DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000154 mmu-miR-142-5p 386649 Nsfl1c ucaucacgaaagaUGAAAUac |||||| ugaugaucaauggACUUUAaa 3 9 181 201 [mm9:2:151336986-151337006:+] 0.6491 120 0 -5.61 -0.2032 MIMAT0004575 mmu-miR-295* 386649 Nsfl1c cuucacacggggUGUAAACUca | |||||| uaaaaaacacaaAAAUUUGAag 3 11 212 233 [mm9:2:151337017-151337038:+] 0.6491 122 0 -7.39 -0.4014 MIMAT0004616 mmu-miR-30c-1* 386649 Nsfl1c ccucauuuGUUGGGAGAGGGUc :|| : ||||||| caccucccUAAGUGUCUCCCAu 2 15 18 39 [mm9:2:151336823-151336844:+] 0.6950 146 7 -15.67 -0.5539 MIMAT0005438 mmu-miR-30c-2* 386649 Nsfl1c ucucauuugucggaAGAGGGUc ||||||| caccucccuaagugUCUCCCAu 2 9 18 39 [mm9:2:151336823-151336844:+] 0.6950 140 7 -13.11 -0.5503 MIMAT0004618 mmu-miR-196a* 386649 Nsfl1c aguccgucaaagaACAACGGcu ||||||| ----ccgcccagcUGUUGCCuc 3 10 1 18 [mm9:2:151336806-151336823:+] 0.7409 125 0 -11.02 -0.1010 MIMAT0004629 mmu-miR-22* 386649 Nsfl1c auuucgaacgguGACUUCUUga :||||||| aaacacaaaaauUUGAAGAA-- 3 11 216 235 [mm9:2:151337021-151337040:+] 0.6491 126 0 -6.86 -0.7479 MIMAT0000605 mmu-miR-350 386649 Nsfl1c cuuucacauACCC-GAAACACUu |||| :||||||| uguauuuccUGGGUUUUUGUGAu 2 14 162 184 [mm9:2:151336967-151336989:+] 0.6491 152 7 -15.55 -1.0829 MIMAT0004670 mmu-miR-7a* 386649 Nsfl1c auaccGUCUGACACUAAACAAc ||| : | ||||||| gacuuCAGUUGGACAUUUGUUu 2 18 130 151 [mm9:2:151336935-151336956:+] 0.6491 149 7 -10.00 -0.7849 MIMAT0004704 mmu-miR-335-3p 386649 Nsfl1c ccagUCCUCGUUAUUACUUUUu || | || ||| |||| uuaaAGAAAAAAAAAUAAAAAa 2 19 197 218 [mm9:2:151337002-151337023:+] 0.6491 126 0 -2.67 -0.1799 MIMAT0003373 mmu-miR-302b* 386649 Nsfl1c ucuuucguaaggguacAAUUUCa |||||| ugaugaucaauggacuUUAAAGa 2 8 181 203 [mm9:2:151336986-151337008:+] 0.6491 120 6 -5.18 -0.2495 MIMAT0003375 mmu-miR-302c* 386649 Nsfl1c cguccauugggguacAAUUUCg |||||| gaugaucaauggacuUUAAAGa 2 8 182 203 [mm9:2:151336987-151337008:+] 0.6491 120 6 -8.27 -0.2517 MIMAT0003733 mmu-miR-665 386649 Nsfl1c ucccuggagucGGAGGACCa ::|||||| cuuuaguuguaUUUCCUGGg 2 10 155 174 [mm9:2:151336960-151336979:+] 0.6491 125 6 -15.86 -0.3402 MIMAT0003896 mmu-miR-763 386649 Nsfl1c cggugaccaagaaGGGUCGACc |||||||| ----------ccgCCCAGCUGu 2 10 1 12 [mm9:2:151336806-151336817:+] 0.7409 145 7 -16.50 -1.1584 MIMAT0003477 mmu-miR-669a 386649 Nsfl1c uguacUUGUA-CGUGUGUGUUga || || | |||||| aaaaaAAAAUAAAAAACACAAaa 3 18 203 225 [mm9:2:151337008-151337030:+] 0.6491 124 0 -7.72 -1.0473 MIMAT0003476 mmu-miR-669b 386649 Nsfl1c uguacguguacgUGUGUUUUga |||||||| aaaaaauaaaaaACACAAAAau 3 11 206 227 [mm9:2:151337011-151337032:+] 0.6491 130 0 -9.58 -0.1234 MIMAT0003742 mmu-miR-455 386649 Nsfl1c cacAUA-UAC-GGGCACCUGAcg |:| ||| :| |||||| uuuUGUGAUGAUCAAUGGACUuu 3 19 176 198 [mm9:2:151336981-151337003:+] 0.6491 128 0 -14.09 -0.1818 MIMAT0003496 mmu-miR-706 386649 Nsfl1c aaaAAACUCUGUCCCAAAGAGa || || |: | |||||| cagUUGGACAUUUGUUUUCUCu 2 20 135 156 [mm9:2:151336940-151336961:+] 0.6491 127 6 -13.02 -0.1344 MIMAT0003497 mmu-miR-707 386649 Nsfl1c gcAUCCGUUCGCCGUACUGAc || |:: : ||||||| ccUAAGUGUCUCCCAUGACUg 2 20 24 44 [mm9:2:151336829-151336849:+] 0.6491 143 7 -17.52 -0.2214 MIMAT0003499 mmu-miR-709 386649 Nsfl1c aggaGGACGGAGACGGAGg || ||: :|||||| ccgcCCAGCUGUUGCCUCa 2 16 1 19 [mm9:2:151336806-151336824:+] 0.7409 139 6 -19.52 -0.1683 MIMAT0005833 mmu-miR-669d 386649 Nsfl1c ugUAUAUGUACGUGUGUGUUca | ||| | | |||||| aaAAAUAAA---AAACACAAaa 3 21 207 225 [mm9:2:151337012-151337030:+] 0.6491 124 0 -5.70 -1.0499 MIMAT0005859 mmu-miR-1198 386649 Nsfl1c gguucggucgguccUUGUGUau |||||| aaaaaaaaauaaaaAACACAaa 3 9 203 224 [mm9:2:151337008-151337029:+] 0.6491 120 0 -6.20 -1.1010 MIMAT0007863 mmu-miR-1902 386649 Nsfl1c uucaguacggaugacGUGGAGa |||||| gcccagcuguugccuCACCUCc 2 8 3 24 [mm9:2:151336808-151336829:+] 0.6950 120 6 -16.14 -0.1015 MIMAT0007868 mmu-miR-1903 386649 Nsfl1c acaGAGUCCUUCUUCUUCUUcc | || || |||||| aaaCACAAAAAUUUGAAGAA-- 3 20 216 235 [mm9:2:151337021-151337040:+] 0.6491 127 0 -4.73 -0.7294 MIMAT0009396 mmu-miR-1933-5p 386649 Nsfl1c uuuGAUUCUGGCUUGUGGUACUGa ||||| :| : ||||||| uccCUAAG--UGUCUCCCAUGACu 2 22 22 43 [mm9:2:151336827-151336848:+] 0.6491 150 7 -18.94 -0.3752 MIMAT0009400 mmu-miR-1936 386649 Nsfl1c cggucAAGUGUCGUCCAGUCAAu ||| :|| | |||||| cuggaUUCUUAG-ACUUCAGUUg 2 19 119 140 [mm9:2:151336924-151336945:+] 0.6491 124 6 -14.87 -0.1099 MIMAT0009402 mmu-miR-1938 386649 Nsfl1c cuggCUUGAUGUUCAGGGUGGc |:|:| | ||||||| guggGGAUUUC--CUCCCACCc 2 19 56 75 [mm9:2:151336861-151336880:+] 0.6491 143 7 -15.56 -0.2080 MIMAT0009408 mmu-miR-1943 386649 Nsfl1c agGUCCACG--GGUCUAGGAGGGAa ||| ||: || | ||||||| ccCAGCUGUUGCCUCA-CCUCCCUa 2 22 4 27 [mm9:2:151336809-151336832:+] 0.6950 150 7 -25.21 -1.1768 MIMAT0009413 mmu-miR-1947 386649 Nsfl1c gucgugagucgaucGAGCAGGa ||||||| uuccagugccacguCUCGUCCg 2 9 92 113 [mm9:2:151336897-151336918:+] 0.6491 140 7 -19.61 -0.5977 MIMAT0009418 mmu-miR-669l 386649 Nsfl1c ugUAUAUGUACGUGUGUGUUga | ||| | | |||||| aaAAAUAAA---AAACACAAaa 3 21 207 225 [mm9:2:151337012-151337030:+] 0.6491 124 0 -6.86 -1.0499 MIMAT0009427 mmu-miR-669n 386649 Nsfl1c uguguguaggUGUGUGUUUa | ||||||| aaaaaauaaaAAACACAAAa 2 11 206 225 [mm9:2:151337011-151337030:+] 0.6491 142 7 -6.33 -1.3616 MIMAT0009439 mmu-miR-1966 386649 Nsfl1c cugagaGAGGACUCGGUCGAGGGAa || :|| :|| |||||| gcccagCUGUUGCCUCACCUCCCUa 2 20 3 27 [mm9:2:151336808-151336832:+] 0.6950 131 6 -19.62 -0.1129 MIMAT0009459 mmu-miR-1982* 386649 Nsfl1c ggaggggUCCU--GGGAGGGUu :||| :||||||| gcccgugGGGAUUUCCUCCCAc 2 14 52 73 [mm9:2:151336857-151336878:+] 0.6491 144 7 -25.03 -0.2347 MIMAT0011217 mmu-miR-2141 386649 Nsfl1c uuGAAAAGACUGUGGAGGa || || ||||||| agCUGUUGCCUCACCUCCc 2 18 7 25 [mm9:2:151336812-151336830:+] 0.6950 145 7 -17.98 -1.1039 MIMAT0000148 mmu-miR-136 386649 Nsfl1c gguAGUAGUUUUGUUUACCUca |::| | :|: |||||| uuuUUGUGAUGAUCAAUGGAcu 3 20 175 196 [mm9:2:151336980-151337001:+] 0.6491 135 0 -6.78 -0.1434 MIMAT0000209 mmu-miR-129-5p 386649 Nsfl1c cguucgggucuggcGUUUUUc |||||| aaaaauaaaaaacaCAAAAAu 2 8 207 227 [mm9:2:151337012-151337032:+] 0.6491 120 6 -2.77 -0.1532 MIMAT0000224 mmu-miR-194 386649 Nsfl1c agguguaccucaaCGACAAUGu ||||||:| ------ccgcccaGCUGUUGCc 2 10 1 16 [mm9:2:151336806-151336821:+] 0.7409 129 0 -12.48 -0.1153 MIMAT0000386 mmu-miR-106b 386649 Nsfl1c uaGACGUGAC-AGU--CGUGAAAu :||:: || ||| | ||||| uuUUGUGAUGAUCAAUGGACUUUa 2 20 176 199 [mm9:2:151336981-151337004:+] 0.6491 121 0 -11.80 -0.1015 MIMAT0000540 mmu-miR-93 386649 Nsfl1c gauGGACG-UGCUUGU--CGUGAAAc ::||: |:|| || | ||||| guuUUUGUGAUGAUCAAUGGACUUUa 2 21 174 199 [mm9:2:151336979-151337004:+] 0.6491 122 0 -9.96 -0.1005 MIMAT0000746 mmu-miR-381 386649 Nsfl1c ugucucucgaacgggAACAUAu |||||| uuguuuucucuuuagUUGUAUu 2 8 146 167 [mm9:2:151336951-151336972:+] 0.6491 120 6 -7.76 -0.1061 MIMAT0003169 mmu-miR-539 386649 Nsfl1c ugUGUGGUUCCUAUUAAA-GAGg |::|| : |: :|||| ||| ccAUGCCCGUGGGGAUUUCCUCc 2 21 48 70 [mm9:2:151336853-151336875:+] 0.6491 120 0 -16.96 -0.1676 MIMAT0003169 mmu-miR-539 386649 Nsfl1c ugugugguuccuauuAAAGAGg |||||| caguuggacauuuguUUUCUCu 2 8 135 156 [mm9:2:151336940-151336961:+] 0.6491 120 6 -8.04 -0.1371 MIMAT0003730 mmu-miR-592 386649 Nsfl1c uguaguagcguauaacUGUGUUa |||||| gaaaaaaaaauaaaaaACACAAa 2 8 202 224 [mm9:2:151337007-151337029:+] 0.6491 120 6 -5.10 -1.1421 MIMAT0004869 mmu-miR-421 386649 Nsfl1c cgcggguuaauuacaGACAACua |||||| -------ccgcccagCUGUUGcc 3 9 1 16 [mm9:2:151336806-151336821:+] 0.7409 120 0 -19.19 -0.2763 MIMAT0004896 mmu-miR-590-3p 386649 Nsfl1c ugaucgaauauguaUUUUAAu |||||| aaauaaaaaacacaAAAAUUu 2 8 209 229 [mm9:2:151337014-151337034:+] 0.6491 120 6 -2.75 -0.1883 MIMAT0004936 mmu-miR-873 386649 Nsfl1c uccucugaguguucAAGGACg |||||| cucuuuaguuguauUUCCUGg 2 8 153 173 [mm9:2:151336958-151336978:+] 0.6491 120 6 -9.77 -0.2010 MIMAT0004941 mmu-miR-544 386649 Nsfl1c cucgaacgaUUUUU--ACGUCUUa ||||| || |||| aaaaaacacAAAAAUUUGAAGAA- 2 14 213 235 [mm9:2:151337018-151337040:+] 0.6491 120 0 -3.05 -0.3578

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G053307 Nsfl1c Mus musculus 386649

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Nsfl1c mmu-miR-763 beg:1 end:12 pic:3' CGGTGACCAAGAAGGGTCGACC 5'& |||||||| &5' -------------CCCAGCTG- 3' Nsfl1c mmu-miR-1943 beg:10 end:27 pic:3' AGGTCCACGGGTCTAGGAGGGAA 5'& ||||. ||||||| &5' ------TGCCTCA--CCTCCCT- 3' Nsfl1c mmu-miR-1947 beg:94 end:113 pic:3' GTCGTGAGTCGATCGAGCAGGA 5'& ||| | || | ||||||| &5' CAGTGC-CA-CGT-CTCGTCC- 3' Nsfl1c mghv-miR-M1-3 beg:3 end:24 pic:3' TTCGCGTTGAGGAC-GAGTGGAG 5'& ||.|| .|| |||||||| &5' -----CAGCTGTTGCCTCACCTC 3' Nsfl1c mmu-let-7b beg:0 end:20 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& ||.| ||.|. |.||||| &5' --CCGCCCAGCTGT-TGCCTCA 3' Nsfl1c mmu-let-7c beg:3 end:20 pic:3' TTGGTATGTTGGATGATGGAGT 5'& ||.|. |.||||| &5' -------CAGCTGT-TGCCTCA 3' Nsfl1c mmu-let-7i beg:0 end:20 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& || | |.||..|.||||| &5' ----GC-CCAGCTGTTGCCTCA 3' Nsfl1c mmu-miR-1224 beg:14 end:38 pic:3' GAGGTGGAGGGG-TCA-GGAGTG 5'& .||||||||. ||| .||| | &5' --TCACCTCCCTAAGTGTCTCCC 3' Nsfl1c mmu-miR-139-5p beg:26 end:48 pic:3' GACCTCTGTGCACG--------TGACATCT 5'& |||. |||||.| &5' ----------GTGTCTCCCATGACTGTGG- 3' Nsfl1c mmu-miR-1906 beg:0 end:16 pic:3' TCGGGACGGAGTCCGACGACGT 5'& || ||| || ||||.||| &5' ---CC-GCC-CA-GCTGTTGC- 3' Nsfl1c mmu-miR-1929 beg:113 end:132 pic:3' GAGACGAGATATTTCAGGATCTT 5'& |||||. ||.|||| &5' ----GCTCTGGAT--TCTTAGA- 3' Nsfl1c mmu-miR-1933-5p beg:22 end:44 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& ||||| | |||||||| &5' ---CTAAGTGTCT-C-CCATGACT 3' Nsfl1c mmu-miR-1982star beg:50 end:73 pic:3' GGAGGGG--TCCTG--GGAGGGTT 5'& ||| .|||. ||||||| &5' ---CCCGTGGGGATTTCCTCCCA- 3' Nsfl1c mmu-miR-2136 beg:74 end:89 pic:3' GTGTAGAGTCAGTTGTGGGTC 5'& || |||||.|| &5' ---------GTACACACCTAG 3' Nsfl1c mmu-miR-2141 beg:4 end:25 pic:3' TTGAAAAGACT--GTGGAGGA 5'& |.|| .|| ||||||| &5' AGCTG--TTGCCTCACCTCC- 3' Nsfl1c mmu-miR-30c-1star beg:23 end:39 pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& .|| . ||||||| &5' --------TAAGTGTCTCCCA- 3' Nsfl1c mmu-miR-30c-2star beg:25 end:39 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& ||. ||||||| &5' ---------AGTG-TCTCCCA- 3' Nsfl1c mmu-miR-350 beg:168 end:184 pic:3' CTTTCACATACCC-GAAACACTT 5'& |||| .||||||| &5' ---------TGGGTTTTTGTGA- 3' Nsfl1c mmu-miR-666-5p beg:39 end:58 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& || . || ||||||. &5' ----CT-GTGGCCATGCCCGT- 3' Nsfl1c mmu-miR-673-3p beg:106 end:124 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& | | .|||.|.||| &5' --------GTCCGTAGCTCTGGA 3' Nsfl1c mmu-miR-707 beg:23 end:45 pic:3' GCATCCGTTCGCC----GTACTGAC 5'& .|||.| |||||||| &5' ------TAAGTGTCTCCCATGACTG 3' Nsfl1c mmu-miR-708star beg:145 end:164 pic:3' GATCTTCGAGTGTCAGATCAAC 5'& |.|. | |.|||||| &5' ------GTTTTCTCTTTAGTTG 3' Nsfl1c mmu-miR-92astar beg:5 end:23 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& || .. ||.||||| &5' -----GCTGTTG--CCTCACCT 3' Nsfl1c mmu-miR-98 beg:3 end:20 pic:3' TTGTTATGTTGAATGATGGAGT 5'& ||.|| |.||||| &5' -------CAGCTGT-TGCCTCA 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Nsfl1c mmu-let-7a 7 25 -UGAUAUGUUGGAUGAUGGAGU :||:| :||| | ||||| AGCUGUU--GCCU-C-ACCUCC Nsfl1c mmu-let-7b 1 21 UUGGUGUGUUGGAUGAUGGAGU- ||:| ||:|: |:||||| --CCGCCCAGCUGU-UGCCUCAC Nsfl1c mmu-let-7f 5 21 UGAUAUGUUAGAUGAUGGAGU- ||: ||::|:||||| -----CCAG-CUGUUGCCUCAC Nsfl1c mmu-let-7g 2 21 UGACAUGU-UUGAUGAUGGAGU- :| |:||::|:||||| ----CGCCCAGCUGUUGCCUCAC Nsfl1c mmu-let-7i 2 21 UGUCGUGUUUGAUGAUGGAGU- || | |:||::|:||||| --CGC-CCAGCUGUUGCCUCAC Nsfl1c mmu-miR-140* 41 61 AGGCACCAAGAUGGGACACCAU |:|||| |:||| |||| ACUGUGGCCAUGCCC-GUGGG- Nsfl1c mmu-miR-143 86 111 ACUCGAU---GUCACGAAGUAGAGU- ||| |||||| |:||||: -UAGCCCUUCCAGUGCCACGUCUCGU Nsfl1c mmu-miR-152 23 49 -GGGUUCA-AGACAGUAC-GUGACU- ||:|||| ||| |||| | ||: CCCUAAGUGUCUCCCAUGACUGUGGC Nsfl1c mmu-miR-17-3p 25 49 AUGUUCACGGG----AGUGACGUCA :|||||:|: | ||||::| -CUAAGUGUCUCCCAUGACUGUGGC Nsfl1c mmu-miR-181a 15 47 UGAGUGGCUG---UCGCA------ACUUACAA |||||| ||:|| ||| ||| CCUCACCUCCCUAAGUGUCUCCCAUGACUGUG Nsfl1c mmu-miR-183 90 104 GUCACUUAAGAUGGUCACGGUAU || ||||||||| --------CCUUCCAGUGCCAC- Nsfl1c mmu-miR-184 87 115 -UGGGAAUAGUCA------AGAGGCAGGU- :||||| |||| |||| ||||: AGCCCUUC-CAGUGCCACGUCUC-GUCCGU Nsfl1c mmu-miR-185 97 115 CUUGACGGAA-AGAG-AGGU- |||| |||| |||: ---GUGCCACGUCUCGUCCGU Nsfl1c mmu-miR-216b 50 70 AGUGUAAACGGACGUCUCUAAAGGG- |||| |::|:|||||||: ------AUGCCCGUGGGGAUUUCCUC Nsfl1c mmu-miR-24 29 52 GACA-AGGACGACUUGAC-UCGGU- ||| ||| ||| ||| :|||| GUGUCUCCCA-UGA-CUGUGGCCAU Nsfl1c mmu-miR-31 5 51 -GUCGAUA-CGG-----------UCGUAGAA-----------CGGA |||||:| ||| ||::||| ||| CCAGCUGUUGCCUCACCUCCCUAAGUGUCUCCCAUGACUGUGGCCA Nsfl1c mmu-miR-331 41 63 AAGAU-CCUAUCCGGGU-CCCCG ||: || ||||: |||| -ACUGUGGCCAUGCCCGUGGGGA Nsfl1c mmu-miR-34a 80 104 UUGUUGGUCGAUUCUGUGACGGU- ||| |:||| || ||||| CACACCUAGCCCUUCCAGUGCCAC Nsfl1c mmu-miR-350 158 185 ACUUUC-ACAU-----ACCC-GAAACACUU || |||| |||| :||||||| ---UAGUUGUAUUUCCUGGGUUUUUGUGAU Nsfl1c mmu-miR-423 55 80 GACUCCCC----GGAGUCUGGCUCGA | |||| |||| ||| |: -CGUGGGGAUUUCCUCCCACCCCGUA Nsfl1c mmu-miR-449b 81 103 GGUCGAUCGUUAC-GUGACGGA || ||||| || |||| ACACCUAGCCCUUCCAGUGCCA Nsfl1c mmu-miR-455-3p 43 62 UCACAUAUACGGGCACCUGACGUA ||| ||||||||||: UGUGGCCAUGCCCGUGGGG----- Nsfl1c mmu-miR-491 52 75 -GGAGUACCUUCCCAA-GGGGUGA || |:|||:: :||||| GCC-CGUGGGGAUUUCCUCCCACC Nsfl1c mmu-miR-503 94 120 CGUCAUGA--CAA---GGGCGACGAU ||||:| || :|||: ||| CCAGUGCCACGUCUCGUCCGUAGCUC Nsfl1c mmu-miR-539 48 72 UGUGUGGU--UCCUAUUAAA-GAGG- ||::|| :||: |||| |||| CCAUGCCCGUGGGG--AUUUCCUCCC Nsfl1c mmu-miR-542-5p 43 79 GCACUG-------UACUACUA---------GGGGCUC |||:| :|| ||| ||||| UGUGGCCAUGCCCGUGGGGAUUUCCUCCCACCCCGU- Nsfl1c mmu-miR-546 91 105 CUGAGG-CACGGUGGUA :||| ||||||| -CUUCCAGUGCCACG-- Nsfl1c mmu-miR-652 76 104 ACGUGU------UGGGAUCACCGCGGUAA |:||| :|||| |:|||| CGUACACACCUAGCCCUUCCAGUGCCAC- Nsfl1c mmu-miR-666 31 59 CCGAGAGUGU-C-GACA------CGGGCGA |||| || | |||| |||||: --GUCUCCCAUGACUGUGGCCAUGCCCGUG Nsfl1c mmu-miR-669c 70 89 UGUGUGUAGGUGUGUGUUGAUA ||| ||::||||| ||| --CCACC-CCGUACACACCUAG Nsfl1c mmu-miR-674 80 102 AUGUGGUGAGGGUAGAGUCACG- ||||| ||| || |||||| CACACCUAGCCCUUC-CAGUGCC Nsfl1c mmu-miR-675-5p 40 76 -UGACACC----CGGG-------AAAGGC--GUGGU ||||||| |||| ||||| |||| GACUGUGGCCAUGCCCGUGGGGAUUUCCUCCCACCC Nsfl1c mmu-miR-680 32 57 -GGGGGUACAGUCGUC--UACGGG- |:|||||| | |::| |||||| UCUCCCAUGACUGUGGCCAUGCCCG Nsfl1c mmu-miR-685 12 43 CACGGAGUGGAGU------CGGUA---ACU- ||||||||||| |:| ||| UUGCCUCACCUCCCUAAGUGUCUCCCAUGAC Nsfl1c mmu-miR-689 45 65 CCUGGGGCGGCUCGCCCCUGC |:|| ||| |:|||||: UGGCCAUGCCC-GUGGGGAUU Nsfl1c mmu-miR-699 86 103 GCUCGGUCCAGCGUGACGGA |||| || || |||| -UAGCCCU-UC-CAGUGCCA Nsfl1c mmu-miR-700 39 60 CCACCUGA-GCCAA---GGGCGCAC |||| :|| ||||:| ---UGACUGUGGCCAUGCCCGUGG- Nsfl1c mmu-miR-705 2 27 ACGGG-------UGGGGUGGAGGGUGG |||| :||:|||||||| CGCCCAGCUGUUGCCUCACCUCCCU-- Nsfl1c mmu-miR-707 25 46 GCAUCCGUUCGCC----GUACUGAC- :|||:| |||||||| -----CUAAGUGUCUCCCAUGACUGU Nsfl1c mmu-miR-709 8 26 AGGAGGACGGAGACGGAGG- || :|||||| ||||| -GCUGUUGCCUCA-CCUCCC Nsfl1c mmu-miR-744 41 81 CGACAAU----CGGG-AUC-------------GGGGCGU- |||| |||| |:| |||||:| ACUGUGGCCAUGCCCGUGGGGAUUUCCUCCCACCCCGUAC Nsfl1c mmu-miR-762 66 94 CGAGACA-GGGCCG----GGGUCGGGG- ||| |||| ||:|||||: CCUCCCACCCCGUACACACCUAGCCCUU Nsfl1c mmu-miR-763 115 143 -CGGUGACC-AAGAA----GGGUCGACC- ||: |||| ||||| ::|||:||| AGCU-CUGGAUUCUUAGACUUCAGUUGGA Nsfl1c mmu-miR-764-3p 7 38 -UGUCAACGGU-------GAUAC-CGGAGGA :| |||||| ||| | |:|||| AGCUGUUGCCUCACCUCCCUAAGUGUCUCCC Nsfl1c mmu-miR-770-3p 93 115 -GGUCGAGGUGCAGUCCGGGUGC ||||: ||||||| |:||: UCCAGUGCCACGUCUCGUCCGU- Nsfl1c mmu-miR-216b 61 68 AGUGUAA------------------ACGGACGUCUCUAAAGGG |||| | |:|||||||: UAAGUGUCUCCCAUGACUGUGGCCAUGCCCGUGGGGAUUUCCUC Nsfl1c mmu-miR-350 177 184 ACUU-------------UCA-CAU-----ACCC-GAAACACUU ||| ||| |||| :||||||| ACAUUUGUUUUCUCUUUAGUUGUAUUUCCUGGGUUUUUGUGAU Nsfl1c mmu-miR-705 67 74 -------------ACGGGUG-GGGU---------GGAGGGUGG || |||: |||: ||||||||| UCUCCCAUGACUGUGGCCAUGCCCGUGGGGAUUUCCUCCCACCC Nsfl1c mmu-miR-707 37 44 GCAUCC------------------GUUCGCC----GUACUGAC :|||:| |||||||| CGCCCAGCUGUUGCCUCACCUCCCUAAGUGUCUCCCAUGACUGU Nsfl1c mmu-let-7a 1 19 ugauauGUUGGAUGAUGGAGU | | ||::|:||||| --ccgcCCAGCTGTTGCCTCA Nsfl1c mmu-let-7f 1 19 ugauauGUUAGAUGAUGGAGU | | ||::|:||||| --ccgcCCAGCTGTTGCCTCA Nsfl1c mmu-let-7g 1 19 ugacauGUUUGAUGAUGGAGU | |:||::|:||||| --ccgcCCAGCTGTTGCCTCA Nsfl1c mmu-let-7i 1 19 uGUCGUGUUUGAUGAUGGAGU | || | |:||::|:||||| -CCGC-CCAGCTGTTGCCTCA Nsfl1c mmu-miR-140* 22 49 AGGCA-CCA-AGAUGG----GACACCau ||| | || ||| || |||||| TCCCTAAGTGTCTCCCATGACTGTGGcc Nsfl1c mmu-miR-143 85 109 acUCG---AUGUCACGAAGUAGAGu ||| | |||||| |:|||| ctAGCCCTTCCAGTGCCACGTCTCg Nsfl1c mmu-miR-152 24 45 GGGUUCA-AGACAGUACGUGACu ||:|||| ||| |||| |||| CCTAAGTGTCTCCCATG-ACTGt Nsfl1c mmu-miR-17-3p 24 48 augUUCAC---GGG-AGUGACGUCa ||||| ||| | ||||::| cctAAGTGTCTCCCATGACTGTGGc Nsfl1c mmu-miR-183 82 104 gucacuuaaGAUGGUCACGGUau || ||||||||| cacctagccCTTCCAGTGCCAcg Nsfl1c mmu-miR-184 88 113 uGGGAAUAGUCAAG----AG-GCAGGu ||||| |||| | || ||||| gCCCTT-CCAGTGCCACGTCTCGTCCg Nsfl1c mmu-miR-185 94 113 cuUGACGG-AAAGAG-AGGu | |||| |||| ||| ccAGTGCCACGTCTCGTCCg Nsfl1c mmu-miR-216b 44 68 aguguaaACGGACGUCUCUAAAGGg |||| |::|:||||||| gtggccaTGCCCGTGGGGATTTCCt Nsfl1c mmu-miR-30d 132 154 GAAGGUCAGCCCCU--ACAAAUGu ||| ||||:|| | ||||| | CTT-CAGTTGGACATTTGTTTTCt Nsfl1c mmu-miR-31 1 17 GUCGAUACGGUCGUAGAACGGA | || ||||| | |||||| CCGC----CCAGC-TGTTGCCT Nsfl1c mmu-miR-324-5p 46 66 guGGUUACGGGAUCCCCUAcgc || |||||| |||||| ggCC-ATGCCCGTGGGGATttc Nsfl1c mmu-miR-331 40 62 aaGAU-CCUAUCCGGGU-CCCCg ||: || | ||||: |||| gaCTGTGGCCATGCCCGTGGGGa Nsfl1c mmu-miR-350 155 184 acuuUC-ACAU-----ACCC-GAAACACUu || |||| |||| :||||||| ctttAGTTGTATTTCCTGGGTTTTTGTGAt Nsfl1c mmu-miR-423 54 90 GACUCCCC----GGA-----------GUCUGGCUCGa | | |||| ||| || ||| ||| CCGTGGGGATTTCCTCCCACCCCGTACACACCTAGCc Nsfl1c mmu-miR-455-3p 28 47 UCACAUAUACGGGCACCUGACgua ||||| | ||| | ||||| AGTGTCT---CCCAT-GACTGtgg Nsfl1c mmu-miR-491 46 74 ggaGUAC---CUUCCC--AAG--GGGUGa |||| | :||| ||| ||||| ggcCATGCCCGTGGGGATTTCCTCCCACc Nsfl1c mmu-miR-542-5p 37 58 GCACUG-UACUACUAGGGGCuc | |||| :||: || |||| CATGACTGTGGCCATGCCCGtg Nsfl1c mmu-miR-546 90 106 cugAGG-CACGGUGgua ||| ||||||| cctTCCAGTGCCACgtc Nsfl1c mmu-miR-652 80 104 acGUG--UUGGGAUCACCGCGGUaa ||| |:|||| |:|||| caCACCTAGCCCTTCCAGTGCCAcg Nsfl1c mmu-miR-669c 68 88 uGUGUGUAGGUGUGUGUUGAUa | ||| ||::||||| ||| tCCCAC-CCCGTACACACCTAg Nsfl1c mmu-miR-674 78 100 AUGUGGUGA--GGGUAGAGUCACG ||||| || ||| || |||||| TACACACCTAGCCCTTC-CAGTGC Nsfl1c mmu-miR-675-5p 53 75 uGACACCCGGGAA--AGGCGUGGu | ||||| :|| ||| |||| cCCGTGGGGATTTCCTCC-CACCc Nsfl1c mmu-miR-680 33 55 GGGGGUACAGUCGUC--UACGGG |:|||||| | |::| |||||| CTCCCATGACTGTGGCCATGCCC Nsfl1c mmu-miR-685 29 54 CACGGAG-----UGGAGUCGGUAacu |||:||| ||: ::||||| GTGTCTCCCATGACTGTGGCCATgcc Nsfl1c mmu-miR-685 1 15 cacggaGUGGAGUCGGUAACu |:|| ||||::||| -----cCGCC-CAGCTGTTGc Nsfl1c mmu-miR-699 85 102 GCUCGGUCCAGCGUGACGGa | |||| |: || |||| CTAGCC--CTTCCAGTGCCa Nsfl1c mmu-miR-700 43 60 cCACCUGAGCCAAGGGCGCac |||| | :| ||||:| tGTGGCCATG---CCCGTGgg Nsfl1c mmu-miR-705 45 74 ACGGGUG-GGGU---------GGAGGGUGG || |||: |||: ||||||||| TGGCCATGCCCGTGGGGATTTCCTCCCACC Nsfl1c mmu-miR-705 13 40 ACGG-GUGGGGUG-------GAGGGUgg |||| ||||:| | |||||| TGCCTCACCTCCCTAAGTGTCTCCCAtg Nsfl1c mmu-miR-707 20 44 gcauccgUUCGC----CGUACUGAC |||:| |||||||| cctccctAAGTGTCTCCCATGACTG Nsfl1c mmu-miR-709 1 19 aGG-AGGACGGAGACGGAGg || || ||: :|||||| -CCGCCCAGCTGTTGCCTCa Nsfl1c mmu-miR-744 74 95 cGACAAUCG-GGAUCGGGGCGu | || | ||||||||: | cCCGTACACACCTAGCCCTTCc Nsfl1c mmu-miR-763 116 141 CGGUGACC-AAGAA----GGGUCGACC ||: |||| ||||| ::|||:||| GCT-CTGGATTCTTAGACTTCAGTTGG Nsfl1c mmu-miR-764-3p 8 37 uGUCAACG--GU-----GAUAC-CGGAGGa | ||||| || ||| | |:|||| gCTGTTGCCTCACCTCCCTAAGTGTCTCCc Nsfl1c mmu-miR-770-3p 85 104 GGUCGAGGUGCAGUCCGGGUGC |:||| |: | ||| ||||| CTAGCCCTTC--CAGTGCCACG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nsfl1c RAID00029227 mmu-miR-421-3p miRNA MIMAT0004869 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID00298377 mmu-miR-592-5p miRNA MIMAT0003730 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID00455683 mmu-miR-93-5p miRNA MIMAT0000540 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID00828400 mmu-miR-381-3p miRNA MIMAT0000746 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID00998363 mmu-miR-6951-3p miRNA MIMAT0027803 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID01076989 mmu-miR-7116-3p miRNA MIMAT0028130 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID01183741 mmu-miR-1943-5p miRNA MIMAT0009408 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID01308102 mmu-miR-7016-5p miRNA MIMAT0027936 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID01482868 mmu-miR-544-3p miRNA MIMAT0004941 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID01672574 mmu-miR-194-5p miRNA MIMAT0000224 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID01780559 mmu-miR-6967-5p miRNA MIMAT0027836 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID01789790 mmu-miR-183-5p miRNA MIMAT0000212 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID01798890 mmu-miR-106b-5p miRNA MIMAT0000386 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID01811566 mmu-miR-539-5p miRNA MIMAT0003169 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID02609781 mmu-miR-6913-5p miRNA MIMAT0027726 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID02868930 mmu-miR-129-5p miRNA MIMAT0000209 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID03048755 mmu-miR-136-5p miRNA MIMAT0000148 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID03380373 mmu-miR-590-3p miRNA MIMAT0004896 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID03647877 mmu-miR-350-3p miRNA MIMAT0000605 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID03681978 mmu-miR-149-3p miRNA MIMAT0016990 Nsfl1c mRNA 386649 Prediction 0.1828 Nsfl1c RAID03755655 mmu-miR-873a-5p miRNA MIMAT0004936 Nsfl1c mRNA 386649 Prediction 0.1828