DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004542 mmu-miR-191* 64295 Tmub1 cccuugcuuuagguuCACGUCg |||||| uguuuucuggaauuuGUGCAGa 2 8 413 434 [mm9:5:23951306-23951327:-] 0.5852 120 6 -14.64 -0.1170 MIMAT0004572 mmu-miR-290-3p 64295 Tmub1 cccgaauuuuGAUCCG--CCGUGAAa ||:| : ||||||| gugggcucuuCUGGAUCAGGCACUUg 2 15 234 259 [mm9:5:23951481-23951506:-] 0.6450 141 7 -22.86 -0.1624 MIMAT0000370 mmu-miR-292-3p 64295 Tmub1 ugugaguuuuGGACC--G-CCGUGAAa :|||| | ||||||| agugggcucuUCUGGAUCAGGCACUUg 2 15 233 259 [mm9:5:23951481-23951507:-] 0.6450 144 7 -23.43 -0.1609 MIMAT0004616 mmu-miR-30c-1* 64295 Tmub1 ccUCAUUUGUUGGGAGA-GGGUc || :|:| :|: ||| |||| aaAGGGAGCUGCUGUCUGCCCAg 2 21 60 82 [mm9:5:23951658-23951680:-] 0.6301 124 0 -21.02 -0.1048 MIMAT0005438 mmu-miR-30c-2* 64295 Tmub1 ucUCAUUUGUCGGAAGA-GGGUc || :|:| ||: ||| |||| aaAGGGAGCUGCUGUCUGCCCAg 2 21 60 82 [mm9:5:23951658-23951680:-] 0.6301 128 0 -21.74 -0.1038 MIMAT0004617 mmu-miR-148a* 64295 Tmub1 ucaGCCUCACAGAGUCU-UGAAa | ||| ||| ||| |||| ugaCAGAGGAUCU-AGAUACUUc 2 20 311 332 [mm9:5:23951408-23951429:-] 0.5819 121 0 -10.99 -0.8879 MIMAT0000556 mmu-miR-324-3p 64295 Tmub1 ucGUCGUGGACC--CCGUCACc |||| |:| | ||||||| cuCAGC-CUUCGCUGGCAGUGg 2 19 217 237 [mm9:5:23951503-23951523:-] 0.6376 151 7 -24.60 -0.1311 MIMAT0000556 mmu-miR-324-3p 64295 Tmub1 ucGU-CGUGGACCCCGUCACc || | :|:| ||||||| ucCACGGGCUUUUGGCAGUGu 2 19 5 25 [mm9:5:23951715-23951735:-] 0.5907 149 7 -19.87 -0.4041 MIMAT0004649 mmu-miR-339-3p 64295 Tmub1 gccgagACAG-CGGCUCC-GCGAGu |||: || |||| ||||| uucgggUGUUAGCGGAGGCCGCUCc 2 18 148 172 [mm9:5:23951568-23951592:-] 0.6015 128 0 -27.85 -0.2038 MIMAT0004653 mmu-miR-342-5p 64295 Tmub1 gaguuagugucUAUCGUGGGGa | :||||||| ccuuggccgccAGGGCACCCCa 2 12 269 290 [mm9:5:23951450-23951471:-] 0.6450 143 7 -21.69 -0.2116 MIMAT0003409 mmu-miR-467a 64295 Tmub1 gcGUAUAUGUACGUCCGUGAAu | | |: || ||||||||| cuCUUCUGGAU-CAGGCACUUg 2 21 239 259 [mm9:5:23951481-23951501:-] 0.6450 158 7 -17.54 -0.1593 MIMAT0004789 mmu-miR-450a-3p 64295 Tmub1 uacuuACGUUUCGU-AGGGGUUa || | || ||||||| cccucUGGACCUCAUUCCCCAAg 2 18 33 55 [mm9:5:23951685-23951707:-] 0.6104 144 7 -12.54 -0.1256 MIMAT0003733 mmu-miR-665 64295 Tmub1 uccCUGGAGUCG---GAGGACCa | :|| :|| ||||||| auaGCUCUAGGCCAUCUCCUGGg 2 18 184 206 [mm9:5:23951534-23951556:-] 0.6303 144 7 -19.83 -0.1654 MIMAT0003891 mmu-miR-770-3p 64295 Tmub1 ggucgAGGUGCAGUCCGGGUGc ||::| ||||||||| ugcugUCUGC-CCAGGCCCACu 2 18 69 89 [mm9:5:23951651-23951671:-] 0.6301 155 7 -23.26 -0.5181 MIMAT0003892 mmu-miR-762 64295 Tmub1 cgAGACAG-GGCCGGGGUCGGGg |:|| | :| ||||||| cuUUUGGCAGUGUAGCCAGCCCc 2 21 13 35 [mm9:5:23951705-23951727:-] 0.5907 143 7 -24.64 -0.3738 MIMAT0003737 mmu-miR-666-5p 64295 Tmub1 ccgagaGUGUCGACACG-GGCGa | ||||| ||| |||| cuggagCCCAGCUUUGCGCCGCa 2 17 119 141 [mm9:5:23951599-23951621:-] 0.6158 128 0 -22.94 -0.5210 MIMAT0004825 mmu-miR-423-5p 64295 Tmub1 uuUCAGAGCGAGAGACGGGGAGu ||| | || | ||||||| gcAGUGUAGC---CAGCCCCUCu 2 22 19 38 [mm9:5:23951702-23951721:-] 0.6104 149 7 -17.79 -0.1959 MIMAT0003469 mmu-miR-690 64295 Tmub1 aaaCCAAC-ACUCGGA-UCGGAAa || || ||: ||| |||||| uggGGCUGCUGGACCUCAGCCUUc 2 20 203 226 [mm9:5:23951514-23951537:-] 0.6376 130 6 -19.69 -0.1931 MIMAT0003498 mmu-miR-708* 64295 Tmub1 gaUCUUCGA-GUGU-CAGAUCAAc ||:| || |:| ||||||| agAGGAUCUAGAUACUUCUAGUUu 2 21 315 338 [mm9:5:23951402-23951425:-] 0.5819 150 7 -13.31 -0.6829 MIMAT0004238 mmu-miR-743a 64295 Tmub1 agaUGAGUCGAACCACAGAAAg || | ||| ||||||| uucAC-CCGCUGCCUGUCUUUu 2 20 89 109 [mm9:5:23951631-23951651:-] 0.6301 149 7 -12.72 -0.1227 MIMAT0004840 mmu-miR-743b-3p 64295 Tmub1 agauAAGUCG--UAC-UACAGAAAg |||| | || ||||||| ccacUUCACCCGCUGCCUGUCUUUu 2 19 85 109 [mm9:5:23951631-23951655:-] 0.6301 144 7 -10.18 -0.1239 MIMAT0004856 mmu-miR-105 64295 Tmub1 ugguguuCGUAGACUCGUGAACc | ||| | ||||||| cucuucuGGAUCAG-GCACUUGc 2 17 239 260 [mm9:5:23951480-23951501:-] 0.6450 150 7 -13.80 -0.1173 MIMAT0004868 mmu-miR-343 64295 Tmub1 agacCCGUGUACUUCCCUCu |||:|| ||||||| ccaaGGCGCA--AAGGGAGc 2 17 51 68 [mm9:5:23951672-23951689:-] 0.6301 153 7 -21.30 -0.1113 MIMAT0004932 mmu-miR-878-5p 64295 Tmub1 acagaACUGUAGGUU-GAUCUAu ||||| :| |||||| ugugcUGACAGAGGAUCUAGAUa 2 18 306 328 [mm9:5:23951412-23951434:-] 0.5819 121 6 -17.31 -0.8388 MIMAT0007866 mmu-miR-1905 64295 Tmub1 gaUGGCGCACC--ACC--CUGACCAc ||:| |||| ||| ||||||| aaACUG-GUGGACUGGGAGACUGGUg 2 21 364 388 [mm9:5:23951352-23951376:-] 0.5852 156 7 -30.74 -0.3628 MIMAT0009403 mmu-miR-1939 64295 Tmub1 cacguaACCGUCCCUUAGCu || :|||||||| gacuggUGAAGGGGAAUCGa 2 15 381 400 [mm9:5:23951340-23951359:-] 0.5852 150 7 -20.09 -0.3572 MIMAT0009412 mmu-miR-1946a 64295 Tmub1 uuUUCACAC-ACGGUGGUGACGGG-CCGa ||| | | |||::: |||||| ||| caAAGGGAGCUGCUGU--CUGCCCAGGCc 2 26 59 85 [mm9:5:23951655-23951681:-] 0.6301 129 0 -24.91 -0.2439 MIMAT0011208 mmu-miR-2132 64295 Tmub1 guagcgcaguuGUGGGCGg ||||||| caggcccacuuCACCCGCu 2 9 80 98 [mm9:5:23951642-23951660:-] 0.6301 140 7 -16.48 -0.4757 MIMAT0013803 mmu-miR-2861 64295 Tmub1 ggCGGGCGGCGGUCCGGGg |:|:|| |||||||| cuGUCUGC--CCAGGCCCa 2 18 71 87 [mm9:5:23951653-23951669:-] 0.6301 154 7 -30.33 -0.3066 MIMAT0000126 mmu-miR-27b 64295 Tmub1 cgUCUUGAAUCGGUGACACUu ||| : || ||||||| gcAGAUUAAAGAAACUGUGAc 2 20 430 450 [mm9:5:23951290-23951310:-] 0.5852 151 7 -18.38 -0.9323 MIMAT0000126 mmu-miR-27b 64295 Tmub1 cguCUUGAAUCGGUGA-CACUu |:||| :| ||| |||| gguGGACUGGGAGACUGGUGAa 2 19 369 390 [mm9:5:23951350-23951371:-] 0.5852 122 0 -16.94 -0.1319 MIMAT0000537 mmu-miR-27a 64295 Tmub1 cgcCUUGAAUCGGUGACACUu || : || ||||||| gcaGAUUAAAGAAACUGUGAc 2 19 430 450 [mm9:5:23951290-23951310:-] 0.5852 146 7 -12.97 -0.9323 MIMAT0000748 mmu-miR-383 64295 Tmub1 ucggUGUCAGU--GGAAGA-CUAGa :|||| : :||||| |||| gcugGCAGUGGGCUCUUCUGGAUCa 2 19 227 251 [mm9:5:23951489-23951513:-] 0.6450 121 0 -16.54 -0.3275

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G066426 Tmub1 Mus musculus 64295

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Tmub1 mmu-miR-204 beg:51 end:68 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& |||| .||||||||. &5' AGGC--------GCAAAGGGAG 3' Tmub1 mmu-miR-211 beg:51 end:68 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& |||| .||||||||. &5' AGGC--------GCAAAGGGAG 3' Tmub1 mmu-miR-343 beg:52 end:68 pic:3' AGACCCGTGTACTTCCCTCT 5'& |||.|| ||||||| &5' ----GGCGCA--AAGGGAG- 3' Tmub1 mmu-miR-27a beg:436 end:450 pic:3' CGCCTTGAATCGGTGACACTT 5'& || ||||||| &5' ---------AGAAACTGTGA- 3' Tmub1 mmu-miR-2132 beg:80 end:99 pic:3' GTAGCGCAGTT-GTGGGCGG 5'& || |||||||. &5' ----GCCCACTTCACCCGCT 3' Tmub1 mmu-miR-2861 beg:68 end:87 pic:3' GGCGGGCGGCGGTCCGGGG 5'& |.|.|.|| |||||||| &5' CTGTCTGC--CCAGGCCC- 3' Tmub1 mcmv-miR-m01-3 beg:76 end:95 pic:3' AGCTCCGTTGTCA--GCGAAGTGGC 5'& || ||| | ||||||| &5' -----GCC-CAGGCCCACTTCACC- 3' Tmub1 mmu-miR-342-5p beg:273 end:290 pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& |.| .||||||| &5' ------CGCCAG-GGCACCCC- 3' Tmub1 mmu-miR-105 beg:243 end:260 pic:3' TGGTGTTCGTAGACTCGTGAACC 5'& | ||| .||||||| &5' -------GGATCA-GGCACTTG- 3' Tmub1 mmu-miR-1939 beg:381 end:401 pic:3' CACGTAACCG---TCCCTTAGCT 5'& |||. .||||||||| &5' ------TGGTGAAGGGGAATCGA 3' Tmub1 mmu-miR-292-3p beg:240 end:259 pic:3' TGTGAGTTTTGGACCG---CCGTGAAA 5'& .|||| ||||||| &5' ----------TCTGGATCAGGCACTT- 3' Tmub1 mmu-miR-290-3p beg:241 end:259 pic:3' CCCGAATTTTGATCCG--CCGTGAAA 5'& ||.| ||||||| &5' ----------CTGGATCAGGCACTT- 3' Tmub1 mmu-miR-467a beg:242 end:260 pic:3' GCGTATATGTACGTCCGTGAAT 5'& |. || |||||||||. &5' ------TGGAT-CAGGCACTTG 3' Tmub1 mmu-miR-324-3p beg:7 end:25 pic:3' TCGTCGTGGACCCCGTCACC 5'& | .|.| ||||||| &5' ----GGGCTTTTGGCAGTG- 3' Tmub1 mcmv-miR-M87-1 beg:64 end:87 pic:3' CGACGGC-GACGGCTGCCGACGGA 5'& |||||.| ||||| ||| || &5' GCTGCTGTCTGCCCA-GGC--CC- 3' Tmub1 mcmv-miR-M87-1 beg:256 end:280 pic:3' CGACGGCGACGGCTGCCGACGGA 5'& ||||.||||||| .||| ||| &5' GCTGTCGCTGCCT-TGGCCGCC- 3' Tmub1 mcmv-miR-M87-1 beg:191 end:213 pic:3' CGACGGC-GACGGCTGCCGACGGA 5'& ||| || |.|. ||||||. &5' ---GCCATCTCCTGG-GGCTGCT- 3' Tmub1 mmu-let-7c-1star beg:416 end:434 pic:3' CCTTTCGATCTTCCAACATGTC 5'& ||.||| ||||.||| &5' ------CTGGAAT-TTGTGCAG 3' Tmub1 mmu-miR-1188 beg:208 end:230 pic:3' AGGACC-GG-GTTGGAGTGTGGT 5'& |||| || ||.|||. |.|. &5' --CTGGACCTCAGCCTT-CGCT- 3' Tmub1 mmu-miR-1188 beg:115 end:139 pic:3' AGGAC--CGGGTTGGAGTGTGGT 5'& |||| |||||.|.| |.|| &5' -CCTGGAGCCCAGCTTTGCGCC- 3' Tmub1 mmu-miR-1198 beg:266 end:287 pic:3' GGT-TCGGTCGGTCCTTGTGTAT 5'& || .||| |||||| .||| &5' CCTTGGCC-GCCAGG-GCAC--- 3' Tmub1 mmu-miR-128 beg:429 end:450 pic:3' TTTCTCTGGCCAAG-TGACACT 5'& |||.. ||||||| &5' ----AGATTAAAGAAACTGTGA 3' Tmub1 mmu-miR-135a beg:180 end:199 pic:3' AGTGTATCCTTATTTTTCGGTAT 5'& ||||| |.||||| &5' ---CATAGCTCT---AGGCCAT- 3' Tmub1 mmu-miR-135b beg:180 end:199 pic:3' AGTGTATCCTTACTTTTCGGTAT 5'& ||||| |.||||| &5' ---CATAGCTCT---AGGCCAT- 3' Tmub1 mmu-miR-146bstar beg:187 end:209 pic:3' TGGTCTTGACTCAG-GGATCCCG 5'& |.|| | || |||.|||| &5' -CTAGGCCA---TCTCCTGGGGC 3' Tmub1 mmu-miR-18astar beg:391 end:410 pic:3' GTCTTC-CTCGTGAATCCCGTCA 5'& .||| ||| .|||||| &5' -GGAATCGAGA----GGGGCAG- 3' Tmub1 mmu-miR-1904 beg:394 end:412 pic:3' GGAGGGAGGTCTCCTCGTCTTG 5'& || |||||.|||||. &5' ------TCGAGAGGGGCAGAG- 3' Tmub1 mmu-miR-1905 beg:363 end:389 pic:3' GATGGCGCACCA---CC-CTGACCAC 5'& ||.| |||| || |||||||| &5' --ACTG-GTGGACTGGGAGACTGGTG 3' Tmub1 mmu-miR-1928 beg:13 end:29 pic:3' CTCGACCGTTACATCGA 5'& .|||||.|||||| &5' ---TTGGCAGTGTAGC- 3' Tmub1 mmu-miR-1929 beg:186 end:206 pic:3' GAGACGAGATATTTC--AGGATCTT 5'& |||||| ||||.|. &5' ----GCTCTAGGCCATCTCCTGGG- 3' Tmub1 mmu-miR-1934 beg:234 end:252 pic:3' TCTCCTGCTTCGTCCCCTGGTCT 5'& ||.| |||.||| &5' ---GGGCTCTTCT--GGATCAG- 3' Tmub1 mmu-miR-1948 beg:340 end:354 pic:3' GACATGCTCACGAGACGGATTT 5'& | |||||||. &5' ----------GAGCTGCCTAG- 3' Tmub1 mmu-miR-1953 beg:96 end:114 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& ||||| .||||||| &5' -----GCCTGTC--TTTTCCCA 3' Tmub1 mmu-miR-1962 beg:115 end:134 pic:3' TACACAGGGTCAC-GGTCGGAGA 5'& || | | |||||.|. &5' ------CCTGGAGCCCAGCTTT- 3' Tmub1 mmu-miR-1967 beg:166 end:185 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& |||| .. ||||.||| &5' -------CTCCGTGTGATCTTCA 3' Tmub1 mmu-miR-1971 beg:214 end:233 pic:3' AGAGTCGGGT-CGGAAATG 5'& |||||||. ||. .| &5' -CTCAGCCTTCGCTG--GC 3' Tmub1 mmu-miR-199a-5p beg:362 end:387 pic:3' CTTGTCCATCAGACTTG-TGACCC 5'& ||| |||.| |||.. ||||| &5' -AACTGGTGGACTGGGAGACTGG- 3' Tmub1 mmu-miR-2134 beg:36 end:58 pic:3' CGTGGGGCAAAGGGTTCTG 5'& | |||.| || ||||||.| &5' GGACCTCATTCCCCAAGGC 3' Tmub1 mmu-miR-2135 beg:128 end:151 pic:3' CAAAGC-CGGGGT--TCTGGAGA 5'& ||.| ||| || .|||.|| &5' --TTTGCGCCGCAGAGGACTTC- 3' Tmub1 mmu-miR-2135 beg:203 end:220 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& |||. | .|||||| &5' -----GGCTGCTGGACCTC- 3' Tmub1 mmu-miR-2135 beg:28 end:46 pic:3' CAAAGCCGGGGT--TCTGGAGA 5'& ||||| .|||||| &5' ------GCCCCTCTGGACCTC- 3' Tmub1 mmu-miR-2137 beg:195 end:215 pic:3' GAG-GGACCCCGAGGGCGGCCG 5'& || ||||||||| ||.|| &5' -TCTCCTGGGGCT---GCTGG- 3' Tmub1 mmu-miR-221 beg:15 end:29 pic:3' CTTTGGGTCGTCTGTTACATCGA 5'& |.||.|||||| &5' -----------GGCAGTGTAGC- 3' Tmub1 mmu-miR-27b beg:428 end:450 pic:3' CGTCTTGAATCGGTGACACTT 5'& ||||| || ||||||| &5' GCAGATTAAAGAAACTGTGA- 3' Tmub1 mmu-miR-27bstar beg:224 end:243 pic:3' CAAGTGGTTAGTCGATTCGAGA 5'& ||.| . ||| |..||||| &5' --TCGCTGG-CAG-TGGGCTCT 3' Tmub1 mmu-miR-291a-3p beg:242 end:259 pic:3' CGTGTGTTTCACCT---TCGTGAAA 5'& |||| .|||||| &5' ----------TGGATCAGGCACTT- 3' Tmub1 mmu-miR-294 beg:243 end:259 pic:3' TGTGTGTTTTCCCT---TCGTGAAA 5'& ||| .|||||| &5' -----------GGATCAGGCACTT- 3' Tmub1 mmu-miR-296-3p beg:203 end:227 pic:3' CCTCT-CGGAGGTGG-GTTGGGAG 5'& ||.| ||. ||| ||.||.|| &5' GGGGCTGCTGG-ACCTCAGCCTTC 3' Tmub1 mmu-miR-302a beg:242 end:260 pic:3' AGTGGTTTTGTACCT---TCGTGAAT 5'& |||| .||||||. &5' -----------TGGATCAGGCACTTG 3' Tmub1 mmu-miR-302b beg:242 end:260 pic:3' GATGATTTTGTACCT---TCGTGAAT 5'& |||| .||||||. &5' -----------TGGATCAGGCACTTG 3' Tmub1 mmu-miR-302d beg:242 end:260 pic:3' TGTGAGTTTGTACCT---TCGTGAAT 5'& |||| .||||||. &5' -----------TGGATCAGGCACTTG 3' Tmub1 mmu-miR-3099star beg:49 end:71 pic:3' GTTCC-CGACCTTCCTTCGACC 5'& ||||| || ||||.||||| &5' CAAGGCGCA--AAGGGAGCTG- 3' Tmub1 mmu-miR-30c-2star beg:100 end:114 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& |.|||.||||| &5' ----------GTCTTTTCCCA- 3' Tmub1 mmu-miR-320 beg:114 end:134 pic:3' AGCGGGAGAGTTGGGTCGAAAA 5'& |||| |.||||||||| &5' ---CCCTGG-AGCCCAGCTTT- 3' Tmub1 mmu-miR-324-3p beg:216 end:238 pic:3' TCGTCGTGGACC--CCGTCACC 5'& |||| |.| |||||||| &5' --CAGC-CTTCGCTGGCAGTGG 3' Tmub1 mmu-miR-338-3p beg:197 end:216 pic:3' GTTGTTTTAGTGACT---ACGACCT 5'& || |||. ||||||| &5' --------TC-CTGGGGCTGCTGGA 3' Tmub1 mmu-miR-3473 beg:184 end:202 pic:3' CCGAC--TCGGTAGAGAGGT 5'& ||| .|||||||| |. &5' -GCTCTAGGCCATCTC-CT- 3' Tmub1 mmu-miR-34a beg:250 end:271 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& .| ||. |||. |.||||| &5' GC-ACTTGCTGT--CGCTGCC- 3' Tmub1 mmu-miR-34a beg:82 end:102 pic:3' TGTTGGTCGATTCT-GTGACGGT 5'& ||| || |.||||| &5' ----CCA-CTTCACCCGCTGCC- 3' Tmub1 mmu-miR-34b-5p beg:83 end:103 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& || || |.|||||| &5' -----CA-CTTCACCCGCTGCCT 3' Tmub1 mmu-miR-34b-5p beg:250 end:272 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& .|| |||. |.|||||| &5' GCACTT-GCTGT---CGCTGCCT 3' Tmub1 mmu-miR-34c beg:253 end:271 pic:3' CGTTAGTCGATTGAT-GTGACGGA 5'& || || .||. |.|||||| &5' -----CA-CTTGCTGTCGCTGCCT 3' Tmub1 mmu-miR-384-5p beg:408 end:433 pic:3' TGTAACGGAT--CCTTAACAAATGT 5'& .|||..| |||||| |.|| &5' --GTTGTTTTCTGGAATTTG-TGCA 3' Tmub1 mmu-miR-449a beg:252 end:271 pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||. |||. |.||||| &5' ACTTGCTGT-----CGCTGCC- 3' Tmub1 mmu-miR-449a beg:82 end:102 pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||| || || |.||||| &5' -CCA-CTT-CACC-CGCTGCC- 3' Tmub1 mmu-miR-449b beg:250 end:272 pic:3' CGGT--CGATTGTTGTGACGGA 5'& || |||. |.|||||| &5' GCACTTGCTGT---CGCTGCCT 3' Tmub1 mmu-miR-449b beg:82 end:103 pic:3' CGGTCGATTGTTGTGACGGA 5'& ||| || |.|||||| &5' GCCCACTTCACCCGCTGCCT 3' Tmub1 mmu-miR-449c beg:253 end:271 pic:3' GGTCGATCGTTACGTGACGGA 5'& || || || .| |.|||||| &5' -CA-CTTGCTGT-CGCTGCCT 3' Tmub1 mmu-miR-449c beg:83 end:103 pic:3' GGTCGATCGTTACGTGACGGA 5'& ||| || || |.|||||| &5' CCA-CTT-CACC-CGCTGCCT 3' Tmub1 mmu-miR-450b-5p beg:414 end:435 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& ||| ||||. |. ||||.| &5' --TTCTGGAATTTG-TGCAGA- 3' Tmub1 mmu-miR-455 beg:364 end:378 pic:3' CACATATACGGGCACCTGACG 5'& |. |||||||| &5' ---------CTGGTGGACTG- 3' Tmub1 mmu-miR-467b beg:242 end:261 pic:3' GTATATGTACGTCCGTGAATG 5'& |. || |||||||||.| &5' ----TGGAT-CAGGCACTTGC 3' Tmub1 mmu-miR-485 beg:118 end:134 pic:3' CTTAAGTAGTGCC---GGTCGGAGA 5'& || |||||.|. &5' -----------GGAGCCCAGCTTT- 3' Tmub1 mmu-miR-493 beg:162 end:185 pic:3' GGACCGTGTGT--CATCCTGGAAGT 5'& ||| |.| ||. ||.||||| &5' ---GGC-CGCTCCGTGTGATCTTCA 3' Tmub1 mmu-miR-501-5p beg:306 end:322 pic:3' AAAGTGGGTCCCTGTTTCCTAA 5'& .|. ||||.||||| &5' ----GCT----GACAGAGGAT- 3' Tmub1 mmu-miR-666-5p beg:86 end:105 pic:3' CCGAGAGTGT-CGACACGGGCGA 5'& .|||| || ||||.|. &5' ----TTCACCCGC--TGCCTGT- 3' Tmub1 mmu-miR-673-3p beg:110 end:124 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& ||| |||.||| &5' ----------ACTA--CCCTGGA 3' Tmub1 mmu-miR-673-5p beg:430 end:450 pic:3' GAGGTTCCTGGTCTC---GACACTC 5'& ||..| || |||||| &5' -------GATTAAAGAAACTGTGA- 3' Tmub1 mmu-miR-681 beg:191 end:210 pic:3' TCGACGGACGGTCGCTCCGAC 5'& ||| |. .|.||||| &5' ----GCCATCTCCTGGGGCTG 3' Tmub1 mmu-miR-693-3p beg:330 end:350 pic:3' AATGTCGGTGTAGACTTTCGACG 5'& .||. || |.|||||| &5' ---TAGTTTCAA---AGAGCTGC 3' Tmub1 mmu-miR-704 beg:399 end:418 pic:3' GATCCTCGTCTCGTGTACAGA 5'& |||.||||||. |||.| &5' --AGGGGCAGAGT---TGTTT 3' Tmub1 mmu-miR-743a beg:89 end:110 pic:3' AGATGAGTCGAACCACAGAAAG 5'& || | ||| |||||||. &5' ---AC-CCGCTGCCTGTCTTTT 3' Tmub1 mmu-miR-743b-3p beg:93 end:110 pic:3' AGATAAGTCGTACTACAGAAAG 5'& || |||||||. &5' --------GCTGCCTGTCTTTT 3' Tmub1 mmu-miR-743b-5p beg:24 end:43 pic:3' ACTACCTGTGGTC----AGACTTGT 5'& .|||| ||||.|| &5' --------GCCAGCCCCTCTGGAC- 3' Tmub1 mmu-miR-760 beg:105 end:127 pic:3' AGGGGTGTCTGGG-TCTCGGC 5'& |.||||| |||| .||||| &5' TTCCCACT-ACCCTGGAGCC- 3' Tmub1 mmu-miR-761 beg:243 end:264 pic:3' ACACAGTCAAAGTGGGACGACG 5'& | |||| || |.|||||. &5' -GGATCAGG--CA-CTTGCTGT 3' Tmub1 mmu-miR-762 beg:111 end:134 pic:3' CGAGACAGGGCCG-GGGTCGGGG 5'& || ||.|| ||||||... &5' ---CTACCCTGGAGCCCAGCTTT 3' Tmub1 mmu-miR-770-3p beg:67 end:89 pic:3' GGTCG--AGGTGCAGTCCGGGTGC 5'& || || | ||||||||| &5' ---GCTGTCTGCC-CAGGCCCAC- 3' Tmub1 mmu-miR-874 beg:261 end:286 pic:3' AGCCAGGGAGCC--CGGTCCCGTC 5'& ||| | |||.|| ||||||||| &5' TCGCTGCCTTGGCCGCCAGGGCA- 3' Tmub1 mmu-miR-877 beg:185 end:204 pic:3' GGGACGCGGTAGAGGAGATG 5'& |.|| |||||||||| &5' CTCTAGGCCATCTCCT---- 3' Tmub1 mmu-miR-878-5p beg:308 end:329 pic:3' ACAGAACTGTAGGTT-GATCTAT 5'& ||||| ||||||| &5' -----TGACAGAGGATCTAGATA 3' Tmub1 mmu-miR-9 beg:423 end:442 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& | |.||| |..||||| &5' TTGTGCAG-------ATTAAAGA 3' Tmub1 mmu-miR-9 beg:325 end:345 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& |||| |||| .|||||| &5' --ATACTTCTAGTT--TCAAAGA 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Tmub1 RAID00622733 mmu-miR-6990-5p miRNA MIMAT0027882 Tmub1 mRNA 64295 Prediction 0.1828 Tmub1 RAID00724734 mmu-miR-7032-5p miRNA MIMAT0027968 Tmub1 mRNA 64295 Prediction 0.1828 Tmub1 RAID01115070 mmu-miR-324-3p miRNA MIMAT0000556 Tmub1 mRNA 64295 Prediction 0.1828 Tmub1 RAID01801680 mmu-miR-6921-5p miRNA MIMAT0027742 Tmub1 mRNA 64295 Prediction 0.2202 Tmub1 RAID02250291 mmu-miR-27a-3p miRNA MIMAT0000537 Tmub1 mRNA 64295 Prediction 0.2202 Tmub1 RAID02256528 mmu-miR-6949-3p miRNA MIMAT0027799 Tmub1 mRNA 64295 Prediction 0.1828 Tmub1 RAID02293342 mmu-miR-27b-3p miRNA MIMAT0000126 Tmub1 mRNA 64295 Prediction 0.2381 Tmub1 RAID02907403 mmu-miR-2861 miRNA MIMAT0013803 Tmub1 mRNA 64295 Prediction 0.1828 Tmub1 RAID03208847 mmu-miR-337-3p miRNA MIMAT0000578 Tmub1 mRNA 64295 Prediction 0.1828 Tmub1 RAID03522380 mmu-miR-6939-5p miRNA MIMAT0027778 Tmub1 mRNA 64295 Prediction 0.1828 Tmub1 RAID03551221 mmu-miR-423-5p miRNA MIMAT0004825 Tmub1 mRNA 64295 Prediction 0.1828 Tmub1 RAID03629400 mmu-miR-7049-3p miRNA MIMAT0028003 Tmub1 mRNA 64295 Prediction 0.1828 Tmub1 RAID03826527 mmu-miR-383-5p miRNA MIMAT0000748 Tmub1 mRNA 64295 Prediction 0.1828 Tmub1 RAID03842056 mmu-miR-7033-5p miRNA MIMAT0027970 Tmub1 mRNA 64295 Prediction 0.1828 Tmub1 RAID04046095 mmu-miR-3091-3p miRNA MIMAT0014904 Tmub1 mRNA 64295 Prediction 0.1828