iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

PPI - IID
Symbol 1	Symbol 2	PMID	DBs	Evidence Type	Adipose Tissue	Adrenal Gland	Amygdala	Bone	Bone Marrow	Brain	Dorsal Root Ganglia	Eye	Heart	Hindgut	Hypothalamus	Kidney	Liver	Lung	Lymph Nodes	Mammary Gland	Midgut	Neurons	Ovary	Pancreas	Pituitary Gland	Placenta	Prostate	Salivary Gland	Skeletal Muscle	Small Intestine	Spleen	Stomach	Testes	Uterus
Ube2e3	Rbx1	21343341	biogrid	exp	P
Ube2e3	Arih2	19256485	biogrid	exp, ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Rnf5	Ube2e3	19256485	biogrid	exp, ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Ipo11		i2d	exp, ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rnf220	20170641	intact	exp, ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rcbtb1	19256485	biogrid	exp, ortho
Ube2e3	Rnf25	10500182	biogrid	exp, ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Mid2			ortho	G	G	G			G	G	G	G	G	G	G		G		G	G	G	G	G	G	G	G	G		G		G		G
Ube2e3	Rnf130			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Ubox5			ortho	GP	G	G		G	G			G			G			G	G		G	G	G	G	G		G	G		G	G	G	G
Ube2e3	Dda1			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Spop			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rpl14			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Mul1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G		G	G
Mdm2	Ube2e3			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rnf167			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Eef1a1	Ube2e3			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Etv5			ortho	G		G			G	G			G	G			G		G		G			G				G		G
Ube2e3	Rnf150			ortho
Ube2e3	Rfwd3			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Trim39			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Nkd1			ortho		G												G					G	G								G		G
Ube2e3	Siah1a			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rnf2			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Lsm8			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Ufl1			ortho	P
Ube2e3	Fbxo25			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Trim27			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Huwe1			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Atxn1			ortho
Ube2e3	Rnf10			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ring1	Ube2e3			ortho	GP	G	G			G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rps27a			ortho	P
Ube2e3	Protein Trim38			ortho
Rangap1	Ube2e3			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Sae1			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rcbtb2			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rnf115			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Tgfbr1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rnf4			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Nedd4l			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Ube2e3	Znrf1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G		G	G	G	G
Ube2e3	Trim2			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Ube2e3	Cul4a			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Trim45			ortho
Ube2e3	Uba1			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Uba2			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rnf181			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Axin2	Ube2e3			ortho	G	G	G			G		G	G	G	G		G	G	G	G	G	G	G	G	G	G	G			G	G	G		G
Protein Ccdc121	Ube2e3			ortho
Brca1	Ube2e3			ortho				G	G			G		G					G	G	G		G			G				G	G		G	G
Ube2e3	Rnf11			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Nkd2			ortho														G																G
Ube2e3	Trim37			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G
Ube2e3	Fsd1			ortho
Ube2e3	Nfkbia			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Dtx3l			ortho	P
Ube2e3	Chuk			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Cul3			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Dzip3			ortho
Ube2e3	Arrdc1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Dvl2			ortho					G						G			G	G				G	G	G	G	G	G					G	G
Ube2e3	Trim50			ortho
Ube2e3	Cnot4			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Det1			ortho
Rnf13	Ube2e3			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Ubr5			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Nfe2l2			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Bard1	Ube2e3			ortho
Ube2e3	Cadps2			ortho	GP		G			G	G	G		G	G	G	G	G		G	G	G	G	G	G		G	G		G	G	G		G
Ube2e3	Ddb1			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rdh12			ortho				G	G			G							G						G						G	G
Ube2e3	Ube2l6			ortho				G	G				G				G	G	G							G				G	G
Ube2e3	Trim32			ortho	GP	G	G			G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Htt	Ube2e3			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rnf114			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rnf14			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Tardbp			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Dtx3			ortho	G	G	G	G	G	G	G	G	G		G	G		G	G	G		G	G	G	G	G	G	G	G		G	G	G	G
Ube2e3	Magoh			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Aup1			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Tbl1x			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Herc4			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Itch			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	March5			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Wwp2			ortho	GP	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Spry2			ortho	G	G	G	G	G	G	G	G	G	G	G	G		G		G	G	G	G	G	G	G	G	G	G	G	G	G		G
Mid1	Ube2e3			ortho
Ube2e3	Protein Znrf4, Zinc and ring finger 4			ortho																				G									G
Ube2e3	Rmnd5b			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ubc	Ube2e3			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Mkrn3			ortho
Acvr1	Ube2e3			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Klhl42			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G		G
Rnf165	Ube2e3			ortho
Ube2e3	Ufm1			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Chfr			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Protein Cep192	Ube2e3			ortho
Ube2e3	Cul1			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Stub1			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Tbl1xr1			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rnf8			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Arid3a			ortho	G	G		G	G	G		G	G		G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Ube2e3	Rnf166			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Ube2e3			ortho	GP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rnf43			ortho										G			G				G						G	G		G		G		G
Ube2e3	Rnf185			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

PPI - iRefIndex
UniProt A	UniProt B	Method	PMID	Interaction Type	Edge type	Num Participants
P52483		-	11809816	-	X	2
P52483	O35445	two hybrid	19256485	direct interaction	X	2
P52483	Q9Z1K6	two hybrid	19256485	direct interaction	X	2
P52483	Q8NDN9	pull down	19256485	direct interaction	X	2
P52483	Q96BH1	pull down	19256485	direct interaction	X	2
P52483	D3DPA4	affinity chromatography technology	15761153	physical association	X	2
P52483		two hybrid	19256485	direct interaction	X	2
P52483	P62878	pull down	21343341	direct interaction	X	2
P52483	Q9QZR0	two hybrid	10500182	direct interaction	X	2
P52483	P36897	affinity chromatography technology	15761153	physical association	X	2
P52483	Q6PDX6	anti tag coimmunoprecipitation	20170641	physical association	X	2

PPI - PINA
Gene A	Gene B	Method	Publications	Species A	Species B	Interaction Type	Source Database	Interaction Identidiers	Experimental Role(s) Interactor A	Experimental Role(s) Interactor B
Rnf5	Ube2e3	MI:0096(pull down)	19256485	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0407(direct interaction)	(biogrid)	BIOGRID_322691	prey	bait
Ube2e3	Arih2	MI:0096(pull down)	19256485	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0407(direct interaction)	(biogrid)	BIOGRID_322692	bait	prey
Ube2e3	Rnf220	MI:0415(enzymatic study)	20170641	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0915(physical association)	(intact)	UniProt_170865	bait	prey
Ube2e3	Rbx1	MI:0004(affinity chromatography technology)	21343341	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0407(direct interaction)	(biogrid)	BIOGRID_325653	prey	bait
Ube2e3	Rcbtb1	MI:0096(pull down)	19256485	taxid:10090(Mus musculus)	taxid:10090(Mus musculus)	MI:0407(direct interaction)	(biogrid)	BIOGRID_322690	bait	prey

PPI - HINT
Gene A	Gene B	PMID	Method	Quality
RNF5	UBE2E3	19256485	0018	LC
UBE2E3	RCBTB1	19256485	0018	LC
UBE2E3	RNF25	10500182	0018	LC
UBE2E3	ARIH2	19256485	0018	LC
UBE2E3	RBX1	21343341	0096	LC
UBE2E3	RNF220	20170641	0007	LC

PPI - Mentha
Protein A	Protein B	Gene A	Gene B	Score	PMID
Q04771	P52483	ACVR1	UBE2E3	0.126	15761153
P52483	P36897	UBE2E3	TGFBR1	0.126	15761153
Q9QZR0	P52483	RNF25	UBE2E3	0.309	10500182
P62878	P52483	RBX1	UBE2E3	0.309	21343341
P52483	O35445	UBE2E3	RNF5	0.309	19256485
Q6NXM2	P52483	RCBTB1	UBE2E3	0.309	19256485
Q6PDX6	P52483	RNF220	UBE2E3	0.21	20170641
Q8NDN9	P52483	RCBTB1	UBE2E3	0.309	19256485
Q96BH1	P52483	RNF25	UBE2E3	0.309	19256485
Q9Z1K6	P52483	ARIH2	UBE2E3	0.309	19256485