DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004521 mmu-miR-15b* 16351 Ipp aucucgucguuuauuACUAAGc |||||| ugugauaugaucuucUGAUUCu 2 8 73 94 [mm9:4:116210702-116210723:+] 0.5568 120 6 -3.89 -0.1409 MIMAT0000137 mmu-miR-126-5p 16351 Ipp gcgcAUGGUUUUCAUUAUUac | ::|||| |||||| uauaUCUUAAAAUUAAUAAag 3 18 174 194 [mm9:4:116210803-116210823:+] 0.5514 141 0 -4.55 -0.1584 MIMAT0004574 mmu-miR-294* 16351 Ipp ucUAUCCCGGAGG--U---AAAACUCa ||| | :||:| | ||||||| ugAUAUGAUCUUCUGAUUCUUUUGAGu 2 21 75 101 [mm9:4:116210704-116210730:+] 0.5568 146 7 -14.94 -0.9465 MIMAT0004575 mmu-miR-295* 16351 Ipp cuUCACACGGGGUGUAAACUca | | | |: | |||||| ugAUUUUUCUAAAAAUUUGAau 3 21 136 157 [mm9:4:116210765-116210786:+] 0.5628 128 0 -6.65 -0.2886 MIMAT0004580 mmu-miR-34c* 16351 Ipp ggaccgacacaccaaUCACUAa |||||| gauagauaaguaaagAGUGAUu 2 8 119 140 [mm9:4:116210748-116210769:+] 0.5598 120 6 -8.30 -0.3376 MIMAT0004581 mmu-miR-34b-3p 16351 Ipp cuaccgucaccucaaUCACUAa |||||| gauagauaaguaaagAGUGAUu 2 8 119 140 [mm9:4:116210748-116210769:+] 0.5598 120 6 -11.02 -0.3349 MIMAT0004583 mmu-miR-130b* 16351 Ipp ucAUCACGUUGUCCCUUUCUCa ||| :|:| | |||||| aaUAGAUAGAUAAGUAAAGAGu 2 21 115 136 [mm9:4:116210744-116210765:+] 0.5598 128 6 -10.90 -0.1290 MIMAT0000605 mmu-miR-350 16351 Ipp cuuucacauacccgAAACACUu ||||||| aaaucaaacauauaUUUGUGAu 2 9 57 78 [mm9:4:116210686-116210707:+] 0.5568 140 7 -6.66 -1.1770 MIMAT0004665 mmu-miR-218-1* 16351 Ipp ccacGAACUGCCU-UGGUACAaa :|||| | | |||||| uucuUUUGA-GUAUUCCAUGUau 3 19 91 112 [mm9:4:116210720-116210741:+] 0.5568 127 0 -11.13 -0.1108 MIMAT0004666 mmu-miR-33* 16351 Ipp cacUACGUGACACCUUUGUAAc | |||| |:|||||| caaAAGCAC--AAGGAACAUUu 2 20 12 31 [mm9:4:116210641-116210660:+] 0.5843 132 6 -11.57 -0.1486 MIMAT0004670 mmu-miR-7a* 16351 Ipp auaccGUCUG-ACACUAAACAac || || | | |||||| caaauCAAACAUAU-AUUUGUga 3 18 56 77 [mm9:4:116210685-116210706:+] 0.5568 126 0 -5.66 -0.1981 MIMAT0001090 mmu-miR-409-3p 16351 Ipp uccccaaGUGGCUCGUUGUAAg || | || |||||| acaaaagCA-CAAGGAACAUUu 2 16 11 31 [mm9:4:116210640-116210660:+] 0.5843 121 6 -12.79 -0.1501 MIMAT0002106 mmu-miR-465a-5p 16351 Ipp aguguagUCAC-GGUAAGAUUUau |||| :: ||||||| aguaaagAGUGAUUUUUCUAAAaa 3 17 127 150 [mm9:4:116210756-116210779:+] 0.5598 135 0 -9.97 -0.3889 MIMAT0002107 mmu-miR-466a-3p 16351 Ipp agaauacacacgcacAUACAUau |||||| uugaauuaaaauggaUAUGUAau 3 9 152 174 [mm9:4:116210781-116210803:+] 0.5571 120 0 -5.51 -0.2319 MIMAT0002889 mmu-miR-532-5p 16351 Ipp ugccaggauGUGAGUUCCGUac || |||||| ---------CAGAGAAGGCAca 3 14 1 13 [mm9:4:116210630-116210642:+] 0.6923 121 0 -6.73 -0.2053 MIMAT0003167 mmu-miR-540-3p 16351 Ipp gguccuagcugGAGACUGGa :||||||| gaaaauguaggUUCUGACCa 2 10 32 51 [mm9:4:116210661-116210680:+] 0.5705 141 7 -15.48 -1.1763 MIMAT0003186 mmu-miR-369-3p 16351 Ipp uuUCUAGUUGGUACAUAAUAa | || :| :||||| ||| uaAAAUGGA-UAUGUAAUAUa 2 20 158 177 [mm9:4:116210787-116210806:+] 0.5571 125 0 -4.88 -0.1670 MIMAT0003376 mmu-miR-302c 16351 Ipp ggugacUUUGUACCUUCGUGaa |::|| |||||| cagagaAGGCACAAAAGCACaa 3 17 1 22 [mm9:4:116210630-116210651:+] 0.6923 128 0 -9.44 -0.1012 MIMAT0003732 mmu-miR-668 16351 Ipp ccAUCACCCGGCUCG--GCUCACUGu ||| | : ||: ||||||: aaUAGAUAGAUAAGUAAAGAGUGAUu 2 23 115 140 [mm9:4:116210744-116210769:+] 0.5598 125 0 -12.74 -0.2902 MIMAT0003471 mmu-miR-692 16351 Ipp cucacuccgcgaGUUUCUCua :|||||| uagauagauaagUAAAGAGug 3 10 117 137 [mm9:4:116210746-116210766:+] 0.5598 121 0 -8.46 -0.2433 MIMAT0005448 mmu-miR-467b 16351 Ipp guauauguacguccGUGAAUg |||||| aaauuaauaaaguaCACUUAu 2 8 183 203 [mm9:4:116210812-116210832:+] 0.5514 120 6 -8.43 -0.1355 MIMAT0004827 mmu-miR-297b-3p 16351 Ipp auacccauacACACAUACAUau || |||||| ugaauuaaaaUGGAUAUGUAau 3 13 153 174 [mm9:4:116210782-116210803:+] 0.5571 124 0 -7.40 -0.2277 MIMAT0004864 mmu-miR-297a* 16351 Ipp auacccauacACACAUACAUau || |||||| ugaauuaaaaUGGAUAUGUAau 3 13 153 174 [mm9:4:116210782-116210803:+] 0.5571 124 0 -7.40 -0.2277 MIMAT0004866 mmu-miR-297c* 16351 Ipp auacccauacACACAUACAUau || |||||| ugaauuaaaaUGGAUAUGUAau 3 13 153 174 [mm9:4:116210782-116210803:+] 0.5571 124 0 -7.40 -0.2277 MIMAT0004871 mmu-miR-465b-5p 16351 Ipp gucuagUCG-UGGUAAGAUUUau ||: |:: ||||||| guaaagAGUGAUUUUUCUAAAaa 3 17 128 150 [mm9:4:116210757-116210779:+] 0.5598 131 0 -6.88 -0.4012 MIMAT0004873 mmu-miR-465c-5p 16351 Ipp gucuagUCGC-GGUAAGAUUUau ||:| :: ||||||| guaaagAGUGAUUUUUCUAAAaa 3 17 128 150 [mm9:4:116210757-116210779:+] 0.5598 131 0 -9.50 -0.3950 MIMAT0004876 mmu-miR-466b-3p 16351 Ipp agaauacacacgcacAUACAUau |||||| uugaauuaaaauggaUAUGUAau 3 9 152 174 [mm9:4:116210781-116210803:+] 0.5571 120 0 -5.51 -0.2319 MIMAT0005453 mmu-miR-466b-3-3p 16351 Ipp agaauacacacgcacAUACAUaa |||||| uugaauuaaaauggaUAUGUAau 3 9 152 174 [mm9:4:116210781-116210803:+] 0.5571 120 0 -5.51 -0.2319 MIMAT0004878 mmu-miR-466c-3p 16351 Ipp agaauacacacgcacAUACAUau |||||| uugaauuaaaauggaUAUGUAau 3 9 152 174 [mm9:4:116210781-116210803:+] 0.5571 120 0 -5.51 -0.2319 MIMAT0004880 mmu-miR-466e-3p 16351 Ipp agaauacacacgcacAUACAUau |||||| uugaauuaaaauggaUAUGUAau 3 9 152 174 [mm9:4:116210781-116210803:+] 0.5571 120 0 -5.51 -0.2319 MIMAT0004931 mmu-miR-466d-3p 16351 Ipp gauacacacgcacAUACAUau |||||| gaauuaaaauggaUAUGUAau 3 9 154 174 [mm9:4:116210783-116210803:+] 0.5571 120 0 -5.51 -0.2319 MIMAT0004940 mmu-miR-511 16351 Ipp acucacgucUCGUUUUCCGUa || |:|||||| --------cAG-AGAAGGCAc 2 13 1 12 [mm9:4:116210630-116210641:+] 0.6923 130 6 -13.04 -0.1591 MIMAT0005293 mmu-miR-467e 16351 Ipp ugUAUAUGUACGAGUGUGAAUa || |:| | ||||||| aaAUUAAUAAAGU-ACACUUAu 2 21 183 203 [mm9:4:116210812-116210832:+] 0.5514 142 7 -10.95 -1.1104 MIMAT0005833 mmu-miR-669d 16351 Ipp uguaUAUGUACGUGUGUGUUCa | :|| | :|||||| gagaAGGCACAAAAGCACAAGg 2 19 3 24 [mm9:4:116210632-116210653:+] 0.6923 130 6 -13.68 -0.1096 MIMAT0005854 mmu-miR-467g 16351 Ipp uauauacacACACAUACAUau || |||||| gaauuaaaaUGGAUAUGUAau 3 13 154 174 [mm9:4:116210783-116210803:+] 0.5571 124 0 -5.15 -0.2298 MIMAT0005855 mmu-miR-467h 16351 Ipp ugUAUAUGUACGU-GUGUGAAUa | || || | :||||||| uaAAAUUAAUAAAGUACACUUAu 2 21 181 203 [mm9:4:116210810-116210832:+] 0.5514 147 7 -10.82 -1.1275 MIMAT0007873 mmu-miR-1896 16351 Ipp gaggagugggugguaGUCUCUc |||||| ---------------CAGAGAa 2 8 1 7 [mm9:4:116210630-116210636:+] 0.6923 120 6 -6.47 -0.1611 MIMAT0009427 mmu-miR-669n 16351 Ipp uguguguaggUGUGUGUUUa | :|||||| ----cagagaAGGCACAAAa 2 11 1 16 [mm9:4:116210630-116210645:+] 0.6923 126 6 -7.01 -0.3884 MIMAT0009442 mmu-miR-1969 16351 Ipp uggguacAAUUUCA-GAGGUAGAa || :||| :||||| | ugauucuUUUGAGUAUUCCAUGUa 2 17 88 111 [mm9:4:116210717-116210740:+] 0.5568 123 0 -10.33 -0.1025 MIMAT0015641 mmu-miR-3470b 16351 Ipp ggucggaccagaugUCUCACu |||||| agauagauaaguaaAGAGUGa 2 8 118 138 [mm9:4:116210747-116210767:+] 0.5598 120 6 -14.08 -0.4891 MIMAT0000148 mmu-miR-136 16351 Ipp gguagUAGUUUUG--UUUACCUca ||: :||: ||||||| uaaaaAUUUGAAUUAAAAUGGAua 3 18 145 168 [mm9:4:116210774-116210797:+] 0.5571 132 0 -5.88 -0.4597 MIMAT0000215 mmu-miR-186 16351 Ipp ucggguuuuccucUUAAGAAAc :||||||| gauaugaucuucuGAUUCUUUu 2 10 76 97 [mm9:4:116210705-116210726:+] 0.5568 141 7 -6.05 -0.7934 MIMAT0000233 mmu-miR-200b 16351 Ipp aguaguaaugguccgUCAUAAu |||||| cuucugauucuuuugAGUAUUc 2 8 84 105 [mm9:4:116210713-116210734:+] 0.5568 120 6 -4.92 -0.1271 MIMAT0000236 mmu-miR-203 16351 Ipp gauCA-CCAGGAUUUGUAAA-GUg || |||:||:| ||||| || aauGUAGGUUCUGACCAUUUGCAa 2 20 35 58 [mm9:4:116210664-116210687:+] 0.5705 134 0 -16.38 -1.0714 MIMAT0000513 mmu-miR-19b 16351 Ipp agUCAAAACGUACCUAAACGUgu :||| || | ||||||| uaGGUUCUG-A-CCAUUUGCAaa 3 22 39 59 [mm9:4:116210668-116210688:+] 0.5705 129 0 -9.61 -0.1024 MIMAT0000651 mmu-miR-19a 16351 Ipp agUCAAAACGUAUCUAAACGUgu :||| || | ||||||| uaGGUUCUG-A-CCAUUUGCAaa 3 22 39 59 [mm9:4:116210668-116210688:+] 0.5705 129 0 -9.61 -0.1024 MIMAT0000657 mmu-miR-200c 16351 Ipp agguaguaaugggccgUCAUAAu |||||| ucuucugauucuuuugAGUAUUc 2 8 83 105 [mm9:4:116210712-116210734:+] 0.5568 120 6 -6.81 -0.1271 MIMAT0000663 mmu-miR-218 16351 Ipp uguaccaaucuagUUCGUGUu ||||||| agagaaggcacaaAAGCACAa 2 9 2 22 [mm9:4:116210631-116210651:+] 0.6923 140 7 -13.11 -1.1235 MIMAT0001533 mmu-miR-448 16351 Ipp uacccuguaggAUGUAUACGUu |: |||||:| uugaauuaaaaUGGAUAUGUAa 2 12 152 173 [mm9:4:116210781-116210802:+] 0.5571 127 0 -8.39 -0.1377 MIMAT0001537 mmu-miR-429 16351 Ipp ugccguaauggucugUCAUAAu |||||| cuucugauucuuuugAGUAUUc 2 8 84 105 [mm9:4:116210713-116210734:+] 0.5568 120 6 -5.18 -0.1271 MIMAT0004896 mmu-miR-590-3p 16351 Ipp ugaucgaAUAU-GUAUUUUAAu |||| | ||||||| uauguaaUAUAUCUUAAAAUUa 2 15 167 188 [mm9:4:116210796-116210817:+] 0.5514 153 7 -5.91 -1.2703 MIMAT0004896 mmu-miR-590-3p 16351 Ipp ugaUCGAAUAUGUAUUUUAau | :||: |: |||||| aaaAAUUUGAAU-UAAAAUgg 3 19 146 165 [mm9:4:116210775-116210794:+] 0.5571 128 0 -1.82 -0.3145 MIMAT0004896 mmu-miR-590-3p 16351 Ipp ugauCGAAUAUGUAUUUUAAu | || | | |||||| gaguGAUUUUUCUAAAAAUUu 2 18 133 153 [mm9:4:116210762-116210782:+] 0.5628 121 6 -1.37 -0.1569

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G031622 Ipp Mus musculus 16351

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ipp mmu-miR-218 beg:5 end:23 pic:3' TGTACCAATCTAGTTCGTGTT 5'& || |||||||| &5' ----GGCACAA--AAGCACAA 3' Ipp mmu-miR-190 beg:162 end:180 pic:3' TGGATTATATAGTTTGTATAGT 5'& .||||.| ||.||||| &5' ----GATATGT--AATATATC- 3' Ipp mmu-miR-1931 beg:39 end:58 pic:3' CGGTAGCGTGGTCGG-GAACGTA 5'& |. |. || .||||| &5' ------GTTCTGACCATTTGCA- 3' Ipp mmu-miR-1957 beg:71 end:90 pic:3' CAGTATACGAGATGGTGAC 5'& || ||||| ||| ||| &5' GTGATATGATCTT---CTG 3' Ipp mmu-miR-294star beg:81 end:101 pic:3' TCTATCCCGGAGGT----AAAACTCA 5'& |.||.. |||||||| &5' --------CTTCTGATTCTTTTGAGT 3' Ipp mmu-miR-33star beg:14 end:31 pic:3' CACTACGTGACACCTTTGTAAC 5'& |||| |.|||||| &5' -----GCACAA--GGAACATT- 3' Ipp mmu-miR-383 beg:71 end:93 pic:3' TCGGTGTCAGTGGAAGACTAGA 5'& |. |.| | |.||||||||. &5' -GTGATA-TGATCTTCTGATT- 3' Ipp mmu-miR-450b-5p beg:39 end:60 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& .||| || ||| .|||||| &5' -GTTCT-GACCAT-TTGCAAA- 3' Ipp mmu-miR-452 beg:46 end:61 pic:3' CAGAGTCAAAGG-AGACGTTTGT 5'& || |.||||||. &5' ----------CCATTTGCAAAT- 3' Ipp mmu-miR-467c beg:61 end:87 pic:3' GTGTATATG--TAC-GTGCGTGAAT 5'& |||||||. .|| .|.| ||| &5' -ACATATATTTGTGATATGATCTT- 3' Ipp mmu-miR-539 beg:128 end:146 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& ||| |.||||.||. &5' -------AAGAGTGATTTTTCT 3' Ipp mmu-miR-540-3p beg:36 end:51 pic:3' GGTCCTAGCTGGAGACTGGA 5'& .||| .||||||| &5' -TAGG------TTCTGACC- 3' Ipp mmu-miR-92a beg:161 end:176 pic:3' GTCCGGCCCTGTTCACGTTAT 5'& |||.| ||.|||| &5' -------GGATA--TGTAATA 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ipp RAID00368908 mmu-miR-590-3p miRNA MIMAT0004896 Ipp mRNA 16351 Prediction 0.2202 Ipp RAID00497508 mmu-miR-448-3p miRNA MIMAT0001533 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID00539772 mmu-miR-701-3p miRNA MIMAT0017257 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID00556339 mmu-miR-540-3p miRNA MIMAT0003167 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID00568641 mmu-miR-582-5p miRNA MIMAT0005291 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID01108983 mmu-miR-218-5p miRNA MIMAT0000663 Ipp mRNA 16351 Prediction 0.2202 Ipp RAID01176087 mmu-miR-19b-3p miRNA MIMAT0000513 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID01353976 mmu-miR-7002-3p miRNA MIMAT0027907 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID01778580 mmu-miR-216c-5p miRNA MIMAT0029888 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID02547204 mmu-miR-186-5p miRNA MIMAT0000215 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID02649835 mmu-miR-6915-5p miRNA MIMAT0027730 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID02991790 mmu-miR-19a-3p miRNA MIMAT0000651 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID03084016 mmu-miR-136-5p miRNA MIMAT0000148 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID03133828 mmu-miR-200b-3p miRNA MIMAT0000233 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID03360977 mmu-miR-200c-3p miRNA MIMAT0000657 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID03624173 mmu-miR-7232-5p miRNA MIMAT0028432 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID03791374 mmu-miR-429-3p miRNA MIMAT0001537 Ipp mRNA 16351 Prediction 0.1828 Ipp RAID03897523 mmu-miR-203-3p miRNA MIMAT0000236 Ipp mRNA 16351 Prediction 0.1828