DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT012374 mmu-miR-19b-3p Mus musculus Ube3b 117146 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT009541 mmu-miR-223-3p Mus musculus Ube3b 117146 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT007755 mmu-miR-301b-3p Mus musculus Ube3b 117146 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000154 mmu-miR-142-5p 117146 Ube3b ucaucacgaaagAUGAAAUAc |||||||| ccgccugggcagUACUUUAUu 2 10 668 688 [mm9:5:114870346-114870366:+] 0.5362 145 7 -7.12 -0.1178 MIMAT0004547 mmu-miR-203* 117146 Ube3b acAACUUGACAG-UUCUUGGUGa || | || | :|||||||| uaUUCACCUUACGGAGAACCACa 2 21 621 643 [mm9:5:114870299-114870321:+] 0.5362 155 7 -13.10 -0.4468 MIMAT0004574 mmu-miR-294* 117146 Ube3b ucuaUCCCGGAGGU-AAAAC-UCa :|||::|::: ||||| || agcaGGGGUUUUUGUUUUUGUAGg 2 19 1420 1443 [mm9:5:114871098-114871121:+] 0.5650 121 0 -13.98 -0.4597 MIMAT0004617 mmu-miR-148a* 117146 Ube3b ucagccucacaGAGUCUUGAAa :| ||||||| ccccauuucccUUAAGAACUUu 2 12 847 868 [mm9:5:114870525-114870546:+] 0.5250 143 7 -9.70 -0.5059 MIMAT0004628 mmu-miR-21* 117146 Ube3b cugucgGGUAGCUGACGACAAc :||| | |||||||| guuaugUCAUAG-CUGCUGUUu 2 17 1362 1382 [mm9:5:114871040-114871060:+] 0.5577 154 7 -16.44 -0.1398 MIMAT0000569 mmu-miR-330* 117146 Ube3b agagacguccGGGACAC-GAAACg |||| || ||||| ucaacuugacCCCUUUGUCUUUGa 2 14 1296 1319 [mm9:5:114870974-114870997:+] 0.5503 121 0 -15.36 -0.2478 MIMAT0004668 mmu-miR-138* 117146 Ube3b gggaccacaacacuUCAUCGGc ||||||| cuuaguaaccugcuAGUAGCCa 2 9 904 925 [mm9:5:114870582-114870603:+] 0.5250 140 7 -15.01 -0.3876 MIMAT0004704 mmu-miR-335-3p 117146 Ube3b ccaGUCCUCGUUAUUACUUUUu || ||| : |:||||||| ggaCA-GAGGGCUGAUGAAAAu 2 20 128 148 [mm9:5:114869806-114869826:+] 0.5245 157 7 -16.58 -0.1201 MIMAT0003127 mmu-miR-484 117146 Ube3b uagcccuccccUGACUCGGACu || ||||||| gcacagguaacACAGAGCCUGa 2 12 1230 1251 [mm9:5:114870908-114870929:+] 0.5503 147 7 -17.87 -0.2842 MIMAT0004789 mmu-miR-450a-3p 117146 Ube3b uaCUUACGUUU-C-GUAGGGGUUa | | | ||| | | ||||||| aaGCAAGAAAACGCCUUCCCCAAg 2 21 1028 1051 [mm9:5:114870706-114870729:+] 0.5250 150 7 -16.03 -0.1031 MIMAT0005460 mmu-miR-1224 117146 Ube3b gaGGUGGAGGGG-UCAGGAGUg || |||:||| |||||||| gcCCUCCUUCCCAAGUCCUCAg 2 20 455 476 [mm9:5:114870133-114870154:+] 0.5630 174 7 -32.94 -0.1309 MIMAT0003733 mmu-miR-665 117146 Ube3b uccCUGGAG--UCG--GAGGACCa ||:: | ||| ||||||| aguGAUUACAGAGCAACUCCUGGa 2 18 190 213 [mm9:5:114869868-114869891:+] 0.5245 143 7 -20.90 -0.4703 MIMAT0003736 mmu-miR-670 117146 Ube3b aaGUGGUGUAUGUGAGUCCCUa || || :| ||||||| agCAGGCCACGCUGUCAGGGAa 2 21 475 496 [mm9:5:114870153-114870174:+] 0.5446 148 7 -19.76 -0.1451 MIMAT0003736 mmu-miR-670 117146 Ube3b aaGUGGUGUAUGUGA-GUCCCUa || :|| | :|:| |||||| ggCAGUAC-UUUAUUCCAGGGAc 2 21 675 696 [mm9:5:114870353-114870374:+] 0.5362 122 6 -18.70 -0.3848 MIMAT0003894 mmu-miR-764-5p 117146 Ube3b uccuccUGUACACUCGUGg ::| ||||||| aaauuuGUACUUGAGCACa 2 14 1478 1496 [mm9:5:114871156-114871174:+] 0.5650 141 7 -10.76 -1.0782 MIMAT0003739 mmu-miR-673-5p 117146 Ube3b gaGGUUCCUG-GUCUCGAC-ACUc |:::|||| ||:|||| ||| caCUGGGGACAGAGGGCUGAUGAa 2 21 122 145 [mm9:5:114869800-114869823:+] 0.5245 131 0 -25.33 -0.2691 MIMAT0003898 mmu-miR-760 117146 Ube3b agggGUGUC---UGGGUCUCGGc ||||| || ||||||| ccugCACAGGUAACACAGAGCCu 2 17 1227 1249 [mm9:5:114870905-114870927:+] 0.5503 155 7 -24.86 -0.1433 MIMAT0003455 mmu-miR-679 117146 Ube3b ugGUUC--UCAGUGG--AGUGUCAGg ||:| :| |||: ||||||| gcCAGGGAGGCCACUGAGCACAGUCa 2 21 391 416 [mm9:5:114870069-114870094:+] 0.5630 146 7 -26.97 -0.2282 MIMAT0004826 mmu-miR-146b* 117146 Ube3b uggucuugacucagGGAUCCCg ||||||| cccuuugucuuugaCCUAGGGc 2 9 1306 1327 [mm9:5:114870984-114871005:+] 0.5503 140 7 -20.12 -0.1719 MIMAT0003487 mmu-miR-697 117146 Ube3b agAGGUGUCCUGGUCCUACAa ||: ||| :|||||||| uuUCUCCAGAUUCAGGAUGUu 2 20 866 886 [mm9:5:114870544-114870564:+] 0.5250 163 7 -24.83 -0.1143 MIMAT0003495 mmu-miR-705 117146 Ube3b acGGGUGGGGUGGAGG-GUGg | ||:|:||:|||| ||| caCACAUCUCAUCUCCACACc 2 19 749 769 [mm9:5:114870427-114870447:+] 0.4906 134 0 -29.80 -0.1198 MIMAT0003499 mmu-miR-709 117146 Ube3b agGAGGACGGA-GACGGAGg | |:||:|| ||||||| gcCACUUGUCUCCUGCCUCa 2 18 922 941 [mm9:5:114870600-114870619:+] 0.5250 160 7 -28.08 -0.3564 MIMAT0003499 mmu-miR-709 117146 Ube3b aggaggaCGGAGACGGAGg |:| ||||||| cagcaaaGUCCCUGCCUCu 2 13 326 344 [mm9:5:114870004-114870022:+] 0.5630 148 7 -19.78 -0.1377 MIMAT0003500 mmu-miR-710 117146 Ube3b gaGUUGAGAG--GGGUUCUGAACc :||||| : |:|||||||| ggUAACUCGUGGACUAAGACUUGu 2 21 1442 1465 [mm9:5:114871120-114871143:+] 0.5650 159 7 -21.81 -0.5434 MIMAT0004238 mmu-miR-743a 117146 Ube3b agaUGAG-UCGAACCACAGAAAg |||: | | ||||||| ucaACUUGACCCCUUUGUCUUUg 2 20 1296 1318 [mm9:5:114870974-114870996:+] 0.5503 142 7 -9.61 -0.2552 MIMAT0004840 mmu-miR-743b-3p 117146 Ube3b agauAAGUCGUACUACAGAAAg || | | ||||||| caacUUGACCCCUUUGUCUUUg 2 19 1297 1318 [mm9:5:114870975-114870996:+] 0.5503 142 7 -6.66 -0.2552 MIMAT0004848 mmu-miR-883a-5p 117146 Ube3b caUUGACGAUGAA-----G-AGAGUCGu |:|||||::|| | ||||||| auAGCUGCUGUUUGAUGACAUCUCAGCa 2 21 1370 1397 [mm9:5:114871048-114871075:+] 0.5650 154 7 -26.40 -0.4585 MIMAT0004870 mmu-miR-453 117146 Ube3b acguUCGAGUGAUACUCCGUUGGa :|| : :| |||||||| caguGGCCUCUUCCCAGGCAACCa 2 21 355 378 [mm9:5:114870033-114870056:+] 0.5630 148 7 -17.12 -0.2922 MIMAT0004890 mmu-miR-509-5p 117146 Ube3b uacuaaCGGUGU-AAGACCUCAu ||| || ||||||||| agaacaGCC-CAUUUCUGGAGUa 2 17 566 587 [mm9:5:114870244-114870265:+] 0.5362 157 7 -23.25 -0.4065 MIMAT0004934 mmu-miR-872 117146 Ube3b ggacuugauuguUCAUUGGAa |||||||| ggcccagggcuuAGUAACCUg 2 10 895 915 [mm9:5:114870573-114870593:+] 0.5250 145 7 -17.58 -0.1146 MIMAT0005848 mmu-miR-466j 117146 Ube3b aaUGUGUGU----ACGUGUACG-UGUGu |||| || || : |||| |||| agACACCCAAGGUUGGGGAUGCUACACa 2 22 82 109 [mm9:5:114869760-114869787:+] 0.5328 120 0 -18.42 -0.1608 MIMAT0005849 mmu-miR-1191 117146 Ube3b aucccGAUGUAUC--AUUCUGAc || |:|:| ||||||| gguaaCU-CGUGGACUAAGACUu 2 17 1442 1463 [mm9:5:114871120-114871141:+] 0.5650 145 7 -13.25 -0.1805 MIMAT0005858 mmu-miR-1197 117146 Ube3b ucuuCAUCUGGUACACAGGAu ||: |:|| ||||||| gccuGUGCAUCA-GUGUCCUa 2 18 516 535 [mm9:5:114870194-114870213:+] 0.5311 155 7 -19.50 -0.5280 MIMAT0007875 mmu-miR-1898 117146 Ube3b cuaGGGGACACUUGGAACUGGa || | | || ||||||| gcaCCGAUAUCAA-CUUGACCc 2 20 1287 1307 [mm9:5:114870965-114870985:+] 0.5503 149 7 -14.17 -0.3873 MIMAT0009399 mmu-miR-1935 117146 Ube3b ucUC-UAGGCGGUCGGA-GACGGa || | || |: |:|| ||||| cuAGUAGCCACUUGUCUCCUGCCu 2 21 916 939 [mm9:5:114870594-114870617:+] 0.5250 123 0 -20.69 -0.2007 MIMAT0009408 mmu-miR-1943 117146 Ube3b agguccacGGGUCUAGGAGGGAa ||::|: ||||||| acugcgcuCCUGGGCCCUCCCUu 2 16 823 845 [mm9:5:114870501-114870523:+] 0.5250 155 7 -25.80 -0.1048 MIMAT0009426 mmu-miR-1955 117146 Ube3b uuuucGACGUCACGUAGGACCCUGa :||| | : :||||||| ggcgcUUGCUCUUUUGUCUGGGACc 2 21 779 803 [mm9:5:114870457-114870481:+] 0.5250 148 7 -20.28 -0.3518 MIMAT0009459 mmu-miR-1982* 117146 Ube3b ggAGGGGUCCUGGGAGGGUu |:|::: |||||||| ggUUCUUGUCUCCCUCCCAc 2 19 945 964 [mm9:5:114870623-114870642:+] 0.5250 150 7 -21.74 -0.1211 MIMAT0011211 mmu-miR-2135 117146 Ube3b caaaGCCGGGGUUCU-GGAGa | ||||: ||| |||| cccaCAGCCCUCAGACCCUCu 2 17 50 70 [mm9:5:114869728-114869748:+] 0.5411 124 0 -20.54 -0.1112 MIMAT0011212 mmu-miR-2136 117146 Ube3b guguagaGUCAGUUGUGGGUc || :||||||| caauagcCAUGAGACACCCAa 2 15 71 91 [mm9:5:114869749-114869769:+] 0.5411 142 7 -13.44 -0.2899 MIMAT0011222 mmu-miR-2146 117146 Ube3b guguacCUUGGGAAGAGGUg ||| |:||||||| ccuuaaGAA-CUUUCUCCAg 2 15 856 874 [mm9:5:114870534-114870552:+] 0.5250 152 7 -15.29 -0.4009 MIMAT0013803 mmu-miR-2861 117146 Ube3b ggcggGCGGCGGUCCGGGg | |:| ||||||| uuuugCACUGACAGGCCCu 2 15 711 729 [mm9:5:114870389-114870407:+] 0.4835 150 7 -23.85 -0.1230 MIMAT0000141 mmu-miR-130a 117146 Ube3b uacgggaaaauuguAACGUGAc ||||||| cagaguccguccuuUUGCACUg 2 9 699 720 [mm9:5:114870377-114870398:+] 0.5099 140 7 -18.39 -0.1062 MIMAT0000162 mmu-miR-152 117146 Ube3b gguuCAAGACAGUACGUGACu || || | ||||||| guccGUCCUUU--UGCACUGa 2 18 703 721 [mm9:5:114870381-114870399:+] 0.5099 146 7 -16.05 -0.2808 MIMAT0000163 mmu-miR-153 117146 Ube3b cuagugaaaacacuGAUACGUu ||||||| gccucgccaagccuCUAUGCAc 2 9 305 326 [mm9:5:114869983-114870004:+] 0.5630 140 7 -10.52 -0.1179 MIMAT0000213 mmu-miR-184 117146 Ube3b ugggaauAGUCAAGAGGCAGGu |||| ||||||| agggacuUCAG-AGUCCGUCCu 2 16 691 711 [mm9:5:114870369-114870389:+] 0.5099 145 7 -18.54 -0.1583 MIMAT0000373 mmu-miR-295 117146 Ube3b ucugaguuuucAUCAUC-GUGAAa |||||| ||||| uaguaaccugcUAGUAGCCACUUg 2 13 906 929 [mm9:5:114870584-114870607:+] 0.5250 124 0 -11.30 -0.1628 MIMAT0000379 mmu-miR-301a 117146 Ube3b cgaaaCUGUUAUGAUAACGUGAc | | :| || ||||||| ucagaGUCCGUCCUUUUGCACUg 2 19 698 720 [mm9:5:114870376-114870398:+] 0.5099 154 7 -14.47 -0.1072 MIMAT0000516 mmu-miR-148a 117146 Ube3b ugUUUCAAG-A-CAUCACGUGACu |:||| | | | ||||||| ucAGAGUCCGUCCUUUUGCACUGa 2 21 698 721 [mm9:5:114870376-114870399:+] 0.5099 146 7 -19.23 -0.3001 MIMAT0000533 mmu-miR-26a 117146 Ube3b ucgGAUAGGACCUA---AUGAACUu || | :| || ||||||| gggCUUUAUUAAAUUUGUACUUGAg 2 20 1468 1492 [mm9:5:114871146-114871170:+] 0.5650 142 7 -13.41 -0.2192 MIMAT0000534 mmu-miR-26b 117146 Ube3b ugGAUAGGACUUA---AUGAACUu || | :| ||| ||||||| ggCUUUAUUAAAUUUGUACUUGAg 2 20 1469 1492 [mm9:5:114871147-114871170:+] 0.5650 150 7 -11.40 -0.2192 MIMAT0000538 mmu-miR-31 117146 Ube3b gucgauacggucguAGAACGGa ||||||| gugaggcuuucuucUCUUGCCc 2 9 220 241 [mm9:5:114869898-114869919:+] 0.5245 140 7 -15.28 -0.1046 MIMAT0000555 mmu-miR-324-5p 117146 Ube3b uguGGUUACGGGAUCCCCUACGc |||| | | |||||||| cacCCAAGG---UUGGGGAUGCu 2 21 85 104 [mm9:5:114869763-114869782:+] 0.5328 152 7 -20.21 -0.1688 MIMAT0000580 mmu-miR-148b 117146 Ube3b ugUUUCAAG-A-CACUACGUGACu |:||| | | | ||||||| ucAGAGUCCGUCCUUUUGCACUGa 2 21 698 721 [mm9:5:114870376-114870399:+] 0.5099 146 7 -19.88 -0.3001 MIMAT0000597 mmu-miR-346 117146 Ube3b ucuccGUCCGUGAGCCCGUC-UGu ||| |:| :|||||| || gugccCAGCCGCCUGGGCAGUACu 2 19 660 683 [mm9:5:114870338-114870361:+] 0.5362 130 0 -23.07 -0.1318 MIMAT0003188 mmu-miR-503 117146 Ube3b gacgucauGACAAGGGCG-ACGAu ||||| ||| |||| caccgccuCUGUUGGCGCUUGCUc 2 16 766 789 [mm9:5:114870444-114870467:+] 0.5078 123 0 -16.69 -0.2431 MIMAT0004186 mmu-miR-301b 117146 Ube3b cgaaaCUGUUAUGGUAACGUGAc | | :| |: ||||||| ucagaGUCCGUCCUUUUGCACUg 2 19 698 720 [mm9:5:114870376-114870398:+] 0.5099 150 7 -16.57 -0.1072

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G069744 Ube3b Mus musculus 117146

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ube3b mmu-miR-2136 beg:75 end:91 pic:3' GTGTAGAGTCAGTTGTGGGTC 5'& || .||||||| &5' -------CATGAGACACCCA- 3' Ube3b mmu-miR-26bstar beg:560 end:573 pic:3' CTCGGTTCATTACCTCTTGTCC 5'& |||||||||| &5' -----------TGGAGAACAG- 3' Ube3b mmu-miR-708 beg:1388 end:1404 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& |.|||| ||||||| &5' CTCAGC---------AGCTCCT- 3' Ube3b mmu-miR-28 beg:264 end:279 pic:3' GAGTTATCTGACACTCGAGGAA 5'& |||||||||||| &5' ---------CTGTGAGCTCCT- 3' Ube3b mmu-miR-708 beg:265 end:279 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& |||.||||||| &5' -----------TGTGAGCTCCT- 3' Ube3b mmu-miR-28 beg:381 end:391 pic:3' GAGTTATCTGACACTCGAGGAA 5'& ||||||| &5' --------------AGCTCCT- 3' Ube3b mmu-miR-127star beg:1150 end:1169 pic:3' TAGTC-TCGGGAGACTCGAAGTC 5'& .| .||.| | ||||||| &5' ---GGTGGCTC-C--AGCTTCA- 3' Ube3b mmu-miR-483star beg:21 end:39 pic:3' TTCTGCCCTCCCC--TCCTCACT 5'& ||| ||||||| &5' -------GAGCCCCCAGGAGTG- 3' Ube3b mmu-miR-697 beg:867 end:887 pic:3' AGAGGTGTCCTGGTCCTACAA 5'& |||||| | .||||||||| &5' TCTCCAGAT--TCAGGATGTT 3' Ube3b mmu-miR-138star beg:909 end:925 pic:3' GGGACCACAACACTTCATCGGC 5'& |||| ||||||| &5' -CCTGCT-------AGTAGCC- 3' Ube3b mmu-miR-2861 beg:711 end:730 pic:3' GGCG-GGCGGCGGTCCGGGG 5'& .|| |.| |||||||. &5' -TGCACTGA---CAGGCCCT 3' Ube3b mmu-miR-504 beg:403 end:423 pic:3' CTATCTCACGTCTGGTCCCAGA 5'& ||| ||| .|||||||| &5' ----GAGCACAG-TCAGGGTCT 3' Ube3b mmu-miR-669h-5p beg:107 end:124 pic:3' CGTGAGTTGATATGTG-GGTACGTA 5'& .|.| | ||||||| &5' ----------GTGCCCTCCATGCA- 3' Ube3b mmu-miR-465a-3p beg:961 end:971 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||||| &5' --------------CCCTGAT- 3' Ube3b mmu-miR-465b-3p beg:961 end:971 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||||| &5' --------------CCCTGAT- 3' Ube3b mmu-miR-465c-3p beg:961 end:971 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||||| &5' --------------CCCTGAT- 3' Ube3b mmu-miR-705 beg:946 end:966 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& |. .|.| ||||||||| &5' --CTTGTCTC-CCTCCCACC 3' Ube3b mmu-miR-509-5p beg:569 end:588 pic:3' TACTAACGGTGT-AAGACCTCAT 5'& ||| || |||||||||| &5' ------GCC-CATTTCTGGAGTA 3' Ube3b mmu-miR-186star beg:1003 end:1017 pic:3' GGGTTTTTTAAGTGGAATCCCG 5'& || |||||||| &5' -----------CAGCTTAGGGC 3' Ube3b mmu-miR-203star beg:631 end:643 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& .|||||||| &5' ------------GAGAACCAC- 3' Ube3b mmu-miR-214star beg:712 end:727 pic:3' CGTGTCGTTCACATCTGTCCGT 5'& |||| ||||||| &5' GCACT---------GACAGGC- 3' Ube3b mmu-miR-337-3p beg:720 end:739 pic:3' TCCGTAGTATATCCTCGACTT 5'& |||| |.||||||||. &5' AGGCCC----TGGGAGCTGAG 3' Ube3b mmu-miR-696 beg:1252 end:1271 pic:3' GGGTGTCGTTCGTGTGCG 5'& ..|||||..||||||| &5' -TTACAGCGGGCACACG- 3' Ube3b mmu-miR-423-5p beg:972 end:990 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& ..|||| || ||||||| &5' GGAGTC-----CTG-GCCCCTC- 3' Ube3b mmu-miR-453 beg:359 end:378 pic:3' ACGTTCGAGTGATACTCCGTTGGA 5'& || ||| |||||||| &5' -GC---CTCTTCCC-AGGCAACC- 3' Ube3b mmu-miR-1197 beg:517 end:536 pic:3' TCTTCATCTGGTACACAGGAT 5'& ||. |.|| |||||||| &5' ----GTGCATCA-GTGTCCTA 3' Ube3b mcmv-miR-m01-1 beg:215 end:237 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& |.|| |.| ||||.|||| &5' CTGTGAGGCT---TTCTTCTCT 3' Ube3b mcmv-miR-m01-2 beg:797 end:815 pic:3' TGGCAAGGTTGGGCTAAGAGAAG 5'& .|||. ||||||||. &5' --------GACCTCATTCTCTTT 3' Ube3b mcmv-miR-m21-1 beg:552 end:565 pic:3' GCCGAACTTGCACAGGGGATA 5'& ||| ||||||. &5' ---------CGT-TCCCCTG- 3' Ube3b mcmv-miR-m21-1 beg:919 end:936 pic:3' GCCGAACTTGCACAGGGGATA 5'& || || ||||.|||. &5' --GCC---ACTTGTCTCCTG- 3' Ube3b mcmv-miR-M23-2 beg:139 end:158 pic:3' GGCGAACTGGCTCC-GGGGGTA 5'& ||| |||||| &5' -----TGAAAATAACCCCCCA- 3' Ube3b mghv-miR-M1-1 beg:561 end:583 pic:3' TTTCCTTCATGCC-GGTAAAGAT 5'& |.|| || | ||||||||. &5' ----GGAGAACAGCCCATTTCTG 3' Ube3b mghv-miR-M1-3 beg:1073 end:1094 pic:3' TTCGCGTTGAGGAC--GAGTGGAG 5'& |.|| |||| |||||.|. &5' --GTGC----CCTGTTCTCACTTT 3' Ube3b mghv-miR-M1-3 beg:753 end:764 pic:3' TTCGCGTTGAGGACGAGTGGAG 5'& ||||.||| &5' --------------CTCATCTC 3' Ube3b mghv-miR-M1-7-5p beg:610 end:631 pic:3' TCCAATGGCGTGG---AGGTGGAAA 5'& |.|| || |.|||||| &5' ------CTGCCCCCTATTCACCTT- 3' Ube3b mghv-miR-M1-8 beg:18 end:40 pic:3' CTGGTTTGGGGGTCACTCACGA 5'& || .|.||||||| |||||. &5' -ACAGAGCCCCCAG-GAGTGT- 3' Ube3b mmu-let-7a beg:325 end:344 pic:3' TTGATATGTTGGAT-GATGGAGT 5'& .||| ||.|||| &5' ------GCAAAGTCCCTGCCTC- 3' Ube3b mmu-let-7a beg:922 end:942 pic:3' TTGATATGTT-GGATGATGGAGT 5'& || .|| ||.||||| &5' ------ACTTGTCTCCTGCCTCA 3' Ube3b mmu-let-7b beg:918 end:942 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& |.|||| .|| ||.||||| &5' AGCCACTTG-TCTCCTGCCTCA 3' Ube3b mmu-let-7b beg:311 end:342 pic:3' TTGG-----TGTGTTGGAT----GATGGAGT 5'& |.|| .||||.| ||.|||| &5' AGCCTCTATGCACAGCAAAGTCCCTGCCTC- 3' Ube3b mmu-let-7c beg:325 end:344 pic:3' TTGGTATGTTGGAT-GATGGAGT 5'& .||| ||.|||| &5' ------GCAAAGTCCCTGCCTC- 3' Ube3b mmu-let-7c beg:920 end:942 pic:3' TTGGTATGTTGGATGATGGAGT 5'& |.||| .|| ||.||||| &5' AGCCACTTG-TCTCCTGCCTCA 3' Ube3b mmu-let-7c beg:1286 end:1311 pic:3' TTGG-TAT-GTTGGATGATGGAGT 5'& ||| ||| ||||.|. |||. &5' -ACCGATATCAACTTGACCCCTT- 3' Ube3b mmu-let-7d beg:325 end:345 pic:3' TTGATACGTTGGAT-GATGGAGA 5'& |||| ||.||||| &5' ------GCAAAGTCCCTGCCTCT 3' Ube3b mmu-let-7d beg:912 end:941 pic:3' TTGATACGTTGGAT-------GATGGAGA 5'& .||| |.|.|| ||.|||| &5' -GCTA-GTAGCCACTTGTCTCCTGCCTC- 3' Ube3b mmu-let-7e beg:922 end:942 pic:3' TTGATATGTT-GGAGGATGGAGT 5'& || .|||||.||||| &5' ------ACTTGTCTCCTGCCTCA 3' Ube3b mmu-let-7e beg:322 end:344 pic:3' TTGATATGTTGGA----GGATGGAGT 5'& |||.| |||.|||| &5' ------ACAGCAAAGTCCCTGCCTC- 3' Ube3b mmu-let-7f beg:325 end:344 pic:3' TTGATATGT--TAGATGATGGAGT 5'& .|| .|| ||.|||| &5' ------GCAAAGTCC-CTGCCTC- 3' Ube3b mmu-let-7f beg:922 end:942 pic:3' TTGATATGT-TAGATGATGGAGT 5'& || .||| ||.||||| &5' ------ACTTGTCTCCTGCCTCA 3' Ube3b mmu-let-7g beg:325 end:344 pic:3' TTGACATGTTTGAT-GATGGAGT 5'& .|||| | ||.|||| &5' ------GCAAAGTCCCTGCCTC- 3' Ube3b mmu-let-7g beg:922 end:942 pic:3' TTGACATGTTT-GATGATGGAGT 5'& || || ||.||||| &5' ------ACTTGTCTCCTGCCTCA 3' Ube3b mmu-let-7i beg:921 end:942 pic:3' TTGTC-GTGTTT-GATGATGGAGT 5'& | ||| || ||.||||| &5' ----GCCACTTGTCTCCTGCCTCA 3' Ube3b mmu-let-7i beg:322 end:344 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& |||||| ||.|||| &5' -ACAGCAAAGTCC-CTGCCTC- 3' Ube3b mmu-miR-103 beg:1365 end:1389 pic:3' AGTATCGG-GACATGTTAC-GACGA 5'& |||||||. |||| ..||| | &5' TCATAGCTGCTGTTTGATGAC---- 3' Ube3b mmu-miR-106a beg:667 end:686 pic:3' GATGGACGTGACAATCGTGAAAC 5'& .|||| .| ||.||||| &5' --GCCTGGGC----AGTACTTT- 3' Ube3b mmu-miR-106b beg:1074 end:1095 pic:3' TAGACGTGACAGTCGTGAAAT 5'& ||| ||||. ||||||| &5' ---TGCCCTGTTCTCACTTTA 3' Ube3b mmu-miR-106b beg:667 end:687 pic:3' TAGACGTGACA-GTCGTGAAAT 5'& || ||| |||.|||||| &5' ----GC-CTGGGCAGTACTTTA 3' Ube3b mmu-miR-10a beg:28 end:50 pic:3' GTGTTTAAGCCTAGATGTCCCAT 5'& || .|.| .|| ||||||| &5' CAGGAGTGTGGC----CAGGGTA 3' Ube3b mmu-miR-10b beg:28 end:50 pic:3' GTGTTTAAGCCAAGATGTCCCAT 5'& || .|.| .|| ||||||| &5' CAGGAGTGTGGC----CAGGGTA 3' Ube3b mmu-miR-1188 beg:827 end:852 pic:3' AGGA-CCGGGTTGGAGTGTGGT 5'& |||| ||||| |||. | ||| &5' TCCTGGGCCCTCCCTTTCCCCA 3' Ube3b mmu-miR-1188 beg:975 end:999 pic:3' AGGACCGGGTTGGA-GTGTGGT 5'& ||||||||| ||| ||| || &5' TCCTGGCCCCTCCTCCACTCC- 3' Ube3b mmu-miR-1190 beg:1260 end:1284 pic:3' CTGTCTCCCCTTGGAGTCGACT 5'& |.|| ||||. |.||.|| &5' GGCACACGGGAGAGTTAGTTG- 3' Ube3b mmu-miR-1191 beg:1437 end:1463 pic:3' ATCCC--GATGTATC--ATTCTGAC 5'& |||| || |.|.| ||||||| &5' TAGGTAACT-CGTGGACTAAGACT- 3' Ube3b mmu-miR-1193 beg:354 end:364 pic:3' CTATCATTTTGCCCACTGGAT 5'& |||.||| &5' -------------GTGGCCT- 3' Ube3b mmu-miR-1198 beg:1000 end:1021 pic:3' GGTTCGGTCG-GTCCTTGTGTAT 5'& .||||||| .||| .||| &5' --GAGCCAGCTTAGGGCTACA-- 3' Ube3b mmu-miR-122 beg:815 end:833 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& || ||||. .|.|||| &5' CACACACT------GCGCTCC- 3' Ube3b mmu-miR-1224 beg:454 end:476 pic:3' GAGGTGGAGGGG-TCAGGAGTG 5'& || |||.||| |||||||| &5' --CCTCCTTCCCAAGTCCTCA- 3' Ube3b mmu-miR-125a-3p beg:850 end:873 pic:3' CCGAGGG--TTCTTGGAGT-GGACA 5'& .|||| ||||||.|. || &5' --TTCCCTTAAGAACTTTCTCC--- 3' Ube3b mmu-miR-125a-5p beg:997 end:1016 pic:3' AGTGTCCAATTTCCCA-GAGTCCCT 5'& |..|| ||.|||| &5' --------TGGAGCCAGCTTAGGG- 3' Ube3b mmu-miR-125a-5p beg:474 end:496 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& .|||| | ||||||| &5' --GCAGGCCACGC--TGTCAGGGA 3' Ube3b mmu-miR-125b-3p beg:1037 end:1065 pic:3' TCG--AGGG--TTCTCGGAT-TGGGCA 5'& || |||| |.||||||. || || &5' -GCCTTCCCCAAGGAGCCTGCACA-GT 3' Ube3b mmu-miR-125b-3p beg:581 end:602 pic:3' TCGAGGGTTCTCGGATTGGGCA 5'& ||. ||| ||||||| .|.|| &5' AGTACCC-AGAGCCT-GCTCG- 3' Ube3b mmu-miR-125b-3p beg:886 end:916 pic:3' TCGA----GGGTTCTCGG---ATTGGGCA 5'& .|| ||||.| ||. |||||.| &5' GGCAGAGGCCCAGG-GCTTAGTAACCTG- 3' Ube3b mmu-miR-125b-5p beg:473 end:496 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& .||.| | | ||||||| &5' --GCAGGCCACGCTGTCAGGGA 3' Ube3b mmu-miR-130a beg:704 end:721 pic:3' TACGGGAAAATTGTAACGTGAC 5'& |.|||| |||||||| &5' --GTCCTT------TTGCACTG 3' Ube3b mmu-miR-130b beg:704 end:721 pic:3' TACGGGAAAGTAGTAACGTGAC 5'& |.|||| |||||||| &5' --GTCCTT------TTGCACTG 3' Ube3b mmu-miR-141star beg:1141 end:1156 pic:3' AGGTTGTGACGTGACCTTCTAC 5'& |. |||||||.|| &5' ---------GTTCTGGAAGGTG 3' Ube3b mmu-miR-143 beg:1373 end:1395 pic:3' CTCGATGTCACGAA-GTAGAGT 5'& |||. || ||||||| &5' --GCTGTT-TGATGACATCTCA 3' Ube3b mmu-miR-145star beg:18 end:38 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& |||| ||||||.| &5' -----ACAGAGCCCCCAGGAGT 3' Ube3b mmu-miR-146a beg:1071 end:1090 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& ||.|| ||||||| &5' ---CCGTGCCCT---GTTCTCA 3' Ube3b mmu-miR-146b beg:1069 end:1090 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& .||| .|| ||||||| &5' GGCC-GTGCCCT---GTTCTCA 3' Ube3b mmu-miR-146bstar beg:1001 end:1017 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& .|||| |.|||||| &5' GCCAG---------CTTAGGGC 3' Ube3b mmu-miR-146bstar beg:1304 end:1328 pic:3' TGGT--CTT-GACTCAGGGATCCCG 5'& || | .||| |||||||| &5' -CCTTTGTCTTTGA---CCTAGGGC 3' Ube3b mmu-miR-148a beg:704 end:722 pic:3' TGTTTCAAGACATCACGTGACT 5'& || || |||||||| &5' -----GTCCTTT--TGCACTGA 3' Ube3b mmu-miR-17 beg:667 end:686 pic:3' GATGGACGTGACATTCGTGAAAC 5'& .|||| .| ||.||||| &5' --GCCTGGGC----AGTACTTT- 3' Ube3b mmu-miR-17star beg:100 end:124 pic:3' GATGT-TCACGGGAGTGACGTCA 5'& ||||| ||||||||| |||| &5' CTACACAGTGCCCTCCATGCA-- 3' Ube3b mmu-miR-188-3p beg:1048 end:1069 pic:3' ACGTTTGGGACGTA-CACCCTC 5'& ..| |||||| |||||| &5' ---GGAGCCTGCACAGTGGGA- 3' Ube3b mmu-miR-1892 beg:1036 end:1052 pic:3' TAGGAGGGAGGGCAGGGGTTTA 5'& | ||. |||||||. &5' -------CGCCT-TCCCCAAG- 3' Ube3b mmu-miR-1892 beg:272 end:294 pic:3' TAGGAGGGAGGGCAGGGGTTTA 5'& ||||||.| ||||.|. ||| &5' -TCCTCCTT-CCGTTCTGAAA- 3' Ube3b mmu-miR-1892 beg:454 end:477 pic:3' TAGGAGGGAGGG--CAGGGGTTTA 5'& |||||.|||| ||||.||. &5' --CCTCCTTCCCAAGTCCTCAG-- 3' Ube3b mmu-miR-1893 beg:1202 end:1223 pic:3' GCTCCGCAGGTCGC-GGGCGCGG 5'& || || || |.| ||||.|| &5' -GA-GC--CCTGTGCCCCGTGC- 3' Ube3b mmu-miR-1893 beg:503 end:524 pic:3' GCTCCGCAGGTCG-----CGGGCGCGG 5'& || |||| |||.|.|| &5' ------GT-CAGCCCCTGGCCTGTGC- 3' Ube3b mmu-miR-1894-3p beg:836 end:860 pic:3' GAGGGAAGTGGG-AGAGGGAACG 5'& ||||||| ||| |.|||||| &5' CTCCCTTTCCCCATTTCCCTT-- 3' Ube3b mmu-miR-1898 beg:1302 end:1323 pic:3' CTAGGGGACACTTGGAACTGGA 5'& ||||| || |.||||||| &5' ---CCCCTTTGT-CTTTGACCT 3' Ube3b mmu-miR-18a beg:608 end:632 pic:3' GATAGACGT--GATCTACGTGGAAT 5'& |||||| ||| ||||||| &5' --ATCTGCCCCCTATT--CACCTTA 3' Ube3b mmu-miR-1904 beg:1406 end:1427 pic:3' GGAGGGAGGTC-TCC-TCGTCTTG 5'& | |||| ||| |||||.. &5' -----CGCCAGAAGGAAGCAGGG- 3' Ube3b mmu-miR-1906 beg:929 end:954 pic:3' TCGGGACGG---AGTCCGACGACGT 5'& .|||||| |||||.| .||. &5' --TCCTGCCTCATCAGGTTCTTGT- 3' Ube3b mmu-miR-1906 beg:1359 end:1381 pic:3' TCGGGACGGAGTCCGACGACGT 5'& ||. ||.| .| |||||||. &5' AGTTATGTCATA-GCTGCTGT- 3' Ube3b mmu-miR-1927 beg:1419 end:1430 pic:3' AGTCAGGGATTGTAGGTCTCCAG 5'& |||.|||. &5' ---------------CAGGGGTT 3' Ube3b mmu-miR-1937b beg:721 end:734 pic:3' ACCCCCGAGCAGGCCCTA 5'& ||| | |.|||| &5' ----GGC-C--CTGGGA- 3' Ube3b mmu-miR-1940 beg:748 end:766 pic:3' TTGACGAGGTG-GAAGAGTCAGGAGGTA 5'& ||| | ||||| .||||| &5' --------CACACATCTCA--TCTCCA- 3' Ube3b mmu-miR-1941-5p beg:831 end:859 pic:3' TTC-GGAGACAT-GGTCGTAGAGGGA 5'& ..| |||| || |||.||||| &5' GGGCCCTCCCTTTCCC-CATTTCCCT 3' Ube3b mmu-miR-1953 beg:211 end:233 pic:3' GTCTTCGGACTCT-TGAAAGGGT 5'& ||| .||| || .|||||.. &5' -AGAT-TCTGTGAGGCTTTCTT- 3' Ube3b mmu-miR-1953 beg:828 end:850 pic:3' GTCTTCGGACTCTT----GAAAGGGT 5'& ||||.| ||||||| &5' ------CCTGGGCCCTCCCTTTCCC- 3' Ube3b mmu-miR-1955 beg:781 end:803 pic:3' TTTTCG-ACGTCACGTAGGACCCTGA 5'& || ||| .||||||| &5' ----GCTTGCTCTTTTGTCTGGGAC- 3' Ube3b mmu-miR-1956 beg:591 end:611 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& || .||| ||.||||.| &5' ---GCCTGCTC-GCTCTGGGC- 3' Ube3b mmu-miR-1956 beg:165 end:188 pic:3' AGGCGA-CT-GAGTCGGGACCTGA 5'& |.|. |. || || |||||.| &5' -CTGTGGGGCCTGAGACCTGGGC- 3' Ube3b mmu-miR-1958 beg:215 end:233 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& |||. .|||||.| &5' -----CTGTGAG-GCTTTCTT- 3' Ube3b mmu-miR-1960 beg:704 end:732 pic:3' TCGGGAGAA---GATTGT-CGTGACC 5'& |.|||.|| ||.||| || |||| &5' -GTCCTTTTGCACTGACAGGCCCTGG 3' Ube3b mmu-miR-1961 beg:334 end:344 pic:3' AAGATTGATGATGGAGT 5'& ||.|||| &5' ---------CTGCCTC- 3' Ube3b mmu-miR-1961 beg:923 end:942 pic:3' AAGATT-GATGATGGAGT 5'& || || ||.||||| &5' --CTTGTCTCCTGCCTCA 3' Ube3b mmu-miR-1967 beg:455 end:476 pic:3' CGTAGAAGAGGGGTCCTAGGAGT 5'& || ||.|||| .|||||| &5' ----CTCCTTCCCAA-GTCCTCA 3' Ube3b mmu-miR-1968 beg:1358 end:1378 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& |||. ..|| |.|||||| &5' AGTTA--TGTC----ATAGCTGC- 3' Ube3b mmu-miR-196a beg:66 end:89 pic:3' GGGTTGTT-GTACTTTGATGGAT 5'& |.|||.|. |||||.|| ||| &5' CTCAATAGCCATGAGAC-ACC-- 3' Ube3b mmu-miR-196b beg:636 end:658 pic:3' GGGTTGTTGTC-CTTTGATGGAT 5'& || ||| | || ||||||| &5' -CC-ACAT--GAGACCCTACCTA 3' Ube3b mmu-miR-1982star beg:946 end:964 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& ||. .| |||||||| &5' -CTTGTCT---CCCTCCCA- 3' Ube3b mmu-miR-1982star beg:447 end:469 pic:3' GGAGGG-GTCCT--GGGAGGGTT 5'& || ||| ||.|||||| &5' ----CCACAGCCCTCCTTCCCAA 3' Ube3b mmu-miR-1982star beg:55 end:74 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& ||.|| |||||||.||| &5' ---CCTCA-GACCCTCTCAA 3' Ube3b mmu-miR-1982star beg:361 end:385 pic:3' GGAGGGGTCC--TGGGA-GGGTT 5'& ||.|||||| ||| ||||. &5' -CTTCCCAGGCAACCAAGCCCAG 3' Ube3b mmu-miR-1983 beg:430 end:444 pic:3' TCTTTTGTACGAGGTCCACTC 5'& ||||||||. &5' -----------TCCAGGTGG- 3' Ube3b mmu-miR-199bstar beg:113 end:129 pic:3' CTTGTCCATCAGATTTGTGACCC 5'& || .||||||| &5' ----------TCCATGCACTGGG 3' Ube3b mmu-miR-20a beg:667 end:687 pic:3' GATGGACGTGATATTCGTGAAAT 5'& .|||| .| ||.|||||| &5' --GCCTGGGC----AGTACTTTA 3' Ube3b mmu-miR-210 beg:307 end:329 pic:3' AGTCGG--CGACAGTGTGCGTGTC 5'& ||| || || .|.|||||| &5' ---GCCAAGCC-TC-TATGCACAG 3' Ube3b mmu-miR-2135 beg:1088 end:1106 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& || || ||||.||. &5' --TTTAGCA--AAGATCTT- 3' Ube3b mmu-miR-2135 beg:787 end:806 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& |||.| .| .|||||| &5' -TTTTG--TCTGGGACCTC- 3' Ube3b mmu-miR-2136 beg:748 end:770 pic:3' GTGTAGAGTC-AGTTGTGGGTC 5'& ||||||||| || ||||| &5' CACATCTCATCTCCACACC--- 3' Ube3b mmu-miR-2137 beg:1134 end:1156 pic:3' GAGGGACCCCGAGGGCGGCCG 5'& ||||||||.||. | ||. &5' --CCCTGGGGTTCTGGAAGGT 3' Ube3b mmu-miR-2146 beg:859 end:874 pic:3' GTGTACCTTGGGAAGAGGTG 5'& ||| |.||||||| &5' ------GAA-CTTTCTCCA- 3' Ube3b mmu-miR-214star beg:1218 end:1239 pic:3' CGTGTCGTTCACATCTGTCCGT 5'& ||||||| || |||||.| &5' GCACAGCC--TGC--ACAGGTA 3' Ube3b mmu-miR-218 beg:1485 end:1496 pic:3' TGTACCAATCTAGTTCGTGTT 5'& | |||||| &5' -----------TTGAGCACA- 3' Ube3b mmu-miR-218 beg:1249 end:1269 pic:3' TGTAC-CAATCTAGTTCGTGTT 5'& | |||| |..||||| &5' ----GAGTTACAGCGGGCACA- 3' Ube3b mmu-miR-22star beg:553 end:571 pic:3' ATTTCGAACGGTGACTTCTTGA 5'& |.| || |||.||||| &5' ----GTTC-CC-CTGGAGAAC- 3' Ube3b mmu-miR-23a beg:21 end:42 pic:3' CCTTTAGGGACCGTTACACTA 5'& ||. ||| || |.||||. &5' -GAGCCCCCAGG-AGTGTGG- 3' Ube3b mmu-miR-24 beg:821 end:839 pic:3' GACAAGGACGACTTGACTCGGT 5'& |||| |||.||| &5' ------CTGCGCTCCTGGGCC- 3' Ube3b mmu-miR-24-2star beg:1424 end:1446 pic:3' TGACAAAGTCGAGT-CATCCGTG 5'& ||||. |.|. |||||.| &5' ---GTTTTTGTTTTTGTAGGTA- 3' Ube3b mmu-miR-291a-3p beg:666 end:686 pic:3' CGTGTGTTTCACCT-TCGTGAAA 5'& || |.| |||. ||.||||| &5' GC-CGCC---TGGGCAGTACTTT 3' Ube3b mmu-miR-29bstar beg:989 end:1010 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& ||||. .||.|.||||| &5' ----CCACTCCGTGGAGCCAGC 3' Ube3b mmu-miR-301a beg:700 end:721 pic:3' CGAAACTGTTATGATAACGTGAC 5'& | | .| || |||||||| &5' -----GTCCGTCCTTTTGCACTG 3' Ube3b mmu-miR-301b beg:700 end:721 pic:3' CGAAACTGTTATGGT-AACGTGAC 5'& | | .| || |||||||| &5' -----GTCCGT-CCTTTTGCACTG 3' Ube3b mmu-miR-3072star beg:828 end:850 pic:3' GGA--CGGGAGGGAGCCCCAGGGA 5'& ||| |||||||||. |||| &5' CCTGGGCCCTCCCTT----TCCC- 3' Ube3b mmu-miR-3099star beg:721 end:738 pic:3' GTTCCCGACCTTCCTTCGACC 5'& ||| ||.||||| &5' ----GGCCCT--GGGAGCTG- 3' Ube3b mmu-miR-3099star beg:1138 end:1160 pic:3' GTTCCC--GACCTTCCTTCGACC 5'& .||| |||||||| .||| &5' --GGGGTTCTGGAAGGTGGCT-- 3' Ube3b mmu-miR-30c-2star beg:942 end:964 pic:3' TCTCATTTGTCGGAA-GAGGGTC 5'& .|| |.|| |||||| &5' --GGTTCTT-GTCTCCCTCCCA- 3' Ube3b mmu-miR-30c-2star beg:807 end:820 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& .|||.||||| &5' -----------TCTTTTCCCA- 3' Ube3b mmu-miR-30estar beg:279 end:294 pic:3' CGACATTTGTAGGCT-GACTTTC 5'& |||| |||||| &5' ----------TCCGTTCTGAAA- 3' Ube3b mmu-miR-324-5p beg:81 end:104 pic:3' TGTGGTTA-CGGGATCCCCTACGC 5'& ||||| |.. |||||||| &5' ACACCCAAGGTT---GGGGATGC- 3' Ube3b mmu-miR-326 beg:884 end:902 pic:3' TGACCTCCTTC-CCGGGTCTCC 5'& |||| || |||||||.| &5' ----GAGGCAGAGGCCCAGGG- 3' Ube3b mmu-miR-326 beg:577 end:595 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& |||||| ||||||| &5' -CTGGAGTA----CCCAGAG- 3' Ube3b mmu-miR-330 beg:883 end:902 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& .|.||.|| ||||||||.| &5' --TTGAGGCAGAGGCCCAGGG- 3' Ube3b mmu-miR-331-5p beg:636 end:658 pic:3' CCTAGGG--ACCCTGGTATGGATC 5'& || || |||| |||||| &5' ----CCACATGAGACCCTACCTA- 3' Ube3b mmu-miR-335-3p beg:125 end:148 pic:3' CCAGTC-CTCGTTATTACTTTTT 5'& || ||| |.|| |.||||||| &5' GGACAGAGGGC--TGATGAAAA- 3' Ube3b mmu-miR-335-5p beg:1424 end:1440 pic:3' TGTAAAAAGCAATAACGAGAACT 5'& ||| |||.|.||| &5' ---------GTTTTTGTTTTTG- 3' Ube3b mmu-miR-342-5p beg:815 end:834 pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& |||| ||.|.||| &5' ------CACACACTGCGCTCCT 3' Ube3b mmu-miR-3474 beg:676 end:693 pic:3' CTTAGGTGCA-GAGG-AGGGTCCC 5'& || ||.. |.|||||| &5' --------GTACTTTATTCCAGGG 3' Ube3b mmu-miR-3474 beg:348 end:373 pic:3' CTTAGGTG-CA---GAGGAGGGTCCC 5'& .||||| || |||.||||||| &5' --GTCCACAGTGGCCTCTTCCCAGG- 3' Ube3b mmu-miR-3475 beg:859 end:876 pic:3' AAGTTTGGTACACGGAGGTCT 5'& .|||. .||||||| &5' ---GAACTT----TCTCCAGA 3' Ube3b mmu-miR-34cstar beg:178 end:197 pic:3' GGACCGACACACCAATCACTAA 5'& ||||| | |||||||| &5' CCTGG------GCCTAGTGATT 3' Ube3b mmu-miR-351 beg:474 end:496 pic:3' GTCCGAGTTTCCCGAGGAGTCCCT 5'& ||||| || || . ||||||| &5' CAGGC-CAC---GC-TGTCAGGGA 3' Ube3b mmu-miR-361 beg:202 end:221 pic:3' CATGGGGACCTCTAAGACTATT 5'& ||.||||||||||||| &5' --ACTCCTGGAGATTCTG---- 3' Ube3b mmu-miR-370 beg:454 end:482 pic:3' TGGTCCAAGGT----GGGGTCGTCCG 5'& || |||| ||.|||||||| &5' -CCTCCTTCCCAAGTCCTCAGCAGGC 3' Ube3b mmu-miR-378star beg:1456 end:1470 pic:3' TGTGTCCTGGACCTCAGTCCTC 5'& |||.| ||||||. &5' ------GACTT---GTCAGGG- 3' Ube3b mmu-miR-432 beg:673 end:693 pic:3' GACGG-GTGACTAGATGAGGTTCT 5'& || .||| .||.||||.| &5' --GCAGTACT---TTATTCCAGG- 3' Ube3b mmu-miR-450a-3p beg:1037 end:1051 pic:3' TACTTACGTTTCGT-AGGGGTTA 5'& || ||||||| &5' -----------GCCTTCCCCAA- 3' Ube3b mmu-miR-450b-3p beg:1177 end:1195 pic:3' TACGTACGTTTTACAAGGGTTA 5'& ||||. .||||||||. &5' ---CATGT---GTGTTCCCAG- 3' Ube3b mmu-miR-450b-3p beg:354 end:371 pic:3' TACGTACGTTTTACAAGGGTTA 5'& | . ||||||. &5' ------GTGGCCTCTTCCCAG- 3' Ube3b mmu-miR-450b-3p beg:452 end:469 pic:3' TACGTACGTTTTACAAGGGTTA 5'& || ||||||| &5' ------GCCCTCC-TTCCCAA- 3' Ube3b mmu-miR-463 beg:1316 end:1336 pic:3' GATGGAATATACC-ACAGATAGT 5'& |||| || |||||.|| &5' --ACCTAG---GGCTGTCTGTC- 3' Ube3b mmu-miR-466f-5p beg:1216 end:1239 pic:3' GTACGTGTACGTGTGTGTGCAT 5'& |.|||||| || ..|||| ||| &5' CGTGCACA-GCCTGCACAGGTA 3' Ube3b mmu-miR-470 beg:1037 end:1054 pic:3' TGAGTGGTCACGGTCA-GGTTCTT 5'& ||| |||||.| &5' ----------GCCTTCCCCAAGGA 3' Ube3b mmu-miR-484 beg:1231 end:1252 pic:3' TAGCCCTCCCCTGA--CTCGGACT 5'& ||| || |||||||| &5' ------AGGTAACACAGAGCCTGA 3' Ube3b mmu-miR-488star beg:782 end:801 pic:3' AACTCTCACGAT--AATAGACCC 5'& |||| ||.|||||| &5' -------TGCTCTTTTGTCTGGG 3' Ube3b mmu-miR-497 beg:1365 end:1382 pic:3' ATGTTTGGTGTCACACGACGAC 5'& .||.|| |||||.| &5' ------TCATAGC-TGCTGTT- 3' Ube3b mmu-miR-541 beg:319 end:339 pic:3' TCACACTGGTTGTAGTCTTAGGGAA 5'& || ||.|| |.||||| &5' ----TGCACAGCAA---AGTCCCT- 3' Ube3b mmu-miR-542-5p beg:961 end:970 pic:3' AGCACTGTACTACTAGGGGCTC 5'& |||.|| &5' ---------------CCCTGA- 3' Ube3b mmu-miR-665 beg:1386 end:1407 pic:3' TCCCTGGAGTCG--GAGGACCA 5'& |.|||||| |||||||| &5' ----ATCTCAGCAGCTCCTGGT 3' Ube3b mmu-miR-665 beg:814 end:836 pic:3' TCCCTGGAGT----CG-GAGGACCA 5'& || || || ||||||| &5' -----CCACACACTGCGCTCCTGG- 3' Ube3b mmu-miR-665 beg:190 end:213 pic:3' TCCCTGGAGTCG----GAGGACCA 5'& ||. ||| ||||||| &5' ---GATTACAGAGCAACTCCTGG- 3' Ube3b mmu-miR-666-5p beg:587 end:605 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& || ||| |||.|||| &5' ------CAGAGCC-TGCTCGCT 3' Ube3b mmu-miR-666-5p beg:1184 end:1204 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& |.|| | ||||| ||||||| &5' -GTTC-C-CAGCT-TGCCCGC- 3' Ube3b mmu-miR-666-5p beg:250 end:271 pic:3' CCGAGAGTG--TC-GACACGGGCGA 5'& ||| .| |||||||.|. &5' ------CACAAGGCCTGTGCCTGT- 3' Ube3b mmu-miR-670 beg:477 end:496 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& .|||| .| ||||||| &5' ---GCCAC--GCTGTCAGGGA- 3' Ube3b mmu-miR-670 beg:674 end:696 pic:3' AAGTGGTGTATGTGA-GTCCCTA 5'& || .|| .|.| |||||| &5' --CAGTACTT-TATTCCAGGGA- 3' Ube3b mmu-miR-671-5p beg:379 end:403 pic:3' GAGGTCGGGGA-GGTCCCGAAGGA 5'& |||||.||| |||||| || &5' --CCAGCTCCTGCCAGGGAGGCC- 3' Ube3b mmu-miR-672 beg:650 end:670 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& .|| .|||||.| |||.|| &5' -TACCTACAGTGC-CCAGCC--- 3' Ube3b mmu-miR-673-3p beg:711 end:733 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& ||||| .|| .||||.||. &5' --TGCACT-GACA-GGCCCTGGG 3' Ube3b mmu-miR-674 beg:335 end:360 pic:3' ATGT-GGTGAGGGTAGA-GTCACG 5'& |.| |.|| ||..|| ||||| &5' TGCCTCTAC-CCTGTCCACAGTG- 3' Ube3b mmu-miR-679 beg:394 end:416 pic:3' TGGTTCTCA-GTGGA--GTGTCAGG 5'& ..||| |||. ||||||| &5' ---GGGAGGCCACTGAGCACAGTC- 3' Ube3b mmu-miR-681 beg:381 end:402 pic:3' TCGACGGACGGTCGCTCCGAC 5'& |||| |||||||| ||||| &5' AGCT-CCTGCCAGGGAGGC-- 3' Ube3b mmu-miR-686 beg:1406 end:1425 pic:3' AGAAGTGGCAGACCCTTCGTTA 5'& |.|| |||||||. &5' ----CGCCAGAA-GGAAGCAG- 3' Ube3b mmu-miR-688 beg:253 end:273 pic:3' CTTATTCATCA-GCGGACGCT 5'& ||| .|||||.|| &5' ----AAGGCCTGTGCCTGTGA 3' Ube3b mmu-miR-688 beg:513 end:523 pic:3' CTTATTCATCAGCGGACGCT 5'& |||||.| &5' ------------GCCTGTG- 3' Ube3b mmu-miR-696 beg:47 end:66 pic:3' GGGTGTCGTTCGTGTGCG 5'& |||||||| || || &5' CCCACAGCCCTCAGAC-- 3' Ube3b mmu-miR-696 beg:813 end:832 pic:3' GGGTGTCGTT-CGTGTGCG 5'& |||||| || ||.| | &5' CCCACA-CACTGCGCTC-- 3' Ube3b mmu-miR-696 beg:321 end:341 pic:3' GGGTGTCG-TTCGTGTGCG 5'& |||||| ||| | .|| &5' --CACAGCAAAGTCCCTGC 3' Ube3b mmu-miR-696 beg:468 end:487 pic:3' GGGTGTCGTTCGTGTGCG 5'& || |||||.|| ||||| &5' -CCTCAGCAGGC-CACGC 3' Ube3b mmu-miR-703 beg:1425 end:1445 pic:3' AAGAAAGGAAGACTTCCAAAA 5'& |.||| .||.|| |||| &5' -TTTTTGTTTTTGTAGGT--- 3' Ube3b mmu-miR-704 beg:725 end:748 pic:3' GATCCTCGTCTCGTGTACAGA 5'& ||.||||| ||| |.| ||| &5' CTGGGAGCTGAGGATACGTC- 3' Ube3b mmu-miR-709 beg:826 end:849 pic:3' AGGAGGAC---GGAGACGGAGG 5'& |||||| |||| ..||| &5' --CTCCTGGGCCCTCCCTTTCC 3' Ube3b mmu-miR-710 beg:1444 end:1465 pic:3' GAGTTGAGAGG--GGTTCTGAACC 5'& ||||| |.|||||||| &5' ---AACTCGTGGACTAAGACTTG- 3' Ube3b mmu-miR-713 beg:513 end:532 pic:3' CGACACACGGAAGTCACGT 5'& || ||||| ||||||. &5' GCC-TGTGCA-TCAGTGT- 3' Ube3b mmu-miR-721 beg:701 end:721 pic:3' AAGG-GGGAAAATTAACGTGAC 5'& ||| .|||| |||||||| &5' -TCCGTCCTT----TTGCACTG 3' Ube3b mmu-miR-744 beg:499 end:525 pic:3' ACGACAATC-GGGATCGGG-GCGT 5'& |||||| || ||||.|||. .||| &5' TGCTGTCAGCCCCTGGCCTGTGCA 3' Ube3b mmu-miR-744 beg:1068 end:1085 pic:3' ACGACAATCGGGATCGGGGCGT 5'& |.||| | ||||.|. &5' ------TGGCCGT-GCCCTGT- 3' Ube3b mmu-miR-760 beg:8 end:29 pic:3' AGGGGTGTCTGG-GTCTCGGC 5'& .|.|.| ||| ||||||| &5' -TCTCGCT-ACCACAGAGCC- 3' Ube3b mmu-miR-760 beg:574 end:597 pic:3' AGGGGTGTC-TGGGTCTCGGC 5'& | |.. || |||||||||| &5' TTTCTGGAGTACCCAGAGCC- 3' Ube3b mmu-miR-760 beg:888 end:906 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& || ||.|||||.||. &5' ----CAGAGGCCCAGGGCT- 3' Ube3b mmu-miR-764-3p beg:346 end:367 pic:3' TGTCAAC-GGTGATACCGGAGGA 5'& || |||| .|||||||.| &5' -----TGTCCACAGTGGCCTCTT 3' Ube3b mmu-miR-764-5p beg:392 end:412 pic:3' TCCTCCTGTACACTCGTGG 5'& .||||| || ||||||| &5' GGGAGGCCAC-TGAGCAC- 3' Ube3b mmu-miR-764-5p beg:1486 end:1496 pic:3' TCCTCCTGTACACTCGTGG 5'& ||||||| &5' -----------TGAGCAC- 3' Ube3b mmu-miR-872 beg:895 end:915 pic:3' GGACTTGATTGTTCATTGGAA 5'& || |..|| |||||||| &5' CCAGGGCTT---AGTAACCT- 3' Ube3b mmu-miR-874 beg:26 end:50 pic:3' AGCCAGGGA----GC-CCGGTCCCGTC 5'& ||| .| ||||||||.| &5' -----CCCAGGAGTGTGGCCAGGGTA- 3' Ube3b mmu-miR-876-3p beg:911 end:928 pic:3' ACTTAATGAAACATTTGGTGAT 5'& |.|| || |.||||| &5' -----TGCTA-GT-AGCCACT- 3' Ube3b mmu-miR-876-5p beg:186 end:210 pic:3' ATCACTAAGTGTCTC-TTTAGGT 5'& |||||| |.|||||| || ||| &5' TAGTGA-TTACAGAGCAACTCC- 3' Ube3b mmu-miR-877star beg:242 end:252 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& ||.|||||| &5' ------------GAGGAGGAC- 3' Ube3b mmu-miR-877star beg:123 end:139 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& .|||| |||||.| &5' -------GGGGAC-AGAGGGC- 3' Ube3b mmu-miR-879 beg:1005 end:1027 pic:3' CCGAATCTCGATATTCG-GAGA 5'& ||||||.|||| ||| ||| &5' -GCTTAGGGCTAC-AGCGCTC- 3' Ube3b mmu-miR-880 beg:1100 end:1124 pic:3' AGATGAGTC---TCTCCTACCTCAT 5'& || | .||| ||||.||| &5' ----CTTGGGCTGGAGCATGGGGTA 3' Ube3b mmu-miR-881 beg:90 end:112 pic:3' AGATAAGTCTTTTC-TGTGTCAA 5'& .|| .|.| ||||||| &5' ---GTTGGGGATGCTACACAGT- 3' Ube3b mmu-miR-881 beg:1047 end:1065 pic:3' AGATAAGTCTTTTC-TGTGTCAA 5'& ||.|. .|||||| &5' -------AGGAGCCTGCACAGT- 3' Ube3b mmu-miR-882 beg:410 end:428 pic:3' TGATTACGCGATTGAGAGAGGA 5'& |. | . |||||||| &5' ------GT-CAGGGTCTCTCCT 3' Ube3b mmu-miR-883a-3p beg:1348 end:1366 pic:3' TATGACTCTCGACAA--CGTCAAT 5'& ||| ||||||| &5' ---------GCTTCCCGGCAGTTA 3' Ube3b mmu-miR-883a-5p beg:1378 end:1398 pic:3' CATTGACGA-TGAAGAGAGTCGT 5'& .|| || |||||||| &5' ----TTGATGACA--TCTCAGCA 3' Ube3b mmu-miR-883a-5p beg:467 end:479 pic:3' CATTGACGATGAAGAGAGTCGT 5'& || ||||||| &5' ------------TC-CTCAGCA 3' Ube3b mmu-miR-93star beg:1382 end:1399 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& || |||||||| &5' -------TGACATCTCAGCAG- 3' Ube3b mmu-miR-93star beg:466 end:480 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& |. |||||||| &5' --------GTC--CTCAGCAG- 3' Ube3b mmu-miR-98 beg:325 end:344 pic:3' TTGTTATGTTGAAT-GATGGAGT 5'& .||| ||.|||| &5' ------GCAAAGTCCCTGCCTC- 3' Ube3b mmu-miR-98 beg:919 end:942 pic:3' TTGTTATGTTGAAT----GATGGAGT 5'& .| ||||. ||.||||| &5' ------GCCACTTGTCTCCTGCCTCA 3' Ube3b mmu-miR-1944 beg:1219 end:1247 pic:3' TTAGTCTTGAAC-TGTAAGTCGTGTCTC 5'& || |.| || ||| .| ||||||| &5' ---CACAGCCTGCACAGGTAACACAGAG 3' Ube3b mmu-miR-760 beg:1225 end:1249 pic:3' AGGGGTGTCTG--G-GTCTCGGC 5'& |. |||||. | ||||||| &5' -CTGCACAGGTAACACAGAGCC- 3' Ube3b mmu-miR-760 beg:651 end:673 pic:3' AGGGGTGTC-TGGGTCT-CGGC 5'& ||.|||| .||||| ||| &5' --CCTACAGTGCCCAGCCGCC- 3' Ube3b mmu-miR-34b-3p beg:180 end:197 pic:3' CTACCGTCACCTCAATCACTAA 5'& |||. |||||||| &5' --------TGGGCCTAGTGATT 3' Ube3b mmu-miR-184 beg:695 end:711 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& |||| ||||||| &5' -------TCAGAG-TCCGTCC- 3' Ube3b mcmv-miR-m88-1star beg:1322 end:1341 pic:3' GGCTACAGTCCCC-----CAGCCAGTA 5'& |||| |||||||| &5' --------AGGGCTGTCTGTCGGTCA- 3' Ube3b mmu-miR-3473 beg:409 end:427 pic:3' CCGACTCGGT---AGAGAGGT 5'& ||.|| ||||||| &5' -----AGTCAGGGTCTCTCC- 3' Ube3b mmu-miR-185 beg:411 end:427 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& |||||. ||||||| &5' TCAGGG--------TCTCTCC- 3' Ube3b mmu-miR-152 beg:103 end:128 pic:3' GGT-TCAAGACA-GTACGTGACT 5'& || ||| |||||||||. &5' -CACAGTGCCCTCCATGCACTGG 3' Ube3b mmu-miR-130a beg:107 end:127 pic:3' TACGGGAAAATTGTAACGTGAC 5'& .|||||| || ||||||| &5' GTGCCCTC----CA-TGCACTG 3' Ube3b mmu-miR-130b beg:107 end:127 pic:3' TACGGGAAAGTAGTAACGTGAC 5'& .|||||| || ||||||| &5' GTGCCCTC----CA-TGCACTG 3' Ube3b mmu-miR-721 beg:111 end:127 pic:3' AAGGGGGAAAATTAACGTGAC 5'& |||.| ||||||| &5' --CCCTCCA-----TGCACTG 3' Ube3b mmu-miR-301a beg:99 end:127 pic:3' CGAAACTGTTATGATA---ACGTGAC 5'& ||| |||.|.| ||||||| &5' GCTAC-ACAGTGCCCTCCATGCACTG 3' Ube3b mmu-miR-301b beg:99 end:127 pic:3' CGAAACTGTTATGGTA---ACGTGAC 5'& ||| |||.|.|| ||||||| &5' GCTAC-ACAGTGCCCTCCATGCACTG 3' Ube3b mmu-miR-148b beg:696 end:722 pic:3' TGTTTCAAGACACT--ACGTGACT 5'& ||.||| | |||||||| &5' -CAGAGTCCGTCCTTTTGCACTGA 3' Ube3b mmu-miR-152 beg:696 end:722 pic:3' GGTTCAAGACAGT---ACGTGACT 5'& ||. || ||| |||||||| &5' -CAGAGTCCGTCCTTTTGCACTGA 3' Ube3b mmu-miR-148b beg:102 end:128 pic:3' TGTTTCAAGACAC-TACGTGACT 5'& ||| ||| ||||||||. &5' ACACAGTGCCCTCCATGCACTGG 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Ube3b mmu-let-7a 293 321 -UGA---UAUGUUGGA-UGA--UGGAGU ||| :|||::||| :| :|||| AACUCAGGUACGGCCUCGCCAAGCCUCU Ube3b mmu-let-7b 762 791 UUGGUGUGUUGGA--------UGAUGGAGU |||||| :||| :|| ||| -UCCACACCGCCUCUGUUGGCGCUUGCUCU Ube3b mmu-let-7c 292 321 -UUGG---UAUGUUGGA-UGA--UGGAGU |||: :|||::||| :| :|||| AAACUCAGGUACGGCCUCGCCAAGCCUCU Ube3b mmu-let-7d 318 346 UGAUACGU--UGGAU----GAUGGAGA- ||||||| :| ||:||||| UCUAUGCACAGCAAAGUCCCUGCCUCUA Ube3b mmu-let-7e 914 943 -UGAUA-----UGUU-GGAGGAUGGAGU- :||| || :|||||:||||| UGCUAGUAGCCACUUGUCUCCUGCCUCAU Ube3b mmu-let-7f 914 943 -UGAUA--UGU----UAGAUGAUGGAGU- :||| :| :||| ||:||||| UGCUAGUAGCCACUUGUCUCCUGCCUCAU Ube3b mmu-miR-101a 1359 1382 GAAGUCA--AUAGUGUC-AUGACAU |||| |:|||:|| |:|||| --GCAGUUAUGUCAUAGCUGCUGUU Ube3b mmu-miR-106a 766 787 AUGGACGU-GACAAUCGUGAAAC ||| || |||||:||:||| CACC-GCCUCUGUUGGCGCUUG- Ube3b mmu-miR-106b 769 787 UAGACGU-GACAGUCGUGAAAU || ||||::||:||| ---CGCCUCUGUUGGCGCUUG- Ube3b mmu-miR-10b 407 435 -UGUGUUUAAGCCAA----GAUGUCCC- :||||: ||| |||:|||| AGCACAGUCAGGGUCUCUCCUAUAGGGA Ube3b mmu-miR-125a 408 436 -GUGUCCAAUUUCCCAGAG------UCCCU- ||||| |||||||| ||||| GCACAGUC---AGGGUCUCUCCUAUAGGGAU Ube3b mmu-miR-125b 408 436 AGUGUUCAAUCCCAGAG------UCCCU- ||| ||| |||||||| ||||| GCAC-AGUCAGGGUCUCUCCUAUAGGGAU Ube3b mmu-miR-126-3p 293 307 CGUAAUAAUGAGUGCCAUGCU- ||||| ||||||: -------AACUCA-GGUACGGC Ube3b mmu-miR-128a 246 274 -UUUUCU-----CUGGCCAAGUGACACU- ::|:|| |:|| || | |||||| AGGAGGACACAAGGCCUGUGC-CUGUGAG Ube3b mmu-miR-128b 246 274 -CUUUCU-----CUGGCCAAGUGACACU- |:|:|| |:|| || | |||||| AGGAGGACACAAGGCCUGUGC-CUGUGAG Ube3b mmu-miR-129-3p 118 141 -UACGAAAAACCCCA--UUCCCGAA |||| ||||| :|||||| CAUGCAC--UGGGGACAGAGGGCUG Ube3b mmu-miR-130b 109 128 -UACGGGAAAGUAGUAACGUGAC- :|||||| || ||||||| AGUGCCCUC----CA-UGCACUGG Ube3b mmu-miR-134 1304 1343 -GGGGAGACC--AGUUGG--------------UCAGUGU |||||:|| |::||| :||||| ACCCCUUUGUCUUUGACCUAGGGCUGUCUGUCGGUCACC Ube3b mmu-miR-140 388 408 -GAUGGUAUCCCAUUUUGGUGAC- ||:|| |||| |::|||||| CCUGCC--AGGG--AGGCCACUGA Ube3b mmu-miR-140* 152 173 AGGCACCAAGAUGGGACACCAU || |||||:|||||||| CCCCCAGUUCUGCCCUGUGGG- Ube3b mmu-miR-142-3p 76 109 -GGUAUU---------UCAUCCUUUGUGAUGU- ||||:| :|| ||::|::||||| GCCAUGAGACACCCAAGGUUGGGGAUGCUACAC Ube3b mmu-miR-148a 1201 1226 -UGUUUCAAGACAU----CACGUGACU :||:|| ||||: |||||| CGCAGAGCCCUGUGCCCCGUGCACA-- Ube3b mmu-miR-148b 1201 1226 -UGUUUCAAGACAC----UACGUGACU :||:|| ||||| :||||| CGCAGAGCCCUGUGCCCCGUGCACA-- Ube3b mmu-miR-149 1105 1133 -CCUCACUUCUGUGCCUC-----GGUCU- ||: ||:|| ||:||:| ||||: UGGGCUGGAG-CAUGGGGUAGGCCCAGGA Ube3b mmu-miR-152 687 723 -GGGUUCA---------AGACAGU---ACGUGACU- :|||:| || ||| |||||||| UUCCAGGGACUUCAGAGUCCGUCCUUUUGCACUGAC Ube3b mmu-miR-15a 1357 1381 GUGUUUGGUAAUACA----CGACGAU- ::| :|||||| ||||||: ---CGGCAGUUAUGUCAUAGCUGCUGU Ube3b mmu-miR-16 1356 1381 -GCGGUUAUAAAUGCA----CGACGAU- || ||:| ||:|| ||||||: CCGGCAGU---UAUGUCAUAGCUGCUGU Ube3b mmu-miR-17-3p 103 131 -AUGU-UCACGGGAG-----UGACGUCA |||| ||||||||| |||| :| CUACACAGUGCCCUCCAUGCACUGGGGA Ube3b mmu-miR-182 1181 1202 -ACACUCAAGAUGGU--AACGGUUU |||| |||| ||| ||||| AUGUGUGUUC--CCAGCUUGCCC-- Ube3b mmu-miR-183 95 116 GUCACUUAAGAUG-GUCACGGUAU :| |:|| |||| ||||||| UGG-GGAUGCUACACAGUGCCC-- Ube3b mmu-miR-184 936 963 UGGGAAUAGUCA------AGAGGCAGGU ||| ||||| ||||| ||| -GCCUCAUCAGGUUCUUGUCUCCCUCCC Ube3b mmu-miR-187 723 747 GGCCGA---CGUUGUGUUCUGUGCU ||| | |:| |:||:||| -AGGCCCUGGGAGCUGAGGAUACGU Ube3b mmu-miR-188 111 132 -UGGGAGGUGGUACGU--UCCCUAC :||||||| |||| :|||| UGCCCUCCA---UGCACUGGGGAC- Ube3b mmu-miR-193 168 194 GACCCUGAAAC----AUCCGG-UCAA ||||:| |:|||| ||| GUGGGGCCUGAGACCUGGGCCUAGUG Ube3b mmu-miR-196a 636 659 GGUUGUUGUACUUUG--AUGGAU- ||| ||||||:|| |||||| -GAACCACAUGAGACCCUACCUAC Ube3b mmu-miR-201 97 130 -UCU------UGUUACGGAA------UGACUCAU :|| |||:|||| ||||:| GGGAUGCUACACAGUGCCCUCCAUGCACUGGGG- Ube3b mmu-miR-205 1392 1421 -GUC--UGAGG-CCACCUUA--CUUCCU- ||| :|||| ||||| |||||| UCAGCAGCUCCUGGUGGCGCCAGAAGGAA Ube3b mmu-miR-207 1261 1290 CUCCC-----UCCUCUCGGUCCUC-UUCG- ||| :||||||::|| | |||| -CGGGCACACGGGAGAGUUAGUUGUAAGCA Ube3b mmu-miR-211 120 139 UCCGUUUCCUACUGUUUCCCUU ||| ||: ||||:|||| -UGCACUGGG-GACAGAGGGC- Ube3b mmu-miR-214 1326 1355 -GACGGACAGACA--------CGGACGACA |||:||||| || |:||||| GCUGUCUGUCGGUCACCUAGAGUCUGCUU- Ube3b mmu-miR-215 1328 1351 -CAGACAGUUUAGU--AUC-CAGUA |||||||: :||| ||| ||| UGUCUGUCG-GUCACCUAGAGUCU- Ube3b mmu-miR-22 1142 1168 UGUCAAGAAG-UUGACCG---UCGAA- :||||| |: |||| ||||| -GGGUUCUGGAAGGUGGCUCCAGCUUC Ube3b mmu-miR-221 1354 1377 UUUGGGUCGUCUGUUACA---UCGA- |||:|||| |||| |||| --UCCCGGCAGUU-AUGUCAUAGCUG Ube3b mmu-miR-222 1122 1161 CUCUGGGUCA--UCGG-----------UCUA-CAUCGA- ||:||||| |||| :|| ||:||| UAGGCCCAGGAAAGCCCCUGGGGUUCUGGAAGGUGGCUC Ube3b mmu-miR-24 165 190 -GACAA---GGACGACUUGACUCGGU |||| |||| || |||:||| CCUGUGGGGCCUGA-GACCUGGGCCU Ube3b mmu-miR-28 254 280 GAGUUAU-----CUGACACUCGAGGAA ||| | |||||||||||| -ACAAGGCCUGUGCCUGUGAGCUCCUC Ube3b mmu-miR-292-3p 1386 1413 -UGU-GAGUUUU---GGACCGCCGUGAA ||| ||||: |||||:|||:| GACAUCUCAGCAGCUCCUGGUGGCGCC- Ube3b mmu-miR-295 900 930 -UCUGAGUUUU----C-AUCAUC-GUGAAA :|:||:|: | |||||| ||||| AGGGCUUAGUAACCUGCUAGUAGCCACUUG Ube3b mmu-miR-296 877 901 UGUCCUA--ACUCCCCC-CCGGGA |||||| ||||| | ||||| UCAGGAUGUUGAGGCAGAGGCCCA Ube3b mmu-miR-298 563 584 CCUUCUUGUCGGGAGGAGACGG |:|||||||||| ::|||| UGGAGAACAGCCCAUUUCUGG- Ube3b mmu-miR-301 93 128 CGAAACUGUUAUGAUA-------------ACGUGAC- |||: :||:||| ||||||| --GUUGGGGAUGCUACACAGUGCCCUCCAUGCACUGG Ube3b mmu-miR-301b 100 128 -ACGAAACUGUUAUGGUA---ACGUGAC- |||| |||:|:|| ||||||| AUGCUAC-ACAGUGCCCUCCAUGCACUGG Ube3b mmu-miR-30e* 266 295 -GACAUUUGU------AGGCU-GACUUUC ||||:|:| |||| |||||| CCUGUGAGCUCCUCCUUCCGUUCUGAAAA Ube3b mmu-miR-31 313 344 GUCG---AUACG-GUCGU---AGA-ACGGA- ||| ||||| ||||| || ||||| AAGCCUCUAUGCACAGCAAAGUCCCUGCCUC Ube3b mmu-miR-320 357 389 AAGCGGGAGAG------------UUGGGUCGAAAA :| |||||: |:||||||| -GUGGCCUCUUCCCAGGCAACCAAGCCCAGCUC-- Ube3b mmu-miR-324-3p 1126 1159 -GGUCG--UCGUGGACCCCG-------UCACC- |||| ||| |||||||: :|||| CCCAGGAAAGCCCCUGGGGUUCUGGAAGGUGGC Ube3b mmu-miR-324-5p 522 545 -GUGGUUACGGGAUC---CCCUACGC ||:||:||:||||| |||| GCAUCAGUGUCCUAGCUUGGGAA--- Ube3b mmu-miR-326 1107 1133 -UGACCUC---CUUC--CCGGGUCUCC :|||||| | | |||||||: GGCUGGAGCAUGGGGUAGGCCCAGGA- Ube3b mmu-miR-328 879 907 UGCCUU---C-CCGUCUC----UCCCGGUC ||| | ||||||| |||||: -AGGAUGUUGAGGCAGAGGCCCAGGGCUU- Ube3b mmu-miR-33 98 115 GUUACGUUGAUGUUACGUG :|||| || |||:||| GGAUGCUAC-ACAGUGCC- Ube3b mmu-miR-331 1116 1147 AAGAUCCUAUCCGGGU-----------CCCCG- |:||:|||||||| ||||: --AUGGGGUAGGCCCAGGAAAGCCCCUGGGGUU Ube3b mmu-miR-337 722 741 UUUCCGUAGUAUAUCCUCGACUU- |||| |:||||||||: -CAGGCCC----UGGGAGCUGAGG Ube3b mmu-miR-338 1091 1115 -AGUUG-UUUUAGUGACUACGACCU- |:|:| ||:||| :||: |||||| UUUAGCAAAGAUC-UUGG-GCUGGAG Ube3b mmu-miR-339 1394 1429 AC-UCGAGGACCUCC------------UGUCCCU- | ||||||||| || :|||||: AGCAGCUCCUGGUGGCGCCAGAAGGAAGCAGGGGU Ube3b mmu-miR-345 1107 1128 CGUGACCUGAU-CCCCAGUCGU :||||| ||||| :|| -GGCUGGAGCAUGGGGUAGGCC Ube3b mmu-miR-346 1250 1277 -UCUC-----CGUCCGUGAGCCCGUCUGU |||| ||:||||| |||| ||| GAGAGUUACAGCGGGCACACGGG-AGAG- Ube3b mmu-miR-34a 1155 1179 -UUGUUGGUCGAUUCUGU-GACGGU- ::| |||||| ||: |||||| UGGCU-CCAGCUUC-ACGUCUGCCAA Ube3b mmu-miR-34c 472 492 CGUUAGUCGAUUGAUGUGACGGA ||||| ::| ||:|||:| ---CUCAGCAGGCCACGCUGUCA Ube3b mmu-miR-351 368 400 -GUCCGA--GUUUCC--CGAGGA--GUCCCU- ||||| |||: |||||| |||||| CCAGGCAACCAAGCCCAGCUCCUGCCAGGGAG Ube3b mmu-miR-361 204 225 CAUGGGGACCUCUAAGACUAUU- ||:||||||||||||| |:| -AACUCCUGGAGAUUCUG-UGAG Ube3b mmu-miR-362 668 697 AAGUGUGGAUCC----------AAGGUUCCUAA |:|||:|| |||||:||| ---CCGCCUGGGCAGUACUUUAUUCCAGGGAC- Ube3b mmu-miR-363 1059 1081 AAUGUCUACCUA----UGGCACGUUA |||| |||: :|||||| -CACAG-UGGGAAGUGGCCGUGCC-- Ube3b mmu-miR-370 435 483 UUGGUCCA--AGG--------UGGG---------------GUCGUCCG |||||| ||| :||| |||||||| -UCCAGGUGGUCCACACCACAGCCCUCCUUCCCAAGUCCUCAGCAGGCC Ube3b mmu-miR-379 1137 1179 -GGAUGCA--------------AGGUAU-----CAGAUGGU |||: | |||| ||||:||| CCCUGGGGUUCUGGAAGGUGGCUCCAGCUUCACGUCUGCCAA Ube3b mmu-miR-380-5p 1323 1344 -CGCGUACAAGAUA-CCAGUUGGU | || || |||:| |||| ||| AGGGC-UG-UCUGUCGGUC-ACCU Ube3b mmu-miR-411 1055 1080 UGAC---UC-CCAAUCACCUGGCACAA ||| || || ||||| ||||| CCUGCACAGUGGGAAGUGG-CCGUGC- Ube3b mmu-miR-422b 358 387 -CCGGA--AGA--CUGA-GGUUCAGGUC- ||||| || |:| ||||| |||| UGGCCUCUUCCCAGGCAACCAAGCCCAGC Ube3b mmu-miR-423 165 189 -GACUCCCCGGAGUCUGG-CUCGA ||| ||||||| ||||| |:|| CCUGUGGGGCCUGAGACCUGGGCC Ube3b mmu-miR-424 1355 1381 AGGUUUU--GUACUUAA-CGACGAC- ||:: :||| ||||||| CCCGGCAGUUAUGUCAUAGCUGCUGU Ube3b mmu-miR-425 438 468 -CCGCC---UGUGCUGU-------AAGGGCUA ||:|| |||| ||| ||||| AGGUGGUCCACACCACAGCCCUCCUUCCCA-- Ube3b mmu-miR-449b 1190 1231 -GGUCGAU----CGU--------------UACGUGACGGA |||||| ||| :||||| |||| CCCAGCUUGCCCGCAGAGCCCUGUGCCCCGUGCACAGCCUG Ube3b mmu-miR-450b* 1179 1196 UACGUACGUUUUACAAGGGUUA ||||: :||||||||: --CCAUGU---GUGUUCCCAGC Ube3b mmu-miR-455-5p 880 902 GCUACA--UCAGGUUUCCGUGUAU ||||| || ||:|||| || GGAUGUUGAGG-CAGAGGCCCAG- Ube3b mmu-miR-465-3p 388 409 AGAUGAAUCUUUCCGG-GACUAG ||:| ||::||||| |||| CCUGCC-AGGGAGGCCACUGAG- Ube3b mmu-miR-469 1123 1160 CCUGUGGUUCU-------------AGUUACUUUCUCCGU |:| |||:|| || |||:| ||| AGGC-CCAGGAAAGCCCCUGGGGUUCUG-GAAGGUGGCU Ube3b mmu-miR-470 103 132 AGUG-GUCACGGUCAGGU-------UCUU- :|| ||||||| |||| :|:| CUACACAGUGCCC-UCCAUGCACUGGGGAC Ube3b mmu-miR-483 720 743 -UGUUCU--GCCCUCCCCUCCUCACU |||:| :||||| ||||| GACAGGCCCUGGGAGCUGAGGAU--- Ube3b mmu-miR-484 394 411 UAGCCCUCCCCUGACUCGGACU |||||| ||||||| --AGGGAGGCCACUGAGCA--- Ube3b mmu-miR-485-5p 295 322 CUUAAGUA-GUGCCGG------UCGGAGA- ||| :|||||| ||||||| ---CUCAGGUACGGCCUCGCCAAGCCUCUA Ube3b mmu-miR-488 776 802 -AACU-CUCACGAU--AAUAGACCC- |||: | |||| ||:|||||| GUUGGCGCUUGCUCUUUUGUCUGGGA Ube3b mmu-miR-491 964 998 -GGAGUACCUUCCCA---------AGG-GGUGA- ||| |||||:| || ||| ||||| CCCUGAUGGAGGAGUCCUGGCCCCUCCUCCACUC Ube3b mmu-miR-500 1204 1225 GACUUGGGA-ACGGGUCCACGUA ||:|||| ||||| ||||| -AGAGCCCUGUGCCCC-GUGCAC Ube3b mmu-miR-501* 1202 1225 -GUUUAGGA--ACGGGCCCACGUAA ||:| || ||||| ||||| GCAGAGCCCUGUGCCCC-GUGCAC- Ube3b mmu-miR-503 1345 1381 CGUCAUGAC-AAGGG---------------CGACGAU- ||| ||| ||||| ||||||: -GAGU-CUGCUUCCCGGCAGUUAUGUCAUAGCUGCUGU Ube3b mmu-miR-540 41 68 -GGUCCUAG------CUGGAGACUGGA |||||:| | |||| |||| GCCAGGGUACCCACAGCCCUCAGACCC Ube3b mmu-miR-551b 401 423 -GUGACUU-UGGUUCAUACCCAGC ||||||: || ||| ||||| CCACUGAGCAC--AGUCAGGGUCU Ube3b mmu-miR-615 886 908 UUCUCC--CUCUGGGU-CCGAGCCU |||| |||:|||| ||||: -UGAGGCAGAGGCCCAGGGCUUA-- Ube3b mmu-miR-652 1394 1415 ACGUGUUG-GGAUCACCGCGGUAA :||:| |||:||||||||| --AGCAGCUCCUGGUGGCGCCAG- Ube3b mmu-miR-665 490 518 AUUCCC-UGG-------AGUCGGAGGACCA |||| ||| |||||| ||||| -CAGGGAACCCUUGCUGUCAGCC-CCUGGC Ube3b mmu-miR-666 1186 1205 CCGAGAGUGUCGACACGGGCGA |:|| | ||||| ||||||| UGUUC-C-CAGCU-UGCCCGCA Ube3b mmu-miR-669b 1217 1242 UGUACGUGU---ACGUGUGUUUUGA |:|||||| |||||| : ||| CCGUGCACAGCCUGCACAGGUAACA Ube3b mmu-miR-669c 740 759 UGUGUGUAGGUGUGUGUUGAUA |:||:||| |||||| || -GAUACGUCC-CACACAUCUC- Ube3b mmu-miR-670 479 497 AAGUGGUGUAUGUGAGUCCCUA :|||| :| ||||||| --GGCCAC--GCUGUCAGGGAA Ube3b mmu-miR-671 381 404 GGAGGUCGGGGA-GGUCCCGAAGGA |||||:||| |||||| || --CCCAGCUCCUGCCAGGGAGGCCA Ube3b mmu-miR-672 651 671 -GUGUGUGUCAUGUGGUUGGAGU :|| :|||||:| |||:|| CUACCUACAGUGC-CCAGCCG-- Ube3b mmu-miR-673 114 146 -GAGGU-------UCCUGG-UCUCGAC-ACUC ||||| :|||| ||:|||| ||| CCUCCAUGCACUGGGGACAGAGGGCUGAUGAA Ube3b mmu-miR-674 446 483 AUGUGGUG---------AGGGUA---GAGUCA--CG- ||||||| ||||| ||||| || CACACCACAGCCCUCCUUCCCAAGUCCUCAGCAGGCC Ube3b mmu-miR-674* 712 739 -AACAAGACU--CU---ACCCUCGACAC ||| |||| |: ||||||||| UUUGCACUGACAGGCCCUGGGAGCUGA- Ube3b mmu-miR-675-3p 1247 1273 UGACUCGCCAAU----CCCGUAUGUC- ||||| |||| ||||| ||:| CCUGAGA-GUUACAGCGGGCACACGGG Ube3b mmu-miR-678 151 183 -GGAGGUCAGGAA---------CGUGGCUCUG- || |||||:|| || |:||||| CCCCCCAGUUCUGCCCUGUGGGGC-CUGAGACC Ube3b mmu-miR-680 867 901 -GGGGGU---------ACAG--UCGUCUACGGG- :|:||| |||: :||||| |||| UUCUCCAGAUUCAGGAUGUUGAGGCAGAGGCCCA Ube3b mmu-miR-681 383 403 -UCGACGGACGGUCGCUCCGAC |||| |||||||| ||||| CAGCU-CCUGCCAGGGAGGCC- Ube3b mmu-miR-682 692 726 GUCUGAAGUGACA----------C-UGAC-GUC- :||||||| || | |||| ||| GGGACUUCAGAGUCCGUCCUUUUGCACUGACAGG Ube3b mmu-miR-683 1233 1266 CUCC--UGUGUCG---------AAUGUCGUCC- ||| |||||| |||||||:|| CAGGUAACACAGAGCCUGAGAGUUACAGCGGGC Ube3b mmu-miR-685 1162 1179 CACGGAGUGGAGUCGGUAACU ||:|||| || |||| -AGCUUCACGUCUGCCAA--- Ube3b mmu-miR-688 255 274 CUUAUUCAUCA-GCGGACGCU- ||| :|||||:|| ---CAAGGCCUGUGCCUGUGAG Ube3b mmu-miR-691 933 948 AAAAGACGGAGAGAAGUCCUUA ||||||| ||||| ---CCUGCCUCA--UCAGGU-- Ube3b mmu-miR-693-3p 1358 1379 AAUGUCGGUGUAGACUUUCGACG- :|||::|::|| |||||| -GGCAGUUAUGUCAU--AGCUGCU Ube3b mmu-miR-696 1254 1272 GGGUGUCGUUCGUGUGCG ::|||||::||||||| GUUACAGCGGGCACACGG Ube3b mmu-miR-697 867 888 -AGAGGUGUCCUGGUCCUACAA- |||||| | :||||||||| UUCUCCAGAU--UCAGGAUGUUG Ube3b mmu-miR-699 1204 1231 GCUCGGUCCA------GCGUGACGGA- ||||| || :|||| |||| AGAGCCCUGUGCCCCGUGCACAGCCUG Ube3b mmu-miR-7 406 428 GUUGUUUUAGUGAUCAGA-AGGU |:|| |:||| :|||| ||| GAGCACAGUCAG-GGUCUCUCCU Ube3b mmu-miR-704 727 749 -GAUCCUCGUCUCGUGUACAGA ||:||||| ||| |:| ||| CCUGGGAGCUGAGGAUACGUCC Ube3b mmu-miR-705 932 967 ACGGGUGGGGU---------------GGAGGGUGG- ||::||:|| ||||||||| -UCCUGCCUCAUCAGGUUCUUGUCUCCCUCCCACCC Ube3b mmu-miR-706 404 427 AAAAAACUCU-----GUCCCAAAGAGA |||| |||||| |||| ----CUGAGCACAGUCAGGGUCUCUCC Ube3b mmu-miR-709 929 959 AGGAGGACGGAG----------ACGGAGG- :|||||||||| ||:|||| GUCUCCUGCCUCAUCAGGUUCUUGUCUCCC Ube3b mmu-miR-713 501 533 -CGACA-------------CACGGAAGUCACGU ||||| |||| ||||||: UGCUGUCAGCCCCUGGCCUGUGCA-UCAGUGUC Ube3b mmu-miR-714 714 749 -CGCUGGCUGGCCGGGA--------------GCAGC || ||:||| |||||| |||| UGC-ACUGACAGGCCCUGGGAGCUGAGGAUACGUCC Ube3b mmu-miR-715 1255 1274 -GUG-CGCCCCCACACGUGCCUC :|| ||||| |||||: UUACAGCGGGCA----CACGGGA Ube3b mmu-miR-719 719 742 -UUGUAAAAAGACA-UCGGCUCUA :||| ||| |||:|||: UGACAGGCC-CUGGGAGCUGAGGA Ube3b mmu-miR-721 703 722 AAGG-GGGAAAAUUAACGUGAC- ||| :||||| ||||||| GUCCGUCCUUU----UGCACUGA Ube3b mmu-miR-744 501 526 -CGACAAUC-GGGAUCGGG-GCGU- ||||| || ||||:|||: :||| UGCUGUCAGCCCCUGGCCUGUGCAU Ube3b mmu-miR-761 486 508 ACACAGUCAAAGUGGG-ACGACG- |||||| |||| |||||: -CUGUCAGGGA-ACCCUUGCUGUC Ube3b mmu-miR-762 976 995 CGAGACAGGGCCGGGGUCGGGG- ||||:|||||| |:|| ----AGUCCUGGCCCCUCCUCCA Ube3b mmu-miR-763 515 543 -CGGUGACCAAGA---AGGGUCGA-CC- ||| || || |||:|||| || GGCCUGUGCAUCAGUGUCCUAGCUUGGG Ube3b mmu-miR-764-3p 916 937 UGUCAACGGUGAUACCGGAGGA- :||| |||||| |:||||| CUAGUAGCCACUU--GUCUCCUG Ube3b mmu-miR-764-5p 245 279 -UCCUCCUGU-------------ACACUCGUGG- ||||||||| ||||||| || GAGGAGGACACAAGGCCUGUGCCUGUGAGCUCCU Ube3b mmu-miR-770-3p 1159 1185 -GGUCGAGGUGCAGUCCG--GGUGC- ||||||:|||||| | |||:| UCCAGCUUCACGUCUGCCAACCAUGU Ube3b mmu-miR-7b 406 428 -UUGUUUUAGUGUUCAGA-AGGU |:|| |:||| ::|||| ||| GAGCACAGUCA-GGGUCUCUCCU Ube3b mmu-miR-801 302 333 CAGCUAAGGCG---------UGCGUGUCGUUAG ||: :||| |:||||||||| -ACGGCCUCGCCAAGCCUCUAUGCACAGCAAA- Ube3b mmu-miR-93 650 687 -GAUGGA-------------CGUGCUUGUCGUGAAAC |||||| || :|::|||:||||| CCUACCUACAGUGCCCAGCCGCCUGGGCAGUACUUUA Ube3b mmu-miR-96 888 927 -UCGUUUUUA----C-----------ACGAUCA-CGGUUU :|||:|:: | ||||||| |||| AGGCAGAGGCCCAGGGCUUAGUAACCUGCUAGUAGCCAC- Ube3b mmu-miR-98 921 943 UUGUUAUGUUGAAU----GAUGGAGU- :| ||||: ||:||||| -----AGCCACUUGUCUCCUGCCUCAU Ube3b mmu-miR-130a 713 720 UA---------------------------CGGGAAAAUUGUAACGUGAC |:|||| |||||||| AGUACUUUAUUCCAGGGACUUCAGAGUCCGUCCUU------UUGCACUGA Ube3b mmu-miR-130b 713 720 UA---------------------------CGGGAAAGUAGUAACGUGAC |:|||| |||||||| AGUACUUUAUUCCAGGGACUUCAGAGUCCGUCCUU------UUGCACUGA Ube3b mmu-miR-143 757 764 A---------CUCGAUGUCACGA-------------AGUAGAGU |||||: || ||||||| CAGGCCCUGGGAGCUG-AGGAUACGUCCCACACAUCUCAUCUCC Ube3b mmu-miR-148a 120 127 --------------------UGUUUCAAGACAUC-ACGUGACU ||| ||| |||||||: CACCCAAGGUUGGGGAUGCUACACAGUGCCCUCCAUGCACUGGG Ube3b mmu-miR-148a 714 721 U-------------------GUUUCAAGACAUC--ACGUGACU ||:||| | |||||||| GUACUUUAUUCCAGGGACUUCAGAGUCCGUCCUUUUGCACUGAC Ube3b mmu-miR-148b 120 127 --------------------UGUUUCAAGACAC-UACGUGACU ||| ||| ||||||||: CACCCAAGGUUGGGGAUGCUACACAGUGCCCUCCAUGCACUGGG Ube3b mmu-miR-148b 714 721 U-------------------GUUUCAAGACACU--ACGUGACU ||:||| | |||||||| GUACUUUAUUCCAGGGACUUCAGAGUCCGUCCUUUUGCACUGAC Ube3b mmu-miR-149 1002 1009 -------CCUCACUUCU--------------GUGCCUCGGUCU ||||| |: |::|||||||| UGAUGGAGGAGUCCUGGCCCCUCCUCCACUCCGUGGAGCCAGC Ube3b mmu-miR-152 120 127 --GGGUUCAAGACA--------------------GUACGUGACU |||||| :|| |||||||||: CACCCAAGG-UUGGGGAUGCUACACAGUGCCCUCCAUGCACUGGG Ube3b mmu-miR-152 714 721 ---------GGGUUCA---------AGACAGU---ACGUGACU :|||:| || ||| |||||||| GUACUUUAUUCCAGGGACUUCAGAGUCCGUCCUUUUGCACUGAC Ube3b mmu-miR-184 704 711 -UGGGAAUAGUCAAG---------------------AGGCAGGU :||: |||| | ||||||| CGCCUGGG-CAGUACUUUAUUCCAGGGACUUCAGAGUCCGUCCU Ube3b mmu-miR-28 272 279 ----GAGUUAUCU-----------------GACACUCGAGGAA ||| :|| |||||||||||| UGCCCUCUGAGGAGGACACAAGGCCUGUGCCUGUGAGCUCCUC Ube3b mmu-miR-301b 713 720 ACGAAACUGUUAU------------------GGU-AACGUGAC || |||||||| AGUACUUUAUUCCAGGGACUUCAGAGUCCGUCCUUUUGCACUGA Ube3b mmu-miR-31 234 241 GUC----------------GAUACGGUCGU------AGAACGGA ||:|| :|| ||||||| AGAGCAACUCCUGGAGAUUCUGUGA-GGCUUUCUUCUCUUGCCC Ube3b mmu-miR-324-5p 97 104 G-------------UGGUUAC----GGGAU----CCCCUACGC :||| ||| |||||||| AGACCCUCUCAAUAGCCAUGAGACACCCAAGGUUGGGGAUGCU Ube3b mmu-miR-326 588 595 U--------GACCUC--------------CUUCCCGGGUCUCC |||||| |:|| ||||||| AUCGUUCCCCUGGAGAACAGCCCAUUUCUGGAGUACCCAGAGC Ube3b mmu-miR-337 732 739 UU------------------------UCCGUAGUAUAUCCUCGACUU |||| |:||||||||: UUCAGAGUCCGUCCUUUUGCACUGACAGGCCC----UGGGAGCUGAGG Ube3b mmu-miR-370 474 481 ---------------UUGGUCC-AAGGU----GGGGUCGUCCG |:|| |||| ||:|||||||| GGUGGUCCACACCACAGCCCUCCUUCCCAAGUCCUCAGCAGGCC Ube3b mmu-miR-484 592 599 U---------------------AGCCCUCCCCUGACUCGGACU || |||| ||||||| UUCCCCUGGAGAACAGCCCAUUUCUGGAGUACCCAGAGCCUGC Ube3b mmu-miR-484 1052 1059 UAGCCCUCCCCUGA---------------------CUCGGACU ||||||| UACAGCGCUCAAAGCAAGAAAACGCCUUCCCCAAGGAGCCUGC Ube3b mmu-miR-484 1244 1251 UAGCCC-------------------UCCCCUGA--CUCGGACU ||| || |||||||| CCUGUGCCCCGUGCACAGCCUGCACAGGUAACACAGAGCCUGAG Ube3b mmu-miR-665 206 213 AUUCC-----CUGGAGUCG------------------GAGGACCA :|| ||||| :|| ||||||| --GGGCCUGAGACCUGGGCCUAGUGAUUACAGAGCAACUCCUGGA Ube3b mmu-miR-665 829 836 AUU-CCCUGGAGU-------------------CG-GAGGACCA ||||||||| || ||||||| GUCUGGGACCUCAUUCUCUUUUCCCACACACUGCGCUCCUGGG Ube3b mmu-miR-665 1399 1406 AUUCCC-------------------UGGAGUCG--GAGGACCA |:|||||| |||||||| UAUGUCAUAGCUGCUGUUUGAUGACAUCUCAGCAGCUCCUGGUG Ube3b mmu-miR-666 1197 1204 C------------------------CGAGAGUGUCGACACGGGCGA |:|| | ||||| ||||||| AGCUUCACGUCUGCCAACCAUGUGUGUUC-C-CAGCU-UGCCCGCA Ube3b mmu-miR-670 489 496 AAG-----------------------UGGUGUAUGUGAGUCCCUA :|||| :| ||||||| AGCCCUCCUUCCCAAGUCCUCAGCAGGCCAC--GCUGUCAGGGAA Ube3b mmu-miR-679 409 416 -----------------UGGUUC-UCA-GUGGA--GUGUCAGG :|||:| || |||: ||||||| AACCAAGCCCAGCUCCUGCCAGGGAGGCCACUGAGCACAGUCA Ube3b mmu-miR-696 1264 1271 G-------------------------GGUGUCGUUCGUGUGCG ::|||||::||||||| UGCACAGGUAACACAGAGCCUGAGAGUUACAGCGGGCACACGG Ube3b mmu-miR-697 879 886 ----------------------AGAGGUGUCCUGGUCCUACAA |:|| ||| :||||||||| UUUCCCCAUUUCCCUUAAGAACUUUCUCCAGAUUCAGGAUGUUG Ube3b mmu-miR-705 958 965 AC--------GGGUGGGGU---------------GGAGGGUGG || ||:|| ||||||||| CCACUUGUCUCCUGCCUCAUCAGGUUCUUGUCUCCCUCCCACCC Ube3b mmu-miR-709 337 344 A-------------GGAGG-ACGGA----------GACGGAGG ||||: ||| |||||||: ACGGCCUCGCCAAGCCUCUAUGCACAGCAAAGUCCCUGCCUCUA Ube3b mmu-miR-709 934 941 A-----------------------GGAGGACGGA-GACGGAGG || |:||:|| ||||||| CAGGGCUUAGUAACCUGCUAGUAGCCACUUGUCUCCUGCCUCA Ube3b mmu-miR-710 1458 1465 GA-------------------GUUGAGAGG--GGUUCUGAACC :||||| |:|||||||| AGGGGUUUUUGUUUUUGUAGGUAACUCGUGGACUAAGACUUGU Ube3b mmu-miR-721 713 720 A-------------------------AGG-GGGAAAAUUAACGUGAC ||| :|||| |||||||| AGUACUUUAUUCCAGGGACUUCAGAGUCCGUCCUU----UUGCACUGA Ube3b mmu-miR-764-5p 405 412 -------------------------UCCUCCUGUACACUCGUGG :||||| || ||||||| AGGCAACCAAGCCCAGCUCCUGCCAGGGAGGCCAC-UGAGCACA Ube3b mmu-let-7a 318 344 uGAUA--UGUUGGAU----GAUGGAGu |||| |||:| | ||:|||| tCTATGCACAGCAAAGTCCCTGCCTCt Ube3b mmu-let-7b 746 775 uuGGUGUGU----UGGA----UGAUGGAGu ||||||| |:|| || :|||| tcCCACACATCTCATCTCCACACCGCCTCt Ube3b mmu-let-7c 317 344 uuGGUA--UGUUGGAU----GAUGGAGu |:|| |||:| | ||:|||| ctCTATGCACAGCAAAGTCCCTGCCTCt Ube3b mmu-let-7e 915 941 uGAU-AU-GUUG----GAGGAUGGAGU ||| || | || |||||:||||| gCTAGTAGCCACTTGTCTCCTGCCTCA Ube3b mmu-let-7f 915 941 uGAU-AU--GU---UAGAUGAUGGAGU ||| || || :||| ||:||||| gCTAGTAGCCACTTGTCTCCTGCCTCA Ube3b mmu-miR-101a 1357 1381 gaaGUCAAU--AGUGUC-AUGACAu |||||| |||:|| |:|||| cggCAGTTATGTCATAGCTGCTGTt Ube3b mmu-miR-106a 766 787 aUGGACGUGACAAUCGUGAAac ||| | |||||:||:||| cACCGCCTCTGTTGGCGCTTgc Ube3b mmu-miR-106b 767 787 UAGACGUGACAGUCGUGAAau | | | ||||::||:||| ACCGCCTCTGTTGGCGCTTgc Ube3b mmu-miR-10b 410 433 UGU--GUUUAAGCCAAGAUGUCCC ||| ||:: || | |||:|||| ACAGTCAGGGTCTCTCCTATAGGG Ube3b mmu-miR-124a 1201 1219 cCGUAAGUGGCGCACGGaau ||| :|| :||||| cGCA-GAGCCCTGTGCCccg Ube3b mmu-miR-125a 402 420 GUGUCCAAUUUCCCAGAGUCCCu ||| | | || |||||| CACTGAGCACAG----TCAGGGt Ube3b mmu-miR-126-3p 285 305 cguaauaaugagugCCAUGCu |||||| gttctgaaaactcaGGTACGg Ube3b mmu-miR-128a 252 272 uuuucUCUGGCCAAGUGACACU ||:|| || | |||||| acacaAGGCCTGTGC-CTGTGA Ube3b mmu-miR-128b 252 272 cuuucUCUGGCCAAGUGACACU ||:|| || | |||||| acacaAGGCCTGTGC-CTGTGA Ube3b mmu-miR-129-3p 119 140 UACGAAAAACCCC--AUUCCCGAa |||| ||||| :|||||| ATGC--ACTGGGGACAGAGGGCTg Ube3b mmu-miR-130a 705 720 uaCGGGAAAAUUGUAACGUGAC |:|||| |||||||| ccGTCCTT------TTGCACTG Ube3b mmu-miR-130b 701 720 uaCGGGAAAGUAGUAACGUGAC |:|| | | | |||||||| gaGTCCGTCCTT--TTGCACTG Ube3b mmu-miR-130b 110 126 uACGGGAAAGUAGUAACGUGAC ||||| | || ||||||| gTGCCC-TCCA----TGCACTG Ube3b mmu-miR-134 1318 1342 ggGGAGAC---CAGUUGGUCAGUGu ||| | ||| ::|:||||| gaCCTAGGGCTGTCTGTCGGTCACc Ube3b mmu-miR-140 389 406 GAUGGUAUCCCAUUUUGGUGAC ||:|| |||| |::|||||| CTGCC--AGGG--AGGCCACTG Ube3b mmu-miR-140* 152 173 aGGCACCAAGAUGGGACACCau || |||||:|||||||| cCCCCAGTTCTGCCCTGTGGgg Ube3b mmu-miR-142-3p 88 107 GGUAUUUCAUCCUUUGUGAUGU || ||:|| ||::|::||||| CC--AAGGTTGGGGATGCTACA Ube3b mmu-miR-143 736 764 ACU-CGAUGUCACG------A-AGUAGAGu ||| | ||| || | | ||||||| TGAGGATAC-GTCCCACACATCTCATCTCc Ube3b mmu-miR-148a 698 721 uGUUUCAAGAC---AUCACGUGACU ||:|| || | | |||||||| tCAGAG-TCCGTCCTTTTGCACTGA Ube3b mmu-miR-148a 105 127 UGUUUCAAGACA-UCACGUGACu ||| ||| | | ||||||| ACACAGTGCCCTCCATGCACTGg Ube3b mmu-miR-148a 1202 1227 uGUUUCAAGACAU----CACGUGACu ||:|| ||||: |||||| | gCAGAGCCCTGTGCCCCGTGCACAGc Ube3b mmu-miR-148b 105 127 UGUUUCAAGACA-CUACGUGACu ||| ||| | | |||||||| ACACAGTGCCCTCCATGCACTGg Ube3b mmu-miR-148b 698 721 uGUUUCAAGAC---ACUACGUGACU ||:|| || | | |||||||| tCAGAG-TCCGTCCTTTTGCACTGA Ube3b mmu-miR-148b 1202 1227 uGUUUCAAGACAC----UACGUGACu ||:|| ||||| :||||| | gCAGAGCCCTGTGCCCCGTGCACAGc Ube3b mmu-miR-149 988 1009 ccucacuucuGUGCCUCGGUCu |::|||||||| tcctccactcCGTGGAGCCAGc Ube3b mmu-miR-149 1106 1131 CCUCACUUCUGUGC-----CUCGGUCu ||: ||:|| ||:| |: |||| GGGCTGGAG-CATGGGGTAGGCCCAGg Ube3b mmu-miR-151 1045 1068 GGAGUUCCUCGGA---GUCAgauc || |||||||||| |||| CCCCAAGGAGCCTGCACAGTggga Ube3b mmu-miR-152 104 127 ggGU-UCAAGACA-GUACGUGACu || ||| | | ||||||||| taCACAGTGCCCTCCATGCACTGg Ube3b mmu-miR-152 698 721 gGGUUCAAGACAG---UACGUGACU | :|| || ||| |||||||| tCAGAG-TCCGTCCTTTTGCACTGA Ube3b mmu-miR-15a 1354 1379 guGUUUGGUAAUAC----ACGACGAu | ::| :||||| |||||| tcCCGGCAGTTATGTCATAGCTGCTg Ube3b mmu-miR-16 1357 1379 GCGGUU-AUAAAUGCACGACGAu || ||: ||| | |||||| CGGCAGTTATGTCATAGCTGCTg Ube3b mmu-miR-17-3p 104 130 AUGU-UCACGGGA-----GUGACGUCa |||| |||||||| ||||| :| TACACAGTGCCCTCCATGCACTGGGGa Ube3b mmu-miR-182 1182 1203 ACACUCAAGAUGGU--AACGGuuu |||| |||| ||| ||||| TGTGTGTTC--CCAGCTTGCCcgc Ube3b mmu-miR-183 94 117 guCACUUAAGAUG-GUCACGGUAu | |:|| |||| ||||||| | ttGGGGATGCTACACAGTGCCCTc Ube3b mmu-miR-184 680 711 ugGGAAUA--GUC----AAG----AGGCAGGu |:|||| ||| ||| ||||||| taCTTTATTCCAGGGACTTCAGAGTCCGTCCt Ube3b mmu-miR-184 935 962 ugGGAAUAGUC-----A-AGAGGCAGGu ||| ||||| | ||||| ||| tgCCTCATCAGGTTCTTGTCTCCCTCCc Ube3b mmu-miR-187 722 746 GGCC--GA-CGUUGUGUUCUGUGCu | || || | |:| |:||:||| CAGGCCCTGGGAGCTGAGGATACGt Ube3b mmu-miR-188 112 140 uGGGAGGUG-GU-AC----G-UUCCCUAC |||||||: || || | :|||| || gCCCTCCATGCACTGGGGACAGAGGGCTG Ube3b mmu-miR-193 175 193 GACCCUGAAACAUCCGG-UCAa ||| ||| |:|||| ||| CTGAGAC---CTGGGCCTAGTg Ube3b mmu-miR-196a 635 657 ggUUGUUGUACUU--UGAUGGAU ||| ||||||: ||||||| agAACCACATGAGACCCTACCTA Ube3b mmu-miR-201 104 130 ucuUGUUACGGAA------UGACUCau |||:|||| | ||||:| tacACAGTGCCCTCCATGCACTGGGga Ube3b mmu-miR-205 1396 1419 GUCUGAGG-CCACC---UUACUUCCU ||| |||| ||||| | |||||| CAG-CTCCTGGTGGCGCCA-GAAGGA Ube3b mmu-miR-207 1252 1278 CUCCCU-CCUCUCG---GUCCUCUucg ||| | | |:|| |:||||| GAGTTACAGCGGGCACACGGGAGAgtt Ube3b mmu-miR-211 119 139 UCCGUUUCCUACUGUUUCCCuu | ||| ||: ||||:|||| ATGCACTGGG-GACAGAGGGct Ube3b mmu-miR-214 1327 1355 GACGGACAGACA--------CGGACGAca |||:||||| || |:||||| CTGTCTGTCGGTCACCTAGAGTCTGCTtc Ube3b mmu-miR-214 1304 1330 gacGG--ACAGACAC-GGA---CGACA || ||||| || ||| ||||| accCCTTTGTCTTTGACCTAGGGCTGT Ube3b mmu-miR-215 1325 1341 CAGACAGUUUAGUAUCCAGUa | ||||| ::| ||||| GGCTGTC----TGTCGGTCAc Ube3b mmu-miR-22 1141 1160 uguCAAGAAGUUGACCGUCGAa ||||| || ||::||| gggGTTCTGGAA--GGTGGCTc Ube3b mmu-miR-221 1352 1375 uuuGGGUCGUCUGUUAC---AUCGA |||:|||| : ||| ||||| cttCCCGGCAG-TTATGTCATAGCT Ube3b mmu-miR-222 1133 1159 cUCUGGGUCAUC--GGUC-UACAUCGA || ||| | :| |::| | ||:||| aAGCCCCTGGGGTTCTGGAAGGTGGCT Ube3b mmu-miR-24 166 189 GACA---AGGACGACUUGACUCGGu |||| |||| || |||:||| CTGTGGGGCCTG-AGACCTGGGCCt Ube3b mmu-miR-28 258 279 gaguuauCUGACACUCGAGGAa | |||||||||||| ggcctgtGCCTGTGAGCTCCTc Ube3b mmu-miR-292-3p 1387 1413 UGU-GAGUUUU---GGACCGCCGUGaa ||| ||||: | |||||:|||:| ACATCTCAGCAGCTCCTGGTGGCGCca Ube3b mmu-miR-295 901 929 uCUGAGUU-UU---C-AUCAUC-GUGAAa |:||:|: || | |||||| ||||| gGGCTTAGTAACCTGCTAGTAGCCACTTg Ube3b mmu-miR-298 563 584 cCUUCUUGUCGGGAGGAGACgg |:|||||||||| ::|||| tGGAGAACAGCCCATTTCTGga Ube3b mmu-miR-301 104 126 cgaaacuguuaugauaACGUGAC ||||||| tacacagtgccctccaTGCACTG Ube3b mmu-miR-301b 697 720 acgaaaCUGUUAUGGUAACGUGAC | | :| |: |||||||| ttcagaGTCCGTCCTTTTGCACTG Ube3b mmu-miR-301b 101 126 ACGAAACUGUUAUG---GUAACGUGAC ||| | |||:|:| | ||||||| TGC-TACACAGTGCCCTCCATGCACTG Ube3b mmu-miR-30e* 267 294 GACAUUU------GUAGGC-UGACUUUc ||||:|: | |||| |||||| CTGTGAGCTCCTCCTTCCGTTCTGAAAa Ube3b mmu-miR-31 218 241 GUCGAUACGGUCG--UAGAACGGa | |: | ||: | ||||||| CTGTGAGGCTTTCTTCTCTTGCCc Ube3b mmu-miR-31 316 342 gucGAUACG-GUCGU----AGAACGGA |||||| ||||| | ||||| cctCTATGCACAGCAAAGTCCCTGCCT Ube3b mmu-miR-320 365 390 AAG---CGGGAGAGUUGGGUCGAaaa ||| | | | |:||||||| TTCCCAGGCAACCAAGCCCAGCTcct Ube3b mmu-miR-324-3p 1127 1157 GGUC--GUCGUGGACC------CCGU-CACC |||| ||| ||||| || | |||| CCAGGAAAGCCCCTGGGGTTCTGGAAGGTGG Ube3b mmu-miR-324-5p 85 104 GUGGUUACGGGAUCCCCUACGc |||| | | | |||||||| CACCCAAG--GTTGGGGATGCt Ube3b mmu-miR-324-5p 523 547 GUGGUUACGGGAUC---CCCUacgc ||:||:||:||||| |||| CATCAGTGTCCTAGCTTGGGAaaga Ube3b mmu-miR-326 579 595 uGACCUCCUUCCCGGGUCUCc |||||| | ||||||| tCTGGAGTA----CCCAGAGc Ube3b mmu-miR-326 1108 1133 uGACCUC---CUUC--CCGGGUCucc |||||| |::| ||||||| gCTGGAGCATGGGGTAGGCCCAGgaa Ube3b mmu-miR-328 878 901 ugCCUUC----CCGUCUCUCCCGGUC ||| | ||| ||||| |||| caGGATGTTGAGGC--AGAGGCCCAG Ube3b mmu-miR-33 108 124 GUUACGUUGAUGUUACGUG ||:||| || | |||||| CAGTGC-CCT-CCATGCAC Ube3b mmu-miR-331 1125 1145 aaGAUCCUAUCCGGGUCCCCg | |||| || ||| |||| gcCCAGGAAAGCCCCTGGGGt Ube3b mmu-miR-337 721 739 UUUCCGUAGUAUAUCCUCGACUu | |||| | |:|||||||| ACAGGC--C--CTGGGAGCTGAg Ube3b mmu-miR-338 1092 1113 AGUUGUUU-UAGUGACUACGACCU |:|:|||| || || : |||||| TTAGCAAAGAT--CTTGGGCTGGA Ube3b mmu-miR-339 1406 1427 ACUCGAGGACCUCCU--GUCCCu || || || | |||| ||||| TG-GCGCCAGAAGGAAGCAGGGg Ube3b mmu-miR-345 1106 1127 CGUGACCU-GAUCCCCAGUCGu | :||||| | ||||| :|| GGGCTGGAGCATGGGGTAGGCc Ube3b mmu-miR-346 1243 1270 UCUCCG----UCCGUG-AGCCCGUCUGu |||| | || :|| |||||| || AGAGCCTGAGAGTTACAGCGGGCACACg Ube3b mmu-miR-34c 469 491 cguuAGUCGAUUGAUGUGACGGa ||||| ::| ||:|||:| gtccTCAGCAGGCCACGCTGTCa Ube3b mmu-miR-351 369 398 GUCCG-AGUUUC---CCGAGGA--GUCCCU ||||| | ||| |||||| |||||| CAGGCAACCAAGCCCAGCTCCTGCCAGGGA Ube3b mmu-miR-351 349 374 guccGAGUUUCCCGAG--GAGUCCcu | ||: || ||| | |||| tgtcCACAGTGGCCTCTTCCCAGGca Ube3b mmu-miR-361 203 224 caUGGGGACCUCUAAGACuauu ||:||||||||||||| caACTCCTGGAGATTCTGtgag Ube3b mmu-miR-362 665 697 aaguGUGGAUCC----------AAGGUUCCUaa |:|||:|| |||||:||| cagcCGCCTGGGCAGTACTTTATTCCAGGGAct Ube3b mmu-miR-363 1058 1082 aaUGUCUACCU--A-UGGCACGuua |||| ||| | :|||||| gcACAGTGGGAAGTGGCCGTGCcct Ube3b mmu-miR-370 463 481 uuGGUCCAAGGUGGGGUCGUCCG ||| || ||:|||||||| tcCCAAGT----CCTCAGCAGGC Ube3b mmu-miR-370 434 460 UUGGUCCA--AGGUG-GG-GUCGuccg | |||||| ||||| || |||| ATCCAGGTGGTCCACACCACAGCcctc Ube3b mmu-miR-379 1157 1177 gGAUG-CAAGGUAUCAGAUGGU || | | |:|| ||||:||| gCTCCAGCTTCA-CGTCTGCCA Ube3b mmu-miR-380-5p 1324 1343 CGCGUACAAGAUA-CCAGUUGGu | || || |||:| |||| ||| GGGC-TG-TCTGTCGGTC-ACCt Ube3b mmu-miR-411 1060 1080 UGACUCCCAAUCACCUGGCACaa || | ||| ||| |:||||| ACAGTGGG-AAGT-GGCCGTGcc Ube3b mmu-miR-422b 359 385 CCG--GAA--GACUG-AGGUUCAGGUC ||| ||| | |:| ||||| |||| GGCCTCTTCCCAGGCAACCAAGCCCAG Ube3b mmu-miR-423 166 188 GACUCCCCGGAGUCUGG-CUCGa ||| ||||||| ||||| |:|| CTGTGGGGCCTGAGACCTGGGCc Ube3b mmu-miR-425 439 469 CCGCC---UGUGCUGU-------AAGGGCUa ||:|| |||| ||| ||||| | GGTGGTCCACACCACAGCCCTCCTTCCCAAg Ube3b mmu-miR-449b 1209 1229 GGUCGAUCGUUACGUGACGGA || |: | :||||| |||| CCTGTGCCCCGTGCACAGCCT Ube3b mmu-miR-450b* 1177 1195 uacGUACGUUUUACAAGGGUua ||||: :|||||||| aacCATGT---GTGTTCCCAgc Ube3b mmu-miR-455-5p 880 902 gCUACAUC-AGGUUUCCGUGUau ||||| | ||:|||| || gGATGTTGAGGCAGAGGCCCAgg Ube3b mmu-miR-465-3p 388 409 aGAUGAAUCUUUCCGG-GACUag ||:| ||::||||| |||| cCTGC-CAGGGAGGCCACTGAgc Ube3b mmu-miR-469 1134 1159 cCUGUGGUUCUAGUUACUUUCUCCGu | | |:::|:|: |||:| ||| aGCCCCTGGGGTTCTGGAAGGTGGCt Ube3b mmu-miR-483 721 745 UGUUCUG--CCCUCCCCUCCUcacu |||:| | ||||| ||||| ACAGGCCCTGGGAGCTGAGGAtacg Ube3b mmu-miR-484 578 599 uAGCCCUCCCCUGACUCGGACu || |||| | ||||||| tTCTGGAGTACCCAGAGCCTGc Ube3b mmu-miR-484 1226 1251 uaGCCCUCCCC----UGACUCGGACU | | | || || |||||||| gcCTGCACAGGTAACACAGAGCCTGA Ube3b mmu-miR-484 1038 1059 uagcccuccccugaCUCGGACu ||||||| acgccttccccaagGAGCCTGc Ube3b mmu-miR-484 392 414 uagCCCUCCCCUGACUCG-GACu |||||| ||||||| | | ccaGGGAGGCCACTGAGCACAGt Ube3b mmu-miR-485-5p 290 310 CUUAAGUAGUGCCGGUCGGAGa ||| | ||| | |:||||| GAAAAC-TCAGGTACGGCCTCg Ube3b mmu-miR-485-5p 321 344 cuuaaGUAGUGCC--GGUCGGAGA || || | || |||||| atgcaCAGCAAAGTCCCTGCCTCT Ube3b mmu-miR-488 777 800 AACU-CUCAC--GAUAAUAGACCC |||: | || || ||:|||||| TTGGCGCTTGCTCTTTTGTCTGGG Ube3b mmu-miR-490 1112 1134 gUCGUACCUCA--GGAGGUCCaac |||||||:|| | ||||| gAGCATGGGGTAGGC-CCAGGaaa Ube3b mmu-miR-491 965 996 GGAGUACCUUCCCA---------AGG-GGUGA ||| |||||:| || ||| ||||| CCTGATGGAGGAGTCCTGGCCCCTCCTCCACT Ube3b mmu-miR-491 937 965 GGAGUACCUUCC-----CA-AG---GGGUGa |||||| ||| || || ||||| CCTCAT--CAGGTTCTTGTCTCCCTCCCACc Ube3b mmu-miR-500 1203 1224 GACUUGGGA-ACGGGUCCACGUa | ||:|||| || || ||||| CAGAGCCCTGTG-CCCCGTGCAc Ube3b mmu-miR-501* 1203 1225 GUUUAGGAAC---GGGCCCACGUaa ||:| || || ||| ||||| CAGAGCCCTGTGCCCC--GTGCAca Ube3b mmu-miR-503 1359 1379 CGUCAUGACAAGGGCGACGAu ||||| ||| : |||||| GCAGTTATGTCATAGCTGCTg Ube3b mmu-miR-540 42 67 GGUCCUA-----G-CUGGAGACUGGa |||||:| | | |||| |||| CCAGGGTACCCACAGCCCTCAGACCc Ube3b mmu-miR-546 993 1011 cUGAGGCA---CGGUGGua ||||||| |||| | cACTCCGTGGAGCCAGCtt Ube3b mmu-miR-551b 402 422 GUGACUUUGGUUCAUACCCAGc ||||| |:| ||| ||||| CACTG-AGCACAGTCAGGGTCt Ube3b mmu-miR-615 885 909 uuCUCC--CUCUGGGU-CCGAGCCu |||| |||:|||| ||||: | ttGAGGCAGAGGCCCAGGGCTTAGt Ube3b mmu-miR-652 1391 1415 acGU-GUUG-GGAUCACCGCGGUaa || ||:| |||:||||||||| ctCAGCAGCTCCTGGTGGCGCCAga Ube3b mmu-miR-665 1381 1406 auuccCUG--GAGUCG--GAGGACCA ||| |||||| |||||||| ttgatGACATCTCAGCAGCTCCTGGT Ube3b mmu-miR-665 188 213 auUCCCUGGAG--UCG--GAGGACCa || ||:: | ||| ||||||| ctAGTGATTACAGAGCAACTCCTGGa Ube3b mmu-miR-665 813 836 auucccUG-GAGUCG-GAGGACCa || | | || ||||||| tttcccACACACTGCGCTCCTGGg Ube3b mmu-miR-665 489 517 AUUCCCU--GG------AGUCGGAGGACCa | ||||| || |||| | ||||| TCAGGGAACCCTTGCTGTCAG-CCCCTGGc Ube3b mmu-miR-666 1184 1204 cCGAGAGUGUCGACACGGGCGa |: :|| ||||| ||||||| tGTGTTCCCAGCT-TGCCCGCa Ube3b mmu-miR-669b 1226 1248 uGUACGUGUACG-UGUGUUUUGa | |||||| |: |||||:|:| gCCTGCACAGGTAACACAGAGCc Ube3b mmu-miR-669c 739 759 ugUGUGUAGGUGUGUGUUGAua |:||:||| |||||| || ggATACGTCC-CACACATCTca Ube3b mmu-miR-670 472 496 aAGUGGU---GUAUGUGAGUCCCUa ||| || || :| ||||||| cTCAGCAGGCCACGCTGTCAGGGAa Ube3b mmu-miR-671 401 427 GGAGG-UCGGGGAGGUCCC-GA-AGGA || |: ||| | :||||| || |||| CCACTGAGCACAGTCAGGGTCTCTCCT Ube3b mmu-miR-672 652 672 gUGUGUGUCAUGUGGUUGGAGu || :|||||:| |||:|| | tACCTACAGTGC-CCAGCCGCc Ube3b mmu-miR-673 122 145 GAGGUUCCUG-GUCUCGAC-ACUc | |:::|||| ||:|||| ||| CACTGGGGACAGAGGGCTGATGAa Ube3b mmu-miR-674* 713 739 AACAAGACUCU-----ACCCUCGACac ||| |||| | ||||||||| TTGCACTGACAGGCCCTGGGAGCTGag Ube3b mmu-miR-678 152 181 GGAGGUCAGGA----ACG---UGG-CUCUG || |||||:|| ||: :|| ||||| CCCCCAGTTCTGCCCTGTGGGGCCTGAGAC Ube3b mmu-miR-679 391 416 uGGU-UCUCAGUGGA---GUGUCAGg ||| :||| | || ||||||| gCCAGGGAGGCCACTGAGCACAGTCa Ube3b mmu-miR-680 877 899 gggggUACAG--UCGUCUACGGG ||||: :||||| |||| tcaggATGTTGAGGCAGAGGCCC Ube3b mmu-miR-681 384 403 UCGACGGACGGUCGCUCCGac |||| |||||||| ||||| AGCT-CCTGCCAGGGAGGCca Ube3b mmu-miR-682 677 701 GUC-UGAAGUGA---CACUGACGUC ||| ||||:|:| | |||| ||| CAGTACTTTATTCCAGGGACTTCAG Ube3b mmu-miR-685 1161 1181 caCGGAGUGGAGUCGGUaacu ||:|||| || |||| caGCTTCACGTCTGCCAacca Ube3b mmu-miR-688 251 272 CU-UAUUCAUCA-GCGGACGCU || | ||| | :|||||:|| GACACAAGGCCTGTGCCTGTGA Ube3b mmu-miR-691 927 949 AAAAGACGGA--GAGAAGUCCuua || ||| ||| ||| ||||| TTGTCT-CCTGCCTCATCAGGttc Ube3b mmu-miR-693-3p 1357 1377 aauGUCGGUGUAGACUUUCGACG |||::|::|| | |||||| cggCAGTTATGTC--ATAGCTGC Ube3b mmu-miR-696 1254 1271 gggUGUCGUUCGUGUGCg |||||::||||||| gttACAGCGGGCACACGg Ube3b mmu-miR-697 866 886 AGAGGUGUCCUGGUCCUACAA |:||: ||| :||||||||| TTTCTCCAGATTCAGGATGTT Ube3b mmu-miR-699 1211 1229 gCUCGGUCCAGCGUGACGGA | ||| || |||| |||| tGTGCCCCGT-GCACAGCCT Ube3b mmu-miR-704 728 748 GAUCCUCGUCUCGUGUACAGa ||:||||| ||| |:| ||| CTGGGAGCTGAGGATACGTCc Ube3b mmu-miR-705 947 965 ACGGGUGGGGUGGAGGGUGG | |::::|:| ||||||||| TTCTTGTCTC-CCTCCCACC Ube3b mmu-miR-705 920 938 acgGGUGGGGUGGAGGGUGG ||| |::::||||::|| tagCCA-CTTGTCTCCTGCC Ube3b mmu-miR-706 405 426 aaaaaacUCUGUCCCAAAGAGa || |||||| |||| tgagcacAGTCAGGGTCTCTCc Ube3b mmu-miR-709 922 941 aGGAGGACGGA-GACGGAGg || |:||:|| ||||||| gCCACTTGTCTCCTGCCTCa Ube3b mmu-miR-709 326 344 aggaggaCGGAGACGGAGg |:| ||||||| cagcaaaGTCCCTGCCTCt Ube3b mmu-miR-710 1442 1465 gagUUGAGAG--GGGUUCUGAACc ||||| : |:|||||||| ggtAACTCGTGGACTAAGACTTGt Ube3b mmu-miR-712* 1133 1165 gUUGUGGGCCC---------CCACUGAG--CGu |:| ||:||| ||||:||| || aAGCCCCTGGGGTTCTGGAAGGTGGCTCCAGCt Ube3b mmu-miR-713 512 532 cGAC---ACACGGAAGUCACgu ||| |||| | |||||| cCTGGCCTGTG-CATCAGTGtc Ube3b mmu-miR-714 715 734 CGCUGGCUGGCCGGGAGCagc || ||:||| |||||| | GC-ACTGACAGGCCCTGGgag Ube3b mmu-miR-715 1265 1294 GUGCGCCC-------CCACA--CGUGCCUc ||| |||| | ||| |||| || CACACGGGAGAGTTAGTTGTAAGCACCGAt Ube3b mmu-miR-721 703 720 aAGG-GGGAAAAUUAACGUGAC ||| :|||| |||||||| gTCCGTCCTT----TTGCACTG Ube3b mmu-miR-744 485 518 CGACAAUC----GGGA-------UCGGGG--CGu ||||| || |||| |||||| || GCTGTCAGGGAACCCTTGCTGTCAGCCCCTGGCc Ube3b mmu-miR-761 485 506 acACAGUCAAAGUGGGACGACg |||||| ||:||||| gcTGTCAGGGAACCCTTGCTGt Ube3b mmu-miR-762 963 987 cGAGAC-AGGGC--CGGGGUCGGGG | ||| | | |:||::||||| aCCCTGATGGAGGAGTCCTGGCCCC Ube3b mmu-miR-762 994 1012 cGAGACAGGGCCGGGGUCGGgg ||| || || |||||: aCTCCGT---GGAGCCAGCTta Ube3b mmu-miR-763 516 540 CGGUGACCAAG--A-AGGGUCGAcc ||| || || | |||:|||| GCCTGTGCATCAGTGTCCTAGCTtg Ube3b mmu-miR-764-5p 395 412 uCCUCCUGUACACUCGUGg ||||| || ||||||| gGGAGGCCA-CTGAGCACa Ube3b mmu-miR-764-5p 246 277 UCCUCCUGU-------------ACACUCGUGG ||||||||| ||||||| || AGGAGGACACAAGGCCTGTGCCTGTGAGCTCC Ube3b mmu-miR-770-3p 1160 1180 GGUCGAGGUGCAGUCCGGGUGc ||||||:|||||| ||| || CCAGCTTCACGTC-TGCCAACc Ube3b mmu-miR-7b 407 427 UUGUUUUAGUGUUCAGA-AGGu |:|| |:||| ::|||| ||| AGCACAGTCA-GGGTCTCTCCt Ube3b mmu-miR-801 307 333 cAGC--UAAGGCG-UGCGUGUCGUUag ||| | || | |:||||||||| cTCGCCAAGCCTCTATGCACAGCAAag Ube3b mmu-miR-93 664 686 GAUGGACGUGCUUGUCGUGAAAc | | | || :|::|||:||||| CCAGCCGCCTGGGCAGTACTTTa Ube3b mmu-miR-96 902 927 uCG--UUUUUACACGAUCA-CGGUuu || |: || ||||||| |||| gGCTTAGTAACCTGCTAGTAGCCAct Ube3b mmu-miR-98 915 941 uugUUAU-GUUGAAU----GAUGGAGU |:|| | ||||: ||:||||| gctAGTAGCCACTTGTCTCCTGCCTCA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ube3b RAID00035261 mmu-miR-153-3p miRNA MIMAT0000163 Ube3b mRNA 117146 Prediction 0.2202 Ube3b RAID00096244 mmu-miR-3113-3p miRNA MIMAT0014960 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID00211313 mmu-miR-19b-3p miRNA MIMAT0000513 Ube3b mRNA 117146 NGS (Next Generation Sequencing) 0.5483 Ube3b RAID00224520 mmu-miR-346-5p miRNA MIMAT0000597 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID00285893 mmu-miR-148a-3p miRNA MIMAT0000516 Ube3b mRNA 117146 Prediction 0.2202 Ube3b RAID00381913 mmu-miR-503-5p miRNA MIMAT0003188 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID00579966 mmu-miR-6918-5p miRNA MIMAT0027736 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID00702449 mmu-miR-1231-5p miRNA MIMAT0022357 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID00811537 mmu-miR-184-3p miRNA MIMAT0000213 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID01196708 mmu-miR-7231-5p miRNA MIMAT0028430 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID01261145 mmu-miR-709 miRNA MIMAT0003499 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID01339139 mmu-miR-6914-5p miRNA MIMAT0027728 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID01413378 mmu-miR-665-3p miRNA MIMAT0003733 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID01575761 mmu-miR-26b-5p miRNA MIMAT0000534 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID01654149 mmu-miR-148b-3p miRNA MIMAT0000580 Ube3b mRNA 117146 Prediction 0.2202 Ube3b RAID01657311 mmu-miR-5114 miRNA MIMAT0020622 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID01712260 mmu-miR-6991-3p miRNA MIMAT0027885 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID01728506 mmu-miR-7094b-2-5p miRNA MIMAT0028096 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID01863378 mmu-miR-301b-3p miRNA MIMAT0004186 Ube3b mRNA 117146 NGS (Next Generation Sequencing)//Prediction 0.6308 Ube3b RAID01897851 mmu-miR-5107-5p miRNA MIMAT0020615 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID01939214 mmu-miR-301a-3p miRNA MIMAT0000379 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID02169829 mmu-miR-152-3p miRNA MIMAT0000162 Ube3b mRNA 117146 Prediction 0.2381 Ube3b RAID02297102 mmu-miR-7015-5p miRNA MIMAT0027934 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID02319895 mmu-miR-9769-3p miRNA MIMAT0036462 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID02400947 mmu-miR-509-5p miRNA MIMAT0004890 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID02624788 mmu-miR-6905-5p miRNA MIMAT0027710 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID02754984 mmu-miR-223-3p miRNA MIMAT0000665 Ube3b mRNA 117146 NGS (Next Generation Sequencing) 0.5483 Ube3b RAID03240557 mmu-miR-3092-3p miRNA MIMAT0014906 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID03474141 mmu-miR-6379 miRNA MIMAT0025125 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID03553618 mmu-miR-31-5p miRNA MIMAT0000538 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID03641358 mmu-miR-324-5p miRNA MIMAT0000555 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID03678983 mmu-miR-295-3p miRNA MIMAT0000373 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID03697784 mmu-miR-26a-5p miRNA MIMAT0000533 Ube3b mRNA 117146 Prediction 0.1828 Ube3b RAID04040755 mmu-miR-130a-3p miRNA MIMAT0000141 Ube3b mRNA 117146 Prediction 0.1828