DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004636 mmu-miR-93* 68818 Zfand2b gcCCUUCACGAUCGAGU-CGUCa ||||| | | |||| |||| gaGGAAG-GACA-CUCAUGCAGc 2 21 141 161 [mm9:1:75167995-75168015:+] 0.5366 120 0 -18.81 -0.4850 MIMAT0000549 mmu-miR-322* 68818 Zfand2b cacaacgucgcGAAGUACAAa | ||||||| acagccuuuuuCAUCAUGUUa 2 11 249 269 [mm9:1:75168103-75168123:+] 0.5659 142 7 -12.83 -1.1089 MIMAT0004649 mmu-miR-339-3p 68818 Zfand2b gccgagACAGCGGCUCC-GCGAGu || ||: |||| ||||| caggagUGACGUGGAGGACGCUCc 2 18 105 128 [mm9:1:75167959-75167982:+] 0.5366 129 0 -24.20 -0.1272 MIMAT0003120 mmu-miR-483* 68818 Zfand2b uucugcccuccCCUCCUCACu | ||||||| agcagugccaaGCAGGAGUGa 2 11 93 113 [mm9:1:75167947-75167967:+] 0.5366 142 7 -13.50 -0.1599 MIMAT0003170 mmu-miR-541 68818 Zfand2b ucAC-ACUGGUUGUAGUCUUAGGGAa || | ||||: || ||||||| ggUGCUAACCAGACUC--AAUCCCUa 2 24 226 249 [mm9:1:75168080-75168103:+] 0.5366 155 7 -19.72 -0.6031 MIMAT0004823 mmu-miR-666-3p 68818 Zfand2b ucgUCC-GCUAGUGCG-ACGUCGg ||| |: ||| | |||||| gagAGGAAGGACACUCAUGCAGCu 2 20 139 162 [mm9:1:75167993-75168016:+] 0.5366 122 6 -20.16 -0.2493 MIMAT0003469 mmu-miR-690 68818 Zfand2b aaaccaacacucggaUCGGAAa |||||| agacucaaucccuacAGCCUUu 2 8 236 257 [mm9:1:75168090-75168111:+] 0.5512 120 6 -11.54 -0.1064 MIMAT0007872 mmu-miR-1906 68818 Zfand2b ucggGACGGAGUCCGACGACGu || ||| |||||||| uaagCUAGCUC-UGCUGCUGCa 2 19 162 182 [mm9:1:75168016-75168036:+] 0.5366 152 7 -23.78 -0.1983 MIMAT0007877 mmu-miR-1894-5p 68818 Zfand2b ucUCCGUCCACCAUCCCCUCUc :| | | | | ||||||| --GGCCCUGGGCUUGGGGAGAg 2 21 1 20 [mm9:1:75167855-75167874:+] 0.6619 148 7 -25.03 -0.1838 MIMAT0009391 mmu-miR-1928 68818 Zfand2b cuCGACCGU-UACAUCGa |||| || ||||||| ggGCUGCCACAUGUAGCa 2 16 284 301 [mm9:1:75168138-75168155:+] 0.5659 158 7 -18.44 -0.1292 MIMAT0009409 mmu-miR-1944 68818 Zfand2b uuagucuugaaCUGUAAGUCGUGUCUc || | |||||||| ggguccacaggGAAAGGAAGCACAGAg 2 17 56 82 [mm9:1:75167910-75167936:+] 0.5366 148 7 -24.22 -0.4474 MIMAT0009428 mmu-miR-1956 68818 Zfand2b aggcgacugagUCGGGACCUGa || ||||||| aagcacagagaAG-CCUGGACa 2 12 73 93 [mm9:1:75167927-75167947:+] 0.5366 141 7 -16.95 -0.3412 MIMAT0015641 mmu-miR-3470b 68818 Zfand2b ggUCGGACCAGAUGUC-UCACu ||||||| |||| |||| gaAGCCUGG---ACAGCAGUGc 2 20 82 100 [mm9:1:75167936-75167954:+] 0.5366 127 0 -22.68 -0.1241 MIMAT0015646 mmu-miR-3474 68818 Zfand2b cuuaGGUGCAGAGG----AGG-GUCCc :||| ||||| ||| |||| acccUCACAUCUCCAGGGUCCACAGGg 2 19 41 67 [mm9:1:75167895-75167921:+] 0.5366 121 0 -26.20 -0.2230 MIMAT0000541 mmu-miR-96 68818 Zfand2b ucguuuuuacaCGAUCACGGUUu || |||||||| aagccuggacaGC-AGUGCCAAg 2 13 83 104 [mm9:1:75167937-75167958:+] 0.5366 146 7 -19.14 -0.1348 MIMAT0000584 mmu-miR-339-5p 68818 Zfand2b gcaCUCGA-GG---ACCUC--CUGUCCCu |:||| || || || ||||||| cugGGGCUGCCACAUGUAGCAGACAGGGa 2 21 281 309 [mm9:1:75168135-75168163:+] 0.5659 149 7 -26.24 -0.3223 MIMAT0000669 mmu-miR-221 68818 Zfand2b cuuugggUCGUCUGU-UACAUCGa :|| | || ||||||| ucccuggGGCUGCCACAUGUAGCa 2 17 278 301 [mm9:1:75168132-75168155:+] 0.5659 151 7 -16.54 -0.1331 MIMAT0000670 mmu-miR-222 68818 Zfand2b ugggucauCGGUCUACAUCGa |||| ||||||| cuggggcuGCCACAUGUAGCa 2 14 281 301 [mm9:1:75168135-75168155:+] 0.5659 157 7 -18.38 -0.1331 MIMAT0004889 mmu-miR-504 68818 Zfand2b cuaucucacgucuGGUCCCAGa |||||||| gacccucacaucuCCAGGGUCc 2 10 40 61 [mm9:1:75167894-75167915:+] 0.5992 145 7 -18.08 -0.2278

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G057417 Zfand2b Mus musculus 68818

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Zfand2b mmu-miR-483star beg:103 end:114 pic:3' TTCTGCCCTCCCCTCCTCACT 5'& |||||||| &5' -------------AGGAGTGA 3' Zfand2b mmu-miR-504 beg:50 end:61 pic:3' CTATCTCACGTCTGGTCCCAGA 5'& |||||||| &5' -------------CCAGGGTC- 3' Zfand2b mmu-miR-1906 beg:161 end:183 pic:3' TCGGGACGGAGTCCGACGACGT 5'& |||. ||| ||||||||| &5' AGCTAG--CTCT-GCTGCTGCA 3' Zfand2b mmu-miR-1894-5p beg:4 end:21 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& .||| |||||||| &5' --GGGCTT------GGGGAGAG 3' Zfand2b mmu-miR-96 beg:91 end:105 pic:3' TCGTTTTTACACGATCACGGTTT 5'& || ||||||||. &5' -----------GC-AGTGCCAAG 3' Zfand2b mcmv-miR-m108-2-5p.1 beg:173 end:196 pic:3' GCCACGAGCGCAG---CTCACTGGCG 5'& | |||| || |.|||.||| &5' -GCTGCT-GCAGAAGAGGGTGGCCG- 3' Zfand2b mmu-miR-1188 beg:30 end:52 pic:3' AGGACCGGGTT---GGAGTGTGGT 5'& || |.. |||||||.| &5' ----GGACTGTGACCCTCACATC- 3' Zfand2b mmu-miR-1190 beg:299 end:324 pic:3' CTGTCTCCC-CTTGGAGTCGACT 5'& |||||.| | |..|| .| || &5' GACAGGGAGAGGGCCG-GGAAGA 3' Zfand2b mmu-miR-1196 beg:302 end:324 pic:3' TCCGTCTCC--GTCCATCTAAA 5'& ||| ||||| |.|| ||| &5' AGGGAGAGGGCCGGGAAGA--- 3' Zfand2b mmu-miR-130b beg:249 end:272 pic:3' TACGG-GAAAGTAGTAACGTGAC 5'& ||| .||||||||| .||| &5' --GCCTTTTTCATCATGTTACT- 3' Zfand2b mmu-miR-130bstar beg:3 end:23 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& |.| || ..||||.|||| &5' --TGG-GCT-TGGGGAGAGAG- 3' Zfand2b mmu-miR-130bstar beg:293 end:315 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& |||| .|||||||.||.| &5' -GTAGCA-GACAGGGAGAGGG- 3' Zfand2b mmu-miR-146bstar beg:275 end:288 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& |||||.|||| &5' ------------TCCCTGGGGC 3' Zfand2b mmu-miR-15b beg:159 end:181 pic:3' ACATTTGGTACTACACGACGAT 5'& |||.|.| |||||||. &5' --TAAGCTAGCTC-TGCTGCTG 3' Zfand2b mmu-miR-17star beg:166 end:184 pic:3' GATGTTCACGGGA-G-TGACGTCA 5'& ||.|| | .|||||| &5' --------GCTCTGCTGCTGCAG- 3' Zfand2b mmu-miR-1903 beg:128 end:149 pic:3' ACAGAGTCCTT---CTTCTTCTTCC 5'& |||. |.|||.||||| &5' -------GGAGCCCGGAGAGGAAGG 3' Zfand2b mmu-miR-1928 beg:281 end:301 pic:3' CTCGACCGT-TACATCGA 5'& |.|||| || ||||||| &5' GGGCTGCCACATGTAGC- 3' Zfand2b mmu-miR-193star beg:225 end:243 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& |||. ||||.|| &5' ------TGCTAACC-AGACTCA 3' Zfand2b mmu-miR-1944 beg:60 end:83 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& |||.. |. ||||||||| &5' ---CAGGGAAAGGA----AGCACAGAG 3' Zfand2b mmu-miR-1952 beg:102 end:122 pic:3' GTCTTC-CTCCCACCTCT 5'& |||.|| || ||||||. &5' CAGGAGTGAC-GTGGAGG 3' Zfand2b mmu-miR-1956 beg:0 end:12 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& .|||||||.|| &5' -----------GGCCCTGGGCT 3' Zfand2b mmu-miR-1962 beg:241 end:258 pic:3' TACACAGGGTCACGGTCGGAGA 5'& |||| ||||||.| &5' -----TCCCTA---CAGCCTTT 3' Zfand2b mmu-miR-207 beg:128 end:145 pic:3' CTCCCTCCTCTCGGTCCTCTTCG 5'& .||||| |||||.| &5' --------GGAGCCCGGAGAGG- 3' Zfand2b mmu-miR-207 beg:302 end:326 pic:3' CTCCCTCCTCTCGGTCCTCTTCG 5'& ||||| |||.|||.||| ||. &5' -AGGGA-GAGGGCCGGGAAGAGT 3' Zfand2b mmu-miR-20bstar beg:166 end:184 pic:3' GATCTTCACGAG-TG-TGACGTCA 5'& |||| .| .|||||| &5' --------GCTCTGCTGCTGCAG- 3' Zfand2b mmu-miR-21 beg:147 end:169 pic:3' AGTTGT-AGTCAGACTATTCGAT 5'& .||| ||| | | ||||||| &5' --GACACTCATGCAGCTAAGCTA 3' Zfand2b mmu-miR-2141 beg:271 end:292 pic:3' TTGAAAAG--ACTGTGGAGGA 5'& |||||| ||. .|. || &5' --CTTTTCCCTGGGGCTGCC- 3' Zfand2b mmu-miR-2146 beg:32 end:56 pic:3' GTGTACCTTGGGA----AGAGGTG 5'& || || ||||| |||||| &5' -AC-TGTGACCCTCACATCTCCA- 3' Zfand2b mmu-miR-218 beg:59 end:81 pic:3' TGTACCAATCTAGTTCGTGTT 5'& ||| || ||. |||||||. &5' ACAGGGAAAGG--AAGCACAG 3' Zfand2b mmu-miR-222 beg:278 end:301 pic:3' TGGGTCAT--CGGTCTACATCGA 5'& || | |||| ||||||| &5' -CCTGGGGCTGCCACATGTAGC- 3' Zfand2b mmu-miR-29a beg:213 end:233 pic:3' ATTGGCTAAAGTCTACCACGAT 5'& ..|| | | ||||||| &5' -GGCC----TTGGTAGGTGCTA 3' Zfand2b mmu-miR-29b beg:223 end:233 pic:3' TTGTGACTAAAGTTTACCACGAT 5'& ||||||| &5' ----------------GGTGCTA 3' Zfand2b mmu-miR-322 beg:160 end:181 pic:3' AGGTTTTGTACTTAACGACGAC 5'& |.||. .| |||||||| &5' -CTAAGCTAGCTC-TGCTGCTG 3' Zfand2b mmu-miR-328 beg:296 end:319 pic:3' TGCCT-TCCCGTCTCTCCCGGTC 5'& .| || |||| ||||||||.| &5' GCAGACAGGG---AGAGGGCCGG 3' Zfand2b mmu-miR-33 beg:91 end:115 pic:3' ACGTTACG--TTGATGTTACGTG 5'& |||.||| |.| . |.|| || &5' -GCAGTGCCAAGCAGGAGTG-AC 3' Zfand2b mmu-miR-339-5p beg:48 end:69 pic:3' GCACTCGAGGACCTCC-TGTCCCT 5'& |||| ||. ||||||| &5' ------CTCCAGGGTCCACAGGGA 3' Zfand2b mmu-miR-343 beg:292 end:312 pic:3' AGACCCGTGTACT-TCCCTCT 5'& || .|| || ||||||| &5' --TGTA-GCA-GACAGGGAGA 3' Zfand2b mmu-miR-343 beg:2 end:20 pic:3' AGACCCGTGTACTTCCCTCT 5'& |||||| .|||||| &5' -CTGGGCTT----GGGGAGA 3' Zfand2b mmu-miR-3475 beg:37 end:58 pic:3' AAGTTTGGTACAC-GGAGGTCT 5'& .||| .||||||. &5' ----GACCCTCACATCTCCAGG 3' Zfand2b mmu-miR-374star beg:144 end:163 pic:3' GAGCCTGTTACTATTATGTTGG 5'& ||||| ||.||.|. &5' ---GGACACTC---ATGCAGCT 3' Zfand2b mmu-miR-375 beg:301 end:329 pic:3' AGTGCG---CTCGGCTTG-CTTGTTT 5'& || | |.||||. ||..||| &5' -CAGGGAGAGGGCCGGGAAGAGTAAA 3' Zfand2b mmu-miR-432 beg:36 end:59 pic:3' GAC-GGGTGACTAGATGAGGTTCT 5'& || ||| |||||.|. &5' -TGACCCTCACAT---CTCCAGGG 3' Zfand2b mmu-miR-450b-5p beg:168 end:186 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& || .| |.|||||.|| &5' ---TCT---GC-TGCTGCAGAA 3' Zfand2b mmu-miR-469 beg:4 end:25 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& | .| | . ||.|||||| &5' -----CTGGGCTTGGGGAGAGAGGC- 3' Zfand2b mmu-miR-496 beg:188 end:207 pic:3' CTCTAACCGGTACATTATGAGT 5'& |||||. | |.|.||| &5' -----TGGCCGGGAAGTGCTC- 3' Zfand2b mmu-miR-497 beg:159 end:181 pic:3' ATGTTTGGTGTCACACGACGAC 5'& .||.|.| |||||||| &5' --TAAGCTAGCTC-TGCTGCTG 3' Zfand2b mmu-miR-668 beg:94 end:115 pic:3' CCATCACCCGGCTCGG-CTCACTGT 5'& ||| ||| ||| ||||||| &5' ---AGT--GCCAAGCAGGAGTGAC- 3' Zfand2b mmu-miR-669h-5p beg:146 end:159 pic:3' CGTGAGTTGATATGTGGGTACGTA 5'& ||||.|||||| &5' ------------ACACTCATGCA- 3' Zfand2b mmu-miR-670 beg:288 end:310 pic:3' AAGTGGTGTA---TGTGAGTCCCTA 5'& .|||||| .|| |||||| &5' ---GCCACATGTAGCAGACAGGGA- 3' Zfand2b mmu-miR-670 beg:47 end:69 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& || ||| . | | |||||| &5' -TCTCCAGGGTC-CACAGGGA- 3' Zfand2b mmu-miR-708star beg:194 end:215 pic:3' GATCTTCGAGTGTCAGATCAAC 5'& .||||. .| |||.|||| &5' --GGAAGT--GCTCTCTGGTTG 3' Zfand2b mmu-miR-712 beg:131 end:150 pic:3' CCATGGCGGGCC-CA-CTTCCTC 5'& |||||| | |||||| &5' ------GCCCGGAGAGGAAGGA- 3' Zfand2b mmu-miR-744 beg:154 end:176 pic:3' ACGACAATCGG---GATCGGGGCGT 5'& ||| |||. |||||.|.|| &5' TGC----AGCTAAGCTAGCTCTGC- 3' Zfand2b mmu-miR-760 beg:122 end:141 pic:3' AGGGGTGTCT-GGGTCTCGGC 5'& |.|||..|| |||.||| &5' -CTCCATGGAGCCCGGAG--- 3' Zfand2b mmu-miR-761 beg:166 end:179 pic:3' ACACAGTCAAAGTGGGACGACG 5'& .|.||||||| &5' ------------GCTCTGCTGC 3' Zfand2b mmu-miR-764-5p beg:103 end:124 pic:3' TCCTC-CTGTACACTCGTGG 5'& ||||| |||.|| ||| || &5' AGGAGTGACGTG-GAGGAC- 3' Zfand2b mmu-miR-764-5p beg:139 end:160 pic:3' TCC-TCCTGTACACTCGTGG 5'& ||| |||||| ||| | &5' AGGAAGGACACTCATGCAGC 3' Zfand2b mmu-miR-804 beg:2 end:29 pic:3' AGGTCC--ACTCCTTG--TTGAGTGT 5'& | || ||.|||. ..||||| &5' -CTGGGCTTGGGGAGAGAGGCTCAC- 3' Zfand2b mmu-miR-9 beg:19 end:36 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& .||| ||||.|| &5' ------GGCTCAC---CCAAGGA 3' Zfand2b mmu-miR-99bstar beg:0 end:14 pic:3' GCCTGGGTGTCTGTGCTCGAAC 5'& |.||| .|.||||| &5' --GGCCC-------TGGGCTTG 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Zfand2b RAID00413237 mmu-miR-6379 miRNA MIMAT0025125 Zfand2b mRNA 68818 Prediction 0.1828 Zfand2b RAID00528160 mmu-miR-221-3p miRNA MIMAT0000669 Zfand2b mRNA 68818 Prediction 0.1828 Zfand2b RAID00988177 mmu-miR-339-5p miRNA MIMAT0000584 Zfand2b mRNA 68818 Prediction 0.1828 Zfand2b RAID01197392 mmu-miR-96-5p miRNA MIMAT0000541 Zfand2b mRNA 68818 Prediction 0.1828 Zfand2b RAID01774377 mmu-miR-6950-5p miRNA MIMAT0027800 Zfand2b mRNA 68818 Prediction 0.1828 Zfand2b RAID01863331 mmu-miR-135a-2-3p miRNA MIMAT0017064 Zfand2b mRNA 68818 Prediction 0.1828 Zfand2b RAID02609079 mmu-miR-483-3p miRNA MIMAT0003120 Zfand2b mRNA 68818 Prediction 0.1828 Zfand2b RAID02796872 mmu-miR-504-5p miRNA MIMAT0004889 Zfand2b mRNA 68818 Prediction 0.1828 Zfand2b RAID03175745 mmu-miR-222-3p miRNA MIMAT0000670 Zfand2b mRNA 68818 Prediction 0.1828