DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Nub1; Nyren18 ATTTA 223-2067 2759-2763 Nub1; Nyren18 WWATTTAWW 223-2067 2757-2765 Nub1; Nyren18 WWWATTTAWWW 223-2067 2756-2766

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 53312 Nub1 cgaCGUUUGUAGGC-UG-ACUUUc |:||| |||:| || ||||| ucaGUAAA-AUCUGUACUUGAAAu 2 20 597 619 [mm9:5:24215582-24215604:+] 0.5499 128 0 -12.59 -0.8774 MIMAT0004526 mmu-miR-101a* 53312 Nub1 cguagucgugacacUAUUGACu ||||||| ucccuggguuuccuAUAACUGg 2 9 796 817 [mm9:5:24215781-24215802:+] 0.5303 140 7 -9.71 -0.1129 MIMAT0004529 mmu-miR-125b* 53312 Nub1 uccAGGGUUCUUGGAC-UGAACa || | ||:||| ||||| agaUCAGUAAAAUCUGUACUUGa 2 20 594 616 [mm9:5:24215579-24215601:+] 0.5499 123 0 -15.10 -1.1619 MIMAT0000152 mmu-miR-140* 53312 Nub1 ggcaCCAAGA--UGGGACACCAu || | | |::||||||| uuucGGCUAUAAAUUCUGUGGUu 2 18 19 41 [mm9:5:24215004-24215026:+] 0.6114 148 7 -18.23 -1.0995 MIMAT0004537 mmu-miR-154* 53312 Nub1 uuaUCCAGUUGGCACAUACUAa || | :| | ||||||| ccaAGCUGGA-CAAGUAUGAUu 2 20 991 1011 [mm9:5:24215976-24215996:+] 0.5014 145 7 -12.28 -0.2982 MIMAT0000249 mmu-miR-30e* 53312 Nub1 cgaCAUUUGUAGGC-UG-ACUUUc ||||| |||:| || ||||| ucaGUAAA-AUCUGUACUUGAAAu 2 20 597 619 [mm9:5:24215582-24215604:+] 0.5499 132 0 -13.10 -0.8774 MIMAT0000375 mmu-miR-297a 53312 Nub1 uguacguguacguguGUAUGUa |||||| ggauucuaaauuucuCAUACAa 2 8 644 665 [mm9:5:24215629-24215650:+] 0.5499 120 6 -8.38 -0.1308 MIMAT0000376 mmu-miR-298 53312 Nub1 cccuucuugucgGGAGGAGACGg || ||||||| ccuccucccccaCCACCUCUGCu 2 12 412 434 [mm9:5:24215397-24215419:+] 0.5051 147 7 -18.55 -0.1583 MIMAT0004626 mmu-miR-18a* 53312 Nub1 gucuuCCUCGUGAAUCCCGUCa ||:| | |||||||| uguguGGGGGA--UAGGGCAGa 2 18 1045 1064 [mm9:5:24216030-24216049:+] 0.5014 150 7 -20.92 -0.4803 MIMAT0004631 mmu-miR-29a* 53312 Nub1 gaCUUGUGGUUUU--C--UUUAGUCa ||| |::||:: | ||||||| uuGAA-AUUAAGGUUGCAAAAUCAGu 2 21 613 637 [mm9:5:24215598-24215622:+] 0.5499 144 7 -13.62 -0.8392 MIMAT0004635 mmu-miR-92a* 53312 Nub1 caUUACGGUGGUUAGGGGUGGa | |||| :| ||||||| gaACUGCCCUCCUCCCCCACCa 2 21 405 426 [mm9:5:24215390-24215411:+] 0.5051 156 7 -22.79 -0.2209 MIMAT0000569 mmu-miR-330* 53312 Nub1 agaGACGUCCGG------GACACGAAACg :||| |||| |||||||||| gucUUGCUGGCCCCCUUGCUGUGCUUUGg 2 21 1138 1166 [mm9:5:24216123-24216151:+] 0.5099 159 7 -28.79 -0.1038 MIMAT0004647 mmu-miR-338-5p 53312 Nub1 gugaGUCGUGGUCCUA-UAACAa | | || || || ||||| caagCUGGACAAGUAUGAUUGUc 2 19 992 1014 [mm9:5:24215977-24215999:+] 0.5014 122 0 -7.67 -0.2718 MIMAT0002104 mmu-miR-463* 53312 Nub1 uacuACCUGUUGUUUAA-UCCAu || || ||||| |||| aaucUGUACUUGAAAUUAAGGUu 2 19 604 626 [mm9:5:24215589-24215611:+] 0.5499 122 0 -7.09 -0.7386 MIMAT0002106 mmu-miR-465a-5p 53312 Nub1 agUGUAGUCACG-----GUAAGAUUUAu | |||||| : ||||||||| caAAAUCAGUUUAUAUGGAUUCUAAAUu 2 22 628 655 [mm9:5:24215613-24215640:+] 0.5499 152 7 -12.56 -0.9318 MIMAT0003726 mmu-miR-675-3p 53312 Nub1 ugacucgccaaucccGUAUGUc |||||| ggauucuaaauuucuCAUACAa 2 8 644 665 [mm9:5:24215629-24215650:+] 0.5499 120 6 -5.45 -0.1347 MIMAT0004820 mmu-miR-744* 53312 Nub1 ucCAACUCCAAUCACCGU-UGUc || |:|| ||| |||| ||| guGUGGGGGAUAG-GGCAGACAu 2 21 1046 1067 [mm9:5:24216031-24216052:+] 0.5014 130 0 -16.50 -0.1397 MIMAT0003731 mmu-miR-671-5p 53312 Nub1 gaggucGGGGAGG-UC--CCGAAGGa :::|||: || ||||||| acgauuUUUCUCUAAGUAGGCUUCCu 2 18 83 108 [mm9:5:24215068-24215093:+] 0.5061 147 7 -22.10 -0.4651 MIMAT0003737 mmu-miR-666-5p 53312 Nub1 ccGAGAGUGUCGAC-ACGGG-CGa ||||||| :|| ||||| || uuCUCUCACCCUUGCUGCCCUGCa 2 21 443 466 [mm9:5:24215428-24215451:+] 0.5051 135 0 -27.44 -0.2709 MIMAT0003451 mmu-miR-677 53312 Nub1 agUCUUCGAUUAGU--AGU-GACUu | :|||| ||| ||| |||| ccAAGAGCUUUUCAUUUCAGCUGAa 2 21 952 976 [mm9:5:24215937-24215961:+] 0.5090 123 0 -17.90 -0.3616 MIMAT0003461 mmu-miR-683 53312 Nub1 cucCUGUGUCGAAUGUC-GUCc |:||::| | |||| ||| ccaGGCAUGG-UAACAGCCAGa 2 19 902 922 [mm9:5:24215887-24215907:+] 0.5186 120 0 -15.09 -0.3542 MIMAT0003462 mmu-miR-684 53312 Nub1 aacugAACUUCCCUUUUga || || |||||| ucuuaUUAAAUGGAAAAaa 3 15 674 692 [mm9:5:24215659-24215677:+] 0.5499 134 0 -4.76 -0.2694 MIMAT0003469 mmu-miR-690 53312 Nub1 aaACCAACAC---UCGG---AUCGGAAa ||| |||| || | ||||||| ccUGGGUGUGGCCAGGCAGAUAGCCUUc 2 21 868 895 [mm9:5:24215853-24215880:+] 0.5186 150 7 -20.74 -0.1349 MIMAT0003480 mmu-miR-297b-5p 53312 Nub1 uguacaaguacguguGUAUGUa |||||| ggauucuaaauuucuCAUACAa 2 8 644 665 [mm9:5:24215629-24215650:+] 0.5499 120 6 -7.49 -0.1321 MIMAT0003742 mmu-miR-455 53312 Nub1 cacauaUACGGGCACCUGACg ||| :|||||||| aagacaAUG--UGUGGACUGa 2 16 1093 1111 [mm9:5:24216078-24216096:+] 0.5000 148 7 -17.91 -0.2630 MIMAT0003496 mmu-miR-706 53312 Nub1 aaaaaacucugucccAAAGAGa |||||| uauauggauucuaaaUUUCUCa 2 8 639 660 [mm9:5:24215624-24215645:+] 0.5499 120 6 -6.49 -0.1386 MIMAT0003500 mmu-miR-710 53312 Nub1 gaGUUGA--GAG-GGGUUCUGAACc :|||| || | |||||||| uaUAACUGGGUCACAGAAGACUUGc 2 21 809 833 [mm9:5:24215794-24215818:+] 0.5056 150 7 -16.45 -0.1326 MIMAT0004237 mmu-miR-742 53312 Nub1 aaAUGGGUCGUACCAC-CGAAAg |: || | || || ||||| gcUGGCCCCCUUGCUGUGCUUUg 2 21 1143 1165 [mm9:5:24216128-24216150:+] 0.5099 120 0 -11.66 -0.2334 MIMAT0004238 mmu-miR-743a 53312 Nub1 agaugagucGAACCACA-GAAAg |||| ||| |||| gcuggccccCUUGCUGUGCUUUg 2 14 1143 1165 [mm9:5:24216128-24216150:+] 0.5099 121 0 -12.26 -0.2334 MIMAT0004848 mmu-miR-883a-5p 53312 Nub1 cauuGACGAU-GAAG-AGAGUCGu || ||: | || ||||||| cuguCUCCUGUCGUCUUCUCAGCu 2 19 345 368 [mm9:5:24215330-24215353:+] 0.5051 152 7 -16.47 -0.2376 MIMAT0004856 mmu-miR-105 53312 Nub1 uggUGUUCGUAGACU---CGUGAACc |:|| ||| |: ||||||| gaaAUAAACAUGGGGAACGCACUUGa 2 21 1185 1210 [mm9:5:24216170-24216195:+] 0.5099 151 7 -14.83 -0.4704 MIMAT0004865 mmu-miR-297c 53312 Nub1 uguACAUGUACGUGUGUAUGUa | || || : | |||||| gauUCUAAAU-UUCUCAUACAa 2 20 645 665 [mm9:5:24215630-24215650:+] 0.5499 121 6 -7.49 -0.1295 MIMAT0004871 mmu-miR-465b-5p 53312 Nub1 gucuagucguggUAAGAUUUAu ||||||||| caguuuauauggAUUCUAAAUu 2 11 634 655 [mm9:5:24215619-24215640:+] 0.5499 150 7 -10.01 -0.9318 MIMAT0004873 mmu-miR-465c-5p 53312 Nub1 gucuagucgcggUAAGAUUUAu ||||||||| caguuuauauggAUUCUAAAUu 2 11 634 655 [mm9:5:24215619-24215640:+] 0.5499 150 7 -9.97 -0.9318 MIMAT0004885 mmu-miR-467c 53312 Nub1 gugUAUAUGUA---CGUGCGUGAAu ||| |||| | |||||||| gaaAUAAACAUGGGGAACGCACUUg 2 20 1185 1209 [mm9:5:24216170-24216194:+] 0.5099 162 7 -20.85 -0.3762 MIMAT0004886 mmu-miR-467d 53312 Nub1 gcgUAUAUGUACGC---GCGUGAAu ||| ||||| | ||||||| gaaAUAAACAUGGGGAACGCACUUg 2 20 1185 1209 [mm9:5:24216170-24216194:+] 0.5099 162 7 -19.57 -0.3762 MIMAT0004898 mmu-miR-654-3p 53312 Nub1 uucCACUACCAGU--CGUCUGUAu |||: || :| |||||||| uguGUGGGGGAUAGGGCAGACAUa 2 20 1045 1068 [mm9:5:24216030-24216053:+] 0.5014 158 7 -21.82 -0.2010 MIMAT0004862 mmu-miR-877* 53312 Nub1 acccuccucccucuUCUCCUGu ||||||| agacuuugucagucAGAGGACa 2 9 139 160 [mm9:5:24215124-24215145:+] 0.4340 140 7 -16.01 -0.1518 MIMAT0005833 mmu-miR-669d 53312 Nub1 ugUAUAUGUACG--U-GUGU-GUUCa || || |||| | |||| |||| aaAUUUAAAUGCUAACCACAGCAAGu 2 21 690 715 [mm9:5:24215675-24215700:+] 0.5499 126 0 -13.35 -0.8160 MIMAT0005838 mmu-miR-669j 53312 Nub1 acaAACG-UACACUC--AUAUACgu |||| | | || |||||| aggUUGCAAAAUCAGUUUAUAUGga 3 20 622 646 [mm9:5:24215607-24215631:+] 0.5499 129 0 -8.90 -0.1515 MIMAT0005840 mmu-miR-669i 53312 Nub1 cauacgUACACACAUAUACgu || || |||||| ugcaaaAUCAGUUUAUAUGga 3 16 626 646 [mm9:5:24215611-24215631:+] 0.5499 131 0 -7.29 -0.1515 MIMAT0005844 mmu-miR-466f 53312 Nub1 uguacgUGUACGUGUGU-GUGCa |||| | |||| |||| gggcagACAUAC-CACAGCACGa 2 17 1058 1079 [mm9:5:24216043-24216064:+] 0.5014 122 0 -16.05 -0.1880 MIMAT0005847 mmu-miR-1190 53312 Nub1 cugucuccccuUGGAGUCGACu |::||||||| aagagcuuuucAUUUCAGCUGa 2 12 954 975 [mm9:5:24215939-24215960:+] 0.5090 147 7 -19.95 -0.7737 MIMAT0007878 mmu-miR-1894-3p 53312 Nub1 gagggaagugggagAGGGAACg ||||||| gcaggcggugcagaUCCCUUGa 2 9 544 565 [mm9:5:24215529-24215550:+] 0.5499 140 7 -14.18 -0.3885 MIMAT0009405 mmu-miR-1941-5p 53312 Nub1 uucGGAGACAUGGUCGU-AGAGGGa |: || | :||| | |||||| gauCUGCUUUCUCAGGACUCUCCCu 2 22 776 800 [mm9:5:24215761-24215785:+] 0.5549 129 6 -21.50 -0.1143 MIMAT0009439 mmu-miR-1966 53312 Nub1 cugaGAGAGGACUCGG-UCGA-GGGAa ||: :|| | || ||| |||| caagCUUCUCUCACCCUUGCUGCCCUg 2 22 438 464 [mm9:5:24215423-24215449:+] 0.5051 120 0 -21.75 -0.1218 MIMAT0009441 mmu-miR-1968 53312 Nub1 ucAGGUGGUAG--GAAUUGUCGA-CGu ||: |::|| ||| ||||| || ugUCUCCUGUCGUCUUCUCAGCUAGCc 2 23 346 372 [mm9:5:24215331-24215357:+] 0.5051 125 0 -20.66 -0.1484 MIMAT0009445 mmu-miR-1274a 53312 Nub1 accgcggacuugUCCCUGGACu ||||||||| uacugauagccaAGGGACCUGa 2 11 748 769 [mm9:5:24215733-24215754:+] 0.5642 150 7 -25.81 -0.4087 MIMAT0011210 mmu-miR-2134 53312 Nub1 cguGGGGCA-AAGGGUUCUg | |:|| ||||||||| ugcCACUGUGUUCCCAAGAg 2 17 939 958 [mm9:5:24215924-24215943:+] 0.5090 159 7 -22.46 -0.3096 MIMAT0015640 mmu-miR-3470a 53312 Nub1 ggucggaccAG-AUGUUUCACu || ||||||||| cuaaauuucUCAUACAAAGUGa 2 13 649 670 [mm9:5:24215634-24215655:+] 0.5499 151 7 -15.45 -1.2261 MIMAT0015643 mmu-miR-3472 53312 Nub1 ccaaggAAGGU-CGAAGACCGAUAau | |:| |:||| |||||| aauaagUGCUACGUUUC-GGCUAUaa 3 20 6 30 [mm9:5:24214991-24215015:+] 0.6114 136 0 -15.87 -0.1918 MIMAT0015646 mmu-miR-3474 53312 Nub1 cuuagGUGCAGAGGAGG-GUCCc :| | :|||||| |||| cuaagUAGGCUUCCUCCUCAGGu 2 18 94 116 [mm9:5:24215079-24215101:+] 0.4793 125 0 -21.15 -0.1438 MIMAT0000140 mmu-miR-128 53312 Nub1 uuuCUCUGGCCA-AGUGACACu |:| | || ||||||| uguGGGCCAAGUGCCACUGUGu 2 19 928 949 [mm9:5:24215913-24215934:+] 0.5186 145 7 -17.69 -0.1314 MIMAT0000148 mmu-miR-136 53312 Nub1 gguagUAGUUUUGUUUACCUca ||| | :||||||| ugaaaAUCUUAUUAAAUGGAaa 3 18 668 689 [mm9:5:24215653-24215674:+] 0.5499 137 0 -10.06 -0.2884 MIMAT0000151 mmu-miR-140 53312 Nub1 gaUGGUAUCCCAUUUUG-GUGAc | |||:||| ||| |||| uaAACAUGGGG---AACGCACUu 2 21 1189 1208 [mm9:5:24216174-24216193:+] 0.5099 120 0 -16.84 -0.2094 MIMAT0000153 mmu-miR-141 53312 Nub1 ggUAGAAAUGGUCUGUCACAAu ||| | ||||||||| ugAUCGAAAAAUGACAGUGUUu 2 21 563 584 [mm9:5:24215548-24215569:+] 0.5499 152 7 -16.00 -0.9391 MIMAT0000210 mmu-miR-181a 53312 Nub1 ugaGUGGCUGUCGC---AACUUACAa ||: |: | || |||||||| aaaCAUGGGGAACGCACUUGAAUGUc 2 21 1190 1215 [mm9:5:24216175-24216200:+] 0.5099 151 7 -15.49 -0.1915 MIMAT0000236 mmu-miR-203 53312 Nub1 gaUCACCAGGAUUUGUAAAGUg || | |::| ||||||| caAGAGCUUUU---CAUUUCAg 2 21 953 971 [mm9:5:24215938-24215956:+] 0.5090 144 7 -9.20 -0.2500 MIMAT0000237 mmu-miR-204 53312 Nub1 ucCGUAUCCUACUGUUUCCCUu | | || | : ||||||| gaGGACAGUCUAGGAAAGGGAa 2 21 154 175 [mm9:5:24215139-24215160:+] 0.4610 148 7 -17.61 -0.1282 MIMAT0000385 mmu-miR-106a 53312 Nub1 gaUGGACGUGACAAUCGUGAAAc :|| | |||| ||||||| uaGCCAUC-CUGU--GCACUUUg 2 22 368 387 [mm9:5:24215353-24215372:+] 0.5051 148 7 -18.28 -0.1030 MIMAT0000386 mmu-miR-106b 53312 Nub1 uagacguGACAGUCGUGAAAu |||| ||||||| agccaucCUGU--GCACUUUg 2 15 369 387 [mm9:5:24215354-24215372:+] 0.5051 147 7 -13.74 -0.1030 MIMAT0000387 mmu-miR-130b 53312 Nub1 uacgggaaaGUAGUA-ACGUGAc |||| | |||||| ucagcuagcCAUCCUGUGCACUu 2 14 363 385 [mm9:5:24215348-24215370:+] 0.5051 121 6 -14.69 -0.1024 MIMAT0000519 mmu-miR-200a 53312 Nub1 ugUAGCAAUGGUCUGUCACAAu |||| | ||||||||| ugAUCGAAAAAUGACAGUGUUu 2 21 563 584 [mm9:5:24215548-24215569:+] 0.5499 160 7 -18.84 -0.9359 MIMAT0000529 mmu-miR-20a 53312 Nub1 gauggacGUGAUAUUCGUGAAAu ||: |: ||||||| agcuagcCAUCCUGUGCACUUUg 2 17 365 387 [mm9:5:24215350-24215372:+] 0.5051 148 7 -16.30 -0.1113 MIMAT0000533 mmu-miR-26a 53312 Nub1 ucggaUAGGACCUAAUGAACUu | :||| ||||||| aguaaAAUCUG---UACUUGAa 2 18 599 617 [mm9:5:24215584-24215602:+] 0.5499 141 7 -13.07 -0.8960 MIMAT0000534 mmu-miR-26b 53312 Nub1 uggaUAGGACUUAAUGAACUu | :||| ||||||| guaaAAUCUG---UACUUGAa 2 18 600 617 [mm9:5:24215585-24215602:+] 0.5499 141 7 -12.36 -0.8960 MIMAT0000540 mmu-miR-93 53312 Nub1 gauggacgugcuuguCGUGAAAc ||||||| agcuagccauccuguGCACUUUg 2 9 365 387 [mm9:5:24215350-24215372:+] 0.5051 140 7 -17.09 -0.1124 MIMAT0000597 mmu-miR-346 53312 Nub1 ucucCGUCCGUGAGCCCGUCUGu |::|| : | |||||||| uuguGUGGGGGAUAGGGCAGACa 2 20 1044 1066 [mm9:5:24216029-24216051:+] 0.5014 159 7 -24.94 -0.4083 MIMAT0000649 mmu-miR-17 53312 Nub1 gauggacGUGACAUUCGUGAAAc ||: |: ||||||| agcuagcCAUCCUGUGCACUUUg 2 17 365 387 [mm9:5:24215350-24215372:+] 0.5051 148 7 -20.40 -0.1113 MIMAT0000661 mmu-miR-214 53312 Nub1 ugACGGACAGACACGGACGACa |||| |||| ||||||| uuUGCC-CACUGU-CCUGCUGc 2 21 384 403 [mm9:5:24215369-24215388:+] 0.5051 156 7 -25.50 -0.1383 MIMAT0000662 mmu-miR-216a 53312 Nub1 aguGUCAACGGUCGACUC-UAAu ||||| || |||| ||| uccCAGUU--CAUGUGAGCAUUc 2 20 1238 1258 [mm9:5:24216223-24216243:+] 0.5010 120 0 -9.94 -0.1366 MIMAT0000668 mmu-miR-211 53312 Nub1 ucCGUUUCCUACUGUUUCCCUu | | || | : ||||||| gaGGACAGUCUAGGAAAGGGAa 2 21 154 175 [mm9:5:24215139-24215160:+] 0.4610 148 7 -17.88 -0.1282 MIMAT0000673 mmu-miR-181b 53312 Nub1 uggguggCUGUCGU-UACUUACAa || ||| ||||||| acaugggGAACGCACUUGAAUGUc 2 17 1192 1215 [mm9:5:24216177-24216200:+] 0.5099 147 7 -14.06 -0.1915 MIMAT0000674 mmu-miR-181c 53312 Nub1 ugagUGGCUGUCCAACUUACAa | || || |||||||| ggggAACG-CA-CUUGAAUGUc 2 19 1196 1215 [mm9:5:24216181-24216200:+] 0.5099 146 7 -10.44 -0.1915 MIMAT0000704 mmu-miR-361 53312 Nub1 caugggGACC-UCUAA-GACUAUu |||| || || |||||| ucuagaCUGGAAGCUUACUGAUAg 2 17 733 756 [mm9:5:24215718-24215741:+] 0.5734 127 6 -16.70 -0.2650 MIMAT0001076 mmu-miR-384-3p 53312 Nub1 uaaCACUUGUUAAAGAUCCUUa | |:|||: |||||||| ucaGAGGACAG--UCUAGGAAa 2 20 151 170 [mm9:5:24215136-24215155:+] 0.4610 156 7 -17.20 -0.1941 MIMAT0003169 mmu-miR-539 53312 Nub1 ugUGUGGUUCCUA-UUAAAGAGg |:|: :| | |||||||| uuAUAUGGAUUCUAAAUUUCUCa 2 21 638 660 [mm9:5:24215623-24215645:+] 0.5499 147 7 -12.27 -1.1796 MIMAT0003169 mmu-miR-539 53312 Nub1 ugugugGUUCCUAUUAA-AGAGg |||| ||:||| |||| gcuggaCAAGUAUGAUUGUCUCu 2 17 995 1017 [mm9:5:24215980-24216002:+] 0.5014 132 0 -13.89 -0.4574 MIMAT0003172 mmu-miR-542-3p 53312 Nub1 aaAGUCAAUAGUUA-GACA-GUGu |||| || | || |||| ||| ucUCAGCUAGCCAUCCUGUGCACu 2 21 361 384 [mm9:5:24215346-24215369:+] 0.5051 131 0 -12.72 -0.1236 MIMAT0003187 mmu-miR-20b 53312 Nub1 gauggacGUGAUACUCGUGAAAc ||: || ||||||| agcuagcCAUCCUGUGCACUUUg 2 17 365 387 [mm9:5:24215350-24215372:+] 0.5051 152 7 -18.73 -0.1113 MIMAT0003893 mmu-miR-761 53312 Nub1 acACA-GUCAAA---GUG---GGACGACg ||| || ||| ||| ||||||| ccUGUGCACUUUGCCCACUGUCCUGCUGc 2 21 375 403 [mm9:5:24215360-24215388:+] 0.5051 149 7 -20.80 -0.1477 MIMAT0004324 mmu-miR-181d 53312 Nub1 uggGUGGCUGUUGU-U--ACUUACAa ||: |: |||: | ||||||| aaaCAUGGGGAACGCACUUGAAUGUc 2 21 1190 1215 [mm9:5:24216175-24216200:+] 0.5099 150 7 -17.66 -0.1933

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G043930 Nub1 Mus musculus 53312

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Nub1 mmu-miR-204 beg:158 end:176 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& |. ||||| ||||||| &5' --GTCTAGGA-----AAGGGAA 3' Nub1 mmu-miR-211 beg:158 end:176 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& |. |||| ||||||| &5' --GTCTAGGA-----AAGGGAA 3' Nub1 mmu-miR-710 beg:816 end:833 pic:3' GAGTTGAGAG-GGGTTCTGAACC 5'& || | |||||||| &5' --------TCACAGAAGACTTG- 3' Nub1 mmu-miR-877star beg:150 end:161 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& |||||||| &5' --------------AGAGGACA 3' Nub1 mmu-miR-18astar beg:1045 end:1064 pic:3' GTCTTCCTCGTGAATCCCGTCA 5'& | .||.| |||||||| &5' --GTGGGGGA---TAGGGCAG- 3' Nub1 mmu-miR-539 beg:641 end:660 pic:3' TGTGTGGTTCCTA----TTAAAGAGG 5'& |||| |||||||| &5' ---------GGATTCTAAATTTCTC- 3' Nub1 mmu-miR-3470a beg:655 end:671 pic:3' GGTCGGACCAG-ATGTTTCACT 5'& || |||||||||| &5' ---------TCATACAAAGTGA 3' Nub1 mmu-miR-2141 beg:288 end:299 pic:3' TTGAAAAGACTGTGGAGGA 5'& |||||||| &5' -----------CACCTCCT 3' Nub1 mmu-miR-759 beg:227 end:241 pic:3' CAGTTTTAACAAAC-GTGAGACG 5'& || |||||||. &5' ------------TGCCACTCTGT 3' Nub1 mmu-miR-485 beg:514 end:532 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& || .| ||||||||| &5' -----CAG-GCTGCCAGCCTC- 3' Nub1 mmu-miR-151-3p beg:148 end:167 pic:3' GGAGT-TCCTCGGAGTCAGATC 5'& ||| |||| |||||||| &5' --TCAGAGGA----CAGTCTAG 3' Nub1 mmu-miR-30bstar beg:209 end:228 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& ||..| | |||||||| &5' ----TAGGC--CTGCATCCCAG 3' Nub1 mmu-miR-206 beg:465 end:490 pic:3' GGTGTGTGAA--GGAATGTAAGGT 5'& ||| ||.| .||| ||||||| &5' -CACCCATTGCATCTT-CATTCCA 3' Nub1 mmu-miR-206 beg:949 end:971 pic:3' GGTGTGTGAAGGAATGTAAGGT 5'& ||| .|||.. ||||.|| &5' CCAAGAGCTTTT---CATTTCA 3' Nub1 mmu-miR-92astar beg:280 end:296 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& ||||| |||||||| &5' ------CCACC---CCCCACCT 3' Nub1 mmu-miR-1982star beg:521 end:538 pic:3' GGAGGGGTCCT-GGGAGGGTT 5'& |||| |||||||| &5' -----CCAGCCTCCCTCCCA- 3' Nub1 mmu-miR-298 beg:421 end:435 pic:3' CCCTTCTTGTCGGGAGGAGACGG 5'& || |||||||. &5' ------------CCACCTCTGCT 3' Nub1 mmu-miR-467c beg:1190 end:1210 pic:3' GTGTATATGTACG---TGCGTGAAT 5'& ||||| ||||||||. &5' -------ACATGGGGAACGCACTTG 3' Nub1 mmu-miR-384-3p beg:153 end:170 pic:3' TAACACTTGTTAAAGATCCTTA 5'& |.||| |||||||| &5' -----GGACAG--TCTAGGAA- 3' Nub1 mmu-miR-1903 beg:832 end:843 pic:3' ACAGAGTCCTTCTTCTTCTTCC 5'& |||||||| &5' --------------GAAGAAGG 3' Nub1 mmu-miR-20b beg:372 end:388 pic:3' GATGGACGTGATACTCGTGAAAC 5'& ||||. |||||||| &5' ---CCTGT-------GCACTTTG 3' Nub1 mmu-miR-486 beg:107 end:123 pic:3' GAGCCCCGTCGAGT-CATGTCCT 5'& |||| |||||||. &5' ----------CTCAGGTACAGGG 3' Nub1 mcmv-miR-m01-1 beg:342 end:365 pic:3' GGCA-AGCTGCAATAAGAGGAGA 5'& |.|| || .|| |||.||| &5' CTGTCTCC-TGTCG-TCTTCTC- 3' Nub1 mcmv-miR-M23-2 beg:1273 end:1295 pic:3' GGCGAACT-GGCTC----CGGGGGTA 5'& ||| . ||| ||||||| &5' -----TGAGTGGAGTATAGCCCCCA- 3' Nub1 mcmv-miR-M23-2 beg:405 end:424 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& |.|| || |||||| &5' CTGCCCT-CCT---CCCCCA- 3' Nub1 mmu-let-7e beg:516 end:537 pic:3' TTGATATGTTGGAGGATGGAGT 5'& ..||. ||.||||| || | &5' GGCTGC-CAGCCTCCCTCC-C- 3' Nub1 mmu-miR-101a beg:479 end:499 pic:3' AAGTCAATAGTG----TCATGACAT 5'& |||. |||.||||. &5' --------TCATTCCAAGTGCTGTG 3' Nub1 mmu-miR-105 beg:1190 end:1210 pic:3' TGGTGTTCGTAGACTCGTGAACC 5'& || .| | | ||||||| &5' --CATGGGGAAC---GCACTTG- 3' Nub1 mmu-miR-106a beg:367 end:388 pic:3' GATGGACGTGACAATCGTGAAAC 5'& .|| | |||| |||||||| &5' --GCCATC-CTGT--GCACTTTG 3' Nub1 mmu-miR-1 beg:1250 end:1260 pic:3' TATGTATGAAGAAATGTAAGGT 5'& .||||||| &5' --------------GCATTCCA 3' Nub1 mmu-miR-1 beg:472 end:490 pic:3' TATGTATGAAGAAATGTAAGGT 5'& |.| |||| ||||||| &5' -----TGCATCTT--CATTCCA 3' Nub1 mmu-miR-1188 beg:1318 end:1342 pic:3' AGGAC--CGGGTTGGAGTGTGGT 5'& .||| || ||.|| |||. . &5' -TCTGCAGCACAGCC-CACGTTG 3' Nub1 mmu-miR-1190 beg:953 end:976 pic:3' CTGTCTCCCCT--TGGAGTCGACT 5'& |||| |..|||||||| &5' ---AGAGCTTTTCATTTCAGCTGA 3' Nub1 mmu-miR-1195 beg:1070 end:1092 pic:3' ACTCGTCCGACCGGAGCTTGAGT 5'& |||| | |.|| |..|||| &5' --AGCACGA--GTCTGGGGCTCA 3' Nub1 mmu-miR-1196 beg:297 end:315 pic:3' TCCGTCTCCGTCCATCTAAA 5'& |||||| ||.|||||| &5' AGGCAG-GGTAGGTAG---- 3' Nub1 mmu-miR-1199 beg:1072 end:1094 pic:3' GGCGCGCT--GGCCCTGAGTCT 5'& || ||| |.|||.|||||| &5' --GCACGAGTCTGGGGCTCAGA 3' Nub1 mmu-miR-1224 beg:198 end:223 pic:3' GAGGT-GGAGG-GGTCAGGA-GTG 5'& ||. ||||| |.|| ||| ||. &5' --CCGTCCTCCTCTAGGCCTGCAT 3' Nub1 mmu-miR-124star beg:1240 end:1257 pic:3' TAGTTCCAGGCGACACTTGTGC 5'& ||.| |||||.||. &5' ------GTTCA-TGTGAGCAT- 3' Nub1 mmu-miR-1274a beg:323 end:343 pic:3' ACCGCGGACTTGTC-CCTGGACT 5'& |.||| ||| ||.||||. &5' ----GTCTG--CAGAGGGCCTGG 3' Nub1 mmu-miR-1274a beg:753 end:770 pic:3' ACCGCGGACTTGTCCCTGGACT 5'& ||| |||||||||| &5' ----GCCA----AGGGACCTGA 3' Nub1 mmu-miR-1274a beg:830 end:848 pic:3' ACCGCGGACTTGTCCCTGGACT 5'& ||||| | ||.|||| &5' ------CTGAAGAAGGGCCTG- 3' Nub1 mmu-miR-128 beg:928 end:949 pic:3' TTTCTCTGGC-CAA-GTGACACT 5'& .|.|| || ||||||| &5' ----GGGCCAAGTGCCACTGTG- 3' Nub1 mmu-miR-139-5p beg:488 end:501 pic:3' GACCTCTGTGCACGTGACATCT 5'& | ||||.|| &5' ------------GTGCTGTGGA 3' Nub1 mmu-miR-141 beg:562 end:584 pic:3' GGTAGAAATGGTCTGTCACAAT 5'& ||| ||||||||| &5' --ATCGAAAAATGACAGTGTT- 3' Nub1 mmu-miR-143 beg:953 end:971 pic:3' CTCGATGTCACGAAGTAGAGT 5'& ||||| .|||||.||| &5' GAGCT------TTTCATTTCA 3' Nub1 mmu-miR-145star beg:250 end:267 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||||.| ||||.| &5' ------CAGTGTAA-CAGGGA- 3' Nub1 mmu-miR-145star beg:151 end:170 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& .||.|||| ||.||||| &5' -GAGGACAG----TCTAGGAA- 3' Nub1 mmu-miR-149 beg:901 end:923 pic:3' CCCTCACTTCTGTGCC----TCGGTCT 5'& ||.||.|| ||||||| &5' --------AGGCATGGTAACAGCCAGA 3' Nub1 mmu-miR-150 beg:1264 end:1275 pic:3' GTGACCATGTTCCCAACCCTCT 5'& |||||||| &5' -------------GTTGGGAG- 3' Nub1 mmu-miR-151-3p beg:620 end:641 pic:3' GGAGTTCCT-CGG---AGTCAGATC 5'& |||| || |||||.|| &5' ----AAGGTTGCAAAATCAGTTTA- 3' Nub1 mmu-miR-154 beg:874 end:894 pic:3' GCTTCCGTTGTGCCTATTGGAT 5'& ||| | .| ||||.||| &5' ----GGCCAGGCAGATAGCCT- 3' Nub1 mmu-miR-15a beg:386 end:406 pic:3' GTGTTTGGTAATAC-ACGACGAT 5'& ||| |.| |||||||. &5' ------CCACTGTCCTGCTGCTG 3' Nub1 mmu-miR-15b beg:386 end:406 pic:3' ACATTTGGT-ACTACACGACGAT 5'& ||| || |||||||. &5' ------CCACTGTCCTGCTGCTG 3' Nub1 mmu-miR-16 beg:384 end:406 pic:3' GCGGTTATAAATGCACGACGAT 5'& ||| | |||||||. &5' -GCCCACTGT--CCTGCTGCTG 3' Nub1 mmu-miR-17 beg:367 end:388 pic:3' GATGGACGTGACATTCGTGAAAC 5'& .|| | |||| |||||||| &5' --GCCATC-CTGT--GCACTTTG 3' Nub1 mmu-miR-1893 beg:363 end:382 pic:3' GCTCCGCAGGTCGC--GGGCGCGG 5'& | |.||| ||.|.|| &5' ------G-CTAGCCATCCTGTGC- 3' Nub1 mmu-miR-18a beg:459 end:483 pic:3' GATAGACGTGATCT---ACGTGGAAT 5'& |||||. ||||.||| &5' ----CTGCATCACCCATTGCATCTT- 3' Nub1 mmu-miR-18b beg:462 end:483 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& .|| ||| ||||.||| &5' ---GCATCACCCATTGCATCTT- 3' Nub1 mmu-miR-1902 beg:464 end:483 pic:3' TTCAGTACGGATGACGTGGAGA 5'& ||| || |.||||.||. &5' ---TCA--CCCATTGCATCTT- 3' Nub1 mmu-miR-1928 beg:866 end:880 pic:3' CTCGACCGTTACATCGA 5'& |||| .|||.|| &5' ---CTGG--GTGTGGC- 3' Nub1 mmu-miR-1933-3p beg:1129 end:1144 pic:3' TATCAGTGTGACTACCAGGACC 5'& |||||||||.|| &5' ---------CTGATGGTCTTG- 3' Nub1 mmu-miR-1935 beg:418 end:435 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& || ||| |||||||. &5' ------CCACCA-CCTCTGCT- 3' Nub1 mmu-miR-1938 beg:520 end:542 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& .|| |.| | |||||||| &5' -GCC-AGCCTCCC-TCCCACCG 3' Nub1 mmu-miR-193 beg:1336 end:1357 pic:3' TGACCCTGAAACATCCGGTCAA 5'& .|||| ||||||.|||.| &5' -TTGGGCCTTTGTGGGCTA--- 3' Nub1 mmu-miR-1940 beg:767 end:797 pic:3' TTGACG--AGGTGGAAGAGTCAGGAGGTA 5'& .|.||. || |.||||||| |||. &5' GATTGTGATCTGCTTTCTCAGGACTCT-- 3' Nub1 mmu-miR-1943 beg:515 end:535 pic:3' AGGTCC-ACGGGTCTAGGAGGGAA 5'& |||| |||| ||||||| &5' --CAGGCTGCCAG---CCTCCCT- 3' Nub1 mmu-miR-195 beg:384 end:406 pic:3' CGGTTATAAAGACACGACGAT 5'& ||| || |||||||. &5' GCCCACTG-TCC-TGCTGCTG 3' Nub1 mmu-miR-1953 beg:767 end:790 pic:3' GTCTTCGGACTCT-TGAAAGGGT 5'& ||| . ||| .|||||.|| &5' -AGAT-TGTGATCTGCTTTCTCA 3' Nub1 mmu-miR-1954 beg:1308 end:1328 pic:3' TTGTCCCAGAGTGAGACGTCA 5'& .|||| .|||||||| &5' ---GGGGTGCAGCTCTGCAG- 3' Nub1 mmu-miR-1954 beg:572 end:596 pic:3' TTGTCCCAGAG--TGAGACGTCA 5'& .|||| ||.|. .|||| ||| &5' GACAGTGTTTTATGCTCT-CAG- 3' Nub1 mmu-miR-1955 beg:322 end:347 pic:3' TTTTC-GACGTCACGTAGGACCCTGA 5'& ||.| |||||| | . ||||||||| &5' -AAGGTCTGCAGAGGG-CCTGGGACT 3' Nub1 mmu-miR-1955 beg:1071 end:1090 pic:3' TTTTCGACGTCACGTA---GGACCCTGA 5'& ||| .|||||.|| &5' ------------GCACGAGTCTGGGGCT 3' Nub1 mmu-miR-1957 beg:930 end:947 pic:3' CAGTATACGAG--ATGGTGAC 5'& || |.|||||| &5' -------GCCAAGTGCCACTG 3' Nub1 mmu-miR-1959 beg:203 end:226 pic:3' GAGGTGACTC-GATGTAGGGG 5'& |||| || | ||.|||||| &5' CTCCTCTAGGCCTGCATCCC- 3' Nub1 mmu-miR-1961 beg:716 end:735 pic:3' AAGATTGATGATGGAGT 5'& ||.|||.|| |.||| &5' TTTTAATTAACATCTC- 3' Nub1 mmu-miR-1962 beg:511 end:532 pic:3' TACACAGGGTC-ACGGTCGGAGA 5'& | | .| |||||||||| &5' ----GGACAGGCTGCCAGCCTC- 3' Nub1 mmu-miR-1962 beg:838 end:857 pic:3' TACACAGGGTCACGGTCGGAGA 5'& | || ||.||||||.| &5' ----GGGCC--TGTCAGCCTTT 3' Nub1 mmu-miR-1971 beg:839 end:858 pic:3' AGAGTCGG---GTCGGAAATG 5'& .||| ||||||||. &5' ----GGCCTGTCAGCCTTTG- 3' Nub1 mmu-miR-1971 beg:963 end:982 pic:3' AGAGTCGGG-TCGGAAATG 5'& |.|||||. |||||| &5' TTTCAGCTGAAGCCTT--- 3' Nub1 mmu-miR-1982star beg:779 end:800 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& |.|.|.||||||.||||| &5' CTTTCTCAGGACTCTCCC-- 3' Nub1 mmu-miR-200a beg:562 end:584 pic:3' TGTAGCAATGGTCTGTCACAAT 5'& |||| ||||||||| &5' --ATCGAAAAATGACAGTGTT- 3' Nub1 mmu-miR-206 beg:1250 end:1260 pic:3' GGTGTGTGAAGGAATGTAAGGT 5'& .||||||| &5' --------------GCATTCCA 3' Nub1 mmu-miR-20a beg:372 end:388 pic:3' GATGGACGTGATATTCGTGAAAT 5'& ||||. |||||||. &5' ---CCTGT-------GCACTTTG 3' Nub1 mmu-miR-2134 beg:935 end:958 pic:3' CGTGG-GGCA-AAGGGTTCTG 5'& | || |.|| ||||||||| &5' GTGCCACTGTGTTCCCAAGA- 3' Nub1 mmu-miR-2140 beg:593 end:615 pic:3' TGGTGGTTCTAGACGTGGA 5'& |.|| .|| |||||.||.| &5' ATCAGTAAAATCTGTACTT 3' Nub1 mmu-miR-2140 beg:453 end:469 pic:3' TGGTGGTTCTAGACGTGGA 5'& .| || |||||.| &5' GCTGCC-----CTGCATC- 3' Nub1 mmu-miR-214 beg:382 end:403 pic:3' TGACGGACAGACACGGACGACA 5'& .|||| |||| ||||||| &5' -TTGCCCA-CTGT-CCTGCTG- 3' Nub1 mmu-miR-2145 beg:449 end:466 pic:3' TTGGTCCGGGCTGGGACGA 5'& || ||. .|||||| &5' --CCTTGCT--GCCCTGC- 3' Nub1 mmu-miR-214star beg:501 end:522 pic:3' CGTGTCGTTCACA-TCTGTCCGT 5'& |||||| || .||||||| &5' ---CAGCAA-TGACGGACAGGC- 3' Nub1 mmu-miR-219 beg:153 end:164 pic:3' TCTTAACGCAAACCTGTTAGT 5'& |||||.|| &5' ------------GGACAGTC- 3' Nub1 mmu-miR-222 beg:913 end:929 pic:3' TGGGTCATCGGTCTACATCGA 5'& ||||||||||.|. &5' -------AGCCAGATGTGGT- 3' Nub1 mmu-miR-24 beg:802 end:822 pic:3' GACAAGGACGACTTGACTCGGT 5'& ||||| |||||.|.|| &5' ---TTCCTAT--AACTGGGTCA 3' Nub1 mmu-miR-24-2star beg:294 end:314 pic:3' TGACAAAGTCGAGTCATCCGTG 5'& ||| .|| .|||||.| &5' -CTGA---GGCAGGGTAGGTA- 3' Nub1 mmu-miR-26a beg:596 end:618 pic:3' TCGGA-TAGGACCTAATGAACTT 5'& ||. |||. |||||||| &5' AGTAAAATCTG----TACTTGAA 3' Nub1 mmu-miR-26b beg:602 end:618 pic:3' TGGATAGGACTTAATGAACTT 5'& |||. |||||||| &5' ----ATCTG----TACTTGAA 3' Nub1 mmu-miR-26bstar beg:143 end:162 pic:3' CTCGGTTCATTACCTCTTGTCC 5'& |.| ||| |||.|||| &5' --GTC-AGTCA--GAGGACAG- 3' Nub1 mmu-miR-2861 beg:405 end:423 pic:3' GGCGGGCGGCGGTCCGGGG 5'& |.|||| || || ||| &5' CTGCCCTCCTCC---CCC- 3' Nub1 mmu-miR-291b-3p beg:375 end:387 pic:3' TGTTTGTTTTACCTACGTGAAA 5'& .|||||||| &5' -------------GTGCACTTT 3' Nub1 mmu-miR-296-5p beg:1069 end:1091 pic:3' TGTCCTAACTCCC-CCCCGGGA 5'& |||| ||| |||||.| &5' ACAGCAC-GAGTCTGGGGCTC- 3' Nub1 mmu-miR-3099star beg:1294 end:1313 pic:3' GTTCCCGACCTTCCTTCGACC 5'& || |||.||||| &5' -----GCAGCACGGAGGCTGG 3' Nub1 mmu-miR-30astar beg:724 end:746 pic:3' CGACGTTTGTAGG---CTGACTTTC 5'& ||||||. |||||.||| &5' ------AACATCTCTAGACTGGAAG 3' Nub1 mmu-miR-30c-1star beg:434 end:451 pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& .||| |.||||.|| &5' -------GCAAGCTTCTCTCA- 3' Nub1 mmu-miR-30c-2star beg:937 end:955 pic:3' TCTCATTTGTCGGAA----GAGGGTC 5'& ||| .||||| &5' ----------GCCACTGTGTTCCCA- 3' Nub1 mmu-miR-30c-2star beg:432 end:451 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& ||. || ||||||.|| &5' ---GTGCA-AG-CTTCTCTCA- 3' Nub1 mmu-miR-30estar beg:724 end:746 pic:3' CGACATTTGTAGG---CTGACTTTC 5'& ||||||. |||||.||| &5' ------AACATCTCTAGACTGGAAG 3' Nub1 mmu-miR-31 beg:57 end:79 pic:3' GTCGATACGGTCGTAGAACGGA 5'& || ||| | ||||||.| &5' ---CTTTGCGTTCCTCTTGCTT 3' Nub1 mmu-miR-322 beg:385 end:406 pic:3' AGGTTTTGTACTTAACGACGAC 5'& || || || |||||||| &5' -CCC--AC-TGTCCTGCTGCTG 3' Nub1 mmu-miR-324-3p beg:534 end:554 pic:3' TCGTCGTGG-ACC--CCGTCACC 5'& |||| ||| |||.||| &5' -----CACCGTGGCAGGCGGTG- 3' Nub1 mmu-miR-324-5p beg:1297 end:1318 pic:3' TGTGGTTACGGGATCCCCTACGC 5'& .||| .| ||. |||.||| &5' GCACGGAGGCT----GGGGTGC- 3' Nub1 mmu-miR-327 beg:65 end:84 pic:3' TAGGAGTACGGGGAGTTCA 5'& ||||| |||...|||| &5' -TCCTCTTGCTTTTCAA-- 3' Nub1 mmu-miR-327 beg:100 end:117 pic:3' TAGGAGTACGGGGAGTTCA 5'& |.|| |.|||||.|| &5' --CTTC---CTCCTCAGGT 3' Nub1 mmu-miR-330star beg:1140 end:1166 pic:3' AGAGACGTCCGGG------ACACGAAACG 5'& .||| ||||| ||||||||| &5' ---TTGCTGGCCCCCTTGCTGTGCTTTG- 3' Nub1 mmu-miR-331-5p beg:332 end:355 pic:3' CCTAGGGACCCTGGTAT-GGATC 5'& ||. ||||||||..| |||. &5' GGG--CCTGGGACTGTCTCCTG- 3' Nub1 mmu-miR-337-3p beg:955 end:977 pic:3' TCCGT--AGTATATCCTCGACTT 5'& || |||| ||||||| &5' --GCTTTTCATTTC--AGCTGAA 3' Nub1 mmu-miR-339-5p beg:104 end:124 pic:3' GCACTCGAGGACCTCC-TGTCCCT 5'& ||||| ||| ||||||| &5' ------CTCCTC-AGGTACAGGGA 3' Nub1 mmu-miR-346 beg:1045 end:1067 pic:3' TCTCCGTCCGTGAGCCCGTCTGT 5'& | || . ||||||||| &5' ----GTGGGGGATAGGGCAGACA 3' Nub1 mmu-miR-3470a beg:177 end:199 pic:3' GGTCGGACC-AGATGTTTCACT 5'& ||||||| | |||.| ||| &5' CCAGCCTAGCTCTGCT--GTG- 3' Nub1 mmu-miR-3470b beg:177 end:199 pic:3' GGTCGGACC-AGATGTCTCACT 5'& ||||||| | |||.| ||| &5' CCAGCCTAGCTCTGCT--GTG- 3' Nub1 mmu-miR-3470b beg:1259 end:1278 pic:3' GGTCGGAC-CAGATGTCTCACT 5'& .||| ||. .|||||| &5' ----TCTGTGTTG--GGAGTGA 3' Nub1 mmu-miR-3473 beg:190 end:210 pic:3' CCGACTCGG--TAGAGAGGT 5'& |||| ||| .|| |||| &5' -GCTGTGCCCCGTC-CTCC- 3' Nub1 mmu-miR-3475 beg:999 end:1020 pic:3' AAGTTTGGTAC--ACGGAGGTCT 5'& || .||| ||.|||.|| &5' ----AAGTATGATTGTCTCTAG- 3' Nub1 mmu-miR-34a beg:511 end:527 pic:3' TGTTGGTCGATTCTG--TGACGGT 5'& .||| .|||||| &5' -----------GGACAGGCTGCCA 3' Nub1 mmu-miR-34a beg:212 end:235 pic:3' TGTTGGTCGATTC-TGTGACGGT 5'& ..|| || | ||||||| &5' --GGCCTGCATCCCAGACTGCCA 3' Nub1 mmu-miR-370 beg:533 end:550 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& ||||| ..|||||| &5' --------CCACCGTGGCAGGC 3' Nub1 mmu-miR-382star beg:1262 end:1282 pic:3' TTTTTCACAACAGGCACTTACT 5'& |||||| ||||.||. &5' -----GTGTTGGGAGTGAGTGG 3' Nub1 mmu-miR-431star beg:971 end:993 pic:3' TCTTCGGGA-CGTTCTGCTGGAC 5'& ||||||.| |||. |||| &5' -GAAGCCTTGGCAGCA-GACC-- 3' Nub1 mmu-miR-431star beg:318 end:342 pic:3' TCTTCGGGACGTTCTGCTGGAC 5'& ||||| .|||| ||| |.|||| &5' AGAAGGTCTGC-AGAGGGCCTG 3' Nub1 mmu-miR-432 beg:470 end:492 pic:3' GACGGGTGAC-TAGA--TGAGGTTCT 5'& |||.|| |||| |.|||||| &5' ----CCATTGCATCTTCATTCCAAG- 3' Nub1 mmu-miR-448 beg:426 end:440 pic:3' TACCCTGTAGGATGTATACGTT 5'& .||.| |.||||| &5' ---------TCTGC-TGTGCAA 3' Nub1 mmu-miR-449a beg:213 end:235 pic:3' TGGTCGATTGTTA--TGTGACGGT 5'& .|| .|| | ||||||| &5' ---GGCCTGCATCCCAGACTGCCA 3' Nub1 mmu-miR-449b beg:444 end:462 pic:3' CGGTCGATTGTT-GTGACGGA 5'& || || ..||||| &5' -----CTCACCCTTGCTGCC- 3' Nub1 mmu-miR-450b-3p beg:1222 end:1243 pic:3' TACGTACGTTTTAC-AAGGGTTA 5'& ||| | |. || ||||||.| &5' --GCA-GTGAGTTGCTTCCCAGT 3' Nub1 mmu-miR-450b-3p beg:935 end:956 pic:3' TACGTACGTTT-TACAAGGGTTA 5'& .||| .||||||||| &5' ----GTGCCACTGTGTTCCCAA- 3' Nub1 mmu-miR-450b-5p beg:315 end:336 pic:3' ATAAGTC-CTTGTATGACGTTTT 5'& |.| ||| .| |||||.|. &5' ----CGGAGAAGGT-CTGCAGAG 3' Nub1 mmu-miR-470 beg:144 end:170 pic:3' TGAGT-GGTCACG-GTCAGGTTCTT 5'& ||| .||| | |||||.|.||| &5' --TCAGTCAGAGGACAGTCTAGGAA 3' Nub1 mmu-miR-488 beg:72 end:84 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& ||.|||||| &5' ------------GCTTTTCAA 3' Nub1 mmu-miR-488 beg:949 end:966 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& |||||| ||.||||| &5' --CCAAGA----GCTTTTCA- 3' Nub1 mmu-miR-497 beg:386 end:406 pic:3' ATGTTTGGTGTCAC-ACGACGAC 5'& |||| || |||||||| &5' ------CCACTGTCCTGCTGCTG 3' Nub1 mmu-miR-503 beg:383 end:406 pic:3' GACGTCATGACAAGGGCGACGAT 5'& ||| |||| |||.||||||. &5' -TGCCC-ACTG-TCCTGCTGCTG 3' Nub1 mmu-miR-532-3p beg:1043 end:1055 pic:3' ACGTTCGGAACCCACACCCTCC 5'& |||||||.| &5' ------------GTGTGGGGG- 3' Nub1 mmu-miR-541 beg:869 end:895 pic:3' TCACACTGGTTGTAGTCTTA-GGGAA 5'& .|||||.|||. |||| ||.| &5' GGTGTGGCCAGG--CAGATAGCCTT- 3' Nub1 mmu-miR-546 beg:413 end:427 pic:3' CTGAGGCACGGTGGTA 5'& |||| |||||| &5' --CTCCC--CCACCA- 3' Nub1 mmu-miR-654-3p beg:1047 end:1069 pic:3' TTCCACTACCAG--TCGTCTGTAT 5'& ||| || .||||||||| &5' ---GTGGGGGATAGGGCAGACATA 3' Nub1 mmu-miR-666-3p beg:1309 end:1329 pic:3' TCGTCCGCTAGTGCGACGTCGG 5'& .||.| .| ||||||| &5' ---GGGTGCA-GCTCTGCAGC- 3' Nub1 mmu-miR-669g beg:1083 end:1103 pic:3' TAGTACAGTTGTGTA---TGTTACGT 5'& ..| || ||||||. &5' --------GGCTCAGAAGACAATGT- 3' Nub1 mmu-miR-669g beg:240 end:260 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& ||. | ||| ||.||.| &5' -----GTTTTC-CATTCAGTGTA 3' Nub1 mmu-miR-670 beg:245 end:267 pic:3' AAGTGGTGTATGTGA----GTCCCTA 5'& |||. || | |||||| &5' ----CCATT--CAGTGTAACAGGGA- 3' Nub1 mmu-miR-671-5p beg:86 end:108 pic:3' GAGGTCGGGGAGGTC---CCGAAGGA 5'& . |||.| |||||||| &5' ------TTTCTCTAAGTAGGCTTCCT 3' Nub1 mmu-miR-672 beg:655 end:679 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& |||.||| |||. ||.||.| &5' TCATACAAAGTGAA--AATCTTA 3' Nub1 mmu-miR-672 beg:510 end:532 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& ||. |||| ..|||.|||| &5' --ACGGACAGGCTGCCAGCCTC- 3' Nub1 mmu-miR-673-3p beg:301 end:322 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& ||| .| .||.|||||| &5' ---GCAGGGTAGGTAGTCCCGGA 3' Nub1 mmu-miR-677 beg:738 end:754 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& .|||||| .||||| &5' --GGAAGCT------TACTGA- 3' Nub1 mmu-miR-683 beg:966 end:990 pic:3' CTCCTGTGTCGAA--------TGTCGTCC 5'& ||||| .|||||| &5' -------CAGCTGAAGCCTTGGCAGCAG- 3' Nub1 mmu-miR-684 beg:1370 end:1382 pic:3' AACTGAACTTCCCTTTTGA 5'& | .|||||||. &5' -------GCGGGGAAAAT- 3' Nub1 mmu-miR-686 beg:249 end:271 pic:3' AGAAGTGGCAGA--CCCTTCGTTA 5'& |||| .|| ||||||||. &5' --TTCAGTGTAACAGGGAAGCAG- 3' Nub1 mmu-miR-696 beg:1288 end:1305 pic:3' GGGTGTCGTTCGTGTGCG 5'& |||||||| |||||. &5' CCCACAGC-AGCACG--- 3' Nub1 mmu-miR-705 beg:520 end:541 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& ||| .||.| ||||||||| &5' -GCCAGCCTC-CCTCCCACC 3' Nub1 mmu-miR-705 beg:273 end:295 pic:3' ACGGGT-GGGGTGGAGGGTGG 5'& |||| ||||||| |||||| &5' --CCCACCCCCACCCCCCACC 3' Nub1 mmu-miR-711 beg:790 end:808 pic:3' GAATGTAGAGAGGGGCCCAGGG 5'& |||||||.|||| | &5' -------CTCTCCCTGGGTTTC 3' Nub1 mmu-miR-741 beg:438 end:451 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& || ||||||| &5' -------------GCTTCTCTCA 3' Nub1 mmu-miR-742 beg:227 end:249 pic:3' AAATGGGTCGTACCACCGAAAG 5'& |.|| || |||.|||| &5' --TGCCACTC-TGTTGGTTTTC 3' Nub1 mmu-miR-743b-5p beg:983 end:1003 pic:3' ACTACCTGTGGTCAGACTTGT 5'& | | |||| |||.||| &5' ----GCAGACCAAGCTGGACA 3' Nub1 mmu-miR-744 beg:1305 end:1327 pic:3' ACGACAATCGGGATCGGGGCGT 5'& |||| .|. | |||.|.||| &5' -GCTGG-GGTGC-AGCTCTGCA 3' Nub1 mmu-miR-744 beg:448 end:467 pic:3' ACGACAATCGGGAT---CGGGGCGT 5'& |||| ||||.||| &5' ---------CCCTTGCTGCCCTGCA 3' Nub1 mmu-miR-744 beg:180 end:205 pic:3' ACGACAATCGGGAT----CGGGGCGT 5'& || ||||.||. ||||||. &5' -GCC--TAGCTCTGCTGTGCCCCGT- 3' Nub1 mmu-miR-744star beg:978 end:990 pic:3' TCCAACTCCAATCACCGTTGTC 5'& |||||.||| &5' -------------TGGCAGCAG 3' Nub1 mmu-miR-758 beg:810 end:826 pic:3' ATCACCTGGTCCAGTGTTT 5'& || |||||||.| &5' ------ACTGGGTCACAGA 3' Nub1 mmu-miR-761 beg:1139 end:1160 pic:3' ACACAGTCAAAGTGGGACGACG 5'& || .| | ||.|||||. &5' --TGCTGGCC-C-CCTTGCTGT 3' Nub1 mmu-miR-761 beg:178 end:198 pic:3' ACACAGTCAAAGTGGGACGACG 5'& ||| .|.||||||. &5' -----CAGCCTAGCTCTGCTGT 3' Nub1 mmu-miR-761 beg:222 end:243 pic:3' ACACAGTCAAA--GTGGGACGACG 5'& ||| |||.|||.|| &5' -----CAGACTGCCACTCTGTTG- 3' Nub1 mmu-miR-762 beg:511 end:532 pic:3' CGAGACAGGGCCGG-GGTCGGGG 5'& | | |||. ||||||.| &5' -----GGACAGGCTGCCAGCCTC 3' Nub1 mmu-miR-764-5p beg:1239 end:1258 pic:3' TCCTCCTGTACACTCGTGG 5'& || ||||||||||.. &5' ---AGTTCATGTGAGCATT 3' Nub1 mmu-miR-767 beg:914 end:931 pic:3' ACGAGTCTGTTGGTACCACGT 5'& || ||||. .|||||. &5' -GC-CAGAT----GTGGTGT- 3' Nub1 mmu-miR-874 beg:1049 end:1064 pic:3' AGCCAGGGAGCCCGGTCCCGTC 5'& ||| .||||||| &5' ----------GGGATAGGGCAG 3' Nub1 mmu-miR-877 beg:192 end:214 pic:3' GGGACGCGG--TA-GAGGAGATG 5'& |||.||| .| |||||||| &5' --CTGTGCCCCGTCCTCCTCTA- 3' Nub1 mmu-miR-878-5p beg:799 end:820 pic:3' ACAGAACTGTAGG---TTGATCTAT 5'& |. ||| ||||.|.| &5' ------GGTTTCCTATAACTGGGT- 3' Nub1 mmu-miR-879 beg:967 end:982 pic:3' CCGAATCTCGATATTCGGAGA 5'& ||||. ||||||. &5' -------AGCTG-AAGCCTT- 3' Nub1 mmu-miR-881 beg:1209 end:1230 pic:3' AGATAAGTCTTTTCTGTGTCAA 5'& |.| .| |||.|||| &5' --TGTCTGGTCT-GACGCAGT- 3' Nub1 mmu-miR-883a-5p beg:349 end:368 pic:3' CATTGACGATGAAG-AGAGTCGT 5'& |||. || ||||||| &5' ----CTGTCG--TCTTCTCAGC- 3' Nub1 mmu-miR-92astar beg:268 end:288 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& ..| || ||| ||||||| &5' --GGTCCC-CCAC-CCCCACC- 3' Nub1 mmu-miR-92astar beg:406 end:426 pic:3' CATTACGGT-GGTTAGGGGTGGA 5'& |||| || ||||||| &5' ----TGCCCTCCTC-CCCCACC- 3' Nub1 mmu-miR-93 beg:372 end:388 pic:3' GATGGACGTGCTTGTCGTGAAAC 5'& ||||. |||||||| &5' ---CCTGT-------GCACTTTG 3' Nub1 mmu-miR-690 beg:879 end:895 pic:3' AAACCAACACTCGG--ATCGGAAA 5'& .|| ||||||| &5' ----------GGCAGATAGCCTT- 3' Nub1 mmu-miR-1894-3p beg:546 end:565 pic:3' GAGGGAAGTGGGAGAGGGAACG 5'& | ..| ||||||| &5' ----CGGTGCAGA-TCCCTTG- 3' Nub1 mmu-miR-455 beg:1096 end:1111 pic:3' CACATATACGGGCACCTGACG 5'& |||. |||||||| &5' ------ATGT--GTGGACTG- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nub1 RAID00036418 mmu-miR-539-5p miRNA MIMAT0003169 Nub1 mRNA 53312 Prediction 0.2202 Nub1 RAID00055673 mmu-miR-3085-3p miRNA MIMAT0014879 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00140379 mmu-miR-361-5p miRNA MIMAT0000704 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00206825 mmu-miR-761 miRNA MIMAT0003893 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00215852 mmu-miR-128-3p miRNA MIMAT0000140 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00272787 mmu-miR-106a-5p miRNA MIMAT0000385 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00507055 mmu-miR-7222-5p miRNA MIMAT0028412 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00583354 mmu-miR-181a-5p miRNA MIMAT0000210 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00649775 mmu-miR-200a-3p miRNA MIMAT0000519 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00708732 mmu-miR-130b-3p miRNA MIMAT0000387 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00748301 mmu-miR-181c-5p miRNA MIMAT0000674 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00760093 mmu-miR-141-3p miRNA MIMAT0000153 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00809849 mmu-miR-214-3p miRNA MIMAT0000661 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00873571 mmu-miR-17-5p miRNA MIMAT0000649 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID00892842 mmu-miR-384-3p miRNA MIMAT0001076 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID01375281 mmu-miR-106b-5p miRNA MIMAT0000386 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID01664455 mmu-miR-7229-3p miRNA MIMAT0028427 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID01821677 mmu-miR-1190 miRNA MIMAT0005847 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID01857459 mmu-miR-26a-5p miRNA MIMAT0000533 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID01897376 mmu-miR-6996-5p miRNA MIMAT0027894 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID02193464 mmu-miR-7670-3p miRNA MIMAT0029847 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID02235936 mmu-miR-18a-3p miRNA MIMAT0004626 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID02313344 mmu-miR-346-5p miRNA MIMAT0000597 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID02482988 mmu-miR-181d-5p miRNA MIMAT0004324 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID02629380 mmu-miR-5619-3p miRNA MIMAT0022366 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID02800993 mmu-miR-211-5p miRNA MIMAT0000668 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID02806873 mmu-miR-20b-5p miRNA MIMAT0003187 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID02854735 mmu-miR-497b miRNA MIMAT0031404 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID02893441 mmu-miR-7069-3p miRNA MIMAT0028045 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID02971121 mmu-miR-26b-5p miRNA MIMAT0000534 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03070964 mmu-miR-93-5p miRNA MIMAT0000540 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03308917 mmu-miR-542-3p miRNA MIMAT0003172 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03365001 mmu-miR-136-5p miRNA MIMAT0000148 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03581345 mmu-miR-92a-2-5p miRNA MIMAT0004635 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03688463 mmu-miR-3470a miRNA MIMAT0015640 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03690195 mmu-miR-181b-5p miRNA MIMAT0000673 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03703538 mmu-miR-140-3p miRNA MIMAT0000152 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03725290 mmu-miR-20a-5p miRNA MIMAT0000529 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03787144 mmu-miR-383-3p miRNA MIMAT0017082 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03797152 mmu-miR-216a-5p miRNA MIMAT0000662 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03925311 mmu-miR-204-5p miRNA MIMAT0000237 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03949759 mmu-miR-203-3p miRNA MIMAT0000236 Nub1 mRNA 53312 Prediction 0.1828 Nub1 RAID03949910 mmu-miR-140-5p miRNA MIMAT0000151 Nub1 mRNA 53312 Prediction 0.1828