.3663 MIMAT0000584 mmu-miR-339-5p 57751 Rnf25 gcacucGAGGACCUCCUGUCCCu || :|||:|||||||| -caguaCUGUUGGGGGACAGGGa 2 18 1 22 [mm9:1:74640376-74640397:-] 0.6730 169 7 -34.12 -0.9943 MIMAT0000616 mmu-miR-101b 57751 Rnf25 aagucgauaguGUCAUGACAu ||||||||| -----------CAGUACUGUu 2 11 1 10 [mm9:1:74640388-74640397:-] 0.6730 150 7 -13.05 -0.3663

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G045949 Rnf25 Mus musculus 57751

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf25 mmu-miR-692 beg:34 end:52 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& ||||| .||||||| &5' ----GAGGCAA-TAAAGAGA- 3' Rnf25 mmu-miR-101a beg:0 end:10 pic:3' AAGTCAATAGTGTCATGACAT 5'& ||||||||| &5' -----------CAGTACTGT- 3' Rnf25 mmu-miR-101b beg:0 end:10 pic:3' AAGTCGATAGTGTCATGACAT 5'& ||||||||| &5' -----------CAGTACTGT- 3' Rnf25 mmu-miR-1982.1 beg:16 end:35 pic:3' GACACCCTCTTGTATCCCACTCT 5'& |||| |.|||||.|| &5' ----GGGAAT---TGGGGTGGGA 3' Rnf25 mmu-miR-1982.2 beg:16 end:33 pic:3' GACACCCTCTTGTATCCCACT 5'& |||| |.|||||. &5' ----GGGAAT---TGGGGTGG 3' Rnf25 mmu-miR-339-5p beg:0 end:23 pic:3' GCACTCGAGGACCTCCTGTCCCT 5'& | || .|||.||||||||| &5' ---GTACTGTTGGGGGACAGGGA 3' Rnf25 mmu-miR-343 beg:24 end:41 pic:3' AGACCCGTGTACTTCCCTCT 5'& |||. |.||||||. &5' ---GGGTG---GGAGGGAGG 3' Rnf25 mmu-miR-421 beg:0 end:12 pic:3' CGCGGGTTAATTACA-GACAACTA 5'& || ||||||. &5' -------------GTACTGTTGG- 3' Rnf25 mmu-miR-532-3p beg:14 end:37 pic:3' AC-GTTCGG-AACCCACACCCTCC 5'& | ||.| ||||| |||||||| &5' -GACAGGGAATTGGG-GTGGGAGG 3' Rnf25 mmu-miR-540-5p beg:44 end:63 pic:3' TGTCTCAGTCTCCC-ACTGGGAAC 5'& |||| |||||.||| &5' --------AGAGAATTGACCTTTG 3' Rnf25 mmu-miR-670 beg:1 end:23 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& .|| . |||||| &5' --TACTGTTGGGGGACAGGGA- 3' Rnf25 mmu-miR-744star beg:24 end:46 pic:3' TCCAA-CTCCAATCACCGTTGTC 5'& .||| |||| |||||.| &5' GGGTGGGAGGGA---GGCAATA- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Rnf25 mmu-miR-10a 3 23 -GUGUUUAAGCCUAGAUGUCCCAU :|| |:||: |||||| GUACUG--UUGGGGG-ACAGGGA- Rnf25 mmu-miR-133a 15 43 -UGUC----GACCAA--CUUCCC-CUGGUU |||| :||| |:|||| |:| GACAGGGAAUUGGGGUGGGAGGGAGGCA-- Rnf25 mmu-miR-150 8 38 GUGACCA--UGU-------UCCCAACCCUCU- :||| ||| :||| ||||||: -GUUGGGGGACAGGGAAUUGGGG-UGGGAGGG Rnf25 mmu-miR-204 16 41 -GUCCGU--AUCCUACUGUUUCCCUU- |||| | |:||:||: :|||||: ACAGGGAAUUGGGGUGG--GAGGGAGG Rnf25 mmu-miR-205 13 40 GUCUGAGGCC----ACCUUACU--UCCU- :||| || ||| ||: :||| GGGACA--GGGAAUUGGGGUGGGAGGGAG Rnf25 mmu-miR-207 10 43 -CUCCCU---CCU----CUCGGUC-CUCUUCG- |:|||| ||| |:|: :| |:||:|| UGGGGGACAGGGAAUUGGGGUGGGAGGGAGGCA Rnf25 mmu-miR-211 17 41 -UCCGUU--UCCUACUGUUUCCCUU- ||| || :||:||: :|||||: CAGGGAAUUGGGGUGG--GAGGGAGG Rnf25 mmu-miR-296 15 43 -UGUCCU--AACUCC-----CCC-CCGGGA |||||: |||:|| ||| ||| GACAGGGAAUUGGGGUGGGAGGGAGGCA-- Rnf25 mmu-miR-298 30 66 -CCUUCUUGUCGGGA------------GGAGACGG- ||:||:: :|| |||:|||: UGGGAGGGAGGCAAUAAAGAGAAUUGACCUUUGCUU Rnf25 mmu-miR-300 31 65 -CUUCUCUC-G-----------AAC-GGGAACGUAU |:||:||| | ||| ||:|||| GGGAGGGAGGCAAUAAAGAGAAUUGACCUUUGCU-- Rnf25 mmu-miR-328 19 44 UGCCUU--CCCGUCUCUCCCG--GUC |||| ||| |:||||| || -GGGAAUUGGGGUGGGAGGGAGGCAA Rnf25 mmu-miR-339 5 24 ACUCGAGGACCUCCUGUCCCU- || :|||:||||||||| ---ACUGUUGGGGGACAGGGAA Rnf25 mmu-miR-342 9 36 CUGCCCA----CGCUAAAGACA-CACUCU- :||| | || :|| |||:|| -UUGGGGGACAGGGAA--UUGGGGUGGGAG Rnf25 mmu-miR-345 2 23 -CGUGACCUGAUCCCCAGUCGU- |:|||| :|:|||| ||| : AGUACUG--UUGGGGGACAGGGA Rnf25 mmu-miR-346 10 36 -UCUCC-GUCCGUGAGCCCGUCUGU- :|:|| |||| | |:||| |: | UGGGGGACAGGGAAUUGGGGUGGGAG Rnf25 mmu-miR-378 15 37 UGUGUCCUGG-ACCUCAGUCCUC- |||||: |||:|| :|||| -GACAGGGAAUUGGGGU-GGGAGG Rnf25 mmu-miR-463 9 30 -ACUACCUGUUGUUUAAUCCAU || |||||: :||||:|| UUGGGGGACAGGGAAUUGGGG- Rnf25 mmu-miR-469 13 44 -CCUGU-----GGUUCUAGUUACUUUCUCCGU- ||||| :: |:| ||::|||||| GGGACAGGGAAUUGGGGUGG--GAGGGAGGCAA Rnf25 mmu-miR-483 12 40 UGUUCUG-CCCU---CCCC-UCCUCACU- ::||| |||| |||| :|||| || -GGGGACAGGGAAUUGGGGUGGGAGGGAG Rnf25 mmu-miR-486 9 36 GAGCCCC-GUCG---AGUCAUGUCCU- | |||| ||| |::| ::||| UUGGGGGACAGGGAAUUGGGGUGGGAG Rnf25 mmu-miR-686 27 46 AGAAGUGGCAGACCCUUCGUUA- : :| ||||:||||| ----GGGUGGGAGGGAGGCAAUA Rnf25 mmu-miR-689 5 34 CCUGGGGCGGCUC-----------GCCCCUGC- |:| |:| :|||| | ----ACUGUUGGGGGACAGGGAAUUGGGGUGGG Rnf25 mmu-miR-692 32 53 -CUCACUCCGCGAGUUUCUCUA ||| ||||| :||||||| GGAGGGAGGCAA-UAAAGAGAA Rnf25 mmu-miR-698 30 55 UCCCUUCCUUUG------CUCUUAC ||||:|||::| |||||| UGGGAGGGAGGCAAUAAAGAGAAUU Rnf25 mmu-miR-702 18 44 -CUCG---CCCCA-UUUCCCACCCGU- |:| ||||| ::|||| |||| AGGGAAUUGGGGUGGGAGGGA-GGCAA Rnf25 mmu-miR-718 14 41 GCUGU-----GGGCCGGCCCGCCUUC- |||| :: || :||| ||:|| GGACAGGGAAUUGGGGUGGGAGGGAGG Rnf25 mmu-miR-692 45 52 -----------------------CUCACUCCGCGAGUUUCUCUA ||| ||||| :||||||| UGGGGGACAGGGAAUUGGGGUGGGAGGGAGGCAA-UAAAGAGAA Rnf25 mmu-miR-10a 3 23 guguuuAAGCCUAGAUGUCCCau || ||: |||||| gtactgTTGGGG--GACAGGGaa Rnf25 mmu-miR-133a 1 20 uGUC--GACCAACUUCCCCUGguu ||| || |||| |||||| -CAGTACT-GTTG--GGGGACagg Rnf25 mmu-miR-150 15 36 gUGACCAUGUUCCCAACCCUCu || || | ||| |||||| gACAGGGAATTGGGGTGGGAGg Rnf25 mmu-miR-204 17 39 GUCCGU--AUCCUACUGUUUCCCUu |||| | |:||:|| ::||||| CAGGGAATTGGGGTG--GGAGGGAg Rnf25 mmu-miR-205 17 41 GUC---UGAGGCCACCUUACUUCCu ||| |:| |||||:| |:||| CAGGGAATTGGGGTGGGAGGGAGGc Rnf25 mmu-miR-207 11 40 CUCCCU---CCU---CUCGGUCCU-CUUCg |:|||| ||| |:| ::||| |:|| GGGGGACAGGGAATTGGGGTGGGAGGGAGg Rnf25 mmu-miR-211 18 39 UCCGUU--UCCUACUGUUUCCCUu ||| || :||:|| ::||||| AGGGAATTGGGGTG--GGAGGGAg Rnf25 mmu-miR-296 16 44 UGUCC--UAACUCC-----CCC-CCGgga ||||| ||||:|| ||| ||| ACAGGGAATTGGGGTGGGAGGGAGGCaat Rnf25 mmu-miR-296 1 19 uGUCCUAACUCCCCCCCGGga ||| | || ||||| | -CAGTACTG-TTGGGGGACag Rnf25 mmu-miR-298 36 64 CCUUC-----UUGUCGGGA--GGAGACGg |||:| || || :| |||:||| GGAGGCAATAAAGAGAATTGACCTTTGCt Rnf25 mmu-miR-300 45 66 cUUCUCUCGAACGGGAACGUAU |||||| :| ||:|||| || aAAGAGAATTGACCTTTGCTTA Rnf25 mmu-miR-328 18 41 UGCCUU--CCCGUCUCUCCCgguc | |||| ||| |:||||| AGGGAATTGGGGTGGGAGGGaggc Rnf25 mmu-miR-339 2 22 acucGAGGACCUCCUGUCCCU || :|||:||||||||| agtaCTGTTGGGGGACAGGGA Rnf25 mmu-miR-342 15 36 CUGCCCACGCUAAAGACACACUCu ||| || | ||| ||| ||| GACAGG-G-AATTGGGGTGGGAGg Rnf25 mmu-miR-345 3 21 CGUGACCUGAUCCCCAGUCgu |:|||| :|:|||| ||| GTACTG--TTGGGGGACAGgg Rnf25 mmu-miR-346 11 42 uCUCC-GUCCGUGAGC--------CCGUCUGU |:|| |||| | |:| || ||:|| gGGGGACAGGGAATTGGGGTGGGAGGGAGGCA Rnf25 mmu-miR-378 1 22 uguGUCCUG--GA-CCUCAGUCCuc ||| || :| ||:| |||| ---CAGTACTGTTGGGGGACAGGga Rnf25 mmu-miR-463 10 30 ACUACCUGUUGUUUAAUCCau ||: |||||: :||||:|| TGGGGGACAGGGAATTGGGgt Rnf25 mmu-miR-469 19 42 CCUGUGGUUCUAGUUACUUUCUCCGU ||: |::::|:| : ||::|||||| GGGAATTGGGGT--GGGAGGGAGGCA Rnf25 mmu-miR-483 11 38 uguuCUG-CCCU---CCCC-UCCUCACU ||| |||| |||| :|||| || ggggGACAGGGAATTGGGGTGGGAGGGA Rnf25 mmu-miR-486 1 21 gaGCCCCGUCGA-GUCAUGUCCu | | | |:| :| ||||| --CAGTACTGTTGGGGGACAGGg Rnf25 mmu-miR-686 23 44 agaaguggcagaCCCUUCGUUA ||||:||||| attggggtgggaGGGAGGCAAT Rnf25 mmu-miR-689 1 18 ccuggggcggcucgCCCCUGc |||||| ---cagtactgttgGGGGACa Rnf25 mmu-miR-692 33 52 CUCACUCCGCGAGUUUCUCUa ||| ||||| | ||||||| GAGGGAGGCAAT-AAAGAGAa Rnf25 mmu-miR-698 34 54 UCCCUUCCU--UUGCUCUUAc |||||:| | || |||||| AGGGAGGCAATAAAGAGAATt Rnf25 mmu-miR-702 13 35 CUC-GCCCCAU-UUCCCACCCgu |:| | ||| | :||||||| GGGACAGGGAATTGGGGTGGGag Rnf25 mmu-miR-718 12 35 gCUGUGGGCC---GGCCCGCCUUC |: || || : |||:||:|| gGGGACAGGGAATTGGGGTGGGAG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf25 RAID00363950 mmu-miR-101b-3p miRNA MIMAT0000616 Rnf25 mRNA 57751 Prediction 0.1828 Rnf25 RAID02152426 mmu-mir-325 miRNA MI0000597 Rnf25 mRNA 57751 Prediction 0.1828 Rnf25 RAID03483252 mmu-miR-101a-3p miRNA MIMAT0000133 Rnf25 mRNA 57751 Prediction 0.1828 Rnf25 RAID03769938 mmu-miR-339-5p miRNA MIMAT0000584 Rnf25 mRNA 57751 Prediction 0.2202