DNA & RNA Element - circBase circRNA ID Chrom Start End Strand mmu_circ_0001191 chr4 40894845 40894899 -

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000143 mmu-miR-9* 12017 Bag1 ugaaagccaauagaUCGAAAUa ||||||| cuggccugaagagcAGCUUUAc 2 9 23 44 [mm9:4:40883576-40883597:-] 0.6783 140 7 -7.52 -0.1576 MIMAT0004542 mmu-miR-191* 12017 Bag1 cccuugcuuuagguUCACGUCg ||||||| --------------AGUGCAGu 2 9 1 8 [mm9:4:40883612-40883619:-] 0.7338 140 7 -12.78 -0.5111 MIMAT0004633 mmu-miR-27a* 12017 Bag1 acGAGUGUUCGUCG--AU-UCGGGa || | :|||||| || ||||| gcCUGAAGAGCAGCUUUACAGCCCu 2 21 26 50 [mm9:4:40883570-40883594:-] 0.6783 131 0 -24.26 -0.4754 MIMAT0000571 mmu-miR-331-3p 12017 Bag1 aagauccUAUCCG-GGUCCCCg ||:| : ||||||| uuucuccAUGGCUGCCAGGGGc 2 15 77 98 [mm9:4:40883522-40883543:-] 0.7059 145 7 -23.17 -0.3146 MIMAT0004704 mmu-miR-335-3p 12017 Bag1 ccaguccucguuaUUACUUUUu |||||||| uccgucgguucucAAUGAAAAa 2 10 128 149 [mm9:4:40883471-40883492:-] 0.7059 145 7 -12.91 -1.1088 MIMAT0003735 mmu-miR-672 12017 Bag1 agugugugucaugugGUUGGAgu |||||| aaaguccugucuuugCAACCUga 3 9 147 169 [mm9:4:40883451-40883473:-] 0.6434 120 0 -10.97 -0.2051 MIMAT0004825 mmu-miR-423-5p 12017 Bag1 uuUCAGAGCG-AGAGACGGG-GAGu || :|: | | |||||| ||| gcAGCUUUACAGCCCUGCCCUCUCu 2 22 35 59 [mm9:4:40883561-40883585:-] 0.6783 120 0 -19.52 -0.4112 MIMAT0003496 mmu-miR-706 12017 Bag1 aaaaaacucuguccCAAAGAGa ||||||| aacagaagucgccuGUUUCUCc 2 9 62 83 [mm9:4:40883537-40883558:-] 0.7059 140 7 -9.58 -0.5676 MIMAT0004238 mmu-miR-743a 12017 Bag1 agaugagucgaaccACAGAAAg ||||||| caaugaaaaaguccUGUCUUUg 2 9 140 161 [mm9:4:40883459-40883480:-] 0.7059 140 7 -6.50 -0.2423 MIMAT0004840 mmu-miR-743b-3p 12017 Bag1 agauaagucguacuACAGAAAg ||||||| caaugaaaaaguccUGUCUUUg 2 9 140 161 [mm9:4:40883459-40883480:-] 0.7059 140 7 -6.86 -0.2423 MIMAT0009397 mmu-miR-1933-3p 12017 Bag1 uaucAGUGUGAC--UACCAGGACc || || || | |||||| cgguUCUCAAUGAAAAAGUCCUGu 2 19 133 156 [mm9:4:40883464-40883487:-] 0.7059 121 6 -13.00 -0.1614 MIMAT0009437 mmu-miR-1964 12017 Bag1 uuucGGCCUCGGGUCUUCAGCc |:||| ||||||||| cucuCUGGA--ACAGAAGUCGc 2 19 54 73 [mm9:4:40883547-40883566:-] 0.7059 155 7 -23.77 -0.4869 MIMAT0011222 mmu-miR-2146 12017 Bag1 guguaccuuggGAAGAGGUg :||||||| gaagucgccugUUUCUCCAu 2 10 66 85 [mm9:4:40883535-40883554:-] 0.7059 141 7 -13.97 -0.5237 MIMAT0000158 mmu-miR-146a 12017 Bag1 uuggguaccuuaAGUCAAGAGu ||:|||||| ccugcuccuccgUCGGUUCUCa 2 11 120 141 [mm9:4:40883479-40883500:-] 0.7059 134 6 -17.69 -0.1809 MIMAT0000529 mmu-miR-20a 12017 Bag1 gaUGGACGUGAUAUUCGU-GAAAu ||: || : | :|||| |||| guACUGGCCUGAAGAGCAGCUUUa 2 22 20 43 [mm9:4:40883577-40883600:-] 0.6783 125 0 -16.95 -0.3344 MIMAT0000540 mmu-miR-93 12017 Bag1 gaUGGACGUGCUUGUCGU-GAAAc ||: || :||| |||| |||| guACUGGCCUGAAGAGCAGCUUUa 2 22 20 43 [mm9:4:40883577-40883600:-] 0.6783 137 0 -20.21 -0.3290 MIMAT0000649 mmu-miR-17 12017 Bag1 gaugGACGUGACAU-UCGU-GAAAc ||| ||| | |||| |||| uguaCUGGCCUGAAGAGCAGCUUUa 2 20 19 43 [mm9:4:40883577-40883601:-] 0.6783 126 0 -16.05 -0.3344 MIMAT0000666 mmu-miR-320 12017 Bag1 agCGGGAGAGUUGGGUCGAAAa | ||| |: ||||||| cuGGCCU-GAAGAGCAGCUUUa 2 21 23 43 [mm9:4:40883577-40883597:-] 0.6783 142 7 -15.54 -0.4228 MIMAT0003187 mmu-miR-20b 12017 Bag1 gaUGGACGUGAUACUCGU-GAAAc ||: || : | ||||| |||| guACUGGCCUGAAGAGCAGCUUUa 2 22 20 43 [mm9:4:40883577-40883600:-] 0.6783 129 0 -16.79 -0.3344 MIMAT0003475 mmu-miR-146b 12017 Bag1 ucggauaccuuaAGUCAAGAGu ||:|||||| ccugcuccuccgUCGGUUCUCa 2 11 120 141 [mm9:4:40883479-40883500:-] 0.7059 134 6 -18.85 -0.1809 MIMAT0004853 mmu-miR-874 12017 Bag1 agccAGGGAGC-CCGGU-CCCGUc ||| | | |||| ||||| uuucUCCAUGGCUGCCAGGGGCAa 2 19 77 100 [mm9:4:40883520-40883543:-] 0.7059 121 0 -21.65 -0.3952

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G005814 Bag1 Mus musculus 12017

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Bag1 mmu-miR-331-3p beg:83 end:99 pic:3' AAGATCCTATCCG--GGTCCCCG 5'& ||| |||||||| &5' ----------GGCTGCCAGGGGC 3' Bag1 mcmv-miR-m108-2-5p.1 beg:0 end:22 pic:3' GCCACGAGCGCAGCTCACTGGCG 5'& |||| |.| |||||.|.|. &5' --GTGCA-GTGGAGAGTGGCTGT 3' Bag1 mcmv-miR-M87-1 beg:71 end:93 pic:3' CGACGGCGACGGCTGCCGACGGA 5'& |||. || || |.||||||| &5' -CTGTTTCT-CC-ATGGCTGCC- 3' Bag1 mmu-miR-1224 beg:118 end:142 pic:3' GAGGTGGAGG-GGTCAGGAGTG 5'& || | ||||| .|.||.|||| &5' CTGCTCCTCCGTCGGTTCTCA- 3' Bag1 mmu-miR-125a-3p beg:51 end:78 pic:3' CCGAGGGTTCTTGG----AGTGGACA 5'& |||.| .|||| ||.||||| &5' --CTCTCTGGAACAGAAGTCGCCTGT 3' Bag1 mmu-miR-125b-3p beg:83 end:107 pic:3' TCGAGGGTTCTCG--GATTGGGCA 5'& .||| |||.|.|| |||.|| &5' GGCTGCCAGGGGCAACTAGCC--- 3' Bag1 mmu-miR-134 beg:50 end:74 pic:3' GGGGAGACCAGTTGG--TCAGTGT 5'& ||.|||||| ||| ||||.| &5' CCTCTCTGG--AACAGAAGTCGC- 3' Bag1 mmu-miR-146a beg:122 end:142 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& .|.| ||.||||||| &5' -GCTCCTCCG--TCGGTTCTCA 3' Bag1 mmu-miR-146b beg:120 end:142 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& ||. ||.||||||| &5' -GCTCCTCCG--TCGGTTCTCA 3' Bag1 mmu-miR-151-5p beg:167 end:188 pic:3' TGATCTG-ACACTCGAGGAGCT 5'& |.||||| |||| .|.||| &5' ATTAGACTTGTGT-TTTCTC-- 3' Bag1 mmu-miR-188-5p beg:76 end:98 pic:3' GGGAGGTGGT-ACGTTCCCTAC 5'& .|||||. . ||| ||||. &5' -TCTCCATGGCTGCCAGGGG-- 3' Bag1 mmu-miR-1906 beg:146 end:169 pic:3' TCGGGACGGAGTCCGAC-GACGT 5'& ||.||||.||. || ||| &5' AGTCCTGTCTTT-GCAACCTG-- 3' Bag1 mmu-miR-1907 beg:112 end:139 pic:3' TGGAGGT-CTAGGAGACGA-CGAG 5'& |..||| | ||||| |. |.|| &5' ATTTCCCTGCTCCTCCGTCGGTTC 3' Bag1 mmu-miR-1931 beg:147 end:164 pic:3' CGGTAGCGTGGTCGGGAACGTA 5'& |. || |.|.||||| &5' ------GT-CCTGTCTTTGCA- 3' Bag1 mmu-miR-1948 beg:4 end:33 pic:3' GACATG-CTCA-CGA---GA-CGGATTT 5'& ||. |||| ||| || ||||.|| &5' --GTGGAGAGTGGCTGTACTGGCCTGAA 3' Bag1 mmu-miR-1964 beg:55 end:72 pic:3' TTTCGGCCTCGGGTCTTCAGCC 5'& |.||| ||||||||| &5' ----CTGGAA--CAGAAGTCG- 3' Bag1 mmu-miR-1981 beg:145 end:163 pic:3' CGGTGCAGATTCGGGTCGGAAATG 5'& |||.|| |.||||.| &5' ---------AAGTCCTGTCTTTGC 3' Bag1 mmu-miR-20astar beg:0 end:9 pic:3' GAAATTCACGAGCATTACGTCA 5'& |.|||||| &5' --------------AGTGCAGT 3' Bag1 mmu-miR-2139 beg:83 end:106 pic:3' CGTCAATGGTCCTCGTCGCGTCGA 5'& .| |.|||||.||| | .||| &5' --GGCTGCCAGGGGCAAC-TAGC- 3' Bag1 mmu-miR-2146 beg:66 end:86 pic:3' GTGTACCTTGGG--AAGAGGTG 5'& | .||. |||||||. &5' -----GTCGCCTGTTTCTCCAT 3' Bag1 mmu-miR-26bstar beg:48 end:67 pic:3' CTCGGTTCATTACCTCTTGTCC 5'& ||| .|||||| &5' --GCCCTCTCT---GGAACAG- 3' Bag1 mmu-miR-335-3p beg:128 end:150 pic:3' CCAGTCCTCGTTATTACTTTTT 5'& ||| || | ||||||||| &5' -GTC-GGTTCTC-AATGAAAAA 3' Bag1 mmu-miR-539 beg:68 end:84 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& |.|| .||||||| &5' ---CGCCT------GTTTCTCC 3' Bag1 mmu-miR-671-5p beg:115 end:141 pic:3' GAGGT-CGGGGAGGTC-CCGAAGGA 5'& ||| ||.|||||. ||.| | &5' -TCCCTGCTCCTCCGTCGGTTCTC- 3' Bag1 mmu-miR-707 beg:80 end:91 pic:3' GCATCCGTTCGCCGTACTGAC 5'& ||||.||| &5' -------------CATGGCTG 3' Bag1 mmu-miR-710 beg:159 end:180 pic:3' GAGTTGAGAGGGGTTCTGAACC 5'& |||| || ||||||| &5' --CAAC-CTGAATTAGACTTG- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Bag1 RAID00384506 mmu-miR-760-3p miRNA MIMAT0003898 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID00397481 mmu-miR-335-3p miRNA MIMAT0004704 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID00478013 mmu-miR-3087-5p miRNA MIMAT0014895 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID00646270 mmu-miR-17-5p miRNA MIMAT0000649 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID00695212 mmu-miR-346-3p miRNA MIMAT0017039 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID00810612 mmu-miR-146b-5p miRNA MIMAT0003475 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID01272823 mmu-miR-320-3p miRNA MIMAT0000666 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID02540547 mmu-miR-7001-5p miRNA MIMAT0027904 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID02590933 mmu-miR-7217-3p miRNA MIMAT0028403 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID02615159 mmu-miR-20b-5p miRNA MIMAT0003187 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID02784536 mmu-miR-146a-5p miRNA MIMAT0000158 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID02870465 mmu-miR-93-5p miRNA MIMAT0000540 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID03003160 mmu-miR-874-3p miRNA MIMAT0004853 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID03528015 mmu-miR-20a-5p miRNA MIMAT0000529 Bag1 mRNA 12017 Prediction 0.1828 Bag1 RAID04950126 Ttc39aos1 lncRNA 102635290 Bag1 protein 12017 Western Blot//RT-PCR 0.8808