DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT438688 mmu-miR-181b-5p Mus musculus Uchl1 22223 Mus musculus Luciferase reporter assay//qRT-PCR//Western blot Functional MTI 23900885

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000143 mmu-miR-9* 22223 Uchl1 ugaaAGCCAAUAGAUCGAAAUa |:|||| | ||||||| gcccUUGGUU-UGCAGCUUUAg 2 19 57 77 [mm9:5:67078224-67078244:+] 0.5353 156 7 -13.89 -0.1008 MIMAT0004533 mmu-miR-141* 22223 Uchl1 agGUUGUGACGUGACCUUCUac :|:: || | |||||| ucUAGUCCUUAAGAGGAAGAau 3 21 261 282 [mm9:5:67078428-67078449:+] 0.6728 128 0 -10.92 -0.1255 MIMAT0004547 mmu-miR-203* 22223 Uchl1 acAACUUGACAGUUCUUGGUGa || |:| |: |||||||| gcUUUAGCACUU-AGAACCACa 2 21 71 91 [mm9:5:67078238-67078258:+] 0.6080 154 7 -13.21 -1.1355 MIMAT0004629 mmu-miR-22* 22223 Uchl1 auuucgaacggugaCUUCUUGa ||||||: cuaguccuuaagagGAAGAAUa 2 9 262 283 [mm9:5:67078429-67078450:+] 0.6728 124 0 -7.79 -0.1013 MIMAT0004630 mmu-miR-26b* 22223 Uchl1 cuCGGUUCAUUACCUCUU-GUCc |:| :| :| ||||| ||| --GUCUGGGGAGAGAGAACCAGc 2 21 1 21 [mm9:5:67078168-67078188:+] 0.6140 120 0 -12.90 -0.1425 MIMAT0004635 mmu-miR-92a* 22223 Uchl1 cauUACGGUGGUUAGGGGUGGa || || :| | ||||||| cccAUCCCCUCCA-CCCCACCc 2 20 115 135 [mm9:5:67078282-67078302:+] 0.6080 153 7 -21.81 -0.2490 MIMAT0002110 mmu-miR-469 22223 Uchl1 ccuGUGGUUCUAGUUACUUUCUCCgu :::| || || | |||||| guuUGUCUAG-UCCUU--AAGAGGaa 3 24 256 278 [mm9:5:67078423-67078445:+] 0.6728 122 0 -10.56 -0.1040 MIMAT0003894 mmu-miR-764-5p 22223 Uchl1 uccuccuGUAC-ACUCGUGg || | ||||||| gccacacCAGGCUGAGCACu 2 13 160 179 [mm9:5:67078327-67078346:+] 0.5725 143 7 -12.76 -0.1779 MIMAT0004825 mmu-miR-423-5p 22223 Uchl1 uuucAGAGCGAGA-GACGGGG-AGu |: ||:||| | ||||| || cuucUUGCGUUCUACAGCCCCAUCc 2 20 97 121 [mm9:5:67078264-67078288:+] 0.6080 126 0 -21.66 -0.1791 MIMAT0003469 mmu-miR-690 22223 Uchl1 aaACCAACACU---CGGAUC-GGAAa ||| ||||: |:|||| |||| ccUGGAUGUGGUUUGUCUAGUCCUUa 2 21 246 271 [mm9:5:67078413-67078438:+] 0.6728 131 0 -21.00 -0.9327 MIMAT0003469 mmu-miR-690 22223 Uchl1 aaACCAACAC-UCG-GAUCG-GAAa ||||| || ||| :|||| ||| cuUGGUU-UGCAGCUUUAGCACUUa 2 21 60 83 [mm9:5:67078227-67078250:+] 0.5353 128 0 -17.18 -0.4958 MIMAT0005448 mmu-miR-467b 22223 Uchl1 guAUAUGU--ACGUCCGUGAAUg | |:|| | :| ||||||| ggUUUGCAGCUUUA-GCACUUAg 2 20 63 84 [mm9:5:67078230-67078251:+] 0.5353 144 7 -12.68 -0.5365 MIMAT0004848 mmu-miR-883a-5p 22223 Uchl1 caUUGAC-GAUGAA---GAGA-GUCGu |:||| || ||| :||| |||| acAGCUGUCUUCUUGCGUUCUACAGCc 2 21 89 115 [mm9:5:67078256-67078282:+] 0.6080 122 0 -15.77 -0.2747 MIMAT0004883 mmu-miR-466g 22223 Uchl1 acACACACGUACACAGACAUa | || |: | |||||||| ucUUUG-GUUUCUGUCUGUAa 2 20 218 237 [mm9:5:67078385-67078404:+] 0.6728 153 7 -11.00 -1.1367 MIMAT0004883 mmu-miR-466g 22223 Uchl1 acacacacGUACACAGA-CAUa ::||||||| ||| uucccuccUGUGUGUCUCGUAc 2 14 180 201 [mm9:5:67078347-67078368:+] 0.5725 121 0 -12.14 -0.3634 MIMAT0004862 mmu-miR-877* 22223 Uchl1 acccuccucccucUUCUCCUgu ||||||| uugucuaguccuuAAGAGGAag 3 10 258 279 [mm9:5:67078425-67078446:+] 0.6728 125 0 -9.48 -0.1091 MIMAT0007868 mmu-miR-1903 22223 Uchl1 acagAGUCCUUCUUCUUCUUcc || ||||:|||||| cuagUCCUUAAGAGGAAGAAua 3 19 262 283 [mm9:5:67078429-67078450:+] 0.6728 142 0 -16.09 -0.1003 MIMAT0007877 mmu-miR-1894-5p 22223 Uchl1 ucuccguccaccauCCCCUCUc ||||||| ----------gucuGGGGAGAg 2 9 1 12 [mm9:5:67078168-67078179:+] 0.6140 140 7 -17.15 -0.4654 MIMAT0009424 mmu-miR-1953 22223 Uchl1 gucuUCGGACUCUUGAAAGGGu || ||||| |||||||| caccAGGCUGAGCACUUUCCCu 2 19 164 185 [mm9:5:67078331-67078352:+] 0.5725 174 7 -25.06 -0.5302 MIMAT0009456 mmu-miR-1839-5p 22223 Uchl1 guucuGGACA-AGAUAG-AUGGAa ||||| | | || ||||| ucccuCCUGUGUGUCUCGUACCUu 2 18 181 204 [mm9:5:67078348-67078371:+] 0.6227 124 0 -17.76 -0.5348 MIMAT0009460 mmu-miR-1982.1 22223 Uchl1 gacacccucuuguaucCCACUCu |||||| agaauaaaacuuugcuGGUGAGa 2 8 278 300 [mm9:5:67078445-67078467:+] 0.6122 120 6 -12.47 -0.1147 MIMAT0000165 mmu-miR-155 22223 Uchl1 ugGGGAU--AGUGUU--AAUCGU-AAUu ||:|: |::||: |||||| ||| gcCCUUGGUUUGCAGCUUUAGCACUUAg 2 22 57 84 [mm9:5:67078224-67078251:+] 0.5353 123 0 -18.69 -0.5551 MIMAT0000366 mmu-miR-290-5p 22223 Uchl1 uuucacGGGGGUAUCAAAC-UCa | ||| |:||||| || gcggccCGCCCUUGGUUUGCAGc 2 17 50 72 [mm9:5:67078217-67078239:+] 0.5353 124 0 -19.18 -0.1446 MIMAT0000368 mmu-miR-291a-3p 22223 Uchl1 cguguguuucaccuUCGUGAAa ||||||| ugguuugcagcuuuAGCACUUa 2 9 62 83 [mm9:5:67078229-67078250:+] 0.5353 140 7 -11.18 -0.7163 MIMAT0000369 mmu-miR-292-5p 22223 Uchl1 guuuucuCGGGGGUCAAAC-UCa ||||:::||||| || gcggcccGCCCUUGGUUUGCAGc 2 16 50 72 [mm9:5:67078217-67078239:+] 0.5353 127 0 -20.13 -0.1446 MIMAT0000372 mmu-miR-294 22223 Uchl1 uguguguuuucccuUCGUGAAa ||||||| ugguuugcagcuuuAGCACUUa 2 9 62 83 [mm9:5:67078229-67078250:+] 0.5353 140 7 -9.56 -0.7200 MIMAT0000373 mmu-miR-295 22223 Uchl1 ucugAGUUUUCAUCAUCGUGAAa |: : || |||||||| uuggUUUGCAGCUUUAGCACUUa 2 20 61 83 [mm9:5:67078228-67078250:+] 0.5353 147 7 -11.03 -0.7163 MIMAT0000380 mmu-miR-302a 22223 Uchl1 agugguuuuguaccuUCGUGAAu ||||||| uugguuugcagcuuuAGCACUUa 2 9 61 83 [mm9:5:67078228-67078250:+] 0.5353 140 7 -12.66 -0.7126 MIMAT0000385 mmu-miR-106a 22223 Uchl1 gaUGGACGUGACAAUCGUGAAAc ||| | :||| |||||||| acACCAG-GCUG--AGCACUUUc 2 22 163 182 [mm9:5:67078330-67078349:+] 0.5725 156 7 -16.01 -0.1423 MIMAT0000386 mmu-miR-106b 22223 Uchl1 uagacGUGACAGUCGUGAAAu || | |||||||| cacacCAGGCUGAGCACUUUc 2 17 162 182 [mm9:5:67078329-67078349:+] 0.5725 148 7 -13.24 -0.1423 MIMAT0000387 mmu-miR-130b 22223 Uchl1 uacggGAAAGUAGUAA-CGUGAc :|| || | || ||||| cuuggUUUGCAGCUUUAGCACUu 2 18 60 82 [mm9:5:67078227-67078249:+] 0.5353 121 0 -8.86 -0.4411 MIMAT0000529 mmu-miR-20a 22223 Uchl1 gauggacGUGAUAUUCGUGAAAu || |:|||||||| gccacacCAGGCUGAGCACUUUc 2 17 160 182 [mm9:5:67078327-67078349:+] 0.5725 152 7 -15.10 -0.1437 MIMAT0000540 mmu-miR-93 22223 Uchl1 gauggacGUGCUUGUCGUGAAAc || | |||||||| gccacacCAGGCUGAGCACUUUc 2 17 160 182 [mm9:5:67078327-67078349:+] 0.5725 148 7 -13.82 -0.1409 MIMAT0000582 mmu-miR-338-3p 22223 Uchl1 guUGUUUUAGUGACUACGACCu | || | ||| |||||| gaAGAAUAAAACU-UUGCUGGu 2 21 276 296 [mm9:5:67078443-67078463:+] 0.6728 122 6 -15.28 -0.1879 MIMAT0000649 mmu-miR-17 22223 Uchl1 gaUGGACGUGACAUUCGUGAAAc ||| | :||| |||||||| acACCAG-GCUG--AGCACUUUc 2 22 163 182 [mm9:5:67078330-67078349:+] 0.5725 156 7 -16.01 -0.1423 MIMAT0000666 mmu-miR-320 22223 Uchl1 agCGGGAGAGUUGGGUCGAAAa |||||: : ||||||| ccGCCCUUGGUUUGCAGCUUUa 2 21 55 76 [mm9:5:67078222-67078243:+] 0.5353 152 7 -23.39 -0.4567 MIMAT0003172 mmu-miR-542-3p 22223 Uchl1 aaagucaauaguuAGACAGUGu |||||||| gccaccagggggcUCUGUCACa 2 10 138 159 [mm9:5:67078305-67078326:+] 0.5903 145 7 -17.73 -0.3452 MIMAT0003187 mmu-miR-20b 22223 Uchl1 gauggacGUGAUACUCGUGAAAc || |||||||||| gccacacCAGGCUGAGCACUUUc 2 17 160 182 [mm9:5:67078327-67078349:+] 0.5725 156 7 -17.45 -0.1437 MIMAT0003374 mmu-miR-302b 22223 Uchl1 gauGAUUUUGUACCUUCGUGAAu :|: |:| | ||||||| gguUUGCAGCUU--UAGCACUUa 2 21 63 83 [mm9:5:67078230-67078250:+] 0.5353 141 7 -12.02 -0.7126 MIMAT0003377 mmu-miR-302d 22223 Uchl1 ugugaguuuguaccuUCGUGAAu ||||||| uugguuugcagcuuuAGCACUUa 2 9 61 83 [mm9:5:67078228-67078250:+] 0.5353 140 7 -12.02 -0.7126 MIMAT0003515 mmu-miR-721 22223 Uchl1 aaGGGGGAAAAUUAACGU-GAc || || || : ||||| || gcCCGCCCUUGGUUUGCAGCUu 2 20 53 74 [mm9:5:67078220-67078241:+] 0.5353 123 0 -16.63 -0.3590

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G038243 Uchl1 Mus musculus 22223 23567262 0 0 R58388; MOUSE$UCHL1_03; Binding factors: mmu-miR-181b-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Uchl1 mmu-miR-302b beg:166 end:181 pic:3' GATGATTTTGTACC--TTCGTGAAT 5'& || .||||||| &5' ------------GGCTGAGCACTT- 3' Uchl1 mmu-miR-291a-3p beg:65 end:83 pic:3' CGTGTGTTTCACCTTCGTGAAA 5'& .||. ||||||| &5' ----GCAGCTTT--AGCACTT- 3' Uchl1 mmu-miR-294 beg:65 end:83 pic:3' TGTGTGTTTTCCCTTCGTGAAA 5'& .||. ||||||| &5' ----GCAGCTTT--AGCACTT- 3' Uchl1 mmu-miR-302a beg:65 end:84 pic:3' AGTGGTTTTGTACCT-TCGTGAAT 5'& .|| |||||||| &5' --------GCAGCTTTAGCACTTA 3' Uchl1 mmu-miR-302b beg:65 end:84 pic:3' GATGATTTTGTACCT-TCGTGAAT 5'& .|| |||||||| &5' --------GCAGCTTTAGCACTTA 3' Uchl1 mmu-miR-302d beg:65 end:84 pic:3' TGTGAGTTTGTACCT-TCGTGAAT 5'& .|| |||||||| &5' --------GCAGCTTTAGCACTTA 3' Uchl1 mmu-miR-295 beg:72 end:83 pic:3' TCTGAGTTTTCATCATCGTGAAA 5'& |||||||| &5' --------------TAGCACTT- 3' Uchl1 mmu-miR-9star beg:58 end:77 pic:3' TGAAAGCCAATAGATCGAAATA 5'& |.|||| | ||||||| &5' ----TTGGTTTGC-AGCTTTA- 3' Uchl1 mmu-miR-3072 beg:133 end:151 pic:3' TCTTCCGAAGGACCTCCCCCGT 5'& |||| || ||||||| &5' ---AGGCCACC---AGGGGGC- 3' Uchl1 mmu-miR-92astar beg:119 end:135 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& || ||| ||||||| &5' ------CCTCCA--CCCCACC- 3' Uchl1 mmu-miR-542-3p beg:140 end:159 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& ||| . ||||||||| &5' ---CAGGGGGC--TCTGTCACA 3' Uchl1 mmu-miR-203star beg:74 end:91 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& | ||| |||||||| &5' ----GCACTT---AGAACCAC- 3' Uchl1 mmu-miR-1894-5p beg:2 end:13 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& |||||||| &5' --------------GGGGAGAG 3' Uchl1 mmu-miR-466g beg:219 end:237 pic:3' ACACACACGTACACAGACATA 5'& || |. |||||||| &5' ----TG-GTTTCTGTCTGTA- 3' Uchl1 mmu-miR-106a beg:162 end:182 pic:3' GATGGACGTGACAATCGTGAAAC 5'& ||| .||| |||||||| &5' --ACCAG-GCTG--AGCACTTT- 3' Uchl1 mmu-miR-106b beg:167 end:182 pic:3' TAGACGTGACAGTCGTGAAAT 5'& .||| |||||||| &5' ------GCTG--AGCACTTT- 3' Uchl1 mmu-miR-106b beg:61 end:83 pic:3' TAGACGT-GACAGTCGTGAAAT 5'& .|.|||| || |.||||||| &5' GTTTGCAGCT-TTAGCACTT-- 3' Uchl1 mmu-miR-1188 beg:148 end:169 pic:3' AGGACCGG-GTTGGAGTGTGGT 5'& .|| |.| ||.|| |||||| &5' -TCT-GTCACAGCC--ACACCA 3' Uchl1 mmu-miR-130bstar beg:0 end:15 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& |. .||||.|||| &5' ------GTCT-GGGGAGAGAG- 3' Uchl1 mmu-miR-17 beg:162 end:182 pic:3' GATGGACGTGACATTCGTGAAAC 5'& ||| .||| |||||||| &5' --ACCAG-GCTG--AGCACTTT- 3' Uchl1 mmu-miR-181b beg:238 end:255 pic:3' TGGGTGGCTGTCGTTACTTACAA 5'& ||.|| ||.|||| &5' --------ACGGCCCTGGATGT- 3' Uchl1 mmu-miR-18b beg:164 end:182 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& ||| .|| || ||||.|| &5' ----CAG-GCT-GA-GCACTTT- 3' Uchl1 mmu-miR-1953 beg:165 end:185 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& || ||||| |||||||| &5' ----AGGCTGAGCACTTTCCC- 3' Uchl1 mmu-miR-1956 beg:239 end:253 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& |.||||||||. &5' ----------CGGCCCTGGAT- 3' Uchl1 mmu-miR-1968 beg:75 end:97 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& |||. |||||||. &5' ----CACTTAGAACCACAGCTGT- 3' Uchl1 mmu-miR-1982.1 beg:291 end:301 pic:3' GACACCCTCTTGTATCCCACTCT 5'& ||||||| &5' ----------------GGTGAGA 3' Uchl1 mmu-miR-20a beg:162 end:182 pic:3' GATGGA-CGTGATATTCGTGAAAT 5'& ||| || |.|||||||| &5' --ACCAGGC----TGAGCACTTT- 3' Uchl1 mmu-miR-20b beg:162 end:182 pic:3' GATGGA-CGTGATACTCGTGAAAC 5'& ||| || |||||||||| &5' --ACCAGGC----TGAGCACTTT- 3' Uchl1 mmu-miR-2140 beg:135 end:159 pic:3' TGGTGGTTCT---AGAC-GTGGA 5'& .||||||.|. |||| ||| &5' GCCACCAGGGGGCTCTGTCAC-- 3' Uchl1 mmu-miR-28star beg:250 end:266 pic:3' AGGTCGTCGAGTGTTAGATCAC 5'& | |.|. .|||||| &5' ----GTGGTTT---GTCTAGT- 3' Uchl1 mmu-miR-291a-3p beg:160 end:182 pic:3' CGTGTGTTTCACCTTCGTGAAA 5'& ||||| |.| .|||||||| &5' -CACACCAGGCT-GAGCACTTT 3' Uchl1 mmu-miR-294 beg:159 end:182 pic:3' TGTGTGTTTTCCC-TTCGTGAAA 5'& ||||| ||| .|||||||| &5' -CACACC--AGGCTGAGCACTTT 3' Uchl1 mmu-miR-296-5p beg:133 end:154 pic:3' TGTCCTAACTCCCCCCCGGGA 5'& |||| ||||||.|| &5' -CAGGCCACCA-GGGGGCTCT 3' Uchl1 mmu-miR-302a beg:161 end:181 pic:3' AGTGGTTTTGTACCTTCGTGAAT 5'& |||| |..| .||||||| &5' -CACC-AGGCT---GAGCACTT- 3' Uchl1 mmu-miR-302c beg:161 end:181 pic:3' GGTGACTTTGTACCTTCGTGAA 5'& ||| |..| .||||||| &5' -CACC-AGGCT---GAGCACTT 3' Uchl1 mmu-miR-302d beg:160 end:181 pic:3' TGTGAGTTTGTACCTTCGTGAAT 5'& |||| ||..| .||||||| &5' ACAC-CAGGCT---GAGCACTT- 3' Uchl1 mmu-miR-3473 beg:195 end:212 pic:3' CCGACTCGGTA-GAGAGGT 5'& | || |||||.| &5' ----GTACCTTGCTCTCTA 3' Uchl1 mmu-miR-384-5p beg:50 end:71 pic:3' TGTAACGGATCCTTAACAAATGT 5'& ||| ||||.|| &5' -----GCCCGCCCTTGGTTTGCA 3' Uchl1 mmu-miR-467a beg:61 end:84 pic:3' GCGTATATGTACGTC--CGTGAAT 5'& |. |.|| || ||||||| &5' -GTT--TGCA-GCTTTAGCACTTA 3' Uchl1 mmu-miR-467b beg:64 end:84 pic:3' GTATATGTACGTC-----CGTGAATG 5'& ||||| ||||||| &5' --------TGCAGCTTTAGCACTTA- 3' Uchl1 mmu-miR-467c beg:64 end:84 pic:3' GTGTATATGTACGTG--CGTGAAT 5'& |.|| || ||||||| &5' ------TGCA-GCTTTAGCACTTA 3' Uchl1 mmu-miR-666-5p beg:145 end:173 pic:3' CCGAG--AGTGTCGACACGGG-CGA 5'& ||||| ||||||| || ||| &5' GGCTCTGTCACAGCCACACCAGGCT 3' Uchl1 mmu-miR-673-3p beg:230 end:252 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& ||.| || |.||||.||| &5' --TGTA-AGTTA-CGGCCCTGGA 3' Uchl1 mmu-miR-692 beg:1 end:16 pic:3' CTCACTCCGCGAGTTTCTCTA 5'& ||.|| |.||||| &5' ---TGGGG-----AGAGAGA- 3' Uchl1 mmu-miR-693-5p beg:245 end:259 pic:3' CTTTTGAAAGCCTACACCGAC 5'& .||||||||.| &5' ---------TGGATGTGGTT- 3' Uchl1 mmu-miR-743a beg:206 end:233 pic:3' AGATG--AGTCGAACCACAGAAAG 5'& ||||| || .||||| ||| || &5' TCTACGGTCTCTTTGGTTTCTGTC 3' Uchl1 mmu-miR-743b-5p beg:160 end:178 pic:3' ACTACCTGTGGTCAGACTTGT 5'& ||||||| ||||.|| &5' ------ACACCAGGCTGAGCA 3' Uchl1 mmu-miR-764-5p beg:166 end:180 pic:3' TCCTCCTGTACACTCGTGG 5'& |.| |||||||. &5' -----GGC---TGAGCACT 3' Uchl1 mmu-miR-7a beg:80 end:102 pic:3' TGTTGTTTTAGTGAT--CAGAAGGT 5'& .|.|| ||| ||||||. &5' ----TAGAACCACAGCTGTCTTCT- 3' Uchl1 mmu-miR-7b beg:80 end:102 pic:3' TGTTGTTTTAGTGTT--CAGAAGGT 5'& .|.|| ||||. ||||||. &5' ----TAGAACCACAGCTGTCTTCT- 3' Uchl1 mmu-miR-881star beg:212 end:224 pic:3' TCTACACTGACAATAGAGAGAC 5'& .|||||.|| &5' -------------GTCTCTTTG 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Uchl1 mmu-miR-106a 63 84 AUGGACGU-GACAAUCGUGAAAC : |||| || ||||||||| GGUUUGCAGCU-UUAGCACUUA- Uchl1 mmu-miR-106b 63 84 -UAGACGU-GACAGUCGUGAAAU :|:|||| || |:||||||| GGUUUGCAGCU-UUAGCACUUA- Uchl1 mmu-miR-10b 87 115 UGUGUU--UA----AGC-CAAGAUGUCCC ||||: :| |:| ||||||||| CCACAGCUGUCUUCUUGCGUUCUACAGC- Uchl1 mmu-miR-127 133 156 CGGUUCGA--GUCUGCCUAGGCU |||:|| |||: || ||:| CCCAGGCCACCAGGGGGCUCUGU Uchl1 mmu-miR-130a 56 83 UACGGGAAAAU--UGUAA----CGUGAC |||||| :|| ||||| -CGCCCUUGGUUUGCAGCUUUAGCACUU Uchl1 mmu-miR-130b 56 83 UACGGGAAA-----GUAGUAA-CGUGAC |||||| || || ||||| -CGCCCUUGGUUUGCAGCUUUAGCACUU Uchl1 mmu-miR-138 154 174 CUAAGUGU---UGUGGUC-GA- ||||| ||||||| || --GUCACAGCCACACCAGGCUG Uchl1 mmu-miR-140 140 166 GAUGGUAUCCCAUU------UUGGUGAC |||| :||| |:|||| -CACCAGGGGGCUCUGUCACAGCCACA- Uchl1 mmu-miR-140* 230 259 -AGGCAC-CAAGA-UGGG----ACACCAU ||:|| ||| :||| |||||| GUCUGUAAGUUACGGCCCUGGAUGUGGUU Uchl1 mmu-miR-17-5p 156 183 -UGAUGGACGUGA--C-AUUCGUGAAAC || :|| ||| | |:|||||||| CACAGCCA-CACCAGGCUGAGCACUUUC Uchl1 mmu-miR-181b 227 256 -GGGUGGC------UGUCGUUACUUACAA |: |:| ||:|| ||:|||| UCUGUCUGUAAGUUACGGCCCUGGAUGUG Uchl1 mmu-miR-185 168 189 CUUGACG---GAAAGAGAGGU ::||| ||||| |||| AGGCUGAGCACUUUCCCUCCU Uchl1 mmu-miR-194 138 161 AGGUGUACCUCAACGACAAUGU- |||| ||:| |||| ||| GCCACCAGGGGGCUCUGUCACAG Uchl1 mmu-miR-20a 63 84 GAUGGACGU-GAUAUUCGUGAAAU : |||| || ||||||| -GGUUUGCAGCUUU-AGCACUUA- Uchl1 mmu-miR-20b 164 183 AUGGA-CGUGAUACUCGUGAAAC ||| || |||||||||| CACCAGGC----UGAGCACUUUC Uchl1 mmu-miR-217 229 259 -UAGG---UCAGU-CAAGGAC-UACGUCAU :||: |||:| | |||| |||::|| UGUCUGUAAGUUACGGCCCUGGAUGUGGUU Uchl1 mmu-miR-290 52 73 UUUUUCACGGG-GGU-AUCAAAC-UC- |||| || |:||||| || ------GGCCCGCCCUUGGUUUGCAGC Uchl1 mmu-miR-291a-3p 42 84 -CCGUGUGUUUC--------ACCU----------UCGUGAAA ||::|:|: :| ||| ||||||| AGGUGCGCGCGGCCCGCCCUUGGUUUGCAGCUUUAGCACUUA Uchl1 mmu-miR-292-3p 151 182 UGUGAGUUUUGGA-----CCG-C-CGUGAA- | ||| |:|| ||| | |||||| UCUGUCACAGCCACACCAGGCUGAGCACUUU Uchl1 mmu-miR-294 161 183 UGUGUGUUUUCCC-UUCGUGAAA- ||||| ||| :|||||||| CCACACC--AGGCUGAGCACUUUC Uchl1 mmu-miR-295 146 183 -UCUGAGUUUUCA------------UCA---UCGUGAAA- :|:||| || || |||||||| GGGGCUCU---GUCACAGCCACACCAGGCUGAGCACUUUC Uchl1 mmu-miR-296 134 155 UGUCCUAACUCCCCCCCGGGA- |||| ||||||:|| CCAGGCCACCA-GGGGGCUCUG Uchl1 mmu-miR-298 168 194 -CCUUCUUGUC---GGGAGGAGACGG || ||:|| ||||||| ||: AGGCUGAGCACUUUCCCUCCUGUGUG Uchl1 mmu-miR-299 1 21 UACAUACACCCUGCCAUUUGGU- || || |||| | :||||| --GUCUG-GGGAGAGAGAACCAG Uchl1 mmu-miR-302 163 182 AGUGGUUUUGUACCUUCGUGAAU ||||| ::| :||||||| ACACCA-GGCU---GAGCACUUU Uchl1 mmu-miR-302b 149 182 -GAUGAUUUUGUA--------CC--UUCGUGAA- || ||: ||| || :||||||| GCU-CUGUCACAGCCACACCAGGCUGAGCACUUU Uchl1 mmu-miR-302c 54 84 -GGUG---ACUU--UGUACCU-UCGUGAAC ||:| ||: :|| ||||||| CCCGCCCUUGGUUUGCAGCUUUAGCACUUA Uchl1 mmu-miR-302d 162 182 -UGUGAGUUUGUACCUUCGUGAA- |||| ||::| :||||||| CACAC-CAGGCU---GAGCACUUU Uchl1 mmu-miR-31 68 106 -GUCGAUA-CG-----------GUCGU----AGAACGGA ||||| || |||| |||||| GCAGCUUUAGCACUUAGAACCACAGCUGUCUUCUUGCG- Uchl1 mmu-miR-320 55 77 AAGCGGGAGAGUUGGGUCGAAAA ||||||: : ||||||| -CCGCCCUUGGUUUGCAGCUUUA Uchl1 mmu-miR-324-3p 133 157 -GGUCGUCGUGGA-CCCCGU--CACC |||| |||| ||||| || CCCAGGC-CACCAGGGGGCUCUGUC- Uchl1 mmu-miR-324-5p 19 50 GUGGUUAC-------GGGAUCCC-CUACGC- :||:|| ||||:|| |:|||| AGCCGAUCCCCCCUUCCCUGGGCAGGUGCGC Uchl1 mmu-miR-328 4 22 UGCCUUCCCGUCUCUCCCGGUC- ||| |||||| |||| -----UGGGGAGAGAGAACCAGC Uchl1 mmu-miR-330 230 263 AGAGACGU------CCGGG----ACACGAAACG- ||||:| ||||| |||| ||||: -GUCUGUAAGUUACGGCCCUGGAUGUGGUUUGUC Uchl1 mmu-miR-331 135 152 AAGAUCCUAUCCGGG---UCCCCG- ||||| :||||| --------CAGGCCACCAGGGGGCU Uchl1 mmu-miR-338 279 302 AGUUGUUUU--AGUGACUACGACCU- ||:|||| |::|||:|| || -GAAUAAAACUUUGCUGGUGA--GAG Uchl1 mmu-miR-341 9 28 UGACUGGC-UGGCUGGCUAGCU || | ||| :|||||| --AGAGAGAACCAGCCGAUCC- Uchl1 mmu-miR-346 37 60 UCUCCGUCCGUGAGC-CCGUCUGU :||||||::| || ||| :| -UGGGCAGGUGCGCGCGGCCCGCC Uchl1 mmu-miR-34a 156 186 UUGUUGG------UCGAUUCUGUGAC--GGU |||:|| :|||:|| |||| || CACAGCCACACCAGGCUGAG-CACUUUCCCU Uchl1 mmu-miR-34c 67 100 -CGUU--AGUCGA-----UUGAUGU-GACGGA- |||: |:||| ||| ||| |||:|| UGCAGCUUUAGCACUUAGAACCACAGCUGUCUU Uchl1 mmu-miR-351 134 172 -GUCCGA--GUUUCCCGAGGA------------GUCCCU ||||| ||::||||||: |||| CCAGGCCACCAGGGGGCUCUGUCACAGCCACACCAGGC- Uchl1 mmu-miR-370 14 47 -UUGGUCCA--AGGUGGGG-------UCGUCCG- |||||| ||| |||| :|||||: GAACCAGCCGAUCC-CCCCUUCCCUGGGCAGGUG Uchl1 mmu-miR-423 144 178 GACUCCCCG-GA-------------GUCUGGCUCGA :||||| || |||:|:|||| --AGGGGGCUCUGUCACAGCCACACCAGGCUGAGCA Uchl1 mmu-miR-424 281 299 AGGUUUUGUACUUAACGACGAC- :||||| |||||| || -AUAAAACU----UUGCUGGUGA Uchl1 mmu-miR-449 140 165 -UGGUCGAUUGUUAU-GUGACGGU- ||||| ::| ||| |||| CACCAGGGGGCUCUGUCACAGCCAC Uchl1 mmu-miR-449b 141 164 -GGUCGAUCGUUAC-GUGACGGA |||| :|| || ||| ||| ACCAGGGGGCUCUGUCACAGCCA Uchl1 mmu-miR-455-3p 42 72 -UCACAUAUA-CGGGC----ACCUGACGUA :||| ||||| ||| |||| AGGUGCGCGCGGCCCGCCCUUGGUUUGCAG Uchl1 mmu-miR-465-3p 226 252 -AGAU-GAA--UCUUU-CCGGGACUAG |||: || || | |||||||: UUCUGUCUGUAAGUUACGGCCCUGGA- Uchl1 mmu-miR-469 130 152 CCUGUGGUUCUAGUUACUUUCUCCGU |||| ||: || |:|:||| --CCACCCAGGCCACC--AGGGGGCU Uchl1 mmu-miR-486 144 162 GAGCCCCGUCGAGUCA-UGUCCU |||| |||| || |||| --AGGGG--GCUCUGUCACAGC- Uchl1 mmu-miR-500 22 50 GACUU---GGGAACGGG-----UCCACGUA || ||||| ||| ||||||: -CGAUCCCCCCUU-CCCUGGGCAGGUGCGC Uchl1 mmu-miR-501* 29 50 GUUUAGGAACGGGCCC----ACGUAA |||| ||:||| |||: ----CCCUUCCCUGGGCAGGUGCGC- Uchl1 mmu-miR-542-3p 142 161 AAAGUCAAUAGUUAGACAGUGU- ||| : ||||||||| --CCAGGGGGC--UCUGUCACAG Uchl1 mmu-miR-546 147 166 -CUGAGGCA----CGGUGGUA |:|||:|| ||||| GGGCUCUGUCACAGCCACA-- Uchl1 mmu-miR-615 143 174 UUCUCCCUC-------------UG-GGUCCGAGCCU ||||:| || ||||||| --CAGGGGGCUCUGUCACAGCCACACCAGGCUG--- Uchl1 mmu-miR-665 143 172 AUUCCCUG-GA----GUCGGA--GGACCA |:|||:| || ||||| || || CAGGGGGCUCUGUCACAGCCACACCAGGC Uchl1 mmu-miR-667 36 55 GAACCCGACCCAC-CGU-CCACAGU ||||| |||| ||: || -CUGGGCA-GGUGCGCGCGGC---- Uchl1 mmu-miR-670 130 150 AAGUGGUGUAU-GUGAGUCCCUA |||| || ||| |||||: -CCACC-CAGGCCAC-CAGGGGG Uchl1 mmu-miR-671 121 155 -GGAGGUCGGGGAGG-----------UCCCGAAGGA |||||| |||| || :||||| |: CCCUCCA-CCCCACCCAGGCCACCAGGGGGCU-CUG Uchl1 mmu-miR-673 122 157 -GAGGU--------UCC--UGGUCUC----GACACUC ||||| ||| |||||:| |||| CCUCCACCCCACCCAGGCCACCAGGGGGCUCUGUC-- Uchl1 mmu-miR-675-5p 146 170 UGACACCCGGGAAA-----GGCGUGGU- ||||:|| || ||||| ----GGGGCUCUGUCACAGCCACACCAG Uchl1 mmu-miR-678 121 152 -GGAGGUCAGGAA----CG-UGG--CUCUG- |||||| || || ||| |:|:| CCCUCCACCCCACCCAGGCCACCAGGGGGCU Uchl1 mmu-miR-679 140 164 -UGGUUCUCAGUGG-AGUGUCAGG- ||||:|:| |: |||||| || CACCAGGGGGCUCUGUCACAG-CCA Uchl1 mmu-miR-680 26 51 -GGGGGUAC--AGUCGUCUACGGG- ||||| | :||||:||| | CCCCCCUUCCCUGGGCAGGUGCGCG Uchl1 mmu-miR-681 144 175 -UCGACG-GACG--GUCGC-----UCCGAC- :| || |||: |||| |||||| AGGGGGCUCUGUCACAGCCACACCAGGCUGA Uchl1 mmu-miR-683 144 172 -CUCCUG------UGUCGAAUGUCGUCC- |:||:| ||||| ||| |||| AGGGGGCUCUGUCACAGCC-ACACCAGGC Uchl1 mmu-miR-689 126 152 CCUGGGGC-GGCUCG-----CCCCUGC ||||| || :|| ||||:| -CACCCCACCCAGGCCACCAGGGGGCU Uchl1 mmu-miR-690 247 272 AAACCAACACU---CGGAUC-GGAAA ||| ||||: |:|||| |||| -CUGGAUGUGGUUUGUCUAGUCCUUA Uchl1 mmu-miR-693-3p 156 175 AAUGUCGGUGUAGACUUUCGACG ||||||||| | |:|||| -CACAGCCACACC---AGGCUGA Uchl1 mmu-miR-693-5p 247 260 CUUUUGAAAGCCUACACCGAC :||||||||:| --------CUGGAUGUGGUUU Uchl1 mmu-miR-696 33 53 -GGGUGUCGUUCGUGUGCG- ||| :|||:|::|:||| UCCCUGGGCAGGUGCGCGCG Uchl1 mmu-miR-699 37 57 GCUCGGUCCA-GCGUGACGGA |:| ||||| |||:| ||| UGGG-CAGGUGCGCGCGGCCC Uchl1 mmu-miR-700 42 60 -CCACCUGAGCCAAGGGCGCAC |||| :| ||| ||||| AGGUGCGCGCGG--CCCGCC-- Uchl1 mmu-miR-705 123 145 ACGGGUGGGGUGGAG--GGUGG- :|||||||||| ||||| -CUCCACCCCACCCAGGCCACCA Uchl1 mmu-miR-709 182 213 AGGAGGACG----GAG------ACG-GAGG- |||||||: ||| ||| |||: CCCUCCUGUGUGUCUCGUACCUUGCUCUCUA Uchl1 mmu-miR-712* 34 54 GUUGUGGGCCC--CCACUGAGCGU- ||:||| |||| | |||: ----CCCUGGGCAGGUG-CGCGCGG Uchl1 mmu-miR-714 45 65 -CGCUG-GCUGGCCGGGAGCAGC ||| | ||:|| |||||:| UGCG-CGCGGCCCGCCCUUGG-- Uchl1 mmu-miR-715 36 55 GUGCGCCC--CCACACGUGCCUC :||| |||| ||:||| ---CUGGGCAGGUGCGCGCGGC- Uchl1 mmu-miR-744 91 119 -CGACA-----AU-CGGGA--UCGGGGCGU ||||| |: |::|| |||||| AGCUGUCUUCUUGCGUUCUACAGCCCCA-- Uchl1 mmu-miR-758 143 162 AUCACCUGGUCCAGUGUUU || ||:|: ||||||: CAGGGGGCUCUGUCACAGC Uchl1 mmu-miR-762 225 271 CGAGACAGG--------GCCGGGG---------------UCGGGG :||||||: ||||||: ||:||: UUUCUGUCUGUAAGUUACGGCCCUGGAUGUGGUUUGUCUAGUCCUU Uchl1 mmu-miR-763 137 175 -CGGUGA--CCA--AGAA------GGG-----UCGACC ||||| || ||| || :|||| GGCCACCAGGGGGCUCUGUCACAGCCACACCAGGCUGA Uchl1 mmu-miR-764-3p 39 61 -UGUCAACG-GUGAUACCGGA-GGA :||| ||| |:| |||| || GGCAGGUGCGCGC---GGCCCGCCC Uchl1 mmu-miR-764-5p 143 181 -UCCUCC-------------UGUA---C-ACUCGUGG- |||:|| ||| | |||||||: CAGGGGGCUCUGUCACAGCCACACCAGGCUGAGCACUU Uchl1 mmu-miR-770-3p 16 52 -GGUCGA------------GGUGCAGUCCGGGUGC- ||||| || | ||||: |:|| ACCAGCCGAUCCCCCCUUCCCUGGGCAGGUGCGCGC Uchl1 mmu-miR-7b 81 103 UUGUUUUAGUGUU--CAGAAGGU :|:|| ||||: ||||||: -UUAGAACCACAGCUGUCUUCUU Uchl1 mmu-miR-106a 175 182 AUGGA----CGUGACAA-----------------UCGUGAAAC ||| || |||| |||||||| CACCAGGGGGCUCUGUCACAGCCACACCAGGCUGAGCACUUUC Uchl1 mmu-miR-17-5p 175 182 -----------------UGAUGGACGUGA--C-AUUCGUGAAAC || :|| ||| | |:|||||||| CACCAGGGGGCUCUGUCACAGCCA-CACCAGGCUGAGCACUUUC Uchl1 mmu-miR-20a 175 182 GA------------------UGGACGUGAU---AUUCGUGAAAU :|| ||| |:|||||||| CACCAGGGGGCUCUGUCACAGCCA-CACCAGGCUGAGCACUUUC Uchl1 mmu-miR-20b 175 182 A-------------------UGGACGUGAU---ACUCGUGAAAC :|| ||| |||||||||| CACCAGGGGGCUCUGUCACAGCCA-CACCAGGCUGAGCACUUUC Uchl1 mmu-miR-291a-3p 76 83 --CCGUGUGUUUC--------ACCU----------UCGUGAAA || |:|: :| ||| ||||||| CAGGUGCGCGCGGCCCGCCCUUGGUUUGCAGCUUUAGCACUUA Uchl1 mmu-miR-291a-3p 174 181 CC---------------------GUGUGUUUCACCUUCGUGAAA ||||| |:| :|||||||| CCACCAGGGGGCUCUGUCACAGCCACACCAGGCU-GAGCACUUUC Uchl1 mmu-miR-294 174 181 ---------------------UGUGUGUUUUCCC-UUCGUGAAA :| |||| ||| :|||||||| CCACCAGGGGGCUCUGUCACAGC-CACACCAGGCUGAGCACUUUC Uchl1 mmu-miR-295 174 181 --------UCUGAGUUU------------UCAUCAUCGUGAAA :|:||| || |||||||| CCACCAGGGGGCUCUGUCACAGCCACACCAGGCUGAGCACUUUC Uchl1 mmu-miR-302 174 181 A------------------------GUGGUUUUGUACCUUCGUGAAU |||||:: | :||||||| CCACCAGGGGGCUCUGUCACAGCCACACCAGG-CU---GAGCACUUU Uchl1 mmu-miR-302c 76 83 --------------GGUG---ACUU--UGUACCU-UCGUGAAC ||:| ||: :|| ||||||| CAGGUGCGCGCGGCCCGCCCUUGGUUUGCAGCUUUAGCACUUA Uchl1 mmu-miR-302c 174 181 GGUGA--CUUUGUA----------------CC--UUCGUGAAC |||| | :| || :||||||| CCACCAGGGGGCUCUGUCACAGCCACACCAGGCUGAGCACUUU Uchl1 mmu-miR-320 69 76 AA--------------------GCGGGAGAGUUGGGUCGAAAA ||||||: : ||||||| CCCUGGGCAGGUGCGCGCGGCCCGCCCUUGGUUUGCAGCUUUA Uchl1 mmu-miR-331 142 149 AAGAUCCUA--------------------UCCG--GGUCCCCG |||| ||||||| UCUACAGCCCCAUCCCCUCCACCCCACCCAGGCCACCAGGGGG Uchl1 mmu-miR-542-3p 152 159 AAA-----------------------GUCAAUAGUUAGACAGUGU ||| : ||||||||| CAUCCCCUCCACCCCACCCAGGCCACCAGGGGGC--UCUGUCACAG Uchl1 mmu-miR-546 138 145 C----------------------------UGAGGCACGGUGGUA || || ||||||| GCGUUCUACAGCCCCAUCCCCUCCACCCCAC-CCAGGCCACCAG Uchl1 mmu-miR-764-5p 172 179 -------UCCUCC-------------UGUA---C-ACUCGUGG |||:|| ||| | |||||||: GGCCACCAGGGGGCUCUGUCACAGCCACACCAGGCUGAGCACUU Uchl1 mmu-miR-93 175 182 GA-------UG-GAC-GUGCUUG------------UCGUGAAAC :| ||| ||| |:| |||||||| CACCAGGGGGCUCUGUCAC-AGCCACACCAGGCUGAGCACUUUC Uchl1 mmu-miR-106a 164 182 aUGGACGUGACAAUCGUGAAAc ||| | :||| |||||||| cACCAG-GCTG--AGCACTTTc Uchl1 mmu-miR-106a 63 84 auggACGU-GACAAUCGUGAAac |||| || ||||||||| ggttTGCAGCT-TTAGCACTTag Uchl1 mmu-miR-106b 64 84 uAGACGU-GACAGUCGUGAAau |:|||| || |:||||||| gTTTGCAGCT-TTAGCACTTag Uchl1 mmu-miR-10b 87 115 uGUGUUUA------AGC-CAAGAUGUCcc ||||: | |:| ||||||||| cCACAGCTGTCTTCTTGCGTTCTACAGcc Uchl1 mmu-miR-130a 55 82 uaCGGGAA--AAUUGU----AACGUGAc |||||| || :|| | ||||| ccGCCCTTGGTTTGCAGCTTTAGCACTt Uchl1 mmu-miR-130b 55 82 uaCGGG----AAA-GUAGUAA-CGUGAc |||| ||| || | || ||||| ccGCCCTTGGTTTGCAGCTTTAGCACTt Uchl1 mmu-miR-138 152 171 cuaAGUGU---UGUGGUCga ||||| ||||||| ctgTCACAGCCACACCAGgc Uchl1 mmu-miR-140 139 166 GAUGGUAUCC-----CA-UUUUGGUGac | |||| :|| || | |:|||| CCACCAGGGGGCTCTGTCACAGCCACac Uchl1 mmu-miR-140* 231 258 AGGCA-CCAA-GAUGG----GACACCAu ||:|| ||| | :|| |||||| TCTGTAAGTTACGGCCCTGGATGTGGTt Uchl1 mmu-miR-17-5p 163 182 UGAUGGACGUGACAUUCGUGAAAc || ||| | :||| |||||||| AC-ACCAG-GCTG--AGCACTTTc Uchl1 mmu-miR-181b 234 255 ggguggcUGUCGUUACUUACAa ||:|| ||:|||| gtaagttACGGCCCTGGATGTg Uchl1 mmu-miR-185 170 188 cuugaCG-GAAAGAGAGGu || ||||| |||| gctgaGCACTTTCCCTCCt Uchl1 mmu-miR-20a 158 182 GAUGGACGUGAU---AUUCGUGAAAu | :|| ||| | |:|||||||| CAGCC-ACACCAGGCTGAGCACTTTc Uchl1 mmu-miR-20a 62 84 gauggACGU-GAUAUUCGUGAAau |||| || | ||||||| tggttTGCAGCT-TTAGCACTTag Uchl1 mmu-miR-20b 164 182 aUGGACGUGAUACUCGUGAAAc ||| | :| |||||||||| cACCAG-GC--TGAGCACTTTc Uchl1 mmu-miR-290 46 70 uuuuucaCGG--GGGUAUCAAACuc ||| ||| |:||||| gcgcgcgGCCCGCCCTTGGTTTGca Uchl1 mmu-miR-291a-3p 160 181 CCGUGUGUUUCACCUUCGUGAAA | ||||| |:| | |||||||| GCCACACCAGGCTG-AGCACTTT Uchl1 mmu-miR-292-3p 130 154 uGUGAGUUU--UGGACCGCCGUGAa ||| ||:: ||| || ||| || cCACCCAGGCCACCAGGGGGCTCTg Uchl1 mmu-miR-292-3p 155 180 uGUG-AGUUUUGGACC-GC-CGUGAA ||| | | ||| || :| |||||| tCACAGCCACACCAGGCTGAGCACTT Uchl1 mmu-miR-294 157 181 UGU--GUGUUUUCC-CUUCGUGAAA ||| |||| ||| :|||||||| ACAGCCACACCAGGCTGAGCACTTT Uchl1 mmu-miR-296 133 153 uguccuaacuccCCCCCGGGA ||||||:|| cccaggccaccaGGGGGCTCT Uchl1 mmu-miR-298 169 193 CCUUCUUGU---CGGGAGGAGACgg || ||:|| ||||||| || GGCTGAGCACTTTCCCTCCTGTGtg Uchl1 mmu-miR-302 155 181 AGUG--GUUUUGUACC--UUCGUGAAu |||| | | || || :||||||| TCACAGCCACACCAGGCTGAGCACTTt Uchl1 mmu-miR-302b 158 180 GAUGAUUUUGUACC--UUCGUGAA | :| | | || || :||||||| CAGCCACACCA-GGCTGAGCACTT Uchl1 mmu-miR-302c 155 181 gGUGAC--UUUGUACC--UUCGUGAAc ||| | | || || :||||||| tCACAGCCACACCAGGCTGAGCACTTt Uchl1 mmu-miR-302d 157 180 UGUGAGUUUGUACC--UUCGUGAA ||| || || || :||||||| ACAGCCACACCAGGCTGAGCACTT Uchl1 mmu-miR-31 90 106 GUCGAUACGGUCGUAGAACGga |||||:| | |||||| CAGCTGT-----CTTCTTGCgt Uchl1 mmu-miR-320 54 76 aaGCGGGAGAGUUGGGUCGAAAa ||||||: : ||||||| ccCGCCCTTGGTTTGCAGCTTTa Uchl1 mmu-miR-320 74 99 AAGCGGGAGAGUUGG-GUCGAAAA-- || || ||: |||| ||||| | TTAGCACTTAGAACCACAGCTGTCTT Uchl1 mmu-miR-324-3p 134 155 GGUCGUCGUGG-ACCCCGUCACc |||| : |||| ||||| || CCAG-GCCACCAGGGGGCTCTGt Uchl1 mmu-miR-324-5p 26 48 GUGGUUACGGGAUCCC--CUACGC | || | |||| ||| |:|||| CCCCCCTTCCCT-GGGCAGGTGCG Uchl1 mmu-miR-328 1 20 ugccuuCCCGUCUCUCCCGGUC ||| |||||| |||| --gtctGGGGAGAGAGAACCAG Uchl1 mmu-miR-330 229 261 AGAGACGU------CCGGG----ACACGAAACg | ||||:| ||||| |||| |||| TGTCTGTAAGTTACGGCCCTGGATGTGGTTTGt Uchl1 mmu-miR-331 127 149 aagauccuaUCCG--GGUCCCCg |||| ||||||| accccacccAGGCCACCAGGGGg Uchl1 mmu-miR-331 150 173 aAGAUCCUAUCCG---GGUCCccg |||: | || | ||||| cTCTGTCACAGCCACACCAGGctg Uchl1 mmu-miR-338 275 296 agUUGUUUUAGUGACUACGACCu || || | ||| |||||| ggAAGAATAAAACT-TTGCTGGt Uchl1 mmu-miR-341 7 28 ugaCUGGC-UGGCUGGCUAGcu || | ||| :|||||| ggaGAGAGAACCAGCCGATCcc Uchl1 mmu-miR-346 13 46 UCUCCGUCCGUGAG-----------CCCGUCugu ||| ||| |: || |||||| AGAACCAGCCGATCCCCCCTTCCCTGGGCAGgtg Uchl1 mmu-miR-34a 137 163 uuGUUGGU----CGAUUCUGUGACGGU | |||| ||| | ||| |||| ggCCACCAGGGGGCTCTGTCACAGCCA Uchl1 mmu-miR-34c 77 98 CGUUAGUCGAUUGAUGU-GACGGA ||| |:|| ||| ||| |||:|| GCACTTAG--AACCACAGCTGTCT Uchl1 mmu-miR-351 135 163 GUCCG--AGUUUCCCGAG---GAGUCccu ||||| ||::|||||| | ||| CAGGCCACCAGGGGGCTCTGTCACAGcca Uchl1 mmu-miR-370 15 45 UUGGUC--CAAGGUGGG------GUCGUCCg |||||| | ||| ||| :||||| AACCAGCCGATCCCCCCTTCCCTGGGCAGGt Uchl1 mmu-miR-423 143 177 GACUCCC----------CGG---AGUCUGGCUCGa | |:||| ||| |||:|:|||| CAGGGGGCTCTGTCACAGCCACACCAGGCTGAGCa Uchl1 mmu-miR-424 273 297 agguUUUGUACUU---AACGACGAC ||: || || |||||| || gaggAAGAATAAAACTTTGCTGGTG Uchl1 mmu-miR-449 141 163 UGGUCGAUUGUUAU-GUGACGGU ||||| ::| |: ||| |||| ACCAGGGGGCTCTGTCACAGCCA Uchl1 mmu-miR-449b 142 163 GGUCGAUCGUUAC-GUGACGGa |||| :|| || ||| ||| CCAGGGGGCTCTGTCACAGCCa Uchl1 mmu-miR-455-3p 48 71 ucacauauaCGGGCACCUGACGUa |||| ||| :|||| gcgcggcccGCCCTTGGTTTGCAg Uchl1 mmu-miR-465-3p 231 252 AGAUGAAUC-UUUCCGGGACuag |||: | || | ||||||| TCTG-TAAGTTACGGCCCTGgat Uchl1 mmu-miR-469 128 151 ccuGUGGUUCUAGUUACUUUCUCCGu |||| ||: || |:|:||| cccCACCCAGGCCA--CCAGGGGGCt Uchl1 mmu-miR-486 142 162 gagCCCCGUCGAGUCA-UGUCcu |||| |||| || |||| ccaGGGG--GCTCTGTCACAGcc Uchl1 mmu-miR-500 24 49 gacuuGGGAACGG----GUCCACGua ||||| || ||||||| atcccCCCTTCCCTGGGCAGGTGCgc Uchl1 mmu-miR-501* 25 50 guuuaGGAACGGGC----CCACGuaa |||| ||:| ||||| tccccCCTTCCCTGGGCAGGTGCgcg Uchl1 mmu-miR-542-3p 140 159 aaaGUCAAUAGUUAGACAGUGU ||| : | ||||||||| cacCAGGGGGC--TCTGTCACA Uchl1 mmu-miR-546 131 145 cUGAGGCACGGUGGUa || || ||||||| cAC-CCAGGCCACCAg Uchl1 mmu-miR-546 148 167 CUGAGGCA----CGGUGgua |:|||:|| ||||| GGCTCTGTCACAGCCACacc Uchl1 mmu-miR-615 129 155 uucucccUCUG--GGU---CCGAGCCu ||:| ||| ||||| | cccacccAGGCCACCAGGGGGCTCTGt Uchl1 mmu-miR-665 166 191 auUCC--CU-G-GAGUCGGAGGACca ||| || | ||: ||||||| ccAGGCTGAGCACTTTCCCTCCTGtg Uchl1 mmu-miR-667 30 49 gaacccGACCCACCGUCCACagu ||| |||||||| ccttccCTG---GGCAGGTGcgc Uchl1 mmu-miR-670 129 149 aaGUGGUGUAUGUGAGUCCCua |||| || :| ||||| ccCACC-CAGGCCACCAGGGgg Uchl1 mmu-miR-671 122 144 GGAGGUCGGGGAGGUCCCGAAGGa |||||| |||| || ||| || CCTCCA-CCCCACCCAGGCCACCa Uchl1 mmu-miR-671 153 176 ggAG-GUCGGGGAGGUCCCGAagga || ||||| | ||| |||| tgTCACAGCCACACCA-GGCTgagc Uchl1 mmu-miR-673 131 156 GAGGUUCC--UGGU--CUCGACACuc | || ||| |||| |:||| || CACCCAGGCCACCAGGGGGCTCTGtc Uchl1 mmu-miR-675-5p 142 168 uGACACCCGGGAAA-----GGCGUGGU | | ||||:|| | || ||||| cCAGGGGGCTCTGTCACAGCCACACCA Uchl1 mmu-miR-678 122 139 GGAGGUCAGGAACGUGGCUCUG |||||| || |||| ||:| CCTCCA--CC--CCACCCAGGC Uchl1 mmu-miR-679 141 163 UGGUUCUCAGUGG-AGUGUCAGg ||||:|:| | |: |||||| | ACCAGGGGGCTCTGTCACAGCCa Uchl1 mmu-miR-680 27 49 GGGGGUACAG--UCGUCUACGgg ||||| | | :||||:||| CCCCCTTCCCTGGGCAGGTGCgc Uchl1 mmu-miR-681 150 173 ucGAC-G-GACGGU-CGCUCCGAC ||| | | |||| | |||||| ctCTGTCACAGCCACACCAGGCTG Uchl1 mmu-miR-683 151 170 cucCUGUGUCGAAUGUCGUCC | |||||| ||| |||| tctGTCACAGC-CACACCAGG Uchl1 mmu-miR-689 125 151 ccUGGGGCGGCUC-----G-CCCCUGc ||||| || || | ||||:| ccACCCCACCCAGGCCACCAGGGGGCt Uchl1 mmu-miR-690 246 271 aaACCAACACU---CGGAUC-GGAAa ||| ||||: |:|||| |||| ccTGGATGTGGTTTGTCTAGTCCTTa Uchl1 mmu-miR-693-3p 155 174 AAUGUCGGUGUAGACUUUCGACg | ||||||||| | |:|||| TCACAGCCACACC---AGGCTGa Uchl1 mmu-miR-693-5p 239 259 cuuuugaaagCCUACACCGAc ||||||||:| ttacggccctGGATGTGGTTt Uchl1 mmu-miR-696 34 53 GGGUGUCGUU--CGUGUGCg ||| :|||: ||:|:|| CCCTGGGCAGGTGCGCGCGg Uchl1 mmu-miR-699 36 56 GCUCGGUCCA-GCGUGACGGa | :| ||||| |||:| ||| CTGGGCAGGTGCGCGCGGCCc Uchl1 mmu-miR-700 43 61 CCACCUGAGCCAAGGGCGcac |||| :| ||| ||||| GGTGCGCGCGG--CCCGCcct Uchl1 mmu-miR-705 113 134 acGGGU-GGGGUG--GAGGGUGG |||| |||| | | |||||| gcCCCATCCCCTCCAC-CCCACC Uchl1 mmu-miR-712* 30 59 guuguGGGCCC--CCA------CUGAGCGu ||:||| ||| |:| ||| ccttcCCTGGGCAGGTGCGCGCGGCCCGCc Uchl1 mmu-miR-714 46 66 CGCUGGCUGGCCGGGAGCagc ||| ||:|| |||||:| GCGCGCGGCCCGCCCTTGgtt Uchl1 mmu-miR-715 33 55 guGCGCCC--CCACACGUGCCuc | :||| |||| ||:||| tcCCTGGGCAGGTGCGCGCGGcc Uchl1 mmu-miR-744 92 120 CGACA----AUCG--GGA--UCGGGGcgu ||||| | || :|| |||||| GCTGTCTTCTTGCGTTCTACAGCCCCatc Uchl1 mmu-miR-763 138 174 CGGUG----ACCAAGA-AG---------GGU-CGACc ||||| || ||| || ||| |||| GCCACCAGGGGGCTCTGTCACAGCCACACCAGGCTGa Uchl1 mmu-miR-764-3p 40 60 uGUCAACG-GUGAUACC-GGAGGa ||| ||| |:| || || || gCAGGTGCGCGC---GGCCCGCCc Uchl1 mmu-miR-770-3p 40 59 gGUCGAGGUGCAGUCCGGGUGc ||| | |:|| | |||||:| gCAGGTGCGCG-C-GGCCCGCc Uchl1 mmu-miR-7b 80 102 uugUUUUAGUGUU--CAGAAGgu |:|| ||||: |||||| cttAGAACCACAGCTGTCTTCtt Uchl1 mmu-miR-93 158 182 GAUGGACGUGCU-UG--UCGUGAAAc | :|| ||| | :| |||||||| CAGCC-ACACCAGGCTGAGCACTTTc

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Uchl1 RAID00487089 mmu-miR-721 miRNA MIMAT0003515 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID00609859 mmu-miR-302b-3p miRNA MIMAT0003374 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID00836363 mmu-miR-106a-5p miRNA MIMAT0000385 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID01103070 mmu-miR-291a-3p miRNA MIMAT0000368 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID01270002 mmu-miR-295-3p miRNA MIMAT0000373 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID01387895 mmu-miR-302a-3p miRNA MIMAT0000380 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID01515263 mmu-miR-292a-5p miRNA MIMAT0000369 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID01572032 mmu-miR-181b-5p miRNA MIMAT0000673 Uchl1 mRNA 22223 Reporter Assay//RT-PCR//Western Blot 0.9526 Uchl1 RAID01772167 mmu-miR-6931-5p miRNA MIMAT0027762 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID01830510 mmu-miR-302d-3p miRNA MIMAT0003377 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID01878115 mmu-miR-497a-3p miRNA MIMAT0017247 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID01890713 mmu-miR-290a-5p miRNA MIMAT0000366 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID01938786 mmu-miR-155-5p miRNA MIMAT0000165 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID01994146 mmu-miR-130b-3p miRNA MIMAT0000387 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID02126605 mmu-miR-542-3p miRNA MIMAT0003172 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID02401595 mmu-miR-93-5p miRNA MIMAT0000540 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID02428772 mmu-miR-320-3p miRNA MIMAT0000666 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID02574892 mmu-miR-6715-3p miRNA MIMAT0029877 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID02599444 mmu-miR-106b-5p miRNA MIMAT0000386 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID02726473 mmu-miR-20b-5p miRNA MIMAT0003187 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID02927857 mmu-miR-20a-5p miRNA MIMAT0000529 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID03046627 mmu-miR-17-5p miRNA MIMAT0000649 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID03108933 mmu-miR-338-3p miRNA MIMAT0000582 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID03562689 mmu-miR-294-3p miRNA MIMAT0000372 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID04010016 mmu-miR-466g miRNA MIMAT0004883 Uchl1 mRNA 22223 Prediction 0.1828 Uchl1 RAID04423960 Gm2694 lncRNA 100040294 Uchl1 protein 22223 Microarray//RNA-seq 0.6606