DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Neb ATTTA 131-20860 21099-21103;21126-21130;21163-21167

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004523 mmu-miR-29b* 17996 Neb auuUGGUGGUAUA---CUUUGGUCg | ::::||:| ||||||| uguAGUGUUAUGUAACCAAACCAGu 2 20 388 412 [mm9:2:51992366-51992390:-] 0.5176 142 7 -13.66 -0.5096 MIMAT0000129 mmu-miR-30a* 17996 Neb cgacgUUU--GUAGGCUGACUUUc ||| :|| ||||||| uaauaAAAUCUAUAGUACUGAAAu 2 18 570 593 [mm9:2:51992185-51992208:-] 0.5136 144 7 -7.42 -1.0553 MIMAT0004526 mmu-miR-101a* 17996 Neb cguaGUCGUGACACUA-UUGACu :||:|||| || ||||| ucuaUAGUACUGAAAUAAACUGu 2 19 578 600 [mm9:2:51992178-51992200:-] 0.5066 130 0 -16.88 -0.9823 MIMAT0000143 mmu-miR-9* 17996 Neb ugAAAGCCAAUAGAUCGAAAua |||| | : |||||| acUUUC--CAAAUAAGCUUUua 3 21 307 326 [mm9:2:51992452-51992471:-] 0.4692 121 0 -9.41 -0.1442 MIMAT0003473 mmu-miR-133a* 17996 Neb uaaacCAAGGUAAAAUGGUCg || : | ||||||| uccauGUAUAAACUUACCAGc 2 17 161 181 [mm9:2:51992597-51992617:-] 0.4672 144 7 -15.44 -0.5044 MIMAT0004539 mmu-miR-183* 17996 Neb aauaccgggaagccaUUAAGUg |||||| uucaguuuuaaaguaAAUUCAa 2 8 339 360 [mm9:2:51992418-51992439:-] 0.4802 120 6 -6.96 -0.1931 MIMAT0000249 mmu-miR-30e* 17996 Neb cgacAUUUGUAGG---C-UGACUUUc |||| |||: | ||||||| cuaaUAAA-AUCUAUAGUACUGAAAu 2 19 569 593 [mm9:2:51992185-51992209:-] 0.5136 146 7 -7.10 -1.0553 MIMAT0004572 mmu-miR-290-3p 17996 Neb cccgaauuuugauccgcCGUGAAa |||||| -----------------GCACUUc 2 8 1 7 [mm9:2:51992771-51992777:-] 0.7257 120 6 -5.49 -0.1131 MIMAT0000370 mmu-miR-292-3p 17996 Neb ugugaguuuuggaccgcCGUGAAa |||||| -----------------GCACUUc 2 8 1 7 [mm9:2:51992771-51992777:-] 0.7257 120 6 -7.32 -0.1131 MIMAT0004578 mmu-miR-300* 17996 Neb ugUUUCCUAUUGGAGAGAAGUu | | ||:| ||||||| uuACAUUAUGA--ACUCUUCAg 2 21 324 343 [mm9:2:51992435-51992454:-] 0.4747 141 7 -13.89 -1.0657 MIMAT0000549 mmu-miR-322* 17996 Neb cacAACGUCGCGA-AGUACAAa || ||| || ||||||| gcuUUCAAGCUCUCUCAUGUUu 2 19 79 100 [mm9:2:51992678-51992699:-] 0.4560 157 7 -13.18 -0.3012 MIMAT0004666 mmu-miR-33* 17996 Neb cacuacgUGACACCUUUGUAAc |:| | ||||||| cuucccaAUUAUAAAAACAUUu 2 16 414 435 [mm9:2:51992343-51992364:-] 0.5176 147 7 -3.94 -1.0501 MIMAT0004746 mmu-miR-409-5p 17996 Neb uacguuucaacgagccCAUUGGa |||||| gcuucuguaguguuauGUAACCa 2 8 383 405 [mm9:2:51992373-51992395:-] 0.5176 120 6 -11.72 -0.1218 MIMAT0003409 mmu-miR-467a 17996 Neb gcguauauguacgucCGUGAAu |||||| ---------------GCACUUc 2 8 1 7 [mm9:2:51992771-51992777:-] 0.7257 120 6 -9.06 -0.1131 MIMAT0002108 mmu-miR-467a-1* 17996 Neb cacAUCCA-CACACAUACAUAUa |:| | | | ||||||| ccaUGGUUACUCUCCAUGUAUAa 2 20 149 171 [mm9:2:51992607-51992629:-] 0.4672 142 7 -7.01 -0.5813 MIMAT0003190 mmu-miR-291b-3p 17996 Neb uguuuguuuuaccuaCGUGAAa |||||| ---------------GCACUUc 2 8 1 7 [mm9:2:51992771-51992777:-] 0.7257 120 6 -5.82 -0.1131 MIMAT0004820 mmu-miR-744* 17996 Neb uccaacuccaaucaCCGUUGUc ||||||| ucugcaacucugcaGGCAACAu 2 9 31 52 [mm9:2:51992726-51992747:-] 0.4472 140 7 -10.85 -0.3801 MIMAT0003478 mmu-miR-467b* 17996 Neb cacaACCA--CACACAUACAUAUa |||| | | ||||||| accaUGGUUACUCUCCAUGUAUAa 2 19 148 171 [mm9:2:51992607-51992630:-] 0.4672 145 7 -8.20 -0.5813 MIMAT0003481 mmu-miR-695 17996 Neb aaGUCAGUGGAUACGGGUUAGa ||||| |:| ||||||: acCAGUC-CUU---CCCAAUUa 2 21 407 424 [mm9:2:51992354-51992371:-] 0.5176 134 0 -16.29 -0.1730 MIMAT0003485 mmu-miR-455* 17996 Neb gcuacaUCAGGUUUCCG-UGUAu | ||:: |||| |||| ucugcaACUCUGCAGGCAACAUu 2 17 31 53 [mm9:2:51992725-51992747:-] 0.4472 120 0 -11.36 -0.1400 MIMAT0003512 mmu-miR-450b-3p 17996 Neb uacGUACGUUUUACAAGGGUUa || | |: ||||||| aacCAAACCAGUCCUUCCCAAu 2 20 401 422 [mm9:2:51992356-51992377:-] 0.5176 143 7 -11.79 -0.7682 MIMAT0003512 mmu-miR-450b-3p 17996 Neb uacGUACGUUU-UACAA-GGGUUa | | |||| || || ||||| ugaCUUACAAAUAUUUUACCCAAc 2 20 185 208 [mm9:2:51992570-51992593:-] 0.4809 126 0 -7.94 -1.1278 MIMAT0004236 mmu-miR-741 17996 Neb agaUGUAUCUUACCGUAGA-GAGu |||| ||| ||||| ||| ccaACAU-CAAU-UCAUCUGCUCa 2 21 204 225 [mm9:2:51992553-51992574:-] 0.4809 120 0 -13.11 -1.0997 MIMAT0004839 mmu-miR-743b-5p 17996 Neb acuACCUGUGGUCAGACUUGu | ||||:|| ||||||| cauUUGACAUCAUUCUGAACa 2 19 431 451 [mm9:2:51992327-51992347:-] 0.5176 170 7 -22.43 -1.2040 MIMAT0004842 mmu-miR-879 17996 Neb ccgaaUCUCGAUA-UUCG-GAGa ||:||| | |||| ||| acaccAGGGCUUUCAAGCUCUCu 2 17 71 93 [mm9:2:51992685-51992707:-] 0.4560 123 0 -17.46 -0.2417 MIMAT0004885 mmu-miR-467c 17996 Neb guguauauguacgugCGUGAAu |||||| ---------------GCACUUc 2 8 1 7 [mm9:2:51992771-51992777:-] 0.7257 120 6 -6.07 -0.1131 MIMAT0004886 mmu-miR-467d 17996 Neb gcguauauguacgcgCGUGAAu |||||| ---------------GCACUUc 2 8 1 7 [mm9:2:51992771-51992777:-] 0.7257 120 6 -12.13 -0.1131 MIMAT0004887 mmu-miR-467d* 17996 Neb cacAUCCA-CACACAUACAUAUa |:| | | | ||||||| ccaUGGUUACUCUCCAUGUAUAa 2 20 149 171 [mm9:2:51992607-51992629:-] 0.4672 142 7 -7.01 -0.5813 MIMAT0004892 mmu-miR-568 17996 Neb cacacauAUGUAAAUAUGUa |: ||||||||| uuuccccUGGAUUUAUACAu 2 14 256 275 [mm9:2:51992503-51992522:-] 0.4809 153 7 -9.89 -0.5638 MIMAT0004932 mmu-miR-878-5p 17996 Neb acagaacuguAGGUUGAUCUAu |: |||||||| ugcucaguucUUAAACUAGAUu 2 13 220 241 [mm9:2:51992537-51992558:-] 0.4809 148 7 -10.69 -0.9920 MIMAT0005294 mmu-miR-467e* 17996 Neb uaUAUCCA-CACACAUACAUAUa ||:| | | | ||||||| ccAUGGUUACUCUCCAUGUAUAa 2 21 149 171 [mm9:2:51992607-51992629:-] 0.4672 147 7 -7.01 -0.5813 MIMAT0007864 mmu-miR-1897-5p 17996 Neb gggGGAGAAAGA--GGUAGGUUUc | || |||| |||||||| ugaCAUCAUUCUGAACAUCCAAAc 2 20 435 458 [mm9:2:51992320-51992343:-] 0.5176 158 7 -15.72 -0.6913 MIMAT0007878 mmu-miR-1894-3p 17996 Neb gagggaagUGGGAGAGGGAACg :||||:||||||| caagagaaGCCCUUUCCCUUGu 2 15 473 494 [mm9:2:51992284-51992305:-] 0.5306 162 7 -25.47 -0.8791 MIMAT0009419 mmu-miR-669m 17996 Neb uaUA-CAAACACACCUACAUAUa || ||| | | ||||||| ccAUGGUUACUCUCCAUGUAUAa 2 21 149 171 [mm9:2:51992607-51992629:-] 0.4672 151 7 -7.01 -0.5813 MIMAT0009424 mmu-miR-1953 17996 Neb gucUUCGGACUCUU---GAAAGGGu || | ||||| ||||||| agaAAACAAGAGAAGCCCUUUCCCu 2 20 467 491 [mm9:2:51992287-51992311:-] 0.5306 154 7 -20.29 -0.4376 MIMAT0009424 mmu-miR-1953 17996 Neb gucuucggacucuUGAAAGGgu ||||||| cauguaaaaauuuACUUUCCaa 3 10 294 315 [mm9:2:51992463-51992484:-] 0.4692 125 0 -11.97 -0.2577 MIMAT0009431 mmu-miR-1958 17996 Neb ugaaugacgaAGGUGAAAGGau |::||||||| cauguaaaaaUUUACUUUCCaa 3 13 294 315 [mm9:2:51992463-51992484:-] 0.4692 132 0 -11.06 -0.2577 MIMAT0009432 mmu-miR-1959 17996 Neb gaGGUGACUCGAUGUAGGgg :||:| | |||||| caUCAUUCUG-AACAUCCaa 3 19 438 456 [mm9:2:51992322-51992340:-] 0.5176 124 0 -15.46 -0.1292 MIMAT0011211 mmu-miR-2135 17996 Neb caaagccGGGGUUCUGGAGa |::||||||||| ----gcaCUUCAAGACCUCc 2 14 1 16 [mm9:2:51992762-51992777:-] 0.5289 157 7 -21.33 -0.7363 MIMAT0011217 mmu-miR-2141 17996 Neb uugaaaagacugUGGAGGa |||||| --gcacuucaagACCUCCa 2 8 1 17 [mm9:2:51992761-51992777:-] 0.5289 120 6 -11.01 -0.1192 MIMAT0000128 mmu-miR-30a 17996 Neb gaaggucagcuccuACAAAUGu ||||||| gaagcccuuucccuUGUUUACu 2 9 478 499 [mm9:2:51992279-51992300:-] 0.5306 140 7 -8.52 -0.6704 MIMAT0000130 mmu-miR-30b 17996 Neb ucgacucacauccuACAAAUGu ||||||| gaagcccuuucccuUGUUUACu 2 9 478 499 [mm9:2:51992279-51992300:-] 0.5306 140 7 -7.32 -0.6704 MIMAT0000133 mmu-miR-101a 17996 Neb aagucaaUAG-UGUCAUGACau ||| |:||||||| uaauaaaAUCUAUAGUACUGaa 3 15 570 591 [mm9:2:51992187-51992208:-] 0.5136 137 0 -14.51 -0.2436 MIMAT0004528 mmu-miR-125a-3p 17996 Neb ccGAGGGUUCUUGGAGUGGACa |||:|| | ::||||||| cuCUCUCAUG-UUUUCACCUGu 2 21 88 108 [mm9:2:51992670-51992690:-] 0.4575 158 7 -25.07 -0.8694 MIMAT0000149 mmu-miR-137 17996 Neb gauGCGCAUAA---GAAUUCGUUAUu | :|| || || ||||||| ucuCAUGUUUUCACCUGUAGCAAUAu 2 21 91 116 [mm9:2:51992662-51992687:-] 0.4575 147 7 -11.10 -0.6648 MIMAT0000150 mmu-miR-138 17996 Neb gccggacUAAGUGUU---GUGGUCGa || :|:|| :|||||| acucuccAUGUAUAAACUUACCAGCa 2 17 157 182 [mm9:2:51992596-51992621:-] 0.4672 131 6 -15.66 -0.1454 MIMAT0000224 mmu-miR-194 17996 Neb agguguaccucaacgACAAUGu |||||| caauaucauuucaugUGUUACa 2 8 111 132 [mm9:2:51992646-51992667:-] 0.4590 120 6 -10.22 -0.1064 MIMAT0000236 mmu-miR-203 17996 Neb gaucaccaggauUUGUAAAGUg ||||||||| aacucugcaggcAACAUUUCAg 2 11 36 57 [mm9:2:51992721-51992742:-] 0.4472 150 7 -10.86 -0.2448 MIMAT0000236 mmu-miR-203 17996 Neb gaucaccaggauUUGUAAAGUg | ||||||| accuguagcaauAUCAUUUCAu 2 11 103 124 [mm9:2:51992654-51992675:-] 0.4590 142 7 -11.59 -0.7907 MIMAT0000248 mmu-miR-30e 17996 Neb gaaggucaguuccuACAAAUGu ||||||| gaagcccuuucccuUGUUUACu 2 9 478 499 [mm9:2:51992279-51992300:-] 0.5306 140 7 -8.57 -0.6704 MIMAT0000368 mmu-miR-291a-3p 17996 Neb cguguguuucaccuuCGUGAAa |||||| ---------------GCACUUc 2 8 1 7 [mm9:2:51992771-51992777:-] 0.7257 120 6 -7.34 -0.1131 MIMAT0000372 mmu-miR-294 17996 Neb uguguguuuucccuuCGUGAAa |||||| ---------------GCACUUc 2 8 1 7 [mm9:2:51992771-51992777:-] 0.7257 120 6 -5.40 -0.1131 MIMAT0000373 mmu-miR-295 17996 Neb ucugaguuuucaucauCGUGAAa |||||| ----------------GCACUUc 2 8 1 7 [mm9:2:51992771-51992777:-] 0.7257 120 6 -5.70 -0.1131 MIMAT0000380 mmu-miR-302a 17996 Neb agugguuuuguaccuuCGUGAAu |||||| ----------------GCACUUc 2 8 1 7 [mm9:2:51992771-51992777:-] 0.7257 120 6 -7.74 -0.1131 MIMAT0000514 mmu-miR-30c 17996 Neb cgacucucacauccuACAAAUGu ||||||| agaagcccuuucccuUGUUUACu 2 9 477 499 [mm9:2:51992279-51992301:-] 0.5306 140 7 -5.64 -0.6704 MIMAT0000515 mmu-miR-30d 17996 Neb gaaggucagccccuACAAAUGu ||||||| gaagcccuuucccuUGUUUACu 2 9 478 499 [mm9:2:51992279-51992300:-] 0.5306 140 7 -8.52 -0.6704 MIMAT0000530 mmu-miR-21 17996 Neb agUUGUAGUCAGA---CUAUUCGAu || |:| |:| ||||||| aaAAAUUUACUUUCCAAAUAAGCUu 2 21 299 323 [mm9:2:51992455-51992479:-] 0.4692 143 7 -7.34 -1.1010 MIMAT0000546 mmu-miR-103 17996 Neb aguAUCGGGACAU-GUUACG-ACGa || |: |||: :||||| ||| guuUA-CUAUGUGUUAAUGCUUGCg 2 21 493 516 [mm9:2:51992262-51992285:-] 0.5306 121 0 -12.88 -1.1141 MIMAT0000616 mmu-miR-101b 17996 Neb aagucgaUAG-UGUCAUGACau ||| |:||||||| uaauaaaAUCUAUAGUACUGaa 3 15 570 591 [mm9:2:51992187-51992208:-] 0.5136 137 0 -14.51 -0.2393 MIMAT0000647 mmu-miR-107 17996 Neb acuAUCGGGACAU-GUUACG-ACGa || |: |||: :||||| ||| guuUA-CUAUGUGUUAAUGCUUGCg 2 21 493 516 [mm9:2:51992262-51992285:-] 0.5306 121 0 -12.88 -1.1141 MIMAT0000656 mmu-miR-139-5p 17996 Neb gaccUCUGUGCACGUGACAUCu | |||:| | ||||||| auuuAUACAUG-GAACUGUAGa 2 19 266 286 [mm9:2:51992492-51992512:-] 0.4751 156 7 -19.13 -0.8302 MIMAT0000666 mmu-miR-320 17996 Neb agcgggaGAGUUGG--GUCGAAaa || :|:: |||||| ucuuaaaCUAGAUUUACAGCUUaa 3 16 228 251 [mm9:2:51992527-51992550:-] 0.4809 122 0 -9.34 -0.1741 MIMAT0000677 mmu-miR-7a 17996 Neb ugUUGUUUUAGUGAUCA-GAAGGu ||| || || ||| ||||| guAACCAA---ACCAGUCCUUCCc 2 22 399 419 [mm9:2:51992359-51992379:-] 0.5176 121 0 -11.15 -1.0228 MIMAT0000678 mmu-miR-7b 17996 Neb ugUUGUUUUAGUGUUCA-GAAGGu ||| || || ||| ||||| guAACCAA---ACCAGUCCUUCCc 2 22 399 419 [mm9:2:51992359-51992379:-] 0.5176 121 0 -11.61 -1.0228 MIMAT0004745 mmu-miR-384-5p 17996 Neb uguaacggauccuuAACAAAUGu |||||||| agaagcccuuucccUUGUUUACu 2 10 477 499 [mm9:2:51992279-51992301:-] 0.5306 145 7 -10.94 -0.6666 MIMAT0003374 mmu-miR-302b 17996 Neb gaugauuuuguaccuuCGUGAAu |||||| ----------------GCACUUc 2 8 1 7 [mm9:2:51992771-51992777:-] 0.7257 120 6 -5.14 -0.1131 MIMAT0003377 mmu-miR-302d 17996 Neb ugugaguuuguaccuuCGUGAAu |||||| ----------------GCACUUc 2 8 1 7 [mm9:2:51992771-51992777:-] 0.7257 120 6 -5.14 -0.1131 MIMAT0004847 mmu-miR-882 17996 Neb ugauuacgcgauugaGAGAGGa |||||| uagaaaccaugguuaCUCUCCa 2 8 143 164 [mm9:2:51992614-51992635:-] 0.4536 120 6 -12.81 -0.1006 MIMAT0004895 mmu-miR-590-5p 17996 Neb gacGUGAAAAUACUUAUUCGAg :|| ||| |||||||| auuUAC-UUUCCAAAUAAGCUu 2 20 303 323 [mm9:2:51992455-51992475:-] 0.4692 153 7 -12.68 -1.0940

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G038018 Neb Mus musculus 17996

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Neb mmu-miR-139-5p beg:269 end:287 pic:3' GACCTCTGTGCACGTGACATCT 5'& |||.| |||||||| &5' ------ACATGGA-ACTGTAGA 3' Neb mmu-miR-2135 beg:1 end:16 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& |..||||||||| &5' -------CTTCAAGACCTC- 3' Neb mmu-miR-590-5p beg:304 end:324 pic:3' GACGTGAAAATACTTATTCGAG 5'& .||||| ||||||||. &5' ---TACTTTCCA-AATAAGCTT 3' Neb mmu-miR-1897-5p beg:440 end:458 pic:3' GGGGGAGAAAGAGGTAGGTTTC 5'& .||| |||||||| &5' ----TTCTGAA--CATCCAAA- 3' Neb mmu-miR-203 beg:42 end:57 pic:3' GATCACCAGGATTTGTAAAGTG 5'& || | ||||||||| &5' -----GG-C---AACATTTCA- 3' Neb mghv-miR-M1-1 beg:510 end:528 pic:3' TTTCCTTCATGCC-GGTAAAGAT 5'& |.|| .|||||||. &5' --------TGCGTTTCATTTCTG 3' Neb mmu-miR-1953 beg:474 end:491 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& ||||||| ||||||| &5' -AGAAGCC------CTTTCCC- 3' Neb mmu-miR-744star beg:42 end:52 pic:3' TCCAACTCCAATCACCGTTGTC 5'& ||||||| &5' --------------GGCAACA- 3' Neb mcmv-miR-m21-1 beg:255 end:265 pic:3' GCCGAACTTGCACAGGGGATA 5'& ||||||. &5' -------------TCCCCTG- 3' Neb mghv-miR-M1-6 beg:333 end:349 pic:3' TTTTGGTGGAGTGTGTCAAAGT 5'& ||| ||||||.| &5' --------CTCTT-CAGTTTTA 3' Neb mmu-miR-125a-3p beg:87 end:109 pic:3' CCGAGGGTTCTTGGAGTGGACA 5'& |||.|| ..|||||||| &5' --CTCTCATGT-TTTCACCTGT 3' Neb mmu-miR-141 beg:379 end:398 pic:3' GGTAGAAATGGT--CTGTCACAAT 5'& |.|. | .||||||| &5' -------TGCTTCTG-TAGTGTTA 3' Neb mmu-miR-143 beg:507 end:526 pic:3' CTCGATGTCACGAAGTAGAGT 5'& ||| | |.|||||.|| &5' --GCTT--GCGTTTCATTTC- 3' Neb mmu-miR-146a beg:209 end:233 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& ||..||| ||||||||.| &5' AATTCATCTGC-TCAGTTCTTA 3' Neb mmu-miR-146b beg:220 end:233 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& ||||||||.| &5' ------------TCAGTTCTTA 3' Neb mmu-miR-151-3p beg:1 end:26 pic:3' GGAGTTCCTC-GG-AGTCAGATC 5'& |.||||| || |||||||. &5' CTTCAAGACCTCCATCAGTCTG- 3' Neb mmu-miR-151-3p beg:50 end:71 pic:3' GGAGTT-CCTC-GGAGTCAGATC 5'& .|||. |||| |.||||| &5' -TTCAGTGGAGACTTCAGT---- 3' Neb mmu-miR-185 beg:243 end:261 pic:3' AGTCCTTGACGG---AAAGAGAGGT 5'& ||. |||.|.||| &5' ---------GCTTAATTTTTTTCC- 3' Neb mmu-miR-1927 beg:220 end:240 pic:3' AGTCAGGGATTGTAGGTCTCCAG 5'& |||||.|.||| |.||| &5' TCAGTTCTTAAA--CTAGA---- 3' Neb mmu-miR-1953 beg:242 end:262 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& |||.| .|||||| &5' ----AGCTTAATTTTTTTCCC- 3' Neb mmu-miR-1954 beg:23 end:46 pic:3' TTGTCCCAGAG--TGAGACGTCA 5'& .||| ||| ||||||||| &5' -GCAGTATCTGCAACTCTGCAG- 3' Neb mmu-miR-1954 beg:15 end:30 pic:3' TTGTCCCAGAGTGAGACGTCA 5'& ||| |||||||| &5' ---------TCAGTCTGCAGT 3' Neb mmu-miR-1954 beg:380 end:394 pic:3' TTGTCCCAGAGTG-AGACGTCA 5'& .| ||||.||| &5' -----------GCTTCTGTAGT 3' Neb mmu-miR-1960 beg:575 end:590 pic:3' TCGGGAGAAGATTGTCGTGACC 5'& ||| |.||.|||| &5' --------TCT-ATAGTACTG- 3' Neb mmu-miR-1969 beg:199 end:221 pic:3' TGGGTACAATTTCAGAGGTAGAA 5'& ||||| |.||||| &5' ACCCAACATCAA---TTCATCT- 3' Neb mmu-miR-1969 beg:158 end:182 pic:3' TGGGTACA-ATTTCAGAGGTAGAA 5'& .|||||| |||| |. ||| | &5' -TCCATGTATAAACTTACCAGC-- 3' Neb mmu-miR-1971 beg:309 end:328 pic:3' AGAGTCGGG----TCGGAAATG 5'& || |||.||||| &5' ------CCAAATAAGCTTTTAC 3' Neb mmu-miR-1981 beg:305 end:328 pic:3' CGGTGCAGATTCGGG----TCGGAAATG 5'& || || |||.||||| &5' -------CTTT-CCAAATAAGCTTTTAC 3' Neb mmu-miR-1982star beg:400 end:422 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& || |||| ||.|||||| &5' CCAAACCAGT-CCTTCCCAA 3' Neb mmu-miR-200a beg:379 end:398 pic:3' TGTAGCAATGGT--CTGTCACAAT 5'& |.|. | .||||||| &5' -------TGCTTCTG-TAGTGTTA 3' Neb mmu-miR-203 beg:101 end:125 pic:3' GATCACCAGGATTT-------GTAAAGTG 5'& |||. |||||||. &5' --------CCTGTAGCAATATCATTTCAT 3' Neb mmu-miR-217 beg:11 end:31 pic:3' AGGTCAGTCAAGGACTACGTCAT 5'& |||| |||| || ||||||| &5' TCCA-TCAG-TC----TGCAGTA 3' Neb mmu-miR-224 beg:173 end:192 pic:3' TTGCCTTGGT-GATCACTGAAT 5'& |||| | ||||||| &5' ------ACCAGCAAATGACTTA 3' Neb mmu-miR-30c-2star beg:406 end:421 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& |||.| .||||| &5' --------CAGTCC-TTCCCA- 3' Neb mmu-miR-322star beg:83 end:101 pic:3' CACAACGTCGCGA-AGTACAAA 5'& ||| || |||||||| &5' -------AGCTCTCTCATGTTT 3' Neb mmu-miR-3473 beg:149 end:165 pic:3' CCGACTCGGTAGAGAGGT 5'& || |..| ||||||| &5' ---TG-GTTA-CTCTCCA 3' Neb mmu-miR-384-5p beg:478 end:499 pic:3' TGTAACGGATCCTT-AACAAATGT 5'& ||| |||||||| &5' -----GCCCTTTCCCTTGTTTAC- 3' Neb mmu-miR-409-3p beg:35 end:55 pic:3' TCCCCAAGTGGC--TCGTTGTAAG 5'& | |.| .||||||||. &5' -------CTCTGCAGGCAACATTT 3' Neb mmu-miR-433 beg:316 end:335 pic:3' TGTGGCTCCTCGG----GTAGTACTA 5'& |||. |||.|||| &5' ---------AGCTTTTACATTATGA- 3' Neb mmu-miR-450b-3p beg:294 end:316 pic:3' TACGTACGTTTTAC----AAGGGTTA 5'& |||.|||| ||.|||| &5' ----ATGTAAAAATTTACTTTCCAA- 3' Neb mmu-miR-452 beg:28 end:49 pic:3' CAGA-GTCAAAGGAGACGTTTGT 5'& ||| || |||||||..|| &5' -TCTGCAA----CTCTGCAGGCA 3' Neb mmu-miR-491 beg:147 end:166 pic:3' GGAGTACCTTCCCAAGGGGTGA 5'& ||||| ||.|||. &5' ---CATGGTTAC--TCTCCAT- 3' Neb mmu-miR-493 beg:66 end:86 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& |.|||| |||.|.|||| &5' ----GTACACC--AGGGCTTTCA 3' Neb mmu-miR-542-3p beg:111 end:133 pic:3' AAAGTCAATAGT----TAGACAGTGT 5'& ||||| || |||.||| &5' -------TATCATTTCATGTGTTACA 3' Neb mmu-miR-654-5p beg:160 end:180 pic:3' TGTGTACAAGACGTCGAATGGT 5'& ||||| ||||||| &5' ---CATGTATAAA--CTTACCA 3' Neb mmu-miR-666-3p beg:14 end:30 pic:3' TCGTCCGCTAGTGCGACGTCGG 5'& |||| ||||||. &5' --------ATCAGTCTGCAGT- 3' Neb mmu-miR-671-5p beg:61 end:85 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& ||.|||. | |||||||||.| &5' CTTCAGTA-CACCAGGGCTTTC- 3' Neb mmu-miR-674 beg:38 end:60 pic:3' ATGTGGTGAGGGTAGAGTCACG 5'& |.|| .| |||.|||||| &5' TGCAG-GCAA-CATTTCAGTG- 3' Neb mmu-miR-695 beg:406 end:424 pic:3' AAGTCAGTGGATACGGGTTAGA 5'& ||||| |.| ||||||. &5' --CAGTC-CTT---CCCAATT- 3' Neb mmu-miR-743b-5p beg:433 end:452 pic:3' ACTACCTGTGGTCAGACTTGT 5'& ||||.|| |||||||| &5' -----GACATCATTCTGAACA 3' Neb mmu-miR-7b beg:124 end:143 pic:3' TGTTGTTTTAGTGTTC-AGAAGGT 5'& .|.|||| |||||.| &5' --------GTTACAATCTCTTCTA 3' Neb mmu-miR-877 beg:122 end:144 pic:3' GGGACGCGG---TAGAGGAGATG 5'& ||.|. |||||.||||. &5' ---TGTGTTACAATCTCTTCTAT 3' Neb mmu-miR-1894-3p beg:478 end:495 pic:3' GAGGGAAGTGGGAGAGGGAACG 5'& .||||.|||||||. &5' --------GCCCTTTCCCTTGT 3' Neb mmu-miR-133astar beg:171 end:182 pic:3' TAAACCAAGGTAAAATGGTCG 5'& |||||||| &5' -------------TTACCAGC 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Neb RAID00054641 mmu-miR-6957-5p miRNA MIMAT0027814 Neb mRNA 17996 Prediction 0.1828 Neb RAID00155317 mmu-miR-101a-3p miRNA MIMAT0000133 Neb mRNA 17996 Prediction 0.1828 Neb RAID00200244 mmu-miR-743b-5p miRNA MIMAT0004839 Neb mRNA 17996 Prediction 0.1828 Neb RAID00445159 mmu-miR-30b-5p miRNA MIMAT0000130 Neb mRNA 17996 Prediction 0.2202 Neb RAID00544902 mmu-miR-3073a-3p miRNA MIMAT0014855 Neb mRNA 17996 Prediction 0.1828 Neb RAID00652718 mmu-miR-3092-5p miRNA MIMAT0014905 Neb mRNA 17996 Prediction 0.1828 Neb RAID00743088 mmu-miR-3089-5p miRNA MIMAT0014899 Neb mRNA 17996 Prediction 0.1828 Neb RAID00844999 mmu-miR-7224-3p miRNA MIMAT0028417 Neb mRNA 17996 Prediction 0.1828 Neb RAID00874408 mmu-miR-590-5p miRNA MIMAT0004895 Neb mRNA 17996 Prediction 0.2202 Neb RAID00895834 mmu-miR-201-3p miRNA MIMAT0017001 Neb mRNA 17996 Prediction 0.1828 Neb RAID00951384 mmu-miR-21a-5p miRNA MIMAT0000530 Neb mRNA 17996 Prediction 0.1828 Neb RAID00953614 mmu-miR-139-5p miRNA MIMAT0000656 Neb mRNA 17996 Prediction 0.1828 Neb RAID00979802 mmu-miR-21b miRNA MIMAT0025121 Neb mRNA 17996 Prediction 0.1828 Neb RAID01000551 mmu-miR-125a-3p miRNA MIMAT0004528 Neb mRNA 17996 Prediction 0.2202 Neb RAID01425825 mmu-miR-291a-3p miRNA MIMAT0000368 Neb mRNA 17996 Prediction 0.1828 Neb RAID01499828 mmu-miR-3572-3p miRNA MIMAT0020636 Neb mRNA 17996 Prediction 0.1828 Neb RAID01662098 mmu-miR-7053-5p miRNA MIMAT0028010 Neb mRNA 17996 Prediction 0.1828 Neb RAID01754116 mmu-miR-294-3p miRNA MIMAT0000372 Neb mRNA 17996 Prediction 0.1828 Neb RAID01809545 mmu-miR-7a-5p miRNA MIMAT0000677 Neb mRNA 17996 Prediction 0.1828 Neb RAID01814368 mmu-miR-30e-5p miRNA MIMAT0000248 Neb mRNA 17996 Prediction 0.2202 Neb RAID01844705 mmu-miR-103-3p miRNA MIMAT0000546 Neb mRNA 17996 Prediction 0.1828 Neb RAID02131329 mmu-miR-30c-5p miRNA MIMAT0000514 Neb mRNA 17996 Prediction 0.2202 Neb RAID02164862 mmu-miR-203-3p miRNA MIMAT0000236 Neb mRNA 17996 Prediction 0.1828 Neb RAID02410686 mmu-miR-384-5p miRNA MIMAT0004745 Neb mRNA 17996 Prediction 0.2202 Neb RAID02576726 mmu-miR-302b-3p miRNA MIMAT0003374 Neb mRNA 17996 Prediction 0.1828 Neb RAID02583995 mmu-miR-138-5p miRNA MIMAT0000150 Neb mRNA 17996 Prediction 0.1828 Neb RAID02610792 mmu-miR-302d-3p miRNA MIMAT0003377 Neb mRNA 17996 Prediction 0.1828 Neb RAID02724785 mmu-miR-101b-3p miRNA MIMAT0000616 Neb mRNA 17996 Prediction 0.1828 Neb RAID02810988 mmu-miR-7234-5p miRNA MIMAT0028436 Neb mRNA 17996 Prediction 0.1828 Neb RAID02979222 mmu-miR-3097-5p miRNA MIMAT0014915 Neb mRNA 17996 Prediction 0.1828 Neb RAID03183771 mmu-miR-302a-3p miRNA MIMAT0000380 Neb mRNA 17996 Prediction 0.1828 Neb RAID03196487 mmu-miR-101c miRNA MIMAT0019349 Neb mRNA 17996 Prediction 0.1828 Neb RAID03309974 mmu-miR-5128 miRNA MIMAT0020639 Neb mRNA 17996 Prediction 0.1828 Neb RAID03314889 mmu-miR-107-3p miRNA MIMAT0000647 Neb mRNA 17996 Prediction 0.1828 Neb RAID03330030 mmu-miR-6388 miRNA MIMAT0025135 Neb mRNA 17996 Prediction 0.1828 Neb RAID03371513 mmu-miR-295-3p miRNA MIMAT0000373 Neb mRNA 17996 Prediction 0.1828 Neb RAID03380254 mmu-miR-882 miRNA MIMAT0004847 Neb mRNA 17996 Prediction 0.1828 Neb RAID03395093 mmu-miR-7b-5p miRNA MIMAT0000678 Neb mRNA 17996 Prediction 0.1828 Neb RAID03474474 mmu-miR-6948-5p miRNA MIMAT0027796 Neb mRNA 17996 Prediction 0.1828 Neb RAID03655028 mmu-miR-194-5p miRNA MIMAT0000224 Neb mRNA 17996 Prediction 0.1828 Neb RAID03675452 mmu-miR-320-3p miRNA MIMAT0000666 Neb mRNA 17996 Prediction 0.1828 Neb RAID03771822 mmu-miR-30d-5p miRNA MIMAT0000515 Neb mRNA 17996 Prediction 0.2202 Neb RAID03906782 mmu-miR-137-3p miRNA MIMAT0000149 Neb mRNA 17996 Prediction 0.2202 Neb RAID04020844 mmu-miR-30a-5p miRNA MIMAT0000128 Neb mRNA 17996 Prediction 0.2202