DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004524 mmu-miR-30b* 80708 Pacsin3 cuGCAUUUGUAGGU---GUAGGGUc || :|||||::: ||||||| cuCGGGAACAUUUGGGUCAUCCCAg 2 21 207 231 [mm9:2:91104670-91104694:+] 0.5657 159 7 -24.43 -0.1884 MIMAT0004529 mmu-miR-125b* 80708 Pacsin3 uccaggguucuuggACUGAACa ||||||| agcaccuucuuuugUGACUUGu 2 9 307 328 [mm9:2:91104770-91104791:+] 0.5657 140 7 -15.24 -0.8860 MIMAT0000367 mmu-miR-291a-5p 80708 Pacsin3 ucUCUCCCGGAGGUGAAACUAc || | || |: | |||||| guAGUGUGCAUUAAAUUUGAUu 2 21 327 348 [mm9:2:91104790-91104811:+] 0.5379 132 6 -6.57 -0.1319 MIMAT0004573 mmu-miR-293* 80708 Pacsin3 guuuuacagUGUGUCAAACUCa |:::|||||||| uuggggagaAUGUAGUUUGAGg 2 14 280 301 [mm9:2:91104743-91104764:+] 0.5657 153 7 -14.66 -0.6007 MIMAT0004575 mmu-miR-295* 80708 Pacsin3 cuUCACACGGGGUGUAAACUca ||||||| ::| |||||| guAGUGUGCAUUAAAUUUGAuu 3 21 327 348 [mm9:2:91104790-91104811:+] 0.5379 156 0 -17.72 -0.1070 MIMAT0000605 mmu-miR-350 80708 Pacsin3 cuuucacauacccGAAACACUu :||||||| uggcagcaccuucUUUUGUGAc 2 10 303 324 [mm9:2:91104766-91104787:+] 0.5657 141 7 -7.24 -0.6821 MIMAT0005444 mmu-miR-218-2* 80708 Pacsin3 gcgccacgaacuGUCUUGGUAc | ||||||| gaccugaaggccCUGAACCAUg 2 11 69 90 [mm9:2:91104532-91104553:+] 0.5176 142 7 -15.34 -0.2390 MIMAT0004781 mmu-miR-532-3p 80708 Pacsin3 acguucggaaccCACACCCUCc | ||||||| ugggucaucccaGAGUGGGAGg 2 11 219 240 [mm9:2:91104682-91104703:+] 0.5657 142 7 -23.91 -0.3659 MIMAT0003167 mmu-miR-540-3p 80708 Pacsin3 ggUCC-UAGCUGGAGACUGGa ||| :|| :|||||||| caAGGCGUC--UCUCUGACCu 2 19 19 37 [mm9:2:91104482-91104500:+] 0.5310 150 7 -23.43 -0.2607 MIMAT0003189 mmu-miR-291b-5p 80708 Pacsin3 ccUCUCCCGGAGGUGAAACUAg || | || |: | |||||| guAGUGUGCAUUAAAUUUGAUu 2 21 327 348 [mm9:2:91104790-91104811:+] 0.5379 132 6 -10.31 -0.1319 MIMAT0003510 mmu-miR-717 80708 Pacsin3 ucUCUUCCAUAGAGACAGA-CUc :| ||| :||| ||||| || agGGCAGGGGUCUGUGUCUAGAg 2 21 141 163 [mm9:2:91104604-91104626:+] 0.5574 132 0 -25.69 -0.3729 MIMAT0004845 mmu-miR-881* 80708 Pacsin3 ucUACAC--UGACAAUAGAGAGAc ||||| :||| |:||||||| ccAUGUGCUGCUGCUGUCUCUCUu 2 21 86 109 [mm9:2:91104549-91104572:+] 0.4987 171 7 -22.11 -0.2594 MIMAT0004845 mmu-miR-881* 80708 Pacsin3 ucuacacugacaaUAGAGAGAc :||||||| gcccuaccaaggcGUCUCUCUg 2 10 12 33 [mm9:2:91104475-91104496:+] 0.5255 141 7 -16.49 -0.2723 MIMAT0007872 mmu-miR-1906 80708 Pacsin3 ucGGGAC--GGAGUCCGACGACGu ||||| || :: |||||||| ggCCCUGAACCAUGUGCUGCUGCu 2 21 77 100 [mm9:2:91104540-91104563:+] 0.4987 163 7 -29.85 -0.2759 MIMAT0007876 mmu-miR-1907 80708 Pacsin3 uggaGGUCUAGG-AGACGACGAg || || || | ||||||| aggcCCUGAACCAUGUGCUGCUg 2 19 76 98 [mm9:2:91104539-91104561:+] 0.5176 157 7 -19.29 -0.1923 MIMAT0007877 mmu-miR-1894-5p 80708 Pacsin3 ucuCCGUCCACCAUCCCCUCUc || : | ||| ||||||| ccuGGGGUGAGGUUGGGGAGAa 2 20 268 289 [mm9:2:91104731-91104752:+] 0.5657 159 7 -24.80 -0.9058 MIMAT0009393 mmu-miR-1930 80708 Pacsin3 ugCGACGUCCA----UGAUACCUCCa |:|| |||| |: ||||||| gaGUUGGAGGUUGGAAUGAUGGAGGg 2 21 161 186 [mm9:2:91104624-91104649:+] 0.5657 155 7 -23.54 -0.1860 MIMAT0009398 mmu-miR-1934 80708 Pacsin3 ucuccuGCUUCGUCC-CCU-GGUCu | :||::|| ||| |||| ucauccCAGAGUGGGAGGAUCCAGc 2 18 223 247 [mm9:2:91104686-91104710:+] 0.5657 120 0 -18.22 -0.3883 MIMAT0009428 mmu-miR-1956 80708 Pacsin3 aggCGACUGAGUCGGGACCUGa ||| | | :||||||| agaGCUUAACCCUUCCUGGACu 2 20 43 64 [mm9:2:91104506-91104527:+] 0.5365 151 7 -20.77 -0.3721 MIMAT0009445 mmu-miR-1274a 80708 Pacsin3 accgcGGACUUGUC--CCUGGACu ||||:|| | ||||||| cccuuCCUGGACUGCUGGACCUGa 2 18 52 75 [mm9:2:91104515-91104538:+] 0.5365 160 7 -27.43 -0.5004 MIMAT0009460 mmu-miR-1982.1 80708 Pacsin3 gacACCCUCUUGUAUCCCACUCu | |||| | |:||||||| guuUAGGAGUUCCUGGGGUGAGg 2 21 257 279 [mm9:2:91104720-91104742:+] 0.5657 164 7 -26.46 -0.2809 MIMAT0009460 mmu-miR-1982.1 80708 Pacsin3 gacACCCUCUUGUAUCCCA-CUCu ||| | :|:: ||||| ||| gguUGGAAUGAUGGAGGGUCGAGa 2 21 169 192 [mm9:2:91104632-91104655:+] 0.5657 128 0 -19.25 -0.3360 MIMAT0000124 mmu-miR-15b 80708 Pacsin3 acAUUUGGUACUAC-ACGACGAu |:||||||| || ||||||| ccUGAACCAUG-UGCUGCUGCUg 2 21 80 101 [mm9:2:91104543-91104564:+] 0.4987 173 7 -26.17 -0.1785 MIMAT0000165 mmu-miR-155 80708 Pacsin3 uggggauAGUGUUAAUCGUAAUu |:::|:| |||||| uugugacUUGUAGUGUGCAUUAa 2 17 318 340 [mm9:2:91104781-91104803:+] 0.5657 124 6 -10.33 -0.1192 MIMAT0000225 mmu-miR-195 80708 Pacsin3 cgguuauaaagACACGACGAu ||||||||| gcccugaaccaUGUGCUGCUg 2 11 78 98 [mm9:2:91104541-91104561:+] 0.4987 150 7 -20.04 -0.1787 MIMAT0000366 mmu-miR-290-5p 80708 Pacsin3 uuucacggggGUAUCAAACUCa ::||||||||| uuggggagaaUGUAGUUUGAGg 2 13 280 301 [mm9:2:91104743-91104764:+] 0.5657 152 7 -13.50 -0.6117 MIMAT0000369 mmu-miR-292-5p 80708 Pacsin3 guUUUCUCGGGGGUCAAACUCa :::||| : :|||||||| uuGGGGAGAAUGUAGUUUGAGg 2 21 280 301 [mm9:2:91104743-91104764:+] 0.5657 156 7 -20.89 -0.5970 MIMAT0000526 mmu-miR-15a 80708 Pacsin3 guGUUUGGUAAUAC-ACGACGAu ::||||| |:|| ||||||| ccUGAACCA-UGUGCUGCUGCUg 2 21 80 101 [mm9:2:91104543-91104564:+] 0.4987 165 7 -23.44 -0.1802 MIMAT0000527 mmu-miR-16 80708 Pacsin3 gcgguuauaaaUGCACGACGAu |:|||||||| ggcccugaaccAUGUGCUGCUg 2 12 77 98 [mm9:2:91104540-91104561:+] 0.4987 151 7 -22.01 -0.1787 MIMAT0000528 mmu-miR-18a 80708 Pacsin3 gaUAGAC-GUGAUCUACGUGGAAu :|:|| :||:| ||||||| uaGUUUGAGGCUGGCAGCACCUUc 2 22 292 315 [mm9:2:91104755-91104778:+] 0.5657 156 7 -19.44 -0.5455 MIMAT0000548 mmu-miR-322 80708 Pacsin3 agGUUUUGUACUUAACGACGAc ::|| |||| : ||||||| ccUGAACCAUGUGCUGCUGCUg 2 21 80 101 [mm9:2:91104543-91104564:+] 0.4987 164 7 -21.62 -0.1819 MIMAT0000559 mmu-miR-326 80708 Pacsin3 ugaccuccuucccGGGUCUCc ||||||| acauuugggucauCCCAGAGu 2 9 214 234 [mm9:2:91104677-91104697:+] 0.5657 140 7 -16.86 -0.2579 MIMAT0004642 mmu-miR-330 80708 Pacsin3 cgGAUUCUGUGUCCGGGUCUCu :|::| ||: ||||||| auUUGGGUCAU---CCCAGAGu 2 21 216 234 [mm9:2:91104679-91104697:+] 0.5657 144 7 -19.30 -0.2364 MIMAT0000653 mmu-miR-28 80708 Pacsin3 gagUUAUCUGAC-A-CUCGAGGAa |:|:|: | | ||||||| cagAGUGGGAGGAUCCAGCUCCUa 2 20 229 252 [mm9:2:91104692-91104715:+] 0.5657 141 7 -17.06 -0.3457 MIMAT0000671 mmu-miR-224 80708 Pacsin3 uugccuuGGUGAUCACUGAAu :| :| ||||||| agcaccuUCUUUUGUGACUUg 2 15 307 327 [mm9:2:91104770-91104790:+] 0.5657 146 7 -15.40 -0.8869 MIMAT0003453 mmu-miR-497 80708 Pacsin3 auGUUUGGUGUCAC-ACGACGAc ::|||||: ||| ||||||| ccUGAACCAU-GUGCUGCUGCUg 2 21 80 101 [mm9:2:91104543-91104564:+] 0.4987 165 7 -27.20 -0.1837 MIMAT0004828 mmu-miR-708 80708 Pacsin3 gggUCGAUCUAACA-UUCGAGGAa ||: :|| | ||||||| cagAGUGGGAGGAUCCAGCUCCUa 2 21 229 252 [mm9:2:91104692-91104715:+] 0.5657 143 7 -16.79 -0.3429 MIMAT0004858 mmu-miR-18b 80708 Pacsin3 gauugUCGUGAUCUACGUGGAAu || :||:| ||||||| guuugAG-GCUGGCAGCACCUUc 2 19 294 315 [mm9:2:91104757-91104778:+] 0.5657 152 7 -16.02 -0.5455 MIMAT0004936 mmu-miR-873 80708 Pacsin3 uccucUGAGUGUUCAAGGACg ::|:| :|||||||| aaacuGUUUAGGAGUUCCUGg 2 17 252 272 [mm9:2:91104715-91104735:+] 0.5657 156 7 -17.53 -0.2955

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G006526 Pacsin3 Mus musculus 80708

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Pacsin3 mmu-miR-3470b beg:218 end:236 pic:3' GGTCGGACCAGAT--GTCTCACT 5'& |||| |||||||. &5' -------GGTCATCCCAGAGTGG 3' Pacsin3 mghv-miR-M1-4 beg:193 end:212 pic:3' ATCTTATTGTGCAC-GAGGAGCT 5'& .| || | |||||||. &5' -------GCCCGAGCCTCCTCGG 3' Pacsin3 mmu-miR-151-5p beg:197 end:212 pic:3' TGATCTGACACTC-GAGGAGCT 5'& ||| |||||||. &5' ----------GAGCCTCCTCGG 3' Pacsin3 mmu-miR-218-2star beg:74 end:91 pic:3' GCGCCACGAACTGT--CTTGGTAC 5'& |.| |||||||| &5' ----------GGCCCTGAACCATG 3' Pacsin3 mghv-miR-M1-2 beg:136 end:155 pic:3' TTTCTCCCCCTCTCCCCCAGAC 5'& || ||| |||||||| &5' ---GAAGGGCA---GGGGTCTG 3' Pacsin3 mmu-miR-532-3p beg:230 end:241 pic:3' ACGTTCGGAACCCACACCCTCC 5'& |||||||| &5' --------------GTGGGAGG 3' Pacsin3 mmu-miR-873 beg:255 end:272 pic:3' TCCTCTGAGTGTTCAAGGACG 5'& .|.| .|||||||| &5' ------TTTAGGAGTTCCTG- 3' Pacsin3 mmu-miR-290-5p beg:282 end:301 pic:3' TTTCACGGGGGTATCAAACTCA 5'& | ..||||||||| &5' -----GAGAATGTAGTTTGAG- 3' Pacsin3 mmu-miR-293star beg:283 end:301 pic:3' GTTTTACAGTGTGTCAAACTCA 5'& |.||||| |||||||| &5' -AGAATGT-----AGTTTGAG- 3' Pacsin3 mmu-miR-106bstar beg:317 end:335 pic:3' CGTCGTTCA-TGGGTGTCACGCC 5'& || ||. .||||.| &5' -------GTGACTTGTAGTGTG- 3' Pacsin3 mmu-miR-107 beg:75 end:98 pic:3' ACTATCGGGACATGT--TACGACGA 5'& .|||||| || .||||||| &5' ----GGCCCTGAACCATGTGCTGCT 3' Pacsin3 mmu-miR-125a-5p beg:112 end:133 pic:3' AGTGTCCAATTTCC--CAGAGTCCCT 5'& |||||| ||| ||||||||| &5' -CACAGG----AGGAAGTCTCAGGG- 3' Pacsin3 mmu-miR-125b-5p beg:113 end:133 pic:3' AGTGTTCAATCC--CAGAGTCCCT 5'& ||||.| ||| ||||||||| &5' -CACAGG--AGGAAGTCTCAGGG- 3' Pacsin3 mmu-miR-125bstar beg:308 end:329 pic:3' TCCAGGGTTCTTGGACTGAACA 5'& ||. . |||||||| &5' ----CCTTCTTTTGTGACTTGT 3' Pacsin3 mmu-miR-1274a beg:54 end:76 pic:3' ACCGCGGACTTGTC--CCTGGACT 5'& ||||.|| |||||||| &5' -----CCTGGACTGCTGGACCTGA 3' Pacsin3 mmu-miR-145 beg:258 end:285 pic:3' TCCCTAAGGACCC--TTTTGACCTG 5'& ||| |||||||| .| .|||. &5' AGGAGTTCCTGGGGTGAGGTTGGG- 3' Pacsin3 mmu-miR-146bstar beg:260 end:276 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& ||||.|||.|||. &5' ---------GAGTTCCTGGGGT 3' Pacsin3 mmu-miR-15a beg:80 end:102 pic:3' GTGTTTGGTAATAC-ACGACGAT 5'& .||||| |.|| |||||||. &5' ---GAACCA-TGTGCTGCTGCTG 3' Pacsin3 mmu-miR-15b beg:79 end:102 pic:3' ACATTTGGTACTAC-ACGACGAT 5'& |.||||||| || |||||||. &5' --TGAACCATG-TGCTGCTGCTG 3' Pacsin3 mmu-miR-16 beg:85 end:99 pic:3' GCGGTTATAAATGCACGACGAT 5'& |.||||||||. &5' -----------ATGTGCTGCTG 3' Pacsin3 mmu-miR-185 beg:89 end:108 pic:3' AGTCCTTGACGGAA--AGAGAGGT 5'& .||||. ||||||. &5' ------GCTGCTGCTGTCTCTCT- 3' Pacsin3 mmu-miR-1894-5p beg:269 end:289 pic:3' TCTCCG-TCCACCATCCCCTCTC 5'& |.||. |||| ||||||| &5' -GGGGTGAGGTT---GGGGAGA- 3' Pacsin3 mmu-miR-18a beg:292 end:315 pic:3' GATAGACG-TGATCTACGTGGAAT 5'& .|.|| .||.| ||||||| &5' --GTTTGAGGCTGGCAGCACCTT- 3' Pacsin3 mmu-miR-18astar beg:127 end:148 pic:3' GTCTTCCTCGTGAATCCCGTCA 5'& |.|| ||. ||||||| &5' ---AGGGCCCATGAAGGGCAG- 3' Pacsin3 mmu-miR-1902 beg:298 end:315 pic:3' TTCAGTACGGATGACGTGGAGA 5'& ||. .| ||||||. &5' -------GCTGGCAGCACCTT- 3' Pacsin3 mmu-miR-1906 beg:78 end:100 pic:3' TCGGGACGGAGT-C-CGACGACGT 5'& ||||| || | |||||||| &5' --CCCTGAACCATGTGCTGCTGC- 3' Pacsin3 mmu-miR-1930 beg:160 end:186 pic:3' TGCGACGTCCATGA----TACCTCCA 5'& |.|| |||| ||||||| &5' --GTTGGAGGTTGGAATGATGGAGG- 3' Pacsin3 mmu-miR-193star beg:61 end:82 pic:3' AGTAGAACGGGCG---TTTCTGGGT 5'& |||. | .|||.||| &5' ------TGCTGGACCTGAAGGCCC- 3' Pacsin3 mmu-miR-1941-5p beg:87 end:108 pic:3' TTCGGAGACATGGT--CG-TAGAGGGA 5'& |||.|. || .||||.|| &5' -------TGTGCTGCTGCTGTCTCTCT 3' Pacsin3 mmu-miR-195 beg:83 end:99 pic:3' CGGTTATAAAGACACGACGAT 5'& ||| |||||||||. &5' -CCA-------TGTGCTGCTG 3' Pacsin3 mmu-miR-1956 beg:20 end:42 pic:3' AGGCGACT-GAGTCGGGACCTGA 5'& || ||| |||||.| &5' ---GCGTCTCTCTGACCTGGGC- 3' Pacsin3 mmu-miR-1982.1 beg:259 end:280 pic:3' GACACCCTCTTGTATCCCACTCT 5'& |||| | |.|||||||. &5' -----GGAGTTCCTGGGGTGAGG 3' Pacsin3 mmu-miR-1982.1 beg:278 end:302 pic:3' GACACCCTCTTGTATCCCACTCT 5'& || |||||||..||| ||||. &5' -TG-GGGAGAATGTAGTTTGAGG 3' Pacsin3 mmu-miR-1982.2 beg:278 end:300 pic:3' GACACCCTCTTGTATCCCACT 5'& || |||||||..||| ||| &5' -TG-GGGAGAATGTAGTTTGA 3' Pacsin3 mmu-miR-199a-3p beg:57 end:69 pic:3' ATTGGTTACACGTCTGATGACA 5'& .||||.||| &5' ------------GGACTGCTG- 3' Pacsin3 mmu-miR-205 beg:124 end:144 pic:3' GTCTGAGGCCACCTTACTTCCT 5'& | ||| || |||||||. &5' --GTCTCAGGGCCCATGAAGGG 3' Pacsin3 mmu-miR-20astar beg:276 end:296 pic:3' GAAATTCACGAGCA---TTACGTCA 5'& |.| | ||||.||| &5' --------GTTGGGGAGAATGTAGT 3' Pacsin3 mmu-miR-221 beg:279 end:297 pic:3' CTTTGGGTCGTCTGTTACATCGA 5'& | .|| |||||||.| &5' --------GGGGAGAATGTAGTT 3' Pacsin3 mmu-miR-222 beg:275 end:297 pic:3' TGGGTCATCGGTC-----TACATCGA 5'& .|. | ||||||.| &5' -------GGTTGGGGAGAATGTAGTT 3' Pacsin3 mmu-miR-224 beg:307 end:328 pic:3' TTGCCTTGGT-GAT--CACTGAAT 5'& ||| || |||||||. &5' ------ACCTTCTTTTGTGACTTG 3' Pacsin3 mmu-miR-23a beg:259 end:278 pic:3' CCTTTAGGGACCGTTACACTA 5'& |.|.|.||||| |||| &5' -GGAGTTCCTGGG---GTGA- 3' Pacsin3 mmu-miR-23b beg:259 end:278 pic:3' CCATTAGGGACCGTTACACTA 5'& || |.|.||||| |||| &5' GG-AGTTCCTGGG---GTGA- 3' Pacsin3 mmu-miR-24 beg:22 end:44 pic:3' GACAAGGACGACTTGACTCGGT 5'& || || |||| |||.|||| &5' --GTCTCT-CTGACCTGGGCCA 3' Pacsin3 mmu-miR-295star beg:281 end:301 pic:3' CTTCACACGGGGTGTAAACTCA 5'& |.|| ||. .|||||| &5' GGAGAATGTA----GTTTGAG- 3' Pacsin3 mmu-miR-296-3p beg:0 end:17 pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& | ||| |.. ||.|||| &5' ---GTGCC-CTGA-CAGCCCT- 3' Pacsin3 mmu-miR-3099star beg:268 end:306 pic:3' GTTCCCGA------CCTTC----------CTTCGACC 5'& .|||. ||.|| ||.||||| &5' --GGGGTGAGGTTGGGGAGAATGTAGTTTGAGGCTGG 3' Pacsin3 mmu-miR-30bstar beg:207 end:232 pic:3' CTGCATTTGTAGGT---GTAGGGTC 5'& || |||||.. |||||||| &5' --CGGGAACATTTGGGTCATCCCAG 3' Pacsin3 mmu-miR-322 beg:80 end:102 pic:3' AGGTTTTGTACTTAACGACGAC 5'& | || |||| |||||||| &5' -CTGAACCATGTGCTGCTGCTG 3' Pacsin3 mmu-miR-323-3p beg:318 end:335 pic:3' TCTCCAGCTGGCACATTACAC 5'& .|||. ||||.|||| &5' ------TGACT-TGTAGTGTG 3' Pacsin3 mmu-miR-331-3p beg:266 end:286 pic:3' AAGATCCTA-TCCGGGTCCCCG 5'& ||.||.| |||. |||| &5' --CTGGGGTGAGGTT--GGGG- 3' Pacsin3 mmu-miR-331-5p beg:259 end:284 pic:3' CCT-AGGGACCCTGGTATGGATC 5'& ||| |.||||||. | .|.| &5' GGAGTTCCTGGGGTGAGG-TTGG 3' Pacsin3 mmu-miR-338-3p beg:53 end:71 pic:3' GTTGTTTTAGTGACT--ACGACCT 5'& || |||. ||||||| &5' --------TC-CTGGACTGCTGGA 3' Pacsin3 mmu-miR-339-5p beg:130 end:151 pic:3' GCACTCGAGG-ACCTCCTGTCCCT 5'& |.|| || || |||.|||||. &5' ---GGGC-CCATGAAGGGCAGGGG 3' Pacsin3 mmu-miR-33star beg:199 end:219 pic:3' CACTACGTGACA--CCTTTGTAAC 5'& || || || ||.|||||| &5' --GA-GC-CTCCTCGGGAACATT- 3' Pacsin3 mmu-miR-342-5p beg:293 end:315 pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& | | .| | ||||||.. &5' -TTGAG-GCTGGCAGCACCTT- 3' Pacsin3 mmu-miR-3473 beg:89 end:108 pic:3' CCGACT-CGGTAGAGAGGT 5'& |||| ||..||||||. &5' -GCTGCTGCTGTCTCTCT- 3' Pacsin3 mmu-miR-351 beg:113 end:133 pic:3' GTCCGAGTTTCCCGAGGAGTCCCT 5'& |||| ||| .||||||| &5' CAGG-----AGGAAGTCTCAGGG- 3' Pacsin3 mmu-miR-423-5p beg:89 end:108 pic:3' TTTCAGAGCGA-GA-GACGGGGAGT 5'& .||| || |||.|.||| &5' -------TGCTGCTGCTGTCTCTC- 3' Pacsin3 mmu-miR-448 beg:316 end:337 pic:3' TACCCTGTAGGATGTATACGTT 5'& || ||| |. || .|.|||| &5' -TGTGAC-TTGTA-GTGTGCA- 3' Pacsin3 mmu-miR-497 beg:80 end:102 pic:3' ATGTTTGGTGTCAC-ACGACGAC 5'& .|||||. ||| |||||||| &5' ---GAACCAT-GTGCTGCTGCTG 3' Pacsin3 mmu-miR-503 beg:78 end:102 pic:3' GACGTCATGACAAGGGCGACGAT 5'& ||| ||| |.||||||. &5' CTGAACCA-TGTG-CTGCTGCTG 3' Pacsin3 mmu-miR-540-3p beg:15 end:38 pic:3' GGTCCTAGCTG-GAGACTGGA 5'& ||| |. || | ||||||||| &5' CCAAGG-CGTCTCTCTGACCT 3' Pacsin3 mmu-miR-542-5p beg:66 end:85 pic:3' AGCACTGTACTACTAGGGGCTC 5'& ||| ||| |. |||.|| &5' ----GACCTGAAGG-CCCTGA- 3' Pacsin3 mmu-miR-615-3p beg:228 end:250 pic:3' TTCTCCCT-CTGGGTCCGAGCCT 5'& .|| |||| ||.||| |||| &5' GAGTGGGAGGATCCA-GCTC--- 3' Pacsin3 mmu-miR-665 beg:41 end:62 pic:3' TCCCTGGAGTC--GGAGGACCA 5'& || ||.| |.|||||| &5' ---GAGCTTAACCCTTCCTGG- 3' Pacsin3 mmu-miR-676 beg:42 end:64 pic:3' TCGAGTTGTTGGAGT-CCTGCC 5'& ||||.||| |.|| |||| &5' AGCTTAACC-CTTCCTGGAC-- 3' Pacsin3 mmu-miR-681 beg:261 end:283 pic:3' TCGACGGACGGTCGCTCCGAC 5'& ||.| |||| .|.||||.|| &5' AGTT-CCTGG-GGTGAGGTTG 3' Pacsin3 mmu-miR-684 beg:272 end:291 pic:3' AACTGAACTTCCCTTTTGA 5'& ||| .||||.||. &5' -TGAGGTT-GGGGAGAAT- 3' Pacsin3 mmu-miR-712star beg:303 end:330 pic:3' GTTGTGGGCCCC--CACTGAGCGT 5'& ||.||||. ||||||.|.| &5' CAGCACCTTCTTTTGTGACTTGTA 3' Pacsin3 mmu-miR-741 beg:90 end:108 pic:3' AGATGTATCTTACCG-TAGAGAGT 5'& ||.| || .|||||| &5' -CTGCT-------GCTGTCTCTC- 3' Pacsin3 mmu-miR-741 beg:12 end:32 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& |||| |||.|||||| &5' -CTACCAA----GGCGTCTCTC- 3' Pacsin3 mmu-miR-744star beg:290 end:311 pic:3' TCCAACTCCAATCACCGTTGTC 5'& || |||||| |||||.|| &5' AGTTTGAGGC---TGGCAGCA- 3' Pacsin3 mmu-miR-760 beg:107 end:136 pic:3' AGGGGTGTCT-------GGGTCTCGGC 5'& |.|||||||. |.|||.||| &5' TTCCCACAGGAGGAAGTCTCAGGGCC- 3' Pacsin3 mmu-miR-760 beg:27 end:49 pic:3' AGGGG-TGT-CTGGGTCTCGGC 5'& ||.|. || |. |||||||. &5' TCTCTGACCTGGGCCAGAGCT- 3' Pacsin3 mmu-miR-877 beg:90 end:108 pic:3' GGGACG-CGGTAGAG-GAGATG 5'& |||| ||..|||| ||. &5' --CTGCTGCTGTCTCTCTT--- 3' Pacsin3 mmu-miR-881star beg:19 end:34 pic:3' TCTACACTGACAATAGAGAGAC 5'& | .|||||||| &5' ----------GGCGTCTCTCTG 3' Pacsin3 mmu-miR-881star beg:86 end:108 pic:3' TCTACAC--TGACAATAGAGAGAC 5'& ||||| .||| |.||||||| &5' --ATGTGCTGCTGCTGTCTCTCT- 3' Pacsin3 mmu-miR-883b-3p beg:280 end:297 pic:3' TATGACTCTCTACAACGTCAAT 5'& |.|||| ||.|||| &5' -----GGGAGAA--TGTAGTT- 3' Pacsin3 mmu-miR-455 beg:49 end:67 pic:3' CACATATACGGGC---ACCTGACG 5'& ||| |||||||| &5' ---------CCCTTCCTGGACTGC 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pacsin3 RAID00037178 mmu-miR-322-5p miRNA MIMAT0000548 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID01168169 mmu-miR-16-5p miRNA MIMAT0000527 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID01219360 mmu-miR-1956 miRNA MIMAT0009428 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID01540405 mmu-miR-290a-5p miRNA MIMAT0000366 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID01573814 mmu-miR-6953-3p miRNA MIMAT0027807 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID01579871 mmu-miR-18b-5p miRNA MIMAT0004858 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID01874537 mmu-miR-18a-5p miRNA MIMAT0000528 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID02168141 mmu-miR-7052-5p miRNA MIMAT0028008 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID02410464 mmu-miR-195a-5p miRNA MIMAT0000225 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID03041396 mmu-miR-330-5p miRNA MIMAT0004642 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID03080036 mmu-miR-224-5p miRNA MIMAT0000671 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID03081708 mmu-miR-497a-5p miRNA MIMAT0003453 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID03339118 mmu-miR-350-3p miRNA MIMAT0000605 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID03393220 mmu-miR-292a-5p miRNA MIMAT0000369 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID03457185 mmu-miR-5621-3p miRNA MIMAT0022370 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID03483875 mmu-miR-873a-5p miRNA MIMAT0004936 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID03532151 mmu-miR-28a-5p miRNA MIMAT0000653 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID03554589 mmu-miR-326-3p miRNA MIMAT0000559 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID03709900 mmu-miR-15a-5p miRNA MIMAT0000526 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID03904023 mmu-miR-155-5p miRNA MIMAT0000165 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID04024724 mmu-miR-15b-5p miRNA MIMAT0000124 Pacsin3 mRNA 80708 Prediction 0.1828 Pacsin3 RAID04053956 mmu-miR-708-5p miRNA MIMAT0004828 Pacsin3 mRNA 80708 Prediction 0.1828