DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Herc3; mCG_123509 ATTTA 102-3254 3571-3575;3970-3974;4333-4337;4488-4492;4492-4496;4636-4640

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT011846 mmu-miR-15a-5p Mus musculus Herc3 73998 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT009374 mmu-miR-7b-5p Mus musculus Herc3 73998 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT589857 mmu-miR-1196-5p Mus musculus Herc3 73998 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004521 mmu-miR-15b* 73998 Herc3 aucucGUCG-UUUAUUAC-UAAGc |||: |:: |||| |||| ccgcuCAGUGAGGAAAUGAAUUCa 2 18 181 204 [mm9:6:58853503-58853526:+] 0.5316 120 0 -9.94 -0.4709 MIMAT0004529 mmu-miR-125b* 73998 Herc3 ucCAGGGUUCU-UGGACUGAACa ||||| | | : ||||||| caGUCCCUACAGGGGUGACUUGa 2 21 411 433 [mm9:6:58869326-58869348:+] 0.5903 155 7 -21.79 -0.1329 MIMAT0004529 mmu-miR-125b* 73998 Herc3 uccaggGUUCUUGGACUGAACa :::||| : |||||| uugguaUGGGAAGUGGACUUGa 2 17 219 240 [mm9:6:58869134-58869155:+] 0.5262 124 6 -16.97 -0.1125 MIMAT0004533 mmu-miR-141* 73998 Herc3 agguugugacgugacCUUCUAc |||||| uaacugugaaaauauGAAGAUa 2 8 1014 1035 [mm9:6:58869929-58869950:+] 0.5811 120 6 -8.62 -0.1016 MIMAT0004539 mmu-miR-183* 73998 Herc3 aauaccgggaagccAUUAAGUg ||||||| aucuguuacaguuaUAAUUCAc 2 9 551 572 [mm9:6:58853873-58853894:+] 0.5250 140 7 -8.82 -0.7093 MIMAT0004541 mmu-miR-188-3p 73998 Herc3 acGUUUGGGACGUACACCCUc ::|::|:| ||||||| cuUGAGUCUU---UGUGGGAa 2 20 567 584 [mm9:6:58869482-58869499:+] 0.5470 143 7 -14.28 -0.8071 MIMAT0004544 mmu-miR-193* 73998 Herc3 aguagaacgGGCGUUUCUGGgu |: : |||||| uuugucaaaCUAUUAAGACCau 3 14 511 532 [mm9:6:58853833-58853854:+] 0.5178 121 0 -13.22 -0.1033 MIMAT0000376 mmu-miR-298 73998 Herc3 cccuucuugucgggaGGAGACGg ||||||| uuaauuuuauguaaaCCUCUGCc 2 9 434 456 [mm9:6:58853756-58853778:+] 0.4856 140 7 -21.48 -1.1307 MIMAT0000376 mmu-miR-298 73998 Herc3 cccuucuugucgggaGGAGACGg ||||||: aaguuuuuuuuuaaaCCUCUGUc 2 9 989 1011 [mm9:6:58869904-58869926:+] 0.5811 124 0 -19.19 -0.1300 MIMAT0000376 mmu-miR-298 73998 Herc3 cccuucuugucGGGAGGAG-ACGg ||:||||| ||| ccccucuccucCCUUCCUCUUGCu 2 13 874 897 [mm9:6:58869789-58869812:+] 0.5811 120 0 -18.83 -0.2684 MIMAT0000377 mmu-miR-299* 73998 Herc3 uacauacacccugcCAUUUGGu ||||||| uauuuuaauuuuauGUAAACCu 2 9 430 451 [mm9:6:58853752-58853773:+] 0.4856 140 7 -7.63 -1.1019 MIMAT0004578 mmu-miR-300* 73998 Herc3 uguuuccUAUUGGAGAGAAGUu ||: :|:|||||| auauuuuAUGUAUUUUCUUCAu 2 16 705 726 [mm9:6:58854027-58854048:+] 0.5287 135 6 -9.71 -0.1827 MIMAT0000378 mmu-miR-300 73998 Herc3 cuUCUCUCGAACGGGAAC-GUAu ||| |||| ||||| ||| aaAGA-AGCUGAGCCUUGUCAUa 2 21 542 563 [mm9:6:58869457-58869478:+] 0.5470 126 0 -18.92 -0.2055 MIMAT0004579 mmu-miR-302a* 73998 Herc3 cguucauguugguGCAAAUUCa :||||||| ucuauuuuuuuauUGUUUAAGu 2 10 85 106 [mm9:6:58869000-58869021:+] 0.6350 141 7 -8.68 -1.1368 MIMAT0004620 mmu-let-7a* 73998 Herc3 ccUUUCUGUCAUCUAACAUAUc |||||:| ||| |||| aaAAAGAUACACAAUUAUAUAa 2 21 1387 1408 [mm9:6:58870302-58870323:+] 0.6416 132 0 -5.55 -0.1080 MIMAT0005439 mmu-let-7c-2* 73998 Herc3 ccUUUCUGUCAUCUAACAUAUc |||||:| ||| |||| aaAAAGAUACACAAUUAUAUAa 2 21 1387 1408 [mm9:6:58870302-58870323:+] 0.6416 132 0 -5.55 -0.1080 MIMAT0004623 mmu-let-7f* 73998 Herc3 cccUUCCGU-UAUCUAACAUAUc ||| :| | | ||| |||| aaaAAGAUACACA-AUUAUAUAa 2 20 1387 1408 [mm9:6:58870302-58870323:+] 0.6416 120 0 -0.82 -0.1101 MIMAT0004624 mmu-miR-15a* 73998 Herc3 acUCCGUCGUGUCAU-ACCGGAc | ||||:|: || |||||| ccAAGCAGUAUUUUACUGGCCUg 2 21 76 98 [mm9:6:58853398-58853420:+] 0.5246 132 6 -23.74 -0.4044 MIMAT0004630 mmu-miR-26b* 73998 Herc3 cucGGU-UCAUUACCUCUUGUCc ||| | |: ||||||| uuuCCAUAUUGCCUAAGAACAGu 2 20 778 800 [mm9:6:58869693-58869715:+] 0.5811 142 7 -11.45 -0.9242 MIMAT0004631 mmu-miR-29a* 73998 Herc3 gacuuguGGUUUUCUUUAGUCa |::||| ||||||| agucuuuCUGAAA-AAAUCAGu 2 16 167 187 [mm9:6:58869082-58869102:+] 0.5836 153 7 -11.83 -0.6815 MIMAT0004636 mmu-miR-93* 73998 Herc3 gcccuucacgaucgAGUCGUCa ||||||| gcuuuuggaaauaaUCAGCAGg 2 9 380 401 [mm9:6:58853702-58853723:+] 0.5120 140 7 -13.41 -0.4536 MIMAT0004636 mmu-miR-93* 73998 Herc3 gcccuUCACGAUCGAGUCGUCa |||| | :||||||| uuuacAGUGAAAUUUCAGCAGg 2 18 1080 1101 [mm9:6:58869995-58870016:+] 0.5811 157 7 -17.76 -0.7370 MIMAT0000549 mmu-miR-322* 73998 Herc3 cacaacgucgcGAAGUACAaa :||||||| acgguacuaauUUUCAUGUga 3 11 490 510 [mm9:6:58853812-58853832:+] 0.5081 126 0 -9.59 -0.2362 MIMAT0000549 mmu-miR-322* 73998 Herc3 caCAACGUCGCGAAGUACAaa || || | ||||||| ugGUCAAAGAG-UUCAUGUaa 3 20 1180 1199 [mm9:6:58870095-58870114:+] 0.5811 129 0 -9.31 -0.1198 MIMAT0004640 mmu-miR-325 73998 Herc3 aacuauccuccaCGAGUUAUuu |:|||||| ugucugcauauaGUUCAAUAuu 3 11 1426 1447 [mm9:6:58870341-58870362:+] 0.7216 126 0 -7.61 -0.1183 MIMAT0004640 mmu-miR-325 73998 Herc3 aacuauccuccacgaGUUAUUu |||||| uaguucaauauuaucCAAUAAa 2 8 1436 1457 [mm9:6:58870351-58870372:+] 0.7216 120 6 -6.93 -0.3988 MIMAT0000569 mmu-miR-330* 73998 Herc3 agAGACGUCCGGGACACGAAACg ||| || || ||||||| uuUCUUCA---CC-AUGCUUUGc 2 22 373 391 [mm9:6:58869288-58869306:+] 0.5903 143 7 -16.67 -0.3292 MIMAT0004643 mmu-miR-331-5p 73998 Herc3 ccuagggacccugguAUGGAUc |||||| ---gguaccccagcuUACCUAa 2 8 1 19 [mm9:6:58868916-58868934:+] 0.6708 120 6 -12.36 -0.1535 MIMAT0004647 mmu-miR-338-5p 73998 Herc3 gugagucgugguccuAUAACAa |||||| ugauuucuauuuuuuUAUUGUu 2 8 80 101 [mm9:6:58868995-58869016:+] 0.6350 120 6 -6.18 -0.1000 MIMAT0004656 mmu-miR-345-3p 73998 Herc3 cagaggucUGGGGAUCAAGUcc :| : ||||||| augugucuGCAUAUAGUUCAau 3 15 1423 1444 [mm9:6:58870338-58870359:+] 0.7216 126 0 -12.73 -0.1758 MIMAT0004663 mmu-miR-200c* 73998 Herc3 gguuugugacgacccAUUCUGc |||||| gauuugucaaacuauUAAGACc 2 8 509 530 [mm9:6:58853831-58853852:+] 0.5178 120 6 -8.04 -0.1402 MIMAT0004663 mmu-miR-200c* 73998 Herc3 gguuugugacgacccAUUCUGc |||||| guaccccagcuuaccUAAGACa 2 8 2 23 [mm9:6:58868917-58868938:+] 0.6708 120 6 -8.22 -0.1311 MIMAT0004666 mmu-miR-33* 73998 Herc3 cacuacgugacaccUUUGUAAc ||||||| uucaccuccauccuAAACAUUc 2 9 201 222 [mm9:6:58853523-58853544:+] 0.5131 140 7 -4.37 -0.6111 MIMAT0004666 mmu-miR-33* 73998 Herc3 cacuacgugacaccuUUGUAAc |||||| uguccuuauaaauauAACAUUu 2 8 1364 1385 [mm9:6:58870279-58870300:+] 0.6416 120 6 -2.85 -0.3373 MIMAT0004670 mmu-miR-7a* 73998 Herc3 auacCGUCUGACACU-AAACAAc |::|||| ||| |||||| ggaaGUGGACU-UGAUUUUGUUu 2 19 227 248 [mm9:6:58869142-58869163:+] 0.5262 132 6 -13.16 -0.5640 MIMAT0004691 mmu-miR-382* 73998 Herc3 uuuuucacaacAGGCACUUACu ||:||||||| uuguuccuucaUCUGUGAAUGu 2 12 280 301 [mm9:6:58869195-58869216:+] 0.5903 151 7 -14.92 -0.6436 MIMAT0001090 mmu-miR-409-3p 73998 Herc3 uccccaaguggcucGUUGUAAg :|||||| uguccuuauaaauaUAACAUUu 2 9 1364 1385 [mm9:6:58870279-58870300:+] 0.6416 124 6 -6.36 -0.3373 MIMAT0003388 mmu-miR-376b* 73998 Herc3 auuggUA-UCUUCCUUAU-AGGUg || || : ||||| |||| uugaaAUGAGUGUGAAUACUCCAa 2 18 588 611 [mm9:6:58853910-58853933:+] 0.5250 120 0 -9.52 -1.0949 MIMAT0003388 mmu-miR-376b* 73998 Herc3 auugguaucuuccuuAUAGGUg |||||| cauauaguucaauauUAUCCAa 2 8 1432 1453 [mm9:6:58870347-58870368:+] 0.7216 120 6 -10.89 -0.3096 MIMAT0001422 mmu-miR-434-3p 73998 Herc3 uccUCAGCU-CACUA-----CCAAGUUu |||| | ||| | ||||||| ccuAGUCAAGGUGUUUCUGGGGUUCAAu 2 20 132 159 [mm9:6:58869047-58869074:+] 0.5836 145 7 -16.09 -0.3221 MIMAT0001422 mmu-miR-434-3p 73998 Herc3 ucCUCAGCUCACUACCAAGUUu | ||| : || |||||| auGUGUCUGCAUAUAGUUCAAu 2 21 1423 1444 [mm9:6:58870338-58870359:+] 0.7216 124 6 -6.87 -0.2120 MIMAT0002104 mmu-miR-463* 73998 Herc3 uacuaccuGUUGUUUAAUCCAu |||:||||| ||| auauuaucCAAUAAAUUUGGUg 2 15 1443 1464 [mm9:6:58870358-58870379:+] 0.7216 134 0 -12.65 -0.1350 MIMAT0002105 mmu-miR-464 73998 Herc3 auAGAGUGUCUUAUUUGAACCAu | |:|: ||||||:||||| aaUAUUAUCCAAUAAAUUUGGUg 2 22 1442 1464 [mm9:6:58870357-58870379:+] 0.7216 157 0 -16.02 -0.1112 MIMAT0002106 mmu-miR-465a-5p 73998 Herc3 agUGUAGUCACGGUAA-GAUUUAu | :|:| | | ||| |||||| aaAAGUUACUCCAAUUGCUAAAUu 2 22 1329 1352 [mm9:6:58870244-58870267:+] 0.6113 129 6 -8.36 -0.8697 MIMAT0004217 mmu-miR-465a-3p 73998 Herc3 agauGAAUCUUUCCGGGACUAg | || || :|||||| ccauCCUA-AACAUUCCUGAUa 2 19 208 228 [mm9:6:58853530-58853550:+] 0.5039 128 6 -9.42 -0.1074 MIMAT0004759 mmu-miR-466a-5p 73998 Herc3 auacauGUACAUGUGUGUGUAu | || | |||||||| gggccuCCUG-AAACACACAUa 2 17 638 658 [mm9:6:58869553-58869573:+] 0.5236 150 7 -13.07 -0.6212 MIMAT0002107 mmu-miR-466a-3p 73998 Herc3 agaauacacacgcACAUACAUAu | ||||||| aauugauaaauauUUUAUGUAUu 2 11 696 718 [mm9:6:58854018-58854040:+] 0.5287 142 7 -4.89 -1.2174 MIMAT0003409 mmu-miR-467a 73998 Herc3 gcguAUAUGU--ACGUC-CGUGAAu |:|:|| ||::| |||||| uuacUGUGCAGCUGUGGCGCACUUu 2 19 122 146 [mm9:6:58853444-58853468:+] 0.5373 125 6 -16.50 -0.2862 MIMAT0002108 mmu-miR-467a-1* 73998 Herc3 cacauccAC-ACACAUACAUAUa || | || ||||||| acauuccUGAUAUGCAUGUAUAu 2 16 217 239 [mm9:6:58853539-58853561:+] 0.5039 150 7 -8.03 -0.4010 MIMAT0002108 mmu-miR-467a-1* 73998 Herc3 cacAUCCACACACAUACAUAua || | | | ||||||| ugaUAAAUAU-UUUAUGUAUuu 3 20 699 719 [mm9:6:58854021-58854041:+] 0.5287 129 0 -4.69 -0.1096 MIMAT0003120 mmu-miR-483* 73998 Herc3 uucUGCCCUCCCCUCCUC-ACu || || ||||||| || uuuACUGGCCUGGAGGAGAUGg 2 19 87 108 [mm9:6:58853409-58853430:+] 0.5246 122 0 -18.73 -0.1209 MIMAT0005295 mmu-miR-376c* 73998 Herc3 auUUGUA-UCUUCCUUAU-AGGUg :| || || : ||||| |||| uuGAAAUGAGUGUGAAUACUCCAa 2 21 588 611 [mm9:6:58853910-58853933:+] 0.5250 123 0 -10.67 -1.0949 MIMAT0005295 mmu-miR-376c* 73998 Herc3 auuUGUAUC--UUCCUUAUAGGUg |:|||| | | |||||| ugcAUAUAGUUCAAUAUUAUCCAa 2 20 1430 1453 [mm9:6:58870345-58870368:+] 0.7216 122 6 -11.50 -0.3096 MIMAT0003186 mmu-miR-369-3p 73998 Herc3 uuUCUAGUUGGUACAU-AAUAa |||| :| | ||| |||| guAGAUAGAGAAAGUAUUUAUu 2 20 1219 1240 [mm9:6:58870134-58870155:+] 0.5811 123 0 -5.90 -0.9402 MIMAT0003186 mmu-miR-369-3p 73998 Herc3 uuucuaguugguacAUAAUAa |||||| ugcauauaguucaaUAUUAUc 2 8 1430 1450 [mm9:6:58870345-58870365:+] 0.7216 120 6 -3.53 -0.1444 MIMAT0004187 mmu-miR-744 73998 Herc3 acgacaAUCGGGAUCGGGGCGu | ||| |||||||| ccggccUUGCCAGAGCCCCGCu 2 17 311 332 [mm9:6:58853633-58853654:+] 0.5120 156 7 -27.07 -0.6658 MIMAT0003728 mmu-miR-374* 73998 Herc3 gagccuguuACUA-UUAUGUUGg | || ||||:||| uuuuuguccUUAUAAAUAUAACa 2 14 1360 1382 [mm9:6:58870275-58870297:+] 0.6416 132 0 -6.77 -0.1540 MIMAT0004821 mmu-miR-671-3p 73998 Herc3 ccaccUCGGG-ACUCU-UGGCCu |||:| |||| ||||| uacacAGCUCAGGAGACACCGGu 2 17 151 173 [mm9:6:58853473-58853495:+] 0.5501 123 0 -21.83 -0.2493 MIMAT0003892 mmu-miR-762 73998 Herc3 cgaGACAGGGCCGGGGUCGGGg :|||: | | |||||||| ggcUUGUUGCAG-CCCAGCCCa 2 20 497 517 [mm9:6:58869412-58869432:+] 0.5579 157 7 -26.64 -0.1624 MIMAT0015219 mmu-miR-3475 73998 Herc3 aaGUUUGGUACACGGA-GGUCu :||| :| |||||| |||| uaUAAAAUA-GUGCCUGCCAGc 2 20 261 281 [mm9:6:58853583-58853603:+] 0.5120 129 0 -18.82 -0.2789 MIMAT0004188 mmu-miR-802 73998 Herc3 uuccuacuuagaaaCAAUGAcu |||||| uuuuguuuugaaaaGUUACUcc 3 9 1319 1340 [mm9:6:58870234-58870255:+] 0.5811 120 0 -6.73 -0.1038 MIMAT0003736 mmu-miR-670 73998 Herc3 aaguGGUGUAUGU---GAGUCC-CUa :|| ||||| |||||| || acuuUCAAAUACACAGCUCAGGAGAc 2 19 142 167 [mm9:6:58853464-58853489:+] 0.5501 125 0 -18.33 -0.1599 MIMAT0003895 mmu-miR-764-3p 73998 Herc3 ugUCAACGGUGAU--A-CCGGAGGa ||| |:|||: | ||||||| ugAGUGCCUACUGCCUGGGCCUCCu 2 21 622 646 [mm9:6:58869537-58869561:+] 0.5353 154 7 -28.23 -0.1164 MIMAT0014815 mmu-miR-3099* 73998 Herc3 guucccgaccUUCCUUCGACc || ||||||| cucccaagacAAAGAAGCUGa 2 12 532 552 [mm9:6:58869447-58869467:+] 0.5470 147 7 -11.02 -0.6102 MIMAT0003477 mmu-miR-669a 73998 Herc3 uguACUUGUACGUGUGUGUUGa | || | | |:||||||: auuUAAAAAAG-AUACACAAUu 2 20 1382 1402 [mm9:6:58870297-58870317:+] 0.6416 137 0 -12.49 -0.3007 MIMAT0003737 mmu-miR-666-5p 73998 Herc3 ccgAGAGUGUCGACACGGGCGa | || | || ||||||| auaUGUCCCUUCU-UGCCCGCc 2 20 437 457 [mm9:6:58869352-58869372:+] 0.5795 149 7 -16.38 -0.3897 MIMAT0003739 mmu-miR-673-5p 73998 Herc3 gaGGUUCCUGGUCUCGACACUc |||: | || |||||||| agCCAGAGCACAUAGCUGUGAu 2 21 279 300 [mm9:6:58853601-58853622:+] 0.5120 164 7 -20.07 -0.4654 MIMAT0003739 mmu-miR-673-5p 73998 Herc3 gagguuccuggucucGACACUc |||||| aaccucugucucuaaCUGUGAa 2 8 1002 1023 [mm9:6:58869917-58869938:+] 0.5811 120 6 -11.31 -0.1848 MIMAT0003740 mmu-miR-674 73998 Herc3 auGUGGUGAGG--GUA---GAGUCACg ||||: ||: || ||||||| gaCACCGGUCUAGGAUCCGCUCAGUGa 2 21 165 191 [mm9:6:58853487-58853513:+] 0.5501 146 7 -27.00 -0.2537 MIMAT0003474 mmu-miR-694 73998 Herc3 gaaguCCGUUG-UAAAAGUc ||:| : ||||||| aaaacGGUACUAAUUUUCAu 2 15 487 506 [mm9:6:58853809-58853828:+] 0.5081 145 7 -9.24 -0.7926 MIMAT0003474 mmu-miR-694 73998 Herc3 gaAGUCCGUU---GUAAAAGUc || | ||: :||||||| ccUCUGCCAGUUUUAUUUUCAu 2 18 449 470 [mm9:6:58853771-58853792:+] 0.4957 144 7 -9.05 -1.1525 MIMAT0003474 mmu-miR-694 73998 Herc3 gaaguccguuGUAAAAGuc :|||||| auaaaauguuUAUUUUCua 3 10 1405 1423 [mm9:6:58870320-58870338:+] 0.6816 121 0 -3.39 -0.1551 MIMAT0003478 mmu-miR-467b* 73998 Herc3 cacAACCAC-ACACAUACAUAUa || || | || ||||||| acaUUCCUGAUAUGCAUGUAUAu 2 20 217 239 [mm9:6:58853539-58853561:+] 0.5039 154 7 -8.03 -0.4010 MIMAT0003478 mmu-miR-467b* 73998 Herc3 cacaaccacacACAUACAUAua | ||||||| uugauaaauauUUUAUGUAUuu 3 12 698 719 [mm9:6:58854020-58854041:+] 0.5287 127 0 -4.69 -0.1096 MIMAT0004827 mmu-miR-297b-3p 73998 Herc3 auacccaUACACACAUACAUAu || | | ||||||| uugauaaAUAU-UUUAUGUAUu 2 16 698 718 [mm9:6:58854020-58854040:+] 0.5287 145 7 -4.89 -1.2130 MIMAT0003493 mmu-miR-703 73998 Herc3 aagaaaggaagACUUCCAAAa | ||||||| aguacaauuaaUAAAGGUUUc 2 11 798 818 [mm9:6:58869713-58869733:+] 0.5811 142 7 -6.27 -0.6940 MIMAT0003494 mmu-miR-704 73998 Herc3 gauccucgucuCGUGUACAGa | ||||||| ggaaccuuuauGAACAUGUCc 2 11 581 601 [mm9:6:58869496-58869516:+] 0.5470 142 7 -9.91 -0.3258 MIMAT0003500 mmu-miR-710 73998 Herc3 gaguugagagggguUCUGAACc :|||||| uugguaugggaaguGGACUUGa 2 9 219 240 [mm9:6:58869134-58869155:+] 0.5262 124 6 -7.42 -0.1125 MIMAT0003502 mmu-miR-712 73998 Herc3 ccaUGG--CGGGCCCACUUCCUc ||| |:|: | ||||||| agcACCGAGUCUUGAUGAAGGAa 2 19 1274 1296 [mm9:6:58870189-58870211:+] 0.5811 153 7 -17.95 -0.8904 MIMAT0003510 mmu-miR-717 73998 Herc3 ucucuuccAUAGAG-ACAGACuc | | || |||||| ucuaauuuUUUGUCAUGUCUGuu 3 15 624 646 [mm9:6:58853946-58853968:+] 0.5250 125 0 -10.62 -0.1072 MIMAT0003510 mmu-miR-717 73998 Herc3 ucucuuccAUAGAGACAGACuc | | | |||||| guuuauuuUCUAUGUGUCUGca 3 15 1412 1433 [mm9:6:58870327-58870348:+] 0.7216 126 0 -10.01 -0.2307 MIMAT0004838 mmu-miR-742* 73998 Herc3 acuAAUCGUUGGUACAC-UCAu ||| || |||||| ||| guuUUAUCA--CAUGUGAAGUg 2 19 1056 1075 [mm9:6:58869971-58869990:+] 0.5811 123 0 -12.65 -0.6691 MIMAT0004237 mmu-miR-742 73998 Herc3 aaaugggucguaccACCGAAAg ||||||| gccaaaaaaaaaauUGGCUUUg 2 9 200 221 [mm9:6:58869115-58869136:+] 0.5262 140 7 -9.06 -0.5529 MIMAT0004238 mmu-miR-743a 73998 Herc3 agaugaguCGAACCACAGAAAg || || ||||||| uaguggauGCAUGCUGUCUUUu 2 15 951 972 [mm9:6:58869866-58869887:+] 0.5811 154 7 -10.59 -0.7282 MIMAT0004238 mmu-miR-743a 73998 Herc3 agAUGAGUCGAACCACAGAAAg ||||| | | ||||||| ccUACUCUUCCU--UGUCUUUg 2 21 900 919 [mm9:6:58869815-58869834:+] 0.5811 153 7 -15.10 -0.2376 MIMAT0004840 mmu-miR-743b-3p 73998 Herc3 agauaaguCGUACUACAGAAAg ||||| ||||||| uaguggauGCAUGCUGUCUUUu 2 15 951 972 [mm9:6:58869866-58869887:+] 0.5811 162 7 -15.74 -0.7245 MIMAT0004840 mmu-miR-743b-3p 73998 Herc3 agAUAAGUCGUACUACAGAAAg || || | | ||||||| ccUACUCUUCCU--UGUCUUUg 2 21 900 919 [mm9:6:58869815-58869834:+] 0.5811 145 7 -8.61 -0.2376 MIMAT0004846 mmu-miR-881 73998 Herc3 agaUAAGUCUUUUC--UGUGUCAa |||:| ||||| ||||| | aacAUUUAAAAAAGAUACACAAUu 2 20 1379 1402 [mm9:6:58870294-58870317:+] 0.6416 138 0 -12.59 -0.1283 MIMAT0004848 mmu-miR-883a-5p 73998 Herc3 caUUGACGAUGAAGA-GAGUCGu ||| :| || || |||||| agAACAUUUCCUACUCCUCAGCa 2 21 462 484 [mm9:6:58869377-58869399:+] 0.5688 128 6 -18.34 -0.4318 MIMAT0004856 mmu-miR-105 73998 Herc3 ugGUGUUCGUAGACUCGUGAACc :|:|| || |||||||| guUAUAA--UUCACAGCACUUGu 2 22 561 581 [mm9:6:58853883-58853903:+] 0.5250 150 7 -14.02 -0.8697 MIMAT0004864 mmu-miR-297a* 73998 Herc3 auacccaUACACACAUACAUAu || | | ||||||| uugauaaAUAU-UUUAUGUAUu 2 16 698 718 [mm9:6:58854020-58854040:+] 0.5287 145 7 -4.89 -1.2130 MIMAT0004866 mmu-miR-297c* 73998 Herc3 auacccaUACACACAUACAUAu || | | ||||||| uugauaaAUAU-UUUAUGUAUu 2 16 698 718 [mm9:6:58854020-58854040:+] 0.5287 145 7 -4.89 -1.2130 MIMAT0004871 mmu-miR-465b-5p 73998 Herc3 gucUAGUCGUGGUAA-GAUUUAu :|:| : | ||| |||||| aaaGUUACUCCAAUUGCUAAAUu 2 20 1330 1352 [mm9:6:58870245-58870267:+] 0.6113 123 6 -8.84 -0.8697 MIMAT0004872 mmu-miR-465b-3p 73998 Herc3 agauGAAUCUUUCCGGGACUAg | || || :|||||| ccauCCUA-AACAUUCCUGAUa 2 19 208 228 [mm9:6:58853530-58853550:+] 0.5039 128 6 -9.42 -0.1074 MIMAT0004873 mmu-miR-465c-5p 73998 Herc3 gucUAGUCGCGGUAA-GAUUUAu :|:| : | ||| |||||| aaaGUUACUCCAAUUGCUAAAUu 2 20 1330 1352 [mm9:6:58870245-58870267:+] 0.6113 123 6 -8.55 -0.8766 MIMAT0004874 mmu-miR-465c-3p 73998 Herc3 agauGAAUCUUUCCGGGACUAg | || || :|||||| ccauCCUA-AACAUUCCUGAUa 2 19 208 228 [mm9:6:58853530-58853550:+] 0.5039 128 6 -9.42 -0.1074 MIMAT0004875 mmu-miR-466b-5p 73998 Herc3 guacauGUACAUGUGUGUGUAg | || | |||||||| gggccuCCUG-AAACACACAUa 2 17 638 658 [mm9:6:58869553-58869573:+] 0.5236 150 7 -13.51 -0.6212 MIMAT0004876 mmu-miR-466b-3p 73998 Herc3 agaauacacacgcACAUACAUAu | ||||||| aauugauaaauauUUUAUGUAUu 2 11 696 718 [mm9:6:58854018-58854040:+] 0.5287 142 7 -4.89 -1.2174 MIMAT0005453 mmu-miR-466b-3-3p 73998 Herc3 agaauacacacgcACAUACAUAa | ||||||| aauugauaaauauUUUAUGUAUu 2 11 696 718 [mm9:6:58854018-58854040:+] 0.5287 142 7 -5.62 -1.2174 MIMAT0004877 mmu-miR-466c-5p 73998 Herc3 auACAUGUACG--UGUGUGUGUAg || :| | | | |||||||| ccUGGGCCUCCUGAAACACACAUa 2 21 635 658 [mm9:6:58869550-58869573:+] 0.5236 151 7 -13.62 -0.6212 MIMAT0004878 mmu-miR-466c-3p 73998 Herc3 agaauacacacgcACAUACAUAu | ||||||| aauugauaaauauUUUAUGUAUu 2 11 696 718 [mm9:6:58854018-58854040:+] 0.5287 142 7 -4.89 -1.2174 MIMAT0004879 mmu-miR-466e-5p 73998 Herc3 auacauGUACAUGUGUGUGUAg | || | |||||||| gggccuCCUG-AAACACACAUa 2 17 638 658 [mm9:6:58869553-58869573:+] 0.5236 150 7 -12.06 -0.6212 MIMAT0004880 mmu-miR-466e-3p 73998 Herc3 agaauacacacgcACAUACAUAu | ||||||| aauugauaaauauUUUAUGUAUu 2 11 696 718 [mm9:6:58854018-58854040:+] 0.5287 142 7 -4.89 -1.2174 MIMAT0004883 mmu-miR-466g 73998 Herc3 acACACACGUACACAGACAua | ||| || ||||||| uuUUUGU-CA--UGUCUGUuu 3 20 630 647 [mm9:6:58853952-58853969:+] 0.5250 130 0 -10.75 -0.1099 MIMAT0004883 mmu-miR-466g 73998 Herc3 acacacacguacacAGACAUa |||||| guucuuuauguaaaUCUGUAc 2 8 403 423 [mm9:6:58853725-58853745:+] 0.4856 120 6 -8.88 -0.1117 MIMAT0004883 mmu-miR-466g 73998 Herc3 acacacacguacacAGACAUa |||||| auucuaauuuuaaaUCUGUAg 2 8 1199 1219 [mm9:6:58870114-58870134:+] 0.5811 120 6 -5.94 -0.1761 MIMAT0004885 mmu-miR-467c 73998 Herc3 guguAUAUGU--ACG-UGCGUGAAu |:|:|| ||: :||||||| uuacUGUGCAGCUGUGGCGCACUUu 2 19 122 146 [mm9:6:58853444-58853468:+] 0.5373 152 7 -19.01 -0.2309 MIMAT0004885 mmu-miR-467c 73998 Herc3 guguAUAUGUACGUG-CGUGAAu |||| || ||| |||||| caguUAUA-AUUCACAGCACUUg 2 19 559 580 [mm9:6:58853881-58853902:+] 0.5250 132 6 -14.22 -0.7825 MIMAT0004886 mmu-miR-467d 73998 Herc3 gcguAUAUGU--ACG-CGCGUGAAu |:|:|| ||: |||||||| uuacUGUGCAGCUGUGGCGCACUUu 2 19 122 146 [mm9:6:58853444-58853468:+] 0.5373 156 7 -20.38 -0.2309 MIMAT0004886 mmu-miR-467d 73998 Herc3 gcguAUAUGUACGCG-CGUGAAu |||| || | | |||||| caguUAUA-AUUCACAGCACUUg 2 19 559 580 [mm9:6:58853881-58853902:+] 0.5250 124 6 -15.56 -0.7825 MIMAT0004887 mmu-miR-467d* 73998 Herc3 cacauccAC-ACACAUACAUAUa || | || ||||||| acauuccUGAUAUGCAUGUAUAu 2 16 217 239 [mm9:6:58853539-58853561:+] 0.5039 150 7 -8.03 -0.4010 MIMAT0004887 mmu-miR-467d* 73998 Herc3 cacAUCCACACACAUACAUAua || | | | ||||||| ugaUAAAUAU-UUUAUGUAUuu 3 20 699 719 [mm9:6:58854021-58854041:+] 0.5287 129 0 -4.69 -0.1096 MIMAT0004888 mmu-miR-493 73998 Herc3 ggaccguguGUCAUCCUGGAAGu ::||| ||||||| acagugaauUGGUA-GACCUUCu 2 15 720 741 [mm9:6:58869635-58869656:+] 0.5811 148 7 -15.50 -0.9721 MIMAT0004892 mmu-miR-568 73998 Herc3 cacacAUAUGUAAAUAUGUa || ||| |||||:| aaagaUACACAAUUAUAUAa 2 16 1389 1408 [mm9:6:58870304-58870323:+] 0.6416 143 0 -6.39 -0.1286 MIMAT0004893 mmu-miR-574-5p 73998 Herc3 ugUGUGAGUGUGUGUGUGU-GAGu :||||: || |:||||| ||| gcGCACUUUCAAAUACACAGCUCa 2 22 138 161 [mm9:6:58853460-58853483:+] 0.5501 141 0 -26.72 -0.3267 MIMAT0004897 mmu-miR-654-5p 73998 Herc3 uguguaCAAGACGUCGAAUGGu || | ||||||||| -----gGUACCCCAGCUUACCu 2 17 1 17 [mm9:6:58868916-58868932:+] 0.6708 156 7 -15.28 -1.2957 MIMAT0004931 mmu-miR-466d-3p 73998 Herc3 gauacacacgcACAUACAUAu | ||||||| uugauaaauauUUUAUGUAUu 2 11 698 718 [mm9:6:58854020-58854040:+] 0.5287 142 7 -4.89 -1.2174 MIMAT0004933 mmu-miR-878-3p 73998 Herc3 agAUGGGUCACACCACAGUACg | :|:| | | ||||||| guUUUCUAAUUUUUUGUCAUGu 2 21 620 641 [mm9:6:58853942-58853963:+] 0.5250 152 7 -11.52 -1.1279 MIMAT0004935 mmu-miR-872* 73998 Herc3 uccUCCGAUGACGU-UAUCAAGu | |: ||||| ||||||| ucuAUGUGUCUGCAUAUAGUUCa 2 20 1420 1442 [mm9:6:58870335-58870357:+] 0.7216 158 7 -17.11 -1.1970 MIMAT0004938 mmu-miR-875-3p 73998 Herc3 guaucggagucAUAAAAGUcc |||||||| ucugccaguuuUAUUUUCAuu 3 11 451 471 [mm9:6:58853773-58853793:+] 0.4957 130 0 -7.92 -0.1286 MIMAT0004938 mmu-miR-875-3p 73998 Herc3 guAUCGGAGUCAU--AAAAGUCc || : ||||| ||||||| uuUAAUGGCAGUAGGUUUUCAGc 2 20 318 340 [mm9:6:58869233-58869255:+] 0.5903 154 7 -18.04 -0.1396 MIMAT0005293 mmu-miR-467e 73998 Herc3 uguAUAUGUACGAGUGUGAAUa |||| || | |||:||| ccuUAUAAAU-AUAACAUUUAa 2 20 1367 1387 [mm9:6:58870282-58870302:+] 0.6416 141 0 -7.27 -0.1629 MIMAT0005294 mmu-miR-467e* 73998 Herc3 uaUAUCCAC-ACACAUACAUAUa || || | || ||||||| acAUUCCUGAUAUGCAUGUAUAu 2 21 217 239 [mm9:6:58853539-58853561:+] 0.5039 151 7 -8.03 -0.4010 MIMAT0005294 mmu-miR-467e* 73998 Herc3 uaUAUCCACACACAUACAUAua ||| | | | ||||||| ugAUAAAUAU-UUUAUGUAUuu 3 21 699 719 [mm9:6:58854021-58854041:+] 0.5287 134 0 -4.69 -0.1096 MIMAT0005830 mmu-miR-466l 73998 Herc3 uuauacacaCGUACAUAAAUAu |:|| ||||||| auagagaaaGUAUUUAUUUAUc 2 14 1223 1244 [mm9:6:58870138-58870159:+] 0.5811 153 7 -6.22 -1.0368 MIMAT0005831 mmu-miR-669k 73998 Herc3 aacGUACGCACAUAUACGUAu ||| | || |||||||| aaaCAUUCCUG-AUAUGCAUg 2 19 215 234 [mm9:6:58853537-58853556:+] 0.5039 160 7 -14.08 -0.7682 MIMAT0005833 mmu-miR-669d 73998 Herc3 uguaUAUGUACGUGUGUGUUCa | ||| ||:||||||| ccugAAACACACAUACACAAGa 2 19 644 665 [mm9:6:58869559-58869580:+] 0.5236 162 7 -16.93 -0.4352 MIMAT0005833 mmu-miR-669d 73998 Herc3 uguAUAUGUACGUGUGUGUUca || | | | |:|||||| auuUAAAAAAG-AUACACAAuu 3 20 1382 1402 [mm9:6:58870297-58870317:+] 0.6416 133 0 -7.95 -0.3033 MIMAT0005836 mmu-miR-1186 73998 Herc3 guacgGAAAUUAAG-GUCGUGAg :| |||||| ||||||| uacagUUAUAAUUCACAGCACUu 2 18 557 579 [mm9:6:58853879-58853901:+] 0.5250 164 7 -18.93 -0.9138 MIMAT0005836 mmu-miR-1186 73998 Herc3 guacggaaAUUAAG-GUCGUGAg || | | ||||||| acauuuccUACUCCUCAGCACUg 2 15 465 487 [mm9:6:58869380-58869402:+] 0.5688 145 7 -16.28 -0.2380 MIMAT0005837 mmu-miR-1187 73998 Herc3 aauguGUGUAUGUGUGUGUGUAu | | |: | |||||||| ugggcCUCCUG-AAACACACAUa 2 19 637 658 [mm9:6:58869552-58869573:+] 0.5236 148 7 -13.50 -0.6249 MIMAT0005839 mmu-miR-669f 73998 Herc3 uaugcacAC-ACACAUACAUAUAc || | || |||||||| acauuccUGAUAUGCAUGUAUAUa 2 17 217 240 [mm9:6:58853539-58853562:+] 0.5039 155 7 -7.34 -0.9140 MIMAT0005841 mmu-miR-669h-5p 73998 Herc3 cguGAGUUGAUAUGUG-GGUACGUa | | || |:| | ||||||| uguCCCUUCU-UGCCCGCCAUGCAg 2 22 440 463 [mm9:6:58869355-58869378:+] 0.5795 146 7 -13.09 -0.1008 MIMAT0005842 mmu-miR-669h-3p 73998 Herc3 acacGUACACACAUAUACGUAu ||| || |||||||| uaaaCAUUCCUG-AUAUGCAUg 2 19 214 234 [mm9:6:58853536-58853556:+] 0.5039 152 7 -13.08 -0.7755 MIMAT0005849 mmu-miR-1191 73998 Herc3 aucCCGAUGUAUCAUUCUGac | | | || |||||| uuuGUCAAACUAUUAAGACca 3 19 511 531 [mm9:6:58853833-58853853:+] 0.5178 130 0 -7.35 -0.2132 MIMAT0005851 mmu-miR-1193 73998 Herc3 cuaUCAUUUUGCCCA-CUGGAu ||| :||: ||| ||||| uacAGU-GAAUUGGUAGACCUu 2 19 719 739 [mm9:6:58869634-58869654:+] 0.5811 124 0 -16.93 -0.5140 MIMAT0005854 mmu-miR-467g 73998 Herc3 uaUAUACACACACAUACAUAu ||| | | | ||||||| ugAUAAAUAU-UUUAUGUAUu 2 20 699 718 [mm9:6:58854021-58854040:+] 0.5287 149 7 -4.89 -1.2145 MIMAT0005855 mmu-miR-467h 73998 Herc3 uguAUAUGUACGUGUGUGAAUa |||| || :| |||:||| ccuUAUAAAUAUA-ACAUUUAa 2 20 1367 1387 [mm9:6:58870282-58870302:+] 0.6416 145 0 -7.27 -0.1512 MIMAT0005857 mmu-miR-1196 73998 Herc3 uccgucUCCGUCCAUCUAAa ||| | ||||||| ugaugaAGGAAUGUAGAUUu 2 15 1286 1305 [mm9:6:58870201-58870220:+] 0.5811 154 7 -12.73 -0.9092 MIMAT0005858 mmu-miR-1197 73998 Herc3 ucuUCAUCUGGUACACAGGAu :|||| :: | |||||| auuGGUAGUUUUUUUGUCCUu 2 19 1350 1370 [mm9:6:58870265-58870285:+] 0.6416 130 6 -13.71 -0.2809 MIMAT0007864 mmu-miR-1897-5p 73998 Herc3 ggggGAGAAAGAGGUAGGUUuc :|| | | :|||||| auagUUCAAUAU-UAUCCAAua 3 19 1435 1455 [mm9:6:58870350-58870370:+] 0.7216 124 0 -8.69 -0.4917 MIMAT0007876 mmu-miR-1907 73998 Herc3 uggaggUCUAGGAGACGACGAg | | : | ||||||| --auggAUAAUGUGUGCUGCUg 2 17 1 20 [mm9:6:58853323-58853342:+] 0.5246 144 7 -12.45 -0.1649 MIMAT0007876 mmu-miR-1907 73998 Herc3 ugGAGGU-CUAGGAGACGACGAg ||:|| || ||:||||||| uuCUUCACCAUGCUUUGCUGCUc 2 21 374 396 [mm9:6:58869289-58869311:+] 0.5903 167 7 -26.84 -0.4512 MIMAT0007876 mmu-miR-1907 73998 Herc3 ugGAGGUCUAGGAGACGACGAg :||| :| ||:||||||| ucUUCCUUGU-CUUUGCUGCUu 2 21 905 925 [mm9:6:58869820-58869840:+] 0.5811 158 7 -26.72 -0.5434 MIMAT0007877 mmu-miR-1894-5p 73998 Herc3 ucuccGUCCACCAUCCCCU-CUc || ||||| ||||| || aaaauCA-GUGGUUGGGGAUGAg 2 18 179 200 [mm9:6:58869094-58869115:+] 0.5549 127 0 -25.09 -0.3339 MIMAT0009397 mmu-miR-1933-3p 73998 Herc3 uaucAGUGUGACUACCA-GGACc |:| || || ||| |||| uguuUUAAACCGA-GGUACCUGu 2 19 259 280 [mm9:6:58869174-58869195:+] 0.5582 120 0 -12.06 -0.4082 MIMAT0009399 mmu-miR-1935 73998 Herc3 ucucuAGGCGGUCGGAGACGGa | :|: | |||||||| aauuuUAUGUAAACCUCUGCCa 2 18 436 457 [mm9:6:58853758-58853779:+] 0.4856 153 7 -18.13 -1.1564 MIMAT0009408 mmu-miR-1943 73998 Herc3 aggucCAC--GGGUCUAGGAGGGAa ||| ||| |||||||| uucuuGUGCUCCCCUCUCCUCCCUu 2 19 864 888 [mm9:6:58869779-58869803:+] 0.5811 153 7 -26.87 -0.4331 MIMAT0009415 mmu-miR-1948 73998 Herc3 gacaugcucacgaGACGGAUUu :||||||| ucuuguuuccauaUUGCCUAAg 2 10 773 794 [mm9:6:58869688-58869709:+] 0.5811 141 7 -12.80 -0.9231 MIMAT0009417 mmu-miR-1950 73998 Herc3 acuGGUAUAGGAAUCUACGUCu ::||| :| ||||||| uacUUAUAGAUUGUGAUGCAGc 2 20 1255 1276 [mm9:6:58870170-58870191:+] 0.5811 151 7 -13.74 -0.6637 MIMAT0009418 mmu-miR-669l 73998 Herc3 uguAUAUGUACGUGUGUGUUGa || | | | |:||||||: auuUAAAAAAG-AUACACAAUu 2 20 1382 1402 [mm9:6:58870297-58870317:+] 0.6416 137 0 -11.63 -0.3033 MIMAT0009419 mmu-miR-669m 73998 Herc3 uaUACAAAC-ACACCUACAUAUa || || | || ||||||| acAUUCCUGAUAUGCAUGUAUAu 2 21 217 239 [mm9:6:58853539-58853561:+] 0.5039 151 7 -8.03 -0.4041 MIMAT0009419 mmu-miR-669m 73998 Herc3 uauacaaacacaccUACAUAua |||||| uugauaaauauuuuAUGUAUuu 3 9 698 719 [mm9:6:58854020-58854041:+] 0.5287 120 0 -3.66 -0.1085 MIMAT0009421 mmu-miR-669o 73998 Herc3 uguAUUUGUACGUGUGUGUUGAu |||| | | |:||||||:| auuUAAAAAAG-AUACACAAUUa 2 21 1382 1403 [mm9:6:58870297-58870318:+] 0.6416 150 0 -13.44 -0.2601 MIMAT0009425 mmu-miR-1954 73998 Herc3 uugucccagagugAGACGUca |||||| uauuuucuaugugUCUGCAua 3 9 1415 1435 [mm9:6:58870330-58870350:+] 0.7216 120 0 -7.43 -0.2013 MIMAT0009426 mmu-miR-1955 73998 Herc3 uuuucgacgucaCGUAGGAC-CCUGa |::||||| |||| cuggaggagaugGUGUCCUGCGGACa 2 14 96 121 [mm9:6:58853418-58853443:+] 0.5246 121 0 -22.19 -0.3227 MIMAT0009427 mmu-miR-669n 73998 Herc3 uguguguaggUGUGUGUUua |:|||||| uuuaaaaaagAUACACAAuu 3 11 1383 1402 [mm9:6:58870298-58870317:+] 0.6416 126 0 -8.04 -0.3059 MIMAT0009431 mmu-miR-1958 73998 Herc3 ugAAUGACGAAGGUGA-AAGGAu ||:|| || |:||| ||||| ucUUGCU-CUCCUACUCUUCCUu 2 21 891 912 [mm9:6:58869806-58869827:+] 0.5811 134 0 -20.55 -0.2955 MIMAT0009431 mmu-miR-1958 73998 Herc3 ugAAUGACG-AAGGUGA-AAGGAu | ||| | |||| || ||||| cuUGACUCCGUUCCCCUCUUCCUu 2 21 923 946 [mm9:6:58869838-58869861:+] 0.5811 131 0 -14.59 -0.1496 MIMAT0009433 mmu-miR-1960 73998 Herc3 ucGGGAGAAGAUUGUCGUGACc ||: || || |||||||| uuCCUACUCCU--CAGCACUGg 2 21 469 488 [mm9:6:58869384-58869403:+] 0.5688 157 7 -25.44 -0.1177 MIMAT0009436 mmu-miR-1963 73998 Herc3 cuuccGGAGUACU--AGAG-CAGGGu |:|| ||: |||| ||||| gcucuCUUCCUGGCCUCUCAGUCCCu 2 19 393 418 [mm9:6:58869308-58869333:+] 0.5903 125 0 -21.07 -0.2214 MIMAT0009442 mmu-miR-1969 73998 Herc3 ugGGUACAAU---UUCAG-AGGUAGaa ||| ||| ||| | |||||| ccCCAGCUUACCUAAGACAUCCAUCcc 3 22 5 31 [mm9:6:58868920-58868946:+] 0.6708 135 0 -16.19 -0.2794 MIMAT0011210 mmu-miR-2134 73998 Herc3 cguggggcaaAGGGUUCUg |||||||| cagauggaacUCCCAAGAc 2 10 523 541 [mm9:6:58869438-58869456:+] 0.5470 145 7 -16.92 -0.3438 MIMAT0011217 mmu-miR-2141 73998 Herc3 uugaaaagacuGUGGAGGa ||||||| ggaaaugaauuCACCUCCa 2 9 192 210 [mm9:6:58853514-58853532:+] 0.5316 140 7 -13.30 -1.1898 MIMAT0011286 mmu-miR-2182 73998 Herc3 gcgccGCACCCUUUACACCGCa :|| | |: ||||||| auuacUGU-GCAGCUGUGGCGc 2 18 121 141 [mm9:6:58853443-58853463:+] 0.5373 147 7 -16.37 -0.2250 MIMAT0011287 mmu-miR-2183 73998 Herc3 uccuccAGUCCCCAAGUu || |||||||| gguguuUCUGGGGUUCAa 2 13 141 158 [mm9:6:58869056-58869073:+] 0.5836 152 7 -18.89 -0.6959 MIMAT0012771 mmu-miR-432 73998 Herc3 gacgggUGACUAGAUGA-GGUUCu | ||:|:| || ||||| gguuaaAAUGGUUUCCUGCCAAGc 2 18 58 81 [mm9:6:58853380-58853403:+] 0.5246 125 0 -15.67 -0.5322 MIMAT0012771 mmu-miR-432 73998 Herc3 gaCGGGUGACUA-GAUGA-GGUUCu |||||| ||| ||| ||||| caGCCCACAGAUGGAACUCCCAAGa 2 22 516 540 [mm9:6:58869431-58869455:+] 0.5470 136 0 -26.13 -0.4635 MIMAT0012774 mmu-miR-664 73998 Herc3 aucCGA-CCCCUCAUUUACUUAu ||| | ||| |||||||| uccGCUCAGUGAGGAAAUGAAUu 2 20 180 202 [mm9:6:58853502-58853524:+] 0.5316 162 7 -13.83 -0.2805 MIMAT0015640 mmu-miR-3470a 73998 Herc3 ggucGGACCAGAUGUU-UCACu :|||| | ||| |||| uguuUCUGGGGUUCAAUAGUGa 2 18 143 164 [mm9:6:58869058-58869079:+] 0.5836 121 0 -16.18 -0.8747 MIMAT0000123 mmu-miR-1 73998 Herc3 uaUGUAUG-AAGAAAUGUAAGGu || | | | || ||||||| ucACCUCCAUCCUAAACAUUCCu 2 21 202 224 [mm9:6:58853524-58853546:+] 0.5131 151 7 -9.80 -0.8612 MIMAT0000124 mmu-miR-15b 73998 Herc3 acAUUUGGUACUACACGACGAu |::|: ||| ||||||||| -aUGGAUAAUG-UGUGCUGCUg 2 21 1 20 [mm9:6:58853323-58853342:+] 0.5246 166 7 -21.61 -0.1618 MIMAT0000124 mmu-miR-15b 73998 Herc3 acauuUGGUACUACACGACGAu |||||| | ||||||| ucuucACCAUGCUUUGCUGCUc 2 18 375 396 [mm9:6:58869290-58869311:+] 0.5903 169 7 -19.11 -0.4317 MIMAT0000124 mmu-miR-15b 73998 Herc3 acauuuGGUAC-UACACGACGAu || || | ||||||| acucuuCCUUGUCUUUGCUGCUu 2 17 903 925 [mm9:6:58869818-58869840:+] 0.5811 147 7 -13.87 -0.5327 MIMAT0000125 mmu-miR-23b 73998 Herc3 ccauuagggaccguUACACUa |||||| cgguacuaauuuucAUGUGAu 2 8 491 511 [mm9:6:58853813-58853833:+] 0.5081 120 6 -11.22 -0.1494 MIMAT0000126 mmu-miR-27b 73998 Herc3 cgucuugaaucggUGACACUu ||||||| accucugucucuaACUGUGAa 2 9 1003 1023 [mm9:6:58869918-58869938:+] 0.5811 140 7 -12.99 -1.2045 MIMAT0000128 mmu-miR-30a 73998 Herc3 gaaggucagcuccUACAAAUGu |||||||: acaauuauauaaaAUGUUUAUu 2 10 1397 1418 [mm9:6:58870312-58870333:+] 0.6816 129 0 -6.22 -0.1813 MIMAT0000130 mmu-miR-30b 73998 Herc3 ucgacucACAUCCUACAAAUGu | || |||||||: acaauuaUAUAAAAUGUUUAUu 2 16 1397 1418 [mm9:6:58870312-58870333:+] 0.6816 135 0 -5.87 -0.1779 MIMAT0000138 mmu-miR-126-3p 73998 Herc3 gcGUAAUAAUG-AGUGCCAUGcu :| || |:: ||||||| uuUAGUAGUGUAAAACGGUACua 3 21 476 498 [mm9:6:58853798-58853820:+] 0.5081 127 0 -12.34 -0.2533 MIMAT0000139 mmu-miR-127 73998 Herc3 ucgguucgagucugCCUAGGCu ||||||| gagacaccggucuaGGAUCCGc 2 9 163 184 [mm9:6:58853485-58853506:+] 0.5501 140 7 -20.75 -0.3924 MIMAT0000140 mmu-miR-128 73998 Herc3 uuucucuggccaagUGACACu |||||| aaccucugucucuaACUGUGa 2 8 1002 1022 [mm9:6:58869917-58869937:+] 0.5811 120 6 -12.83 -0.1699 MIMAT0000150 mmu-miR-138 73998 Herc3 gccGGACUA-AGUGUUGUGGU-CGa |||||| |: | ||||| || aguCCUGAUGUUUCUUCACCAUGCu 2 21 363 387 [mm9:6:58869278-58869302:+] 0.5903 127 0 -21.67 -0.3973 MIMAT0000156 mmu-miR-144 73998 Herc3 ucAUGUAGUAGAUAU-GACAu | ::|::|||||| |||| uuUCUGUUGUCUAUAUCUGUu 2 19 537 557 [mm9:6:58853859-58853879:+] 0.5250 130 0 -11.98 -0.6940 MIMAT0000210 mmu-miR-181a 73998 Herc3 ugaGUGGCUGUCGCAACU-UACAa ||| |:||| ||| |||| gagCAC--AUAGCUGUGAUAUGUa 2 21 284 305 [mm9:6:58853606-58853627:+] 0.5120 121 0 -12.75 -0.4349 MIMAT0000210 mmu-miR-181a 73998 Herc3 ugaguGGCUGUCGCAACUUACAa || || | ||||||| uuguuCCUUCAUCUGUGAAUGUg 2 19 280 302 [mm9:6:58869195-58869217:+] 0.5903 150 7 -12.34 -0.2661 MIMAT0000219 mmu-miR-24 73998 Herc3 gacaaggacgacUUGACUCGGu |:||||||| ccaagacaaagaAGCUGAGCCu 2 11 535 556 [mm9:6:58869450-58869471:+] 0.5470 146 7 -15.02 -0.2144 MIMAT0000223 mmu-miR-193 73998 Herc3 ugacccugaaacaucCGGUCAa |||||| uuuauguaaaccucuGCCAGUu 2 8 439 460 [mm9:6:58853761-58853782:+] 0.4957 120 6 -9.95 -0.1064 MIMAT0000224 mmu-miR-194 73998 Herc3 agguguaccucaacGACAAUGu ||||||| ucuguugucuauauCUGUUACa 2 9 539 560 [mm9:6:58853861-58853882:+] 0.5250 140 7 -14.36 -1.2350 MIMAT0000225 mmu-miR-195 73998 Herc3 cggUUAUAAAGACACGACGAu :||| | ||||||||| augGAUA-AUGUGUGCUGCUg 2 19 1 20 [mm9:6:58853323-58853342:+] 0.5246 156 7 -17.98 -0.1603 MIMAT0000225 mmu-miR-195 73998 Herc3 cgguuauAAAGACACGACGAu | ||| ||||||| ucuuccuUGUCUUUGCUGCUu 2 15 905 925 [mm9:6:58869820-58869840:+] 0.5811 154 7 -15.96 -0.5398 MIMAT0000225 mmu-miR-195 73998 Herc3 cgguuauaAAGACACGACGAu | || ||||||| cuucaccaUGCUUUGCUGCUc 2 14 376 396 [mm9:6:58869291-58869311:+] 0.5903 149 7 -15.47 -0.4447 MIMAT0000233 mmu-miR-200b 73998 Herc3 aguaguaAUGGUCCGUCAUAAu |:||| |||||||| gguuuccUGCCAAGCAGUAUUu 2 16 67 88 [mm9:6:58853389-58853410:+] 0.5246 163 7 -16.28 -0.2306 MIMAT0000238 mmu-miR-205 73998 Herc3 gucUGAGGC-CA-CCUUACUUCCu :| ||| || :||||||| gcaGCACCGAGUCUUGAUGAAGGa 2 20 1272 1295 [mm9:6:58870187-58870210:+] 0.5811 145 7 -22.49 -0.5842 MIMAT0000238 mmu-miR-205 73998 Herc3 gucUGAGGCCACCUUACUUCcu |:|: | ||||||| uuuAUUUAUCUAAAAUGAAGua 3 20 1235 1256 [mm9:6:58870150-58870171:+] 0.5811 127 0 -6.03 -0.1060 MIMAT0000239 mmu-miR-206 73998 Herc3 ggUGUGUGAAGGA-AUGUAAGGu || : | |||| ||||||| ucACCUCCAUCCUAAACAUUCCu 2 21 202 224 [mm9:6:58853524-58853546:+] 0.5131 155 7 -17.45 -0.8647 MIMAT0000248 mmu-miR-30e 73998 Herc3 gaaggucaguuccUACAAAUGu |||||||: acaauuauauaaaAUGUUUAUu 2 10 1397 1418 [mm9:6:58870312-58870333:+] 0.6816 129 0 -6.22 -0.1779 MIMAT0000368 mmu-miR-291a-3p 73998 Herc3 cguguguUUCACCUUCGUGAAa || | ||||||| caguuauAAUUCACAGCACUUg 2 16 559 580 [mm9:6:58853881-58853902:+] 0.5250 143 7 -9.84 -0.5221 MIMAT0000372 mmu-miR-294 73998 Herc3 ugUGU--GUUUUCCCU-UCGUGAAa ||| :| || | ||||||| uuACAGUUAUAAUUCACAGCACUUg 2 21 556 580 [mm9:6:58853878-58853902:+] 0.5250 142 7 -10.44 -0.5186 MIMAT0000373 mmu-miR-295 73998 Herc3 ucUGAGUUUUCAUCAUCGUGAAa | |:| || | ||||||| acAGUUAUAAUUCACAGCACUUg 2 22 558 580 [mm9:6:58853880-58853902:+] 0.5250 153 7 -8.84 -0.5186 MIMAT0004577 mmu-miR-299 73998 Herc3 uucgcCAAAUGGCAGGGU-GUAu |||| || |||| ||| aacauGUUUCCCUCCCCAGCAUu 2 18 354 376 [mm9:6:58853676-58853698:+] 0.5120 125 0 -13.53 -0.2979 MIMAT0000380 mmu-miR-302a 73998 Herc3 agUGGUUUUGUACCUUCGUGAAu :::| ||: | ||||||| caGUUAUAAU-UCACAGCACUUg 2 22 559 580 [mm9:6:58853881-58853902:+] 0.5250 143 7 -12.43 -0.5221 MIMAT0000514 mmu-miR-30c 73998 Herc3 cgacucucACAUCCUACAAAUGu | || |||||||: cacaauuaUAUAAAAUGUUUAUu 2 16 1396 1418 [mm9:6:58870311-58870333:+] 0.6816 135 0 -5.87 -0.1779 MIMAT0000515 mmu-miR-30d 73998 Herc3 gaaggucagccccUACAAAUGu |||||||: acaauuauauaaaAUGUUUAUu 2 10 1397 1418 [mm9:6:58870312-58870333:+] 0.6816 129 0 -7.28 -0.1831 MIMAT0000517 mmu-miR-192 73998 Herc3 ccGACAGUUAAGUAUCCAGUc || | |: |||||||| ugCUUUAAGGAAAUAGGUCAu 2 20 602 622 [mm9:6:58869517-58869537:+] 0.5470 151 7 -14.72 -0.3671 MIMAT0000526 mmu-miR-15a 73998 Herc3 guguuugGUAAUACACGACGAu :| |:||||||||| --auggaUAAUGUGUGCUGCUg 2 16 1 20 [mm9:6:58853323-58853342:+] 0.5246 159 7 -19.77 -0.1634 MIMAT0000526 mmu-miR-15a 73998 Herc3 guguuUGGUAAUACACGACGAu ||||| | ||||||| ucuucACCAUGCUUUGCUGCUc 2 18 375 396 [mm9:6:58869290-58869311:+] 0.5903 161 7 -16.78 -0.4349 MIMAT0000526 mmu-miR-15a 73998 Herc3 guguuuGGUA-AUACACGACGAu || | | | ||||||| acucuuCCUUGUCUUUGCUGCUu 2 17 903 925 [mm9:6:58869818-58869840:+] 0.5811 147 7 -13.94 -0.5362 MIMAT0000527 mmu-miR-16 73998 Herc3 gcggUUAUAAAUGCACGACGAu :||| |::|||||||| -augGAUA-AUGUGUGCUGCUg 2 19 1 20 [mm9:6:58853323-58853342:+] 0.5246 156 7 -19.52 -0.1603 MIMAT0000527 mmu-miR-16 73998 Herc3 gcgGUUAUAAAUGCACGACGAu | ||: || ||||||| ucaCCAUGCUU---UGCUGCUc 2 20 378 396 [mm9:6:58869293-58869311:+] 0.5903 143 7 -12.70 -0.4198 MIMAT0000527 mmu-miR-16 73998 Herc3 gcgguuauAAAUGCACGACGAu | | : ||||||| cucuuccuUGUCUUUGCUGCUu 2 15 904 925 [mm9:6:58869819-58869840:+] 0.5811 142 7 -11.73 -0.5398 MIMAT0000532 mmu-miR-23a 73998 Herc3 ccuuuagggaccguUACACUa |||||| cgguacuaauuuucAUGUGAu 2 8 491 511 [mm9:6:58853813-58853833:+] 0.5081 120 6 -10.00 -0.1494 MIMAT0000537 mmu-miR-27a 73998 Herc3 cgccuugaaucggUGACACUu ||||||| accucugucucuaACUGUGAa 2 9 1003 1023 [mm9:6:58869918-58869938:+] 0.5811 140 7 -12.99 -1.2045 MIMAT0000538 mmu-miR-31 73998 Herc3 guCGAUACGGUCGUAGAACGGa | ||||:| | ||||||| ugGAUAUGUC-CCUUCUUGCCc 2 21 434 454 [mm9:6:58869349-58869369:+] 0.5903 158 7 -17.18 -0.1982 MIMAT0000539 mmu-miR-92a 73998 Herc3 gucCGGCCCUGU-UCACGUUAu |:| | |:| ||| |||| uguGUCUGCAUAUAGUUCAAUa 2 19 1424 1445 [mm9:6:58870339-58870360:+] 0.7216 125 0 -8.81 -0.1622 MIMAT0000548 mmu-miR-322 73998 Herc3 aggUUUUGUACUUAACGACGAc | ||::|| ||||||| uggAUAAUGUG---UGCUGCUg 2 20 2 20 [mm9:6:58853324-58853342:+] 0.5246 147 7 -17.28 -0.1502 MIMAT0000548 mmu-miR-322 73998 Herc3 agguuUUGUACUUAACGACGAc | |||| |||||||| ucuucACCAUGCUUUGCUGCUc 2 18 375 396 [mm9:6:58869290-58869311:+] 0.5903 161 7 -17.35 -0.4381 MIMAT0000548 mmu-miR-322 73998 Herc3 agguuuuguacuuAACGACGAc |||||||| cucuuccuugucuUUGCUGCUu 2 10 904 925 [mm9:6:58869819-58869840:+] 0.5811 145 7 -13.02 -0.5398 MIMAT0004651 mmu-miR-340-5p 73998 Herc3 uuagucagaguaacGAAAUAUu ||||||| aauaugaagauacuCUUUAUAa 2 9 1024 1045 [mm9:6:58869939-58869960:+] 0.5811 140 7 -6.44 -1.0711 MIMAT0004651 mmu-miR-340-5p 73998 Herc3 uuaGUCAGAGUAAC-GAAAUAUu :|||:|: ||| | ||||| uggUAGUUUUUUUGUCCUUAUAa 2 20 1352 1374 [mm9:6:58870267-58870289:+] 0.6416 134 0 -11.45 -0.1102 MIMAT0000653 mmu-miR-28 73998 Herc3 gaguuaucugacacUCGAGGAa ||||||| cuuuauuccuuucuAGCUCCUg 2 9 824 845 [mm9:6:58869739-58869760:+] 0.5811 140 7 -11.78 -0.5095 MIMAT0000656 mmu-miR-139-5p 73998 Herc3 gaccucugugcacguGACAUCu |||||| auucuaauuuuaaauCUGUAGu 2 8 1199 1220 [mm9:6:58870114-58870135:+] 0.5811 120 6 -8.43 -0.1445 MIMAT0000657 mmu-miR-200c 73998 Herc3 agguaguaAUGGGCCGUCAUAAu |:|| |||||||| ugguuuccUGCCAAGCAGUAUUu 2 16 66 88 [mm9:6:58853388-58853410:+] 0.5246 155 7 -17.27 -0.2306 MIMAT0000666 mmu-miR-320 73998 Herc3 agcgggagaguuGGGUCGAAAa ::||||||| uggcaguagguuUUCAGCUUUu 2 11 323 344 [mm9:6:58869238-58869259:+] 0.5903 142 7 -14.11 -0.5699 MIMAT0000666 mmu-miR-320 73998 Herc3 agcgGGAGAGUUGGGU-CGAAAa ::|||: | ||| ||||| gaugUUUCUUCA-CCAUGCUUUg 2 19 369 390 [mm9:6:58869284-58869305:+] 0.5903 120 0 -14.98 -0.1953 MIMAT0000673 mmu-miR-181b 73998 Herc3 uggGUGGCUGUCGUUACU-UACAa ||| |:||| :||| |||| gagCAC--AUAGCUGUGAUAUGUa 2 21 284 305 [mm9:6:58853606-58853627:+] 0.5120 125 0 -13.82 -0.4349 MIMAT0000673 mmu-miR-181b 73998 Herc3 uggguGGCUGUCGUUACUUACAa || || | :||||||| uuguuCCUUCAUCUGUGAAUGUg 2 19 280 302 [mm9:6:58869195-58869217:+] 0.5903 154 7 -12.24 -0.2661 MIMAT0000674 mmu-miR-181c 73998 Herc3 ugaguGGCUGUCCA-ACUUACAa || || | ||||||| uuguuCCUUCAUCUGUGAAUGUg 2 18 280 302 [mm9:6:58869195-58869217:+] 0.5903 144 7 -11.26 -0.2638 MIMAT0000674 mmu-miR-181c 73998 Herc3 ugAGUGGCUGUCCAACUU-ACAa |:|:| ||| | |||| ||| uuUUAUC-ACAUG-UGAAGUGUg 2 21 1057 1077 [mm9:6:58869972-58869992:+] 0.5811 120 0 -12.05 -0.6665 MIMAT0000679 mmu-miR-217 73998 Herc3 aggucaGUCAAGGAC--UACGU-CAu || |||||| ||||| || ccuaaaCA-UUCCUGAUAUGCAUGUa 2 18 212 236 [mm9:6:58853534-58853558:+] 0.5039 122 0 -18.58 -1.1750 MIMAT0000704 mmu-miR-361 73998 Herc3 caugGGGACCUCUAA-GACUAUu :||| | ||| |||||| uccaUCCUAAACAUUCCUGAUAu 2 19 207 229 [mm9:6:58853529-58853551:+] 0.5039 126 6 -11.31 -0.7026 MIMAT0000708 mmu-miR-363 73998 Herc3 augucuACCUAUGGCACGUUAa || |||: || |||| ugugucUGCAUAUAGUUCAAUa 2 17 1424 1445 [mm9:6:58870339-58870360:+] 0.7216 128 0 -4.98 -0.1592 MIMAT0000746 mmu-miR-381 73998 Herc3 ugucucucgaacGGGAACAUAu :::|||||| ccaaucucaaccUUUUUGUAUc 2 11 670 691 [mm9:6:58853992-58854013:+] 0.5287 126 6 -6.63 -0.1056 MIMAT0000746 mmu-miR-381 73998 Herc3 ugUCUCUCGAACGGGAACA-UAu ||| |||| |||||| || aaAGA-AGCUGAGCCUUGUCAUa 2 21 542 563 [mm9:6:58869457-58869478:+] 0.5470 126 0 -16.67 -0.2055 MIMAT0000766 mmu-miR-335-5p 73998 Herc3 uguaaaaAGCAAUAACGAGAACu |:|| || ||||||| cugagccUUGUCAUAGCUCUUGa 2 17 549 571 [mm9:6:58869464-58869486:+] 0.5470 160 7 -15.15 -0.8223 MIMAT0000766 mmu-miR-335-5p 73998 Herc3 uguAAAAAGCAAUAACGA-GAACu || |:|| ||||| |||| cucUUCCUUGUCUUUGCUGCUUGa 2 21 904 927 [mm9:6:58869819-58869842:+] 0.5811 128 0 -14.57 -0.4227 MIMAT0000904 mmu-miR-215 73998 Herc3 caGACAGUUUAGUAUCCAGUa || | |:: |||||||| ugCUUUAAGGAAAUAGGUCAu 2 20 602 622 [mm9:6:58869517-58869537:+] 0.5470 155 7 -17.55 -0.3671 MIMAT0004745 mmu-miR-384-5p 73998 Herc3 ugUAACGGAUCCUUAACAAAUGu ||| : || || ||||||: caAUUAUAUA--AAAUGUUUAUu 2 22 1398 1418 [mm9:6:58870313-58870333:+] 0.6816 138 0 -4.60 -0.1796 MIMAT0001091 mmu-miR-410 73998 Herc3 uguccGGUAGAC-ACA-AUAUAa |: |||| ||| ||||| auuaaCUUUCUGUUGUCUAUAUc 2 17 531 553 [mm9:6:58853853-58853875:+] 0.5250 123 0 -9.80 -0.8112 MIMAT0001091 mmu-miR-410 73998 Herc3 uguccgguagacacAAUAUAa |||||| aaaaagauacacaaUUAUAUa 2 8 1387 1407 [mm9:6:58870302-58870322:+] 0.6416 120 6 -3.84 -0.3285 MIMAT0001095 mmu-miR-370 73998 Herc3 ugguccaagguggGGUCGUCCg :||||||| cuuuuggaaauaaUCAGCAGGg 2 10 381 402 [mm9:6:58853703-58853724:+] 0.4988 141 7 -17.17 -0.5837 MIMAT0001095 mmu-miR-370 73998 Herc3 ugGUCCAAGGUGGGGUCGUCCg || || |:::||||||| uaCA-GUGAAAUUUCAGCAGGg 2 21 1082 1102 [mm9:6:58869997-58870017:+] 0.5811 150 7 -21.52 -0.7363 MIMAT0004750 mmu-miR-425 73998 Herc3 aguugcccucacuagcACAGUAa |||||| uuguuuucuaauuuuuUGUCAUg 2 8 618 640 [mm9:6:58853940-58853962:+] 0.5250 120 6 -4.85 -0.1003 MIMAT0001533 mmu-miR-448 73998 Herc3 uacccUGU-AGGAUGUAUACGUu ||| ||||: ||||||| ccuaaACAUUCCUG-AUAUGCAu 2 18 212 233 [mm9:6:58853534-58853555:+] 0.5039 158 7 -15.82 -0.5053 MIMAT0001537 mmu-miR-429 73998 Herc3 ugccguaAUGGUCUGUCAUAAu |:||| :||||||| gguuuccUGCCAAGCAGUAUUu 2 16 67 88 [mm9:6:58853389-58853410:+] 0.5246 159 7 -16.59 -0.2306 MIMAT0001632 mmu-miR-451 73998 Herc3 uuGAGUCAUUAC-CAUUGCCAaa :|:||||:|| |||||| auUUUAGUAGUGUAAAACGGUac 3 21 474 496 [mm9:6:58853796-58853818:+] 0.5057 143 0 -18.88 -0.1322 MIMAT0003112 mmu-miR-489 73998 Herc3 cgACGGUAUAUACACCACA-GUAa | :|| ||:|| |||| ||| uuUAUCACAUGUGAAGUGUGCAUu 2 22 1058 1081 [mm9:6:58869973-58869996:+] 0.5811 129 0 -14.53 -0.5699 MIMAT0003168 mmu-miR-543 73998 Herc3 uucuucacguggcgcUUACAAa |||||| uacacaauuauauaaAAUGUUu 2 8 1394 1415 [mm9:6:58870309-58870330:+] 0.6816 120 6 -5.63 -0.3139 MIMAT0003181 mmu-miR-367 73998 Herc3 agugguaACG-AUUUCACGUUAa ||| || ||| |||| augugucUGCAUAUAGUUCAAUa 2 16 1423 1445 [mm9:6:58870338-58870360:+] 0.7216 126 0 -7.19 -0.1607 MIMAT0003182 mmu-miR-494 73998 Herc3 cuccaaagggcacaUACAAAGu ||||||| cuggccauagcaacAUGUUUCc 2 9 343 364 [mm9:6:58853665-58853686:+] 0.5120 140 7 -7.67 -0.2145 MIMAT0003182 mmu-miR-494 73998 Herc3 cuccaaagggcacaUACAAAGu ||||||| uuucuucauuaaaaAUGUUUCc 2 9 718 739 [mm9:6:58854040-58854061:+] 0.5287 140 7 -6.21 -1.1319 MIMAT0003182 mmu-miR-494 73998 Herc3 cuccAAAGGGCACAUACA-AAGu |||: ||||||| ||| uuucUUUUGGCUGUAUGUGUUCc 2 19 649 671 [mm9:6:58853971-58853993:+] 0.5269 126 0 -11.06 -0.9663 MIMAT0003182 mmu-miR-494 73998 Herc3 cuccaaagGGCACAUACAAAGu :| || ||||||| ucccucagUCCUG-AUGUUUCu 2 15 357 377 [mm9:6:58869272-58869292:+] 0.5903 144 7 -12.91 -0.2460 MIMAT0003182 mmu-miR-494 73998 Herc3 cuccaaagggcacaUACAAAgu |||||| cacaauuauauaaaAUGUUUau 3 9 1396 1417 [mm9:6:58870311-58870332:+] 0.6816 120 0 -3.79 -0.2281 MIMAT0003183 mmu-miR-376c 73998 Herc3 ugcacuuuAAAGGAGAUACAa | |::||||||| aaaauguuUAUUUUCUAUGUg 2 14 1407 1427 [mm9:6:58870322-58870342:+] 0.6816 149 7 -11.60 -1.0462 MIMAT0003374 mmu-miR-302b 73998 Herc3 gaUGAUUUUGUACCUUCGUGAAu ::|| ||: | ||||||| caGUUAUAAU-UCACAGCACUUg 2 22 559 580 [mm9:6:58853881-58853902:+] 0.5250 147 7 -11.02 -0.5221 MIMAT0003377 mmu-miR-302d 73998 Herc3 ugUGAGUUUGUACCU-UCGUGAAu | |:| | || | ||||||| acAGUUAUA-AUUCACAGCACUUg 2 22 558 580 [mm9:6:58853880-58853902:+] 0.5250 146 7 -13.15 -0.5221 MIMAT0003727 mmu-miR-374 73998 Herc3 guGAAUCGUCCA-ACAUAAUAua | || :|| | |||||| ugCAUA-UAGUUCAAUAUUAUcc 3 21 1430 1451 [mm9:6:58870345-58870366:+] 0.7216 121 0 -5.62 -0.2174 MIMAT0003727 mmu-miR-374 73998 Herc3 gugaaucguccaacaUAAUAUa |||||| uaaaaaagauacacaAUUAUAu 2 8 1385 1406 [mm9:6:58870300-58870321:+] 0.6416 120 6 -4.80 -0.1460 MIMAT0003730 mmu-miR-592 73998 Herc3 uguaguagcguauaacUGUGUUa |||||| aacauuuaaaaaagauACACAAu 2 8 1379 1401 [mm9:6:58870294-58870316:+] 0.6416 120 6 -9.35 -0.3324 MIMAT0003738 mmu-miR-496 73998 Herc3 cucUAACCGGUACAUUAUGAGu | || ::|| ||||||| ugaAAUGAGUGUG-AAUACUCc 2 20 589 609 [mm9:6:58853911-58853931:+] 0.5250 149 7 -10.12 -0.4534 MIMAT0003738 mmu-miR-496 73998 Herc3 cucuaaccgGUAC-AUUAUGAGu :||| :|||||| cugugaaaaUAUGAAGAUACUCu 2 14 1017 1039 [mm9:6:58869932-58869954:+] 0.5811 128 6 -9.26 -0.1212 MIMAT0003450 mmu-miR-488 73998 Herc3 cuGGUUCUUUG--UCGGAA-AGUu | |||||:| |||||| ||| gaCAAAGAAGCUGAGCCUUGUCAu 2 20 539 562 [mm9:6:58869454-58869477:+] 0.5470 134 0 -19.19 -0.1469 MIMAT0003453 mmu-miR-497 73998 Herc3 auGUUUGGUGUCACACGACGAc :::|: |: |||||||||| -aUGGAUAAU-GUGUGCUGCUg 2 21 1 20 [mm9:6:58853323-58853342:+] 0.5246 158 7 -22.57 -0.1665 MIMAT0003453 mmu-miR-497 73998 Herc3 auguuUGGUGUCACACGACGAc ||||:: | ||||||| ucuucACCAUGCUUUGCUGCUc 2 18 375 396 [mm9:6:58869290-58869311:+] 0.5903 161 7 -15.98 -0.4414 MIMAT0003453 mmu-miR-497 73998 Herc3 auguuuggugucACACGACGAc | ||||||| cucuuccuugucUUUGCUGCUu 2 11 904 925 [mm9:6:58869819-58869840:+] 0.5811 142 7 -11.82 -0.5434 MIMAT0003456 mmu-miR-495 73998 Herc3 uuCUUCACGUGGUACA-AACAAa |:: |||| ::||| ||||| gcGGGCUGCA-UGUGUCUUGUUa 2 21 680 701 [mm9:6:58869595-58869616:+] 0.5523 126 0 -10.03 -0.1014 MIMAT0004828 mmu-miR-708 73998 Herc3 gggucgaucuAACAUUCGAGGAa || | ||||||| cuuuauuccuUUCU-AGCUCCUg 2 14 824 845 [mm9:6:58869739-58869760:+] 0.5811 143 7 -13.22 -0.4795 MIMAT0004324 mmu-miR-181d 73998 Herc3 uggGUGGCUGUUGUUACU-UACAa ||| |:|:| :||| |||| gagCAC--AUAGCUGUGAUAUGUa 2 21 284 305 [mm9:6:58853606-58853627:+] 0.5120 121 0 -11.68 -0.4381 MIMAT0004324 mmu-miR-181d 73998 Herc3 uggguGGCUGUUGUUACUUACAa || || | :||||||| uuguuCCUUCAUCUGUGAAUGUg 2 19 280 302 [mm9:6:58869195-58869217:+] 0.5903 154 7 -12.53 -0.2661 MIMAT0004324 mmu-miR-181d 73998 Herc3 uggguggcuGUUGUUACUUA-CAa |||:|:||||| || ucugggguuCAAUAGUGAAUAGUc 2 15 147 170 [mm9:6:58869062-58869085:+] 0.5836 126 0 -15.31 -0.7569 MIMAT0004324 mmu-miR-181d 73998 Herc3 uggguggcuGUUGUUACU-UACAa ||| |:||| |||| cgugugucuCAAAAGUGACAUGUu 2 15 1123 1146 [mm9:6:58870038-58870061:+] 0.5811 122 0 -13.14 -0.6302 MIMAT0004859 mmu-miR-193b 73998 Herc3 ucgcccugaaacaccCGGUCAa |||||| uuuauguaaaccucuGCCAGUu 2 8 439 460 [mm9:6:58853761-58853782:+] 0.4957 120 6 -9.89 -0.1064 MIMAT0004869 mmu-miR-421 73998 Herc3 cgCGGGUUAAUU-ACAGACAACua | || ||||| | ||||||| aaGACC-AUUAACUUUCUGUUGuc 3 22 525 547 [mm9:6:58853847-58853869:+] 0.5250 146 0 -14.23 -0.1277 MIMAT0004896 mmu-miR-590-3p 73998 Herc3 ugaucGAAUAUGUAUU-UUAAu :||:||: ||| |||| accuuUUUGUAUCUAACAAUUg 2 17 679 700 [mm9:6:58854001-58854022:+] 0.5287 124 0 -5.99 -1.1741 MIMAT0004896 mmu-miR-590-3p 73998 Herc3 ugaucgaauAUGUAUUUUAau ||:||||||| auacacaauUAUAUAAAAUgu 3 13 1393 1413 [mm9:6:58870308-58870328:+] 0.6816 136 0 -5.51 -0.2798 MIMAT0004941 mmu-miR-544 73998 Herc3 cucGAACGAUUUUUACGUCUUa ||||| : |||||||| cuuCUUGCCCGCCAUGCAGAAc 2 20 445 466 [mm9:6:58869360-58869381:+] 0.5795 159 7 -16.29 -0.2885 MIMAT0005850 mmu-miR-1192 73998 Herc3 uuaaaCCAGAC--AAACA-AACAAa || ||| | ||| ||||| caggcGGGCUGCAUGUGUCUUGUUa 2 18 677 701 [mm9:6:58869592-58869616:+] 0.5523 120 0 -10.01 -0.1045

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G068231 Herc3 Mus musculus 73998 19536157 0 0 R52894; MOUSE$HERC3_01; Binding factors: mmu-miR-153-3p // 0 0 R52895; MOUSE$HERC3_02; Binding factors: mmu-miR-124-3p // 0 0 R52896; MOUSE$HERC3_03; Binding factors: mmu-miR-21a-5p // 0 0 R52898; MOUSE$HERC3_04; Binding factors: mmu-miR-103-3p , mmu-miR-107-3p , mmu-miR-15a-5p , mmu-miR-15b-5p , mmu-miR-16-5p , mmu-miR-1906 , mmu-miR-1907 , mmu-miR-195a-5p , mmu-miR-322-5p , mmu-miR-497a-5p , mmu-miR-761 // 0 0 R52914; MOUSE$HERC3_05; Binding factors: mmu-miR-15a-5p , mmu-miR-15b-5p , mmu-miR-16-5p , mmu-miR-195a-5p , mmu-miR-503-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Herc3 mmu-miR-29astar beg:171 end:188 pic:3' GACTTGTGGTTTTCTTTAGTCA 5'& | ||| |||||||| &5' -------CTGAAA-AAATCAGT 3' Herc3 mmu-miR-669d beg:647 end:665 pic:3' TGTATATGTACGTGTGTGTTCA 5'& ||| ||.||||||| &5' ------ACACACATACACAAG- 3' Herc3 mmu-miR-297b-5p beg:648 end:661 pic:3' TGTACAAGTACGTGTGTATGTA 5'& |||||||||| &5' -----------CACACATACA- 3' Herc3 mmu-miR-297c beg:648 end:661 pic:3' TGTACATGTACGTGTGTATGTA 5'& |||||||||| &5' -----------CACACATACA- 3' Herc3 mmu-miR-26bstar beg:785 end:800 pic:3' CTCGGTTCATTACCTCTTGTCC 5'& ||| ||||||| &5' --GCCTA-------AGAACAG- 3' Herc3 mmu-miR-28 beg:835 end:845 pic:3' GAGTTATCTGACACTCGAGGAA 5'& ||||||| &5' --------------AGCTCCT- 3' Herc3 mmu-miR-494 beg:362 end:377 pic:3' CTCCAAAGGGCACATACAAAGT 5'& |||.| ||||||| &5' ------TCCTG---ATGTTTC- 3' Herc3 mmu-miR-1186 beg:468 end:487 pic:3' GTACGGAAATTAAGGTCGTGAG 5'& ||| .||||||| &5' ----CCTACTCC-TCAGCACT- 3' Herc3 mmu-miR-669h-5p beg:447 end:463 pic:3' CGTGAGTTGATATGTG-GGTACGTA 5'& |.| | ||||||| &5' -----------TGCCCGCCATGCA- 3' Herc3 mmu-miR-2134 beg:530 end:542 pic:3' CGTGGGGCAAAGGGTTCTG 5'& ||||||||| &5' ----------TCCCAAGAC 3' Herc3 mmu-miR-7a beg:17 end:43 pic:3' TGTTGTTT-TAGTGATC--AGAAGGT 5'& .||| ||| || |||||. &5' --GACATCCATCCCTTCCTTCTTCT- 3' Herc3 mmu-miR-483 beg:25 end:45 pic:3' GAGGGAAGAGAAGAGGGCAGAA 5'& ||||||| |||||.|.|| &5' -TCCCTTC-CTTCTTCTGT--- 3' Herc3 mmu-miR-483 beg:837 end:866 pic:3' GAGGGA-AGAGAAG--AGGGC-AGAA 5'& ||||. ||||||| |||| |||| &5' CTCCTGCTCTCTTCCTTCCCTTTCTT 3' Herc3 mmu-miR-1894-3p beg:843 end:870 pic:3' GAGGGAAGT--GGGAGAG-GGAACG 5'& |||.|||| ||||.|| .||||. &5' CTCTCTTCCTTCCCTTTCTTCTTGT 3' Herc3 mmu-miR-1894-3p beg:869 end:897 pic:3' GAGGGAAGT---GGGAGAGGGAACG 5'& ||||| || |||| |.||||| &5' CTCCCCTCTCCTCCCTTCCTCTTGC 3' Herc3 mmu-miR-1894-3p beg:887 end:915 pic:3' GAGGGA-AGTGG--GAGAGGGAACG 5'& |||.. || || ||||.|||||. &5' CTCTTGCTCTCCTACTCTTCCTTGT 3' Herc3 mmu-miR-483 beg:893 end:918 pic:3' GAG-GGAAGAGAAGAGGGCAGAA 5'& ||| ||| |||||| |..||||| &5' CTCTCCTACTCTTC-CTTGTCTT 3' Herc3 mmu-miR-7a beg:896 end:911 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& || ||| |||||| &5' ---------TC-CTACTCTTCC- 3' Herc3 mmu-miR-1894-3p beg:925 end:947 pic:3' GAGGGAAGTGGGAGAGGGAACG 5'& |||| ||| ||||||.|||| &5' CTCCGTTC-CCCTCTTCCTT-- 3' Herc3 mcmv-miR-m01-3 beg:369 end:383 pic:3' AGCTCCGTTGTCAGCGAAGTGGC 5'& ||. ||||||| &5' -----------GTTTCTTCACC- 3' Herc3 mmu-miR-3099star beg:542 end:551 pic:3' GTTCCCGACCTTCCTTCGACC 5'& ||||||| &5' -------------GAAGCTG- 3' Herc3 mmu-miR-493 beg:725 end:741 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& .|||.| ||||||| &5' -TTGGTA--------GACCTTC- 3' Herc3 mmu-miR-1950 beg:1260 end:1276 pic:3' ACTGGTATAGGAATCTACGTCT 5'& ||. | ||||||| &5' -GATTGT-------GATGCAG- 3' Herc3 mmu-miR-335-5p beg:553 end:572 pic:3' TGTAAAAAGCAATAACGAGAACT 5'& |.|| || |||||||| &5' -------TTGTCATAGCTCTTGA 3' Herc3 mmu-miR-654-5p beg:0 end:17 pic:3' TGTGTACAAGACGTCGAATGGT 5'& || | ||||||||| &5' ------GTACCCCAGCTTACC- 3' Herc3 mmu-miR-1196 beg:1289 end:1306 pic:3' TCCGTCTCCGTCCATCTAAA 5'& ||| |||||||| &5' ------AGGAATGTAGATTT 3' Herc3 mmu-miR-382star beg:288 end:301 pic:3' TTTTTCACAACAGGCACTTACT 5'& ||.||||||| &5' -----------TCTGTGAATG- 3' Herc3 mmu-miR-224 beg:414 end:433 pic:3' TTGCCTTGGTGA--TCACTGAAT 5'& |.|| .|||||||. &5' -------CTACAGGGGTGACTTG 3' Herc3 mcmv-miR-m01-1 beg:855 end:885 pic:3' GGCAAGCT--GCAATA----AGAGGAGA 5'& || ||| .|| ||||||| &5' CCTTTCTTCTTGTGCTCCCCTCTCCTC- 3' Herc3 mcmv-miR-m01-3 beg:269 end:293 pic:3' AGCTCCGTTGTCAGC---GAAGTGGC 5'& ||||.| | ||.| |||||.| &5' --GAGGTACCTGTTGTTCCTTCATC- 3' Herc3 mcmv-miR-m107-1-5p beg:422 end:445 pic:3' CCACTGAGCT-CTGCTCACTGGC 5'& |||||||.|| |. || || &5' GGTGACTTGATGGATA-TGTCC- 3' Herc3 mcmv-miR-m22-1 beg:185 end:197 pic:3' ACCGGAGCCATGCCTGCCCCTT 5'& || .||||| &5' ------------GGTTGGGGA- 3' Herc3 mcmv-miR-m22-1 beg:212 end:236 pic:3' ACCGGAGCCATGCCTGCC-CCTT 5'& ||||.|.||||.||. | ||| &5' TGGCTTTGGTATGGGAAGTGGA- 3' Herc3 mghv-miR-M1-1 beg:71 end:94 pic:3' TTTCCTTCATGCC-GGTAAAGAT 5'& .||||||. |.||||.| &5' --GGGAAGTGATTTCTATTTTT- 3' Herc3 mmu-miR-103 beg:947 end:968 pic:3' AGTATCGGGAC-ATGTTACGACGA 5'& .|||. | |.| ||||||. &5' --GTAGTG--GATGC-ATGCTGT- 3' Herc3 mmu-miR-107 beg:946 end:968 pic:3' ACTATCGGGAC-ATGTTACGACGA 5'& |.|||. | |.| ||||||. &5' -GGTAGTG--GATGC-ATGCTGT- 3' Herc3 mmu-miR-1187 beg:647 end:672 pic:3' AATGTGTGTATGTGTG--T-GTGTAT 5'& ||||||||||||| . |.|| &5' --ACACACATACACAAGAGCCGCA-- 3' Herc3 mmu-miR-1193 beg:420 end:433 pic:3' CTATCATTTTGCCCACTGGAT 5'& |||||||.|. &5' -----------GGGTGACTTG 3' Herc3 mmu-miR-1197 beg:677 end:699 pic:3' TCTTCATCTG--GTACACAGGAT 5'& |.| |.| ||||||||.|. &5' --AGGCGGGCTGCATGTGTCTTG 3' Herc3 mmu-miR-1224 beg:21 end:42 pic:3' GAGGT--GGAGGGGTCAGGAGTG 5'& |||| |||.||. ||.|| &5' -TCCATCCCTTCCT--TCTTC-- 3' Herc3 mmu-miR-1224 beg:845 end:867 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& |||. |||.||| ||.|| &5' CTCTTCCTTCCCTTTCTTC-- 3' Herc3 mmu-miR-1224 beg:463 end:482 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& ||..|||. |||||| &5' ---CATTTCCTAC-TCCTCA- 3' Herc3 mmu-miR-1274a beg:218 end:241 pic:3' ACCGCGGACTTGTC-CCTGGACT 5'& |||. ||.. || ||||.||| &5' TGGTA--TGGGAAGTGGACTTGA 3' Herc3 mmu-miR-128 beg:1004 end:1023 pic:3' TTTCTCTGGCCAAG--TGACACT 5'& |.| || ||||||| &5' -------CTGTCTCTAACTGTGA 3' Herc3 mmu-miR-129-5p beg:505 end:530 pic:3' CGT-TCGGGTCTGGCGTTTTTC 5'& || ||||||| || ||.| .| &5' GCCCAGCCCAGCCCACAGATGG 3' Herc3 mmu-miR-130a beg:747 end:772 pic:3' TACGGGAAAATTG------TAACGTGAC 5'& |||||.| .|||||.| &5' -----CTTTTGAAATGCAAGTTGCATT- 3' Herc3 mmu-miR-135astar beg:892 end:915 pic:3' GCGGTGCCGAGGTT----AGGGATAT 5'& ||. |||| |||.|.| &5' -GCT----CTCCTACTCTTCCTTGT- 3' Herc3 mmu-miR-145 beg:473 end:490 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& |||| |||||| &5' ------TCCTCAGC--ACTGGA- 3' Herc3 mmu-miR-146a beg:319 end:339 pic:3' TTGGGTACC-TTAAGTCAAGAGT 5'& |||| |.| .|||.||| &5' -----ATGGCAGTA-GGTTTTCA 3' Herc3 mmu-miR-146b beg:319 end:339 pic:3' TCGGATACC-TTAAGTCAAGAGT 5'& |||| |.| .|||.||| &5' -----ATGGCAGTA-GGTTTTCA 3' Herc3 mmu-miR-15a beg:377 end:396 pic:3' GTGTTTGGTAATACACGACGAT 5'& ||||| ||||||| &5' -----ACCATGCTTTGCTGCT- 3' Herc3 mmu-miR-15b beg:377 end:396 pic:3' ACATTTGGTACTACACGACGAT 5'& |||||| ||||||| &5' -----ACCATGCTTTGCTGCT- 3' Herc3 mmu-miR-15b beg:906 end:925 pic:3' ACATTTGGTACTAC-ACGACGAT 5'& || || ||||||| &5' ------CCTTGTCTTTGCTGCT- 3' Herc3 mmu-miR-16 beg:378 end:396 pic:3' GCGGTTATAAATGC-ACGACGAT 5'& ||| |.| ||||||| &5' --CCA-----TGCTTTGCTGCT- 3' Herc3 mmu-miR-181a beg:284 end:302 pic:3' TGAGTGGCTGTCGCAACTTACAA 5'& .|||.| .| ||||||| &5' -TTCATC-----TG-TGAATGT- 3' Herc3 mmu-miR-181b beg:282 end:302 pic:3' TGGGTGGCTGTCGTTACTTACAA 5'& || || | .||||||| &5' -----CCTTCATCTGTGAATGT- 3' Herc3 mmu-miR-181c beg:284 end:302 pic:3' TGAGTGGCTGTCCAACTTACAA 5'& .|||.| ||||||| &5' -TTCATCTG-----TGAATGT- 3' Herc3 mmu-miR-181d beg:282 end:302 pic:3' TGGGTGGCTGTTGTTACTTACAA 5'& || || .||||||| &5' -----CCTTCATCTGTGAATGT- 3' Herc3 mmu-miR-1839-5p beg:1223 end:1246 pic:3' GTTCTGGACA-AGATAGATGGAA 5'& .||| || |.|||.||.|| &5' -GAGAAA-GTATTTATTTATCT- 3' Herc3 mmu-miR-184 beg:1002 end:1013 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& |||.|||. &5' -------------CTCTGTCT- 3' Herc3 mmu-miR-188-3p beg:561 end:584 pic:3' ACGTTTGGGACGT----ACACCCTC 5'& || .|.|| ||||||| &5' -GC---TCTTGAGTCTTTGTGGGA- 3' Herc3 mmu-miR-1892 beg:20 end:42 pic:3' TAGG-AGGGAGGGCAGGGGTTTA 5'& |||| |||||.|| ||..| &5' ATCCATCCCTTCCTTCTTC---- 3' Herc3 mmu-miR-1894-3p beg:895 end:921 pic:3' GAGGGA-AGTGGGAGAGGGAACG 5'& ||||. || .|||. |.|||| &5' CTCCTACTCTTCCTTGTCTTTGC 3' Herc3 mmu-miR-1895 beg:931 end:951 pic:3' AGGAGGAGCAGGAGGAGCCCCC 5'& ||| |||| ||||.|| || &5' TCC-CCTCTTCCTTCT-GG--- 3' Herc3 mmu-miR-1897-5p beg:815 end:840 pic:3' GGGGGAGAAA-GAGGT-AGGTTTC 5'& ||||.||||| .||| ||.|. &5' CCCCTTCTTTATTCCTTTCTAG-- 3' Herc3 mmu-miR-1898 beg:228 end:244 pic:3' CTAGGGGACACTTGGAACTGGA 5'& |||.| |||||..| &5' --------GTGGA-CTTGATTT 3' Herc3 mmu-miR-18a beg:1423 end:1449 pic:3' GATAGACGTG-ATCTACGTGG-AAT 5'& |.||||||. ||| || ||| &5' -TGTCTGCATATAGTT-CAATATTA 3' Herc3 mmu-miR-18a beg:756 end:774 pic:3' GATAGACGTGATCTACGTGGAAT 5'& |||| || ||||..|| &5' -----TGCA--AGTTGCATTTT- 3' Herc3 mmu-miR-190 beg:581 end:599 pic:3' TGGATTATATAGTTTGTATAGT 5'& |||| ||| .|||||.|| &5' ACCTT---TAT-GAACATGTC- 3' Herc3 mmu-miR-1907 beg:378 end:397 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& ||| | ||.|||||||| &5' ----CCA--TGCTTTGCTGCTC 3' Herc3 mmu-miR-1907 beg:903 end:926 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& |.||| .||.|||||||. &5' -CTTCCTTG-TCTTTGCTGCTT 3' Herc3 mmu-miR-190b beg:580 end:599 pic:3' TTGGGTTATAGTTTGTATAGT 5'& ||||. ||| .|||||.|| &5' AACCTT-TAT-GAACATGTC- 3' Herc3 mmu-miR-192 beg:600 end:622 pic:3' CCGACAGTTAAG-TATCCAGTC 5'& ||| |.|| |||||||| &5' -GCT-TTAAGGAAATAGGTCA- 3' Herc3 mmu-miR-1927 beg:407 end:427 pic:3' AGTCAGGGATTGTAGGTCTCCAG 5'& |||||||||| |||.||| &5' TCAGTCCCTA-----CAGGGGT- 3' Herc3 mmu-miR-1935 beg:1001 end:1012 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& ||||||.|| &5' -------------CCTCTGTCT 3' Herc3 mmu-miR-1937a beg:138 end:156 pic:3' ACCCCCGAGCAGGCCCTAA 5'& ||. ||.|||.|| &5' ----GGTGTTTCTGGGGTT 3' Herc3 mmu-miR-1943 beg:867 end:889 pic:3' AGGTCCACGGGTCT--AGGAGGGAA 5'& ||||.| ||||||||| &5' -----GTGCTCCCCTCTCCTCCCTT 3' Herc3 mmu-miR-1948 beg:773 end:795 pic:3' GACATGCTCACGAG------ACGGATTT 5'& ||.|. |||||||. &5' ---------TGTTTCCATATTGCCTAAG 3' Herc3 mmu-miR-1948 beg:615 end:640 pic:3' GACA-TGCTCACGA--GACGGATTT 5'& || |.|||||| ||||||.. &5' --GTCATGAGTGCCTACTGCCTGG- 3' Herc3 mmu-miR-195 beg:378 end:396 pic:3' CGGTTATAAAGACACGACGAT 5'& ||| || ||||||| &5' -CCATG----CTTTGCTGCT- 3' Herc3 mmu-miR-195 beg:906 end:925 pic:3' CGGTTATAAAGACACGACGAT 5'& || ||| ||||||| &5' -CCTTG---TCTTTGCTGCT- 3' Herc3 mmu-miR-1953 beg:335 end:353 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& |||.| | ||||||| &5' ----AGCTTTTG---TTTCCCA 3' Herc3 mmu-miR-1956 beg:306 end:327 pic:3' AGGCGA-CTGAGTCGGGACCTGA 5'& ||.||| ||.|.| ||| | &5' TCTGCTGGATTTAA---TGG-C- 3' Herc3 mmu-miR-1957 beg:862 end:881 pic:3' CAGTATACGAGATGGTGAC 5'& || |.||||| || || &5' -TCTTGTGCTCC-CCTCT- 3' Herc3 mmu-miR-1958 beg:842 end:866 pic:3' TGAATGAC-GAAGGTGAAAGGAT 5'& .|| || ||||| |||||.| &5' GCTCTCTTCCTTCC-CTTTCTT- 3' Herc3 mmu-miR-1958 beg:955 end:976 pic:3' TGAATG-ACGAAGGTGAAAGGAT 5'& |.| |||| ||||..|| &5' ---TGCATGCTGT--CTTTTTTA 3' Herc3 mmu-miR-1960 beg:467 end:489 pic:3' TCGGGAGAAGATTGTCGTGACC 5'& .||| || ||||||||| &5' --TCCTACTCCT-CAGCACTGG 3' Herc3 mmu-miR-1967 beg:336 end:364 pic:3' CGTAGAAGAGGGGTCC-TA-GGAGT 5'& || |.| .|.||||| .| ||||| &5' GCTTTTGTTTCCCAGATGTCCCTCA 3' Herc3 mmu-miR-1969 beg:273 end:294 pic:3' TGGGTACAATTTCAGAGGTAGAA 5'& || ||||. ||.||||| &5' --CC-TGTTGTTC-CTTCATCT- 3' Herc3 mmu-miR-196a beg:3 end:19 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& ||||.| .|||||| &5' CCCAGC---------TTACCTA 3' Herc3 mmu-miR-196a beg:472 end:495 pic:3' GGGTTGTTGT-ACTTTGATGGAT 5'& |.| ||.|| ||.|| |.| &5' CTCCTCAGCACTGGAAATGC--- 3' Herc3 mmu-miR-196b beg:3 end:19 pic:3' GGGTTGTTGTCCTTTGATGGAT 5'& ||||.| .|||||| &5' CCCAGC---------TTACCTA 3' Herc3 mmu-miR-1970 beg:1121 end:1144 pic:3' GTTTCGGATAGGGG--TCACTGTGT 5'& |. |.||.| |||||||. &5' ----GTGTGTCTCAAAAGTGACAT- 3' Herc3 mmu-miR-1982.2 beg:410 end:429 pic:3' GACACCCTCTTGTATCCCACT 5'& || ||| .|||||| &5' --GTCCCT--ACA-GGGGTGA 3' Herc3 mmu-miR-1982star beg:343 end:363 pic:3' GGAGGGGTC--CTGGGAGGGTT 5'& .|.||||| | ||||| &5' -TTTCCCAGATGTCCCTC---- 3' Herc3 mmu-miR-1982star beg:525 end:539 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& ||| ||||||| &5' --------GGAA-CTCCCAA 3' Herc3 mmu-miR-199a-5p beg:475 end:489 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& || |.|||||| &5' -----------CTCAGCACTGG- 3' Herc3 mmu-miR-199bstar beg:475 end:489 pic:3' CTTGTCCATCAGATTTGTGACCC 5'& || |.|||||| &5' -----------CTCAGCACTGG- 3' Herc3 mmu-miR-205 beg:1275 end:1296 pic:3' GTCTGAGGC-CACC-TTACTTCCT 5'& ||| || .|||||||| &5' ------CCGAGTCTTGATGAAGGA 3' Herc3 mmu-miR-208a beg:248 end:266 pic:3' TGTTCGAAAAAC-GAGCAGAATA 5'& ||||| .|.||.||| &5' -------TTTTGTTTTGTTTTA- 3' Herc3 mmu-miR-2135 beg:725 end:740 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& |.||. ||||||. &5' ---TTGGT----AGACCTT- 3' Herc3 mmu-miR-2146 beg:726 end:745 pic:3' GTGTACCTTG-GGAAGAGGTG 5'& ||| ||||||..|. &5' ----TGGTAGACCTTCTTTAT 3' Herc3 mmu-miR-215 beg:601 end:623 pic:3' CAGACAGTTTAG-TATCCAGTA 5'& || |.||. ||||||||| &5' --CT-TTAAGGAAATAGGTCAT 3' Herc3 mmu-miR-2183 beg:137 end:159 pic:3' TCCTCCAGT--CCCCAAGTT 5'& ||| ||. ||||||||| &5' AGGT-GTTTCTGGGGTTCAA 3' Herc3 mmu-miR-24 beg:622 end:643 pic:3' GACAAGGACGACTTGACTCGGT 5'& || ||| ||| |||.||| &5' --GTGCCTACTGC-CTGGGCC- 3' Herc3 mmu-miR-24 beg:183 end:204 pic:3' GACAAGGACGACTTG-ACTCGGT 5'& || |.||.. ||||||| &5' --GTG---GTTGGGGATGAGCCA 3' Herc3 mmu-miR-26a beg:414 end:434 pic:3' TCGGATAGGACCTAATGAACTT 5'& |||| | ||.| |||||| &5' --CCTA-CAGGGGTGACTTGA- 3' Herc3 mmu-miR-26b beg:414 end:434 pic:3' TGGATAGGACTTAATGAACTT 5'& |||| | |..| |||||| &5' -CCTA-CAGGGGTGACTTGA- 3' Herc3 mmu-miR-27a beg:1002 end:1024 pic:3' CGCCTTGAATCGG----TGACACTT 5'& || |.| |||||||| &5' ------CTCTGTCTCTAACTGTGAA 3' Herc3 mmu-miR-27b beg:1002 end:1024 pic:3' CGTCTTGAATCGG----TGACACTT 5'& || |.| |||||||| &5' ------CTCTGTCTCTAACTGTGAA 3' Herc3 mmu-miR-297a beg:637 end:661 pic:3' TGTACGT-GTAC---GTGTGTATGTA 5'& || | || |||||||||| &5' ----GCCTCCTGAAACACACATACA- 3' Herc3 mmu-miR-299star beg:720 end:738 pic:3' TACATACACCCTGCCATTTGGT 5'& ||| .||||.||| &5' ------GTGAATTGGTAGACC- 3' Herc3 mmu-miR-302b beg:1014 end:1038 pic:3' GATGATTTTGTACCTTC-GTGAAT 5'& ||. ||||.|| |||| .||| &5' CTGTGAAAATAT-GAAGATACT-- 3' Herc3 mmu-miR-302b beg:1241 end:1261 pic:3' GATGATTTTGTACCTTCGTGAAT 5'& ||||||. ||||.||||| &5' ---CTAAAAT---GAAGTACTTA 3' Herc3 mmu-miR-302d beg:1234 end:1261 pic:3' TGTGAGTTTGTAC--CTTCGTGAAT 5'& .|.|.| ||||.||||| &5' -TATTTATCTAAAATGAAGTACTTA 3' Herc3 mmu-miR-3072star beg:878 end:903 pic:3' GGACGGGAGGGAGCCCCAG-GGA 5'& ||| ||||.|||| | || ||| &5' CCT-CCCTTCCTCTTGCTCTCCT 3' Herc3 mmu-miR-3099 beg:994 end:1020 pic:3' AGGGGTTGGAG--AGAGATCGGAT 5'& |.. |||||| |||||| ||. &5' TTTTAAACCTCTGTCTCTAA-CTG 3' Herc3 mmu-miR-3099 beg:25 end:49 pic:3' AGGGGTTGGAG-AGAGATCGGAT 5'& ||||. |.|| ||| |.||| &5' TCCCTTCCTTCTTCTGTGGCC-- 3' Herc3 mmu-miR-30astar beg:158 end:180 pic:3' CGACGTTTGT-AGGCTGACTTTC 5'& | ||.| ||. |||||| &5' ---GTGAATAGTCTTTCTGAAA- 3' Herc3 mmu-miR-30c-2star beg:892 end:904 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& || |||||.| &5' ----------GC--TCTCCTA- 3' Herc3 mmu-miR-30estar beg:159 end:180 pic:3' CGACATTTGT-AGGCTGACTTTC 5'& ||.||.| ||. |||||| &5' ---GTGAATAGTCTTTCTGAAA- 3' Herc3 mmu-miR-31 beg:882 end:898 pic:3' GTCGATACGGTCGTAGAACGGA 5'& || | ||||||. &5' --------CCTTCCTCTTGCT- 3' Herc3 mmu-miR-31 beg:435 end:454 pic:3' GTCGATACGGTCGTAGAACGGA 5'& ||||.| ||||||| &5' ----TATGTCCCT-TCTTGCC- 3' Herc3 mmu-miR-322 beg:374 end:396 pic:3' AGGTTTTGTACTTAACGACGAC 5'& ||. |||| |||||||| &5' TCTTCACCATGCTTTGCTGCT- 3' Herc3 mmu-miR-322 beg:905 end:925 pic:3' AGGTTTTGTACTT-AACGACGAC 5'& ||| || |||||||| &5' TCCT-----TGTCTTTGCTGCT- 3' Herc3 mmu-miR-330star beg:370 end:392 pic:3' AGAGACGTCCGGGACACGAAACG 5'& |.||| || || |||||||| &5' TTTCTTCA--CCA--TGCTTTGC 3' Herc3 mmu-miR-338-3p beg:1270 end:1296 pic:3' GTTGT--TTTAGTGACTACGACCT 5'& ||.|| .|.|| .||||| ||| &5' CAGCACCGAGTC-TTGATGAAGGA 3' Herc3 mmu-miR-338-3p beg:299 end:318 pic:3' GTTGTTTTAGTGACT-ACGACCT 5'& .| | ||||||| &5' -------GTTGCAATCTGCTGGA 3' Herc3 mmu-miR-342-3p beg:561 end:584 pic:3' TGCCCACGCTAA---AGACACACTCT 5'& || ||| ||||.|| &5' ------GCTCTTGAGTCTTTGTGGGA 3' Herc3 mmu-miR-3473 beg:382 end:402 pic:3' CCGACTCGGT-AGAGAGGT 5'& ||| ||.. |||||.| &5' -GCTTTGCTGCTCTCTTC- 3' Herc3 mmu-miR-3473 beg:836 end:854 pic:3' CCGACT-CGGTAGAGAGGT 5'& ||| || |||||.| &5' -GCTCCTGC--TCTCTTC- 3' Herc3 mmu-miR-361 beg:932 end:954 pic:3' CATGGGGACCTCTAAGACTATT 5'& ||||| |||||.||. &5' ---CCCCTCTTCCTTCTGGTAG 3' Herc3 mmu-miR-370 beg:1081 end:1102 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& ||| |. ||||||| &5' --CAGTGAA-ATTTCAGCAGG- 3' Herc3 mmu-miR-376b beg:279 end:298 pic:3' TTCACCTACAAGG----AGATACTA 5'& |||||| |||.||| &5' -------TGTTCCTTCATCTGTGA- 3' Herc3 mmu-miR-376c beg:1414 end:1427 pic:3' TGCACTTTAAAGGAGATACAA 5'& |..||||||| &5' ----------TTTTCTATGT- 3' Herc3 mmu-miR-376cstar beg:1431 end:1453 pic:3' ATTTGTATCTTCCTT--ATAGGTG 5'& |.|||| |||||| &5' ---ATATAGTTCAATATTATCCA- 3' Herc3 mmu-miR-378 beg:817 end:840 pic:3' GGAAGAC-TGAGGTTCAGGTCA 5'& |||||| |.||| ||.|| &5' CCTTCTTTATTCCTT-TCTAG- 3' Herc3 mmu-miR-423-5p beg:835 end:858 pic:3' TTTCAGAG--CGAGAGACGGGGAGT 5'& || ||| ||||||| .||.|| &5' --AG-CTCCTGCTCTCT-TCCTTC- 3' Herc3 mmu-miR-423-5p beg:389 end:413 pic:3' TTTCAGAGCGAGAGA-----CGGGGAGT 5'& .||||||| |||.|||| &5' -------TGCTCTCTTCCTGGCCTCTCA 3' Herc3 mmu-miR-431 beg:522 end:543 pic:3' ACGTACTGCC--GGACGTTCTGT 5'& ||.|| |. ||||||| &5' -----GATGGAACTCCCAAGACA 3' Herc3 mmu-miR-433 beg:603 end:625 pic:3' TGTGGCTCCTCGGG-TAGTACTA 5'& . |||| . .|||||| &5' ---TTAAGGAAATAGGTCATGA- 3' Herc3 mmu-miR-434-3p beg:137 end:159 pic:3' TCCTCAGCTCACTACCAAGTTT 5'& ||| ||. ||. ||||||| &5' AGGTGTTTC-TGG-GGTTCAA- 3' Herc3 mmu-miR-450a-3p beg:291 end:314 pic:3' TACTTACGTTTCG-TAGGGGTTA 5'& .||||||.. || |||. | &5' GTGAATGTGTTGCAATCTGC--- 3' Herc3 mmu-miR-450b-3p beg:336 end:354 pic:3' TACGTACGTTTTAC-AAGGGTTA 5'& || || ||||||. &5' ------GCTTT-TGTTTCCCAG- 3' Herc3 mmu-miR-450b-3p beg:521 end:539 pic:3' TACGTACGTTTTACA---AGGGTTA 5'& |.||| |||||| &5' ---------AGATGGAACTCCCAA- 3' Herc3 mmu-miR-455star beg:1420 end:1438 pic:3' GCTACATCAGGTTTCCGTGTAT 5'& |||| |||. |||.||| &5' --ATGT-GTCT----GCATATA 3' Herc3 mmu-miR-465a-3p beg:361 end:372 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |.|||||| &5' -------------GTCCTGAT- 3' Herc3 mmu-miR-465b-3p beg:361 end:372 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |.|||||| &5' -------------GTCCTGAT- 3' Herc3 mmu-miR-465c-3p beg:361 end:372 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |.|||||| &5' -------------GTCCTGAT- 3' Herc3 mmu-miR-466d-5p beg:649 end:663 pic:3' GTACATGTACATGCGTGTGTGT 5'& || ||.||||| &5' -----------ACACATACACA 3' Herc3 mmu-miR-466j beg:647 end:672 pic:3' AATGTGTGTACGTGTA--CGTGTGT 5'& |||||||| |||| || |.|| &5' --ACACACATACACAAGAGC-CGCA 3' Herc3 mmu-miR-483star beg:418 end:429 pic:3' TTCTGCCCTCCCCTCCTCACT 5'& |||.|||| &5' -------------AGGGGTGA 3' Herc3 mmu-miR-493 beg:575 end:591 pic:3' GGACCGTGTGTCATCC-TGGAAGT 5'& ||.|| |||||.| &5' -----------GTGGGAACCTTTA 3' Herc3 mmu-miR-497 beg:377 end:396 pic:3' ATGTTTGGTGTCACACGACGAC 5'& ||||. | ||||||| &5' -----ACCATGCTTTGCTGCT- 3' Herc3 mmu-miR-497 beg:906 end:925 pic:3' ATGTTTGGTGTCAC--ACGACGAC 5'& || || ||||||| &5' ------CCTT-GTCTTTGCTGCT- 3' Herc3 mmu-miR-499 beg:1269 end:1289 pic:3' TTTGTAGTGACGTTCAGAATT 5'& .|| ||| |.||||||.| &5' --GCAGCAC--CGAGTCTTGA 3' Herc3 mmu-miR-500 beg:336 end:358 pic:3' ACTTGGGAAC---GGGTCCACGTAA 5'& |.|..||| ||||| ||. &5' --AGCTTTTGTTTCCCAGATGT--- 3' Herc3 mmu-miR-509-5p beg:133 end:155 pic:3' TACTAACGGTGT----AAGACCTCAT 5'& |.|| ||||||.|| &5' ------GTCAAGGTGTTTCTGGGGT- 3' Herc3 mmu-miR-539 beg:359 end:380 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& || || ||| .|||||.| &5' -CAGTCCT--GAT-GTTTCTTC 3' Herc3 mmu-miR-544 beg:445 end:466 pic:3' CTCGAACGATTTTTACGTCTTA 5'& ||||| |||||||| &5' ---CTTGCCCGCCATGCAGAA- 3' Herc3 mmu-miR-574-5p beg:639 end:662 pic:3' TGTGTGAG-----TGTGTGTGTGTGAGT 5'& .| ||| |||||||.|||| &5' --GC-CTCCTGAAACACACATACAC--- 3' Herc3 mmu-miR-664 beg:419 end:440 pic:3' ATCCGACCCCTCAT--TTACTTAT 5'& |||| | .|||.||| &5' ------GGGGTGACTTGATGGATA 3' Herc3 mmu-miR-665 beg:391 end:406 pic:3' TCCCTGGAGTCGGAGGACCA 5'& ||| |.|||||| &5' ------CTCT-CTTCCTGG- 3' Herc3 mmu-miR-666-5p beg:437 end:457 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& | || | || ||||||| &5' ---TGTCCCTTCT-TGCCCGC- 3' Herc3 mmu-miR-668 beg:1121 end:1143 pic:3' CCATCACCCGGCTCGGCTCACTGT 5'& ||| |.| ||||||| &5' ----GTGTGTCTCAAA-AGTGACA 3' Herc3 mmu-miR-669e beg:523 end:543 pic:3' TACTTGTACG-TGTGTGTTCTGT 5'& ||| || | ||||||| &5' ------ATGGAACTCCCAAGACA 3' Herc3 mmu-miR-669n beg:647 end:665 pic:3' TGTGTGTAGGTGTGTGTTTA 5'& ||||| ||.||||||. &5' --ACACA--CATACACAAG- 3' Herc3 mmu-miR-671-5p beg:927 end:949 pic:3' GAGGTC-GGGGAGGTCCCGAAGGA 5'& ||||. ||||||. ||||. &5' CTCCGTTCCCCTCTTC--CTTCT- 3' Herc3 mmu-miR-672 beg:647 end:669 pic:3' AGTGTGTGTCATGTGG--TTGGAGT 5'& ||||||| ||||| |.|| &5' --ACACACA-TACACAAGAGCC--- 3' Herc3 mmu-miR-673-5p beg:281 end:298 pic:3' GAGGTTCCTGGTCTCGACACTC 5'& ||| .|| |||||| &5' -TCCT----TCAT--CTGTGA- 3' Herc3 mmu-miR-677 beg:472 end:490 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& || ||| |||||.| &5' -------CTCCTCAGCACTGGA 3' Herc3 mmu-miR-678 beg:903 end:929 pic:3' GGAGGT-CAGGAACG-TGGCTCTG 5'& |.||| |||.|||| .|. ||| &5' CTTCCTTGTCTTTGCTGCTT-GAC 3' Herc3 mmu-miR-680 beg:341 end:360 pic:3' GGGGGTACAGTC-GTCTACGGG 5'& |||. ||||||.|| &5' ------TGTTTCCCAGATGTCC 3' Herc3 mmu-miR-681 beg:38 end:61 pic:3' TCGACGGACGGTC--GCTCCGAC 5'& |||. |||| .||||||| &5' --CTGTG-GCCACATTGAGGCTG 3' Herc3 mmu-miR-690 beg:158 end:174 pic:3' AAACCAACACTCGGATCGGAAA 5'& |||| |||.|||| &5' -------GTGAA--TAGTCTTT 3' Herc3 mmu-miR-694 beg:321 end:340 pic:3' GAAGTCCGT--TGTAAAAGTC 5'& |||| | .||||||| &5' -----GGCAGTAGGTTTTCAG 3' Herc3 mmu-miR-704 beg:429 end:444 pic:3' GATCCTCGTCT-CGTGTACAGA 5'& || | |.||||| &5' ---------GATGGATATGTC- 3' Herc3 mmu-miR-704 beg:676 end:697 pic:3' GATC-CTCGTCTCGTGTACAGA 5'& .| |.|| |||..||||| &5' --GGCGGGCT--GCATGTGTCT 3' Herc3 mmu-miR-709 beg:837 end:858 pic:3' AGGAGGACG-GAGACGGAGG 5'& ||||||| |||| |||.| &5' --CTCCTGCTCTCTTCCTTC 3' Herc3 mmu-miR-709 beg:28 end:49 pic:3' AGGAGGACGGAGACGGAGG 5'& |.|||| |.||||. || &5' -CTTCCTTCTTCTGTGGCC 3' Herc3 mmu-miR-743a beg:898 end:919 pic:3' AGATGAGTC-GAACCACAGAAAG 5'& |||||| || ||||||| &5' -CTACTCTTCCT---TGTCTTT- 3' Herc3 mmu-miR-743a beg:956 end:973 pic:3' AGATGAGTCGAACCACAGAAAG 5'& || || |||||||. &5' --------GCATGCTGTCTTTT 3' Herc3 mmu-miR-743b-3p beg:956 end:973 pic:3' AGATAAGTCGTACTACAGAAAG 5'& ||||| |||||||. &5' --------GCATGCTGTCTTTT 3' Herc3 mmu-miR-761 beg:912 end:924 pic:3' ACACAGTCAAAGTGGGACGACG 5'& |..|||||| &5' -------------CTTTGCTGC 3' Herc3 mmu-miR-762 beg:495 end:517 pic:3' CGAGACAGGGCCGGGGTCGGGG 5'& ||| |||. | | |||||||| &5' GCT-TGTTGCAG-CCCAGCCC- 3' Herc3 mmu-miR-764-3p beg:390 end:411 pic:3' TGTCAACGGT-GAT--ACCGGAGGA 5'& |||. || |||||||. &5' -----TGCTCTCTTCCTGGCCTCT- 3' Herc3 mmu-miR-764-3p beg:624 end:647 pic:3' TGTCAACGG-TGATA---CCGGAGGA 5'& |||| |||. |||||||| &5' -----TGCCTACTGCCTGGGCCTCCT 3' Herc3 mmu-miR-872star beg:1422 end:1443 pic:3' TCCTCCGATGACGT-TATCAAGT 5'& |. ||||| |||||||| &5' -----GTGTCTGCATATAGTTCA 3' Herc3 mmu-miR-875-3p beg:319 end:340 pic:3' GTATCGGAGTCATAAAAGTCC 5'& ||.|| .|| .||||||| &5' -ATGGCAGTAG-GTTTTCAG- 3' Herc3 mmu-miR-881star beg:158 end:177 pic:3' TCTACACTGACAATAGAGAGAC 5'& |||| .|||.|||| &5' ----GTGAATA--GTCTTTCTG 3' Herc3 mmu-miR-883a-5p beg:399 end:415 pic:3' CATTGACGATGAAGAGAGTCGT 5'& ||| .| |||||||. &5' ----CTG--GC--CTCTCAGT- 3' Herc3 mmu-miR-883a-5p beg:469 end:485 pic:3' CATTGACGATGAAGAGAGTCGT 5'& |||| || ||||||| &5' -------CTAC-TC-CTCAGCA 3' Herc3 mmu-miR-93star beg:1082 end:1101 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& |||| .||||||| &5' -----AGTGAAATTTCAGCAG- 3' Herc3 mmu-miR-883b-5p beg:399 end:415 pic:3' ACTGACGATGGGTAAGAGTCAT 5'& ||. || ||||||| &5' ------CTGGCC--TCTCAGT- 3' Herc3 mmu-miR-712 beg:1279 end:1296 pic:3' CCATGGCGGGCCCACTTCCTC 5'& |.|. | ||||||| &5' ------GTCTTGATGAAGGA- 3' Herc3 mmu-miR-423-5p beg:888 end:910 pic:3' TTTCAGAGCGAGAGAC-GGGGAGT 5'& |||.|||||| |.|.|| &5' ----TCTTGCTCTCCTACTCTTC- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Herc3; mCG_123509 mmu-let-7a 620 641 UGAUAUGU-UGGAUGAUGGAGU- ||: :||||||:||| : --CAUGAGUGCCUACUGCCUGGG Herc3; mCG_123509 mmu-let-7b 454 483 UUGGUGUGUU-------GGAUGAUGGAGU- :|||::||: |||||| ||||| CGCCAUGCAGAACAUUUCCUACU-CCUCAG Herc3; mCG_123509 mmu-let-7c 454 483 UUGGUAUGUU-------GGAUGAUGGAGU- :||||:||: |||||| ||||| CGCCAUGCAGAACAUUUCCUACU-CCUCAG Herc3; mCG_123509 mmu-let-7d 620 639 UGAUACGU-UGGAUGAUGGAGA ||| :||||||:||| --CAUGAGUGCCUACUGCCUG- Herc3; mCG_123509 mmu-let-7e 454 483 -UGAUAUGU----UGGAGGAU--GGAGU- :| ||:|| |::||||| ||||| CGCCAUGCAGAACAUUUCCUACUCCUCAG Herc3; mCG_123509 mmu-let-7g 624 646 UGACAUGUUUGAUGA---UGGAGU ||:| |||:| :|||| --AGUGCCUACUGCCUGGGCCUCC Herc3; mCG_123509 mmu-let-7i 459 483 -UGUCGUGUUU--GAUGAUGGAGU- :||| ||| ||||| ||||| UGCAGAACAUUUCCUACU-CCUCAG Herc3; mCG_123509 mmu-miR-103 362 397 AGUAUCGGGAC--------------AUGUUACGACGA- ||:|||| |:| ||||||| ---CAGUCCUGAUGUUUCUUCACCAUGCUUUGCUGCUC Herc3; mCG_123509 mmu-miR-107 362 397 ACUAUCGGGAC--------------AUGUUACGACGA- ||:|||| |:| ||||||| ---CAGUCCUGAUGUUUCUUCACCAUGCUUUGCUGCUC Herc3; mCG_123509 mmu-miR-124a 678 700 -CCGUAAGUGGCGCACGGAAU- |||: | | :|||:|||: AGGCGGGCUGCAUGUGUCUUGU Herc3; mCG_123509 mmu-miR-127 512 537 -CGGUUCGA--GUCUGCCU--AGGCU ||| ||| ||||:||| ||| AGCCCAGCCCACAGAUGGAACUCCC- Herc3; mCG_123509 mmu-miR-128a 1132 1165 -UUUUCUCUGGCCA-----------AGUGACACU ||||| ||| || ||||||| CAAAAGUGACAUGUUUAACUGCUCAUCACUGUA- Herc3; mCG_123509 mmu-miR-145 191 238 UUCCCUAA--GG-----------ACC---------CUUUUGACCUG :||||| || ||| |::|| ||||| UGGGGAUGAGCCAAAAAAAAAAUUGGCUUUGGUAUGGGAAGUGGACU Herc3; mCG_123509 mmu-miR-149 184 205 CCUCACUU-CUGUGCCUCGGUCU ||||: |: : |||||| -CAGUGGUUGGGGAUGAGCCAA- Herc3; mCG_123509 mmu-miR-15a 379 397 GUGUUUGGUAAUACACGACGAU ||||| ||||||| ----CACCAUGCUUUGCUGCUC Herc3; mCG_123509 mmu-miR-15b 370 397 -ACAUU----UGGUACUACACGACGAU ||| |||||| ||||||| AUGUUUCUUCACCAUGCUUUGCUGCUC Herc3; mCG_123509 mmu-miR-17-3p 620 641 AUGUUCACGGGAGUGACG--UCA |::||||||: ||||| :| CAUGAGUGCCU--ACUGCCUGGG Herc3; mCG_123509 mmu-miR-184 907 937 UGGGAAUAGUCAA--------GAGGCAGGU :||||:|| ||||||:| UUCCUUGUCUUUGCUGCUUGACUCCGUUCC Herc3; mCG_123509 mmu-miR-188 935 961 UGGGAGGUGGU--ACGUUC-CCUAC- |||||: || || || ||||| CCCCUCUUCCUUCUGGUAGUGGAUGC Herc3; mCG_123509 mmu-miR-192 605 623 ACAGUUAAG-UAUCCAGUC |:|| |||||||| -UUUAAGGAAAUAGGUCAU Herc3; mCG_123509 mmu-miR-195 366 397 CGGUUAUAAAGAC----------ACGACGAU |::||:||||| ||||||| CCUGAUGUUUCUUCACCAUGCUUUGCUGCUC Herc3; mCG_123509 mmu-miR-196a 514 538 -GGUUGU-UGU--ACUUUGAUGGAU |||:| ||| ||:|||| || CCCAGCCCACAGAUGGAACUCCCA- Herc3; mCG_123509 mmu-miR-196b 514 538 -GGUUGU-UGUC--CUUUGAUGGAU |||:| |||| |:|||| || CCCAGCCCACAGAUGGAACUCCCA- Herc3; mCG_123509 mmu-miR-214 631 649 -GACGGACAGACACGGACGACA ||||||| |||| ||| ACUGCCUGG----GCCUCCUGA Herc3; mCG_123509 mmu-miR-215 600 624 CAGAC--AGUUUAG-UAUCCAGUA- ||| |:||: ||||||||| -CCUGCUUUAAGGAAAUAGGUCAUG Herc3; mCG_123509 mmu-miR-216b 781 822 AGUGUAAACGGAC----GUC------------UCUAAAGGG ||:| |||||| ||| ||:|||||| CCAUA-UUGCCUAAGAACAGUACAAUUAAUAAAGGUUUCCCC Herc3; mCG_123509 mmu-miR-224 677 700 AUUUGCCUUGGUGAUCACUGAAU- |::||| :|::| ||| |||: CAGGCGG-GCUGCAUGUGUCUUGU Herc3; mCG_123509 mmu-miR-24 635 671 -GACAAGGACGACUUGA------------CUCGGU- ||| ||| ||||| |||||: CCUGGGCCUCCUGAAACACACAUACACAAGAGCCGC Herc3; mCG_123509 mmu-miR-26a 404 435 -CGGA----UAGGA-----CCUAAUGAACUU |||| :||| ||:| |||||| GGCCUCUCAGUCCCUACAGGGGUGACUUGAU Herc3; mCG_123509 mmu-miR-26b 403 435 -UUGGA----UAGGA-----CUUAAUGAACUU ::||| :||| | | |||||| UGGCCUCUCAGUCCCUACAGGGGUGACUUGAU Herc3; mCG_123509 mmu-miR-28 1256 1278 -GAGUUAUCUGACACU-CGAGGAA ||: |||||:||||| || | ACUU-AUAGAUUGUGAUGCAGCA- Herc3; mCG_123509 mmu-miR-300 542 565 CUUCUCUCGAACGGGAAC-GUAU- |||| |||| ||||| |||| AAAGA-AGCUGAGCCUUGUCAUAG Herc3; mCG_123509 mmu-miR-322 672 694 ACAACGUCG---CGAAGUACAAA ||||||| ||| ||||| GGUUGCAGGCGGGCUGCAUGUG- Herc3; mCG_123509 mmu-miR-324-5p 181 200 GUGGUUACGGGAUCCCCUACGC |:||:|| : ||||||| AAUCAGUGGUU--GGGGAUGA- Herc3; mCG_123509 mmu-miR-325 621 641 UGUGAAUGACUCGUGGAUGAU---CC- ||||::||||||: || -------AUGAGUGCCUACUGCCUGGG Herc3; mCG_123509 mmu-miR-326 483 515 -UGACCUCCUU---CC---------CGGGUCUCC |||||| || |||||| CACUGGAAAUGCAUGGCUUGUUGCAGCCCAGC-- Herc3; mCG_123509 mmu-miR-328 609 644 UGCCU---UCCCGU-CUCU-----------CCCGGUC ||| ||| || ||| ||||| -AGGAAAUAGGUCAUGAGUGCCUACUGCCUGGGCCU- Herc3; mCG_123509 mmu-miR-331 396 428 AAGAUCCUAUCCGG------------GUCCCCG- ||| |||| ||||||: CUCUUCCU--GGCCUCUCAGUCCCUACAGGGGUG Herc3; mCG_123509 mmu-miR-335 555 573 UGUAAAAAGCAAUAACGAGAACU- |:|| || |||||||| ------CUUGUCAUAGCUCUUGAG Herc3; mCG_123509 mmu-miR-346 662 687 -UCUC--CGUCCGUGAGCCCGUCUGU |||| |||||: | |||:|:| AAGAGCCGCAGGUUG-CAGGCGGGCU Herc3; mCG_123509 mmu-miR-34b 616 640 GUUAGUCGAUUAAUG--UGACGGAU- ::||| |:| |:| |||||||: AGGUCA--UGAGUGCCUACUGCCUGG Herc3; mCG_123509 mmu-miR-361 931 955 -CAUGGGGACCUCUAAGACUAUU- || ||||| |||||:||: CGUUCCCCUCUUCCUUCUGGUAGU Herc3; mCG_123509 mmu-miR-370 664 687 -UUGG--UCCAAGGUGGGGUCGUCCG- |:|| ||||| || :||:||| GAGCCGCAGGUUGCA----GGCGGGCU Herc3; mCG_123509 mmu-miR-376b 269 299 -UUUCACCU---ACAAGG----AGAUACUA :|:|| |||||| |||:||| CGAGGUACCUGUUGUUCCUUCAUCUGUGAA Herc3; mCG_123509 mmu-miR-380-5p 685 707 CGCGUACA-AGAUACCAGUUGGU- :|||||| ||| ||:|:||| CUGCAUGUGUCUU--GUUAGCCAU Herc3; mCG_123509 mmu-miR-424 484 508 AGGUUU---UGUACUUAACGACGAC |:::| :||||: |||:||| ACUGGAAAUGCAUGGCUUGUUGCA- Herc3; mCG_123509 mmu-miR-433-5p 1135 1166 CUUAUUACUGUCCG-----------AGUGGCAU- |:||||| |: ||||:||| ---AAGUGACAUGUUUAACUGCUCAUCACUGUAU Herc3; mCG_123509 mmu-miR-434-3p 134 160 CCUCAGC-UCACUA-----CCAAGUUU |||| :||| ||||||| -UAGUCAAGGUGUUUCUGGGGUUCAAU Herc3; mCG_123509 mmu-miR-449b 599 639 -GGUCGA-----------UCG----UUACG--UGACGGA- || ||| :|: |:||| ||||||| UCCUGCUUUAAGGAAAUAGGUCAUGAGUGCCUACUGCCUG Herc3; mCG_123509 mmu-miR-455-3p 689 720 UCACAUA----------UAC-GGGCACCUGACGUA |||:| ||| ||||||||:| -AUGUGUCUUGUUAGCCAUGACCCGUGGAUUU--- Herc3; mCG_123509 mmu-miR-464 1425 1466 -AUAGA---GUGUC-------------UUAUUUGAACCAU |:||| :|:|| ||||||:|||||: GUGUCUGCAUAUAGUUCAAUAUUAUCCAAUAAAUUUGGUGU Herc3; mCG_123509 mmu-miR-484 186 204 UAGCCCUCCCCUGACUCGGACU :|| ||||| |||||| -GUGGUUGGGGA-UGAGCCA-- Herc3; mCG_123509 mmu-miR-485-5p 612 646 CUUAAGUAGUGC----------CGG--UCGGAGA ||| :|||:| ||| :||||| AAAUAGGUCAUGAGUGCCUACUGCCUGGGCCUCC Herc3; mCG_123509 mmu-miR-486 399 426 GAGCCCCGUCGAGUCA----UGUCCU- || ||| |||||| |||||: UUCCUGGCCUCUCAGUCCCUACAGGGG Herc3; mCG_123509 mmu-miR-488 622 642 AACUCUCACG-AUAAUAGACCC- |||||| || |: ||||| ---UGAGUGCCUACUGCCUGGGC Herc3; mCG_123509 mmu-miR-488* 538 563 -CUGGUUCUUUG--UCGGAA-AGUU ||| |||||:| |||||| ||| AGACAAAGAAGCUGAGCCUUGUCAU Herc3; mCG_123509 mmu-miR-491 397 422 -GGAGUACCUUCCCA--AGGGGUGA |:|| ||| ||||:|| UCUUCCUGGCCUCUCAGUCCCUACA Herc3; mCG_123509 mmu-miR-494 344 378 UCCAAAGGGC--ACA------------UACAAAGU ||||||| ||| ||||||| -UGUUUCCCAGAUGUCCCUCAGUCCUGAUGUUUCU Herc3; mCG_123509 mmu-miR-495 225 250 -UUCUUCACGUGGUAC-AAACAAA- ::|||||| ||: ||||||| UGGGAAGUGGACUUGAUUUUGUUUU Herc3; mCG_123509 mmu-miR-497 659 690 AUGUU--UGGUGUCACA--------CGACGAC |||| :||:||| ||||| CACAAGAGCCGCAGGUUGCAGGCGGGCUGCA- Herc3; mCG_123509 mmu-miR-500 125 147 -GACUUGGGAACGGGUCCACGUA || |||||| |:| |||||: CCUAAACCCUAGUCAAGGUGUU- Herc3; mCG_123509 mmu-miR-539 66 89 UGUGUGGU-UCCU--AUUAAAGAGG |:|||| :||| |:|||||| -AAUACCAUGGGAAGUGAUUUCUA- Herc3; mCG_123509 mmu-miR-665 633 649 AUUCCCUGGAGUCGGAGGACCA :||| :|||||||| -----UGCCUGGGCCUCCUGA- Herc3; mCG_123509 mmu-miR-666 496 521 -CCGAG-AGUGUCGACACGGG-CGA ||||: |::|||| |||| || UGGCUUGUUGCAGCCCAGCCCAGCC Herc3; mCG_123509 mmu-miR-667 673 697 GAAC--CCGACCCACCGUCCACAGU ||| ||| ||| ||| ||||| GUUGCAGGC-GGGCUGCAUGUGUCU Herc3; mCG_123509 mmu-miR-671 405 433 -GGAG-GUCGGGGAGG-UCCCGAAGGA- |||| |||:|||| :|||: |:| GCCUCUCAGUCCCUACAGGGGUGACUUG Herc3; mCG_123509 mmu-miR-673 267 299 GAGGUUCC-UGGUCUC----------GACACUC ||:||| ||| | |||||| -ACCGAGGUACCUGUUGUUCCUUCAUCUGUGAA Herc3; mCG_123509 mmu-miR-674 388 416 -AUGUGGU--GAGGGU----AGAGUCACG |:| | ||:|| ||||||| UUGCUGCUCUCUUCCUGGCCUCUCAGUC- Herc3; mCG_123509 mmu-miR-676* 1278 1304 CGUUCAGGAU----UCCA-ACAUCUCA |:||||:|: ||| |||||| CCGAGUCUUGAUGAAGGAAUGUAGAU- Herc3; mCG_123509 mmu-miR-679 348 369 UGGUUCU-CAGUGGAGUGUCAGG- || ||| ||| |||| ||||| UCCCAGAUGUC-CCUC--AGUCCU Herc3; mCG_123509 mmu-miR-680 933 962 -GGGGGU--------ACAGUCGUCUACGGG :|||| || :||::||||| UUCCCCUCUUCCUUCUGGUAGUGGAUGCA- Herc3; mCG_123509 mmu-miR-681 664 689 -UCGACGG---ACGGUCGCUCCGAC- ||| || ||| :||| ||||| GAGCCGCAGGUUGCAGGCG-GGCUGC Herc3; mCG_123509 mmu-miR-688 612 642 CUUAUUCA----UCA------GCGGACGCU ||||:|| ||| :||||| | AAAUAGGUCAUGAGUGCCUACUGCCUGGGC Herc3; mCG_123509 mmu-miR-693-3p 44 62 AAUGUCGGUGUAGACUUUCGACG :|||||||: :|:|||| ---UGGCCACAUU--GAGGCUGA Herc3; mCG_123509 mmu-miR-694 317 341 GAAGU--CCGU--UGUAAAAGUC- ||:| |||| | :||||||| AUUUAAUGGCAGUAGGUUUUCAGC Herc3; mCG_123509 mmu-miR-702 663 687 -CUCGCC--CCAUUUCCCACCCGU |||| ||| || |||| AGAGCCGCAGGUUGCAGGCGGGCU Herc3; mCG_123509 mmu-miR-704 670 698 GAUCC-----UCGUCU--CGUGUACAGA- ||| :||:|: |||::||||| -CAGGUUGCAGGCGGGCUGCAUGUGUCUU Herc3; mCG_123509 mmu-miR-705 512 539 ACGGGUGGGGUG--------GAGGGUGG ||||| ||||| |||||| AGCCCAGCCCACAGAUGGAACUCCCAA- Herc3; mCG_123509 mmu-miR-709 627 647 AGGAGGACGGAGACGGAGG- ||| |||||| |||||| GCCUACUGCCUGGGCCUCCU Herc3; mCG_123509 mmu-miR-712* 411 434 GUUGUGGGC---CCCCACUGAGCGU | ||| |||||||||:| -CAGUCCCUACAGGGGUGACUUGA- Herc3; mCG_123509 mmu-miR-714 389 417 -CGCUGGCU----GGCCGG-GAG-CAGC || :|: |:|||| ||| ||| UGCUGCUCUCUUCCUGGCCUCUCAGUCC Herc3; mCG_123509 mmu-miR-718 657 686 GCUGUGGGC-CGGC---------CCGCCUUC |||| | |||| |||||: -UACACAAGAGCCGCAGGUUGCAGGCGGGC- Herc3; mCG_123509 mmu-miR-742 477 503 AAAUGGGUCGU-ACC-------ACCGAAAG |:||||| ||| |||||| ---CCUCAGCACUGGAAAUGCAUGGCUUG- Herc3; mCG_123509 mmu-miR-744 497 521 -CG-ACAA--UCGGGAUCGGGGCGU || |||| ||||| ||||| || GGCUUGUUGCAGCCC-AGCCCAGCC Herc3; mCG_123509 mmu-miR-759 290 315 CAGU--UUUAACAAACGUGAGACG- || :||| ||||| ||||| AUCUGUGAAUGUGUUGCAAUCUGCU Herc3; mCG_123509 mmu-miR-762 392 419 -CGAGAC-AGGGCCGGG--GUCGGGG- ||||| |||:||||: |||:||| UGCUCUCUUCCUGGCCUCUCAGUCCCU Herc3; mCG_123509 mmu-miR-763 384 408 -CGG--UGACCA-AGAAGGGUCGACC ||: :||| ||||||::|| UGCUUUGCUGCUCUCUUCCUGGCC-- Herc3; mCG_123509 mmu-miR-764-3p 613 648 -UGUCA-------ACGG-UGAUA---CCGGAGGA- |:|| |||| |||: |||||||| AAUAGGUCAUGAGUGCCUACUGCCUGGGCCUCCUG Herc3; mCG_123509 mmu-miR-770-3p 505 525 GGUCGAGGUGCAGUCCGGGUGC |||| ||| || |||||| GCAGC-CCAGCCCA-GCCCACA Herc3; mCG_123509 mmu-miR-98 459 483 UUGUUAUGUU--GAAUGAUGGAGU- :||: ||| | |||| ||||| UGCAGAACAUUUCCUACU-CCUCAG Herc3; mCG_123509 mmu-miR-10b 417 424 UGUGUUUA--------------------AGCCAA-GAUGUCCC || || |||||||| CAUGCUUUGCUGCUCUCUUCCUGGCCUCUCAGUCCCUACAGGGG Herc3; mCG_123509 mmu-miR-15a 389 396 GUGUU---------------------UGGUAAUACACGACGAU ||||| ||||||| AUGUCCCUCAGUCCUGAUGUUUCUUCACCAUGCUUUGCUGCUC Herc3; mCG_123509 mmu-miR-15b 389 396 ACAUU---------------------UGGUACUACACGACGAU |||||| ||||||| AUGUCCCUCAGUCCUGAUGUUUCUUCACCAUGCUUUGCUGCUC Herc3; mCG_123509 mmu-miR-192 615 622 AC------------------------AGUUAAG-UAUCCAGUC |:|| |||||||| GGGAACCUUUAUGAACAUGUCCUGCUUUAAGGAAAUAGGUCAU Herc3; mCG_123509 mmu-miR-195 389 396 C------------GGUUAUAAAGAC----------ACGACGAU | ||:||||| ||||||| AUGUCCCUCAGUCCUGAUGUUUCUUCACCAUGCUUUGCUGCUC Herc3; mCG_123509 mmu-miR-195 918 925 C-------------------------GGUUAUAAAGACACGACGAU || ||| ||||||| UCCCUUCCUCUUGCUCUCCUACUCUUCCUUG---UCUUUGCUGCUU Herc3; mCG_123509 mmu-miR-205 1288 1295 --------------------GUCUGAGGC-CACC-UUACUUCCU ||| | ||| || :|||||||| AGUACUUAUAGAUUGUGAUGCAG-CACCGAGUCUUGAUGAAGGAA Herc3; mCG_123509 mmu-miR-215 615 622 ------------------CAG-AC--AGUUUAG-UAUCCAGUA ||| || |:||: ||||||||| GGGAACCUUUAUGAACAUGUCCUGCUUUAAGGAAAUAGGUCAUG Herc3; mCG_123509 mmu-miR-224 425 432 AUUUGCCUU------------------GGUGA--UCACUGAAU |:|| :|||||||: GCUGCUCUCUUCCUGGCCUCUCAGUCCCUACAGGGGUGACUUGA Herc3; mCG_123509 mmu-miR-24 549 556 GACAAGGACGAC---------------------UUGACUCGGU |:||||||| CCCAGCCCACAGAUGGAACUCCCAAGACAAAGAAGCUGAGCCU Herc3; mCG_123509 mmu-miR-297 654 661 -GUACGUGUAC-----------------------GUGUGUAUGUA |||| :|| |||||||||| UCAUGA--GUGCCUACUGCCUGGGCCUCCUGAAACACACAUACAC Herc3; mCG_123509 mmu-miR-297b 654 661 UGUACAAGUAC---------------------------GUGUGUAUGUA ||||| |||||||||| ------UCAUGAGUGCCUACUGCCUGGGCCUCCUGAAACACACAUACAC Herc3; mCG_123509 mmu-miR-302c* 1108 1115 ----------------------GUCGUCCAUUGGGGUACAAUUU ||||||| : ::|||||||: GUGUGCAUUUACAGUGAAAUUUCAGCAGGGGGA-UUAUGUUAAGU Herc3; mCG_123509 mmu-miR-31 447 454 G----------------------UCGAUACGGUCGUAGAACGGA :| ||||:| ||||||| AGUCCCUACAGGGGUGACUUGAUGGAUAUGUCCCU-UCUUGCCC Herc3; mCG_123509 mmu-miR-330 384 391 --------AGAGACGUCCGGGAC--------------ACGAAACG || || ||| :|||| |||||||| CCCAGAUGUCCCU-CAG-UCCUGAUGUUUCUUCACCAUGCUUUGCU Herc3; mCG_123509 mmu-miR-335 564 571 UGUAAAA--------------------AGCAAUAACGAGAACU |:|| || |||||||| GAACUCCCAAGACAAAGAAGCUGAGCCUUGUCAUAGCUCUUGAG Herc3; mCG_123509 mmu-miR-34b 631 638 G--------------------UUAGUCGAUUAAU-GUGACGGAU ::||| |:| :|||||||: AUGUCCUGCUUUAAGGAAAUAGGUCAUG-AGUGCCUACUGCCUGG Herc3; mCG_123509 mmu-miR-370 1095 1102 UUG---------------------GUCCAAGGUGGGGUCGUCCG ||| |: ||||||| UAUCACAUGUGAAGUGUGCAUUUACAGUGAA-AUUUCAGCAGGG Herc3; mCG_123509 mmu-miR-424 389 396 ---------------------AGGUUUUGUACUUAACGACGAC ||: |||| |||||||| AUGUCCCUCAGUCCUGAUGUUUCUUCACCAUGCUUUGCUGCUC Herc3; mCG_123509 mmu-miR-434-3p 152 159 CC----------------UCAGC-UCACUA-----CCAAGUUU |||| :||| ||||||| UUUUGAAUCCUAAACCCUAGUCAAGGUGUUUCUGGGGUUCAAU Herc3; mCG_123509 mmu-miR-494 370 377 UC--------CAAAGGG-C-ACA------------UACAAAGU ||||||| | ||| ||||||| UUCAGCUUUUGUUUCCCAGAUGUCCCUCAGUCCUGAUGUUUCU Herc3; mCG_123509 mmu-miR-497 389 396 AUGUU---------------------UGGUGUCACACGACGAC ||||: | ||||||| AUGUCCCUCAGUCCUGAUGUUUCUUCACCAUGCUUUGCUGCUC Herc3; mCG_123509 mmu-miR-666 450 457 ---------CCGA-GAG-UGUCG--AC--------ACGGGCGA ||: ||: |::| || ||||||| CCCUACAGGGGUGACUUGAUGGAUAUGUCCCUUCUUGCCCGCC Herc3; mCG_123509 mmu-miR-712 1289 1296 CCA--------------------UGG--CGGGCCCACUUCCUC ||| |:|: | ||||||| GUACUUAUAGAUUGUGAUGCAGCACCGAGUCUUGAUGAAGGAA Herc3; mCG_123509 mmu-miR-762 510 517 -----------------------CGAGACAGGGCCGGGGUCGGGG ||| |||: | | |||||||| CUCCUCAGCACUGGAAAUGCAUGGCU-UGUUGCAG-CCCAGCCCA Herc3; mCG_123509 mmu-miR-762 515 522 ------------------CGAGACA----GGGCCGGGGUCGGGG |||: ||| | |||||||| CAGCACUGGAAAUGCAUGGCUUGUUGCAGCCCAG-CCCAGCCCA Herc3; mCG_123509 mmu-miR-764-3p 639 646 ----------UGUCA-------ACGG-UGAUA---CCGGAGGA |:|| |||| |||: |||||||| CUUUAAGGAAAUAGGUCAUGAGUGCCUACUGCCUGGGCCUCCUG Herc3; mCG_123509 mmu-let-7a 619 639 ugauauguuGGAUGAUGGAgu ||||||:||| tcatgagtgCCTACTGCCTgg Herc3; mCG_123509 mmu-let-7b 461 481 uuggUGUGUUGGAUGAUGGAGU |||: |||||| ||||| cagaACATTTCCTACT-CCTCA Herc3; mCG_123509 mmu-let-7d 618 639 ugaUACGU-UGGAUGAUGGAga ||| : :||||||:||| gtcATGAGTGCCTACTGCCTgg Herc3; mCG_123509 mmu-let-7e 455 481 uGAUAUGU----UGGAGGAU--GGAGU | ||:|| |::||||| ||||| gCCATGCAGAACATTTCCTACTCCTCA Herc3; mCG_123509 mmu-let-7g 622 639 ugaCAUGUUUGAUGAUGGAgu ||:| |||||:||| tgaGTGC---CTACTGCCTgg Herc3; mCG_123509 mmu-let-7i 460 481 uGUCGUGUUUGAUGAU--GGAGU ||| || | :| ||| ||||| gCAGAAC-ATTTCCTACTCCTCA Herc3; mCG_123509 mmu-miR-103 375 395 AGUAUCGGGACAUGUUACGACGA || | || || | ||||||| TCTTCACCATG--CTTTGCTGCT Herc3; mCG_123509 mmu-miR-107 368 392 ACUAUCGGGACAUGUUACG--ACGA ||||: ::|| || |||| |||| TGATGTTTCTTCACCATGCTTTGCT Herc3; mCG_123509 mmu-miR-10b 402 424 uguguuuaAGCCA-AGAUGUCCC || || |||||||| ctggcctcTCAGTCCCTACAGGG Herc3; mCG_123509 mmu-miR-124a 679 698 CCGUAAGUGGCGCACGGAAu |||: | | :|||:||| GGCGGGCTGCATGTGTCTTg Herc3; mCG_123509 mmu-miR-127 513 537 CGGUUC--GAGUCUGCCU--AGGcu ||| || | ||||:||| ||| GCCCAGCCCACAGATGGAACTCCca Herc3; mCG_123509 mmu-miR-128a 1133 1165 UUUUCUCUGGCCA-----------AGUGACAcu ||||| ||| || ||||||| AAAAGTGACATGTTTAACTGCTCATCACTGTat Herc3; mCG_123509 mmu-miR-145 212 236 uucCCUAAGGACC---CUUUUGACCUG || || ||| |::|| ||||| attGGCTT--TGGTATGGGAAGTGGAC Herc3; mCG_123509 mmu-miR-149 187 205 cCUCACUUCUGUGCCUCGGUcu |: ||::||: |||||| tGGTTGGGGAT---GAGCCAaa Herc3; mCG_123509 mmu-miR-15a 375 396 guguuUGGUAAUACACGACGAu ||||| | ||||||| tcttcACCATGCTTTGCTGCTc Herc3; mCG_123509 mmu-miR-15b 375 396 acauuUGGUACUACACGACGAu |||||| | ||||||| tcttcACCATGCTTTGCTGCTc Herc3; mCG_123509 mmu-miR-195 905 925 cgguuauAAAGACACGACGAu | ||| ||||||| tcttcctTGTCTTTGCTGCTt Herc3; mCG_123509 mmu-miR-195 380 396 cGGUUAUAAAGACACGACGAu ||| | || ||||||| aCCA----TGCTTTGCTGCTc Herc3; mCG_123509 mmu-miR-196a 519 538 GGUUGUUGUACUUUGAUGGau || |||: |||:|||| || CCCACAG-ATGGAACTCCCaa Herc3; mCG_123509 mmu-miR-196b 515 538 GGUU-GUUGUC--CUUUGAUGGau |||: | |||| |:|||| || CCAGCCCACAGATGGAACTCCCaa Herc3; mCG_123509 mmu-miR-205 1273 1295 GUCUGAGGC-CA-CCUUACUUCCU ||| | ||| || :|||||||| CAG-CACCGAGTCTTGATGAAGGA Herc3; mCG_123509 mmu-miR-214 625 648 gACG---GACAGACACGGACGACa ||| ||| ||| |||| ||| gTGCCTACTGCCTGGGCCTCCTGa Herc3; mCG_123509 mmu-miR-215 602 622 caGACAGUUUAGUAUCCAGUA || | |:: ||||||||| tgCTTTAAGGAAATAGGTCAT Herc3; mCG_123509 mmu-miR-216b 780 820 AGUGUA-AACGGA--C--GUC------------UCUAAAGGG || ||| |||||| | ||| ||:|||||| TC-CATATTGCCTAAGAACAGTACAATTAATAAAGGTTTCCC Herc3; mCG_123509 mmu-miR-224 405 432 auuugccUUGGUGAU-----CACUGAAu |::| ||| ||||||| gcctctcAGTCCCTACAGGGGTGACTTg Herc3; mCG_123509 mmu-miR-24 623 643 gaCAAGGACGACUUGACUCGGu || ||| ||| |||:||| gaGTGCCTACTG-CCTGGGCCt Herc3; mCG_123509 mmu-miR-24 534 556 gacaaggacgaCUU-GACUCGGu ||| ||||||| cccaagacaaaGAAGCTGAGCCt Herc3; mCG_123509 mmu-miR-26a 415 434 cGGAUAGGACCUAAUGAACUu |||| | ||:| |||||| cCCTA-CAGGGGTGACTTGAt Herc3; mCG_123509 mmu-miR-26b 414 434 uuGGAUAGGACUUAAUGAACUu |||| | |::| |||||| tcCCTA-CAGGGGTGACTTGAt Herc3; mCG_123509 mmu-miR-28 1257 1281 GAGUUAUCUGACAC----UCGAGGaa ||: |||||:|||| ||| || CTT-ATAGATTGTGATGCAGCACCga Herc3; mCG_123509 mmu-miR-297 635 661 GUAC---GUGUAC---GUGUGUAUGUa | || | | || |||||||||| CCTGGGCCTCCTGAAACACACATACAc Herc3; mCG_123509 mmu-miR-297b 637 661 uguacaAGUAC---GUGUGUAUGUa || || |||||||||| tgggccTCCTGAAACACACATACAc Herc3; mCG_123509 mmu-miR-302c* 1095 1115 GUCGUCCAUUGGGGUACAAUUu ||||||| :: ::||||||| CAGCAGG-GGGATTATGTTAAg Herc3; mCG_123509 mmu-miR-30e 132 150 aGGUCAGUUCCUACAAAugu |:|||||||| ||||| cCTAGTCAAGG-TGTTTctg Herc3; mCG_123509 mmu-miR-31 434 454 guCGAUACGGUCGUAGAACGGa | ||||:| | ||||||| tgGATATGTC-CCTTCTTGCCc Herc3; mCG_123509 mmu-miR-322 672 694 aCAACGU-CG--CGAAGUACAaa |||||| || ||| ||||| gGTTGCAGGCGGGCTGCATGTgt Herc3; mCG_123509 mmu-miR-324-5p 181 200 gUGGUUACGGGAUCCCCUACgc |:||:|| | ||||||| aATCAGTG--GTTGGGGATGag Herc3; mCG_123509 mmu-miR-325 614 636 ugugaaugACUCGUGGAUGAucc ||||::|||||| ataggtcaTGAGTGCCTACTgcc Herc3; mCG_123509 mmu-miR-326 484 516 UGACCU---CCUUCC---------CGGGUCucc |||||| | | || |||||| ACTGGAAATGCATGGCTTGTTGCAGCCCAGccc Herc3; mCG_123509 mmu-miR-328 608 631 UGCCU---UCCCGUCUCUCCCGGuc | ||| ||| || ||| ||| AAGGAAATAGGTCA-TGAGTGCCta Herc3; mCG_123509 mmu-miR-330 373 391 AGAGACGUCCGGGACACGAAACG |:||| || || |||||||| TTTCTTCA---CC-ATGCTTTGC Herc3; mCG_123509 mmu-miR-331 406 426 aagauccuauccggGUCCCCg |||||| cctctcagtccctaCAGGGGt Herc3; mCG_123509 mmu-miR-335 549 571 uguaaaaAGCAAUAACGAGAACU |:|| || |||||||| ctgagccTTGTCATAGCTCTTGA Herc3; mCG_123509 mmu-miR-346 663 686 UCUC--CGUCCGUGAGCCCGUCUGu |||| |||||: : | |||:|:| AGAGCCGCAGGT-TGCAGGCGGGCt Herc3; mCG_123509 mmu-miR-34b 612 638 gUUAGUC-G-AUUAAUG--UGACGGAu ||| :| | |:| |:| ||||||| aAATAGGTCATGAGTGCCTACTGCCTg Herc3; mCG_123509 mmu-miR-361 932 953 CAUGGGGACCUCUAAGACUAUu || ||||| |||||:|| GTTCCCCTCTTCCTTCTGGTAg Herc3; mCG_123509 mmu-miR-370 1081 1102 uugGUCCAAGGUGGGGUCGUCCg || || |:::||||||| ttaCA-GTGAAATTTCAGCAGGg Herc3; mCG_123509 mmu-miR-370 649 674 UUG-GUCCAAG-G-UGGGGUCGUCCg ||| || | | | | | ||||| AACACACATACACAAGAGCCGCAGGt Herc3; mCG_123509 mmu-miR-376b 273 298 uuucacCUACAAGG----AGAUACUa | |||||| |||:||| gtacctGTTGTTCCTTCATCTGTGAa Herc3; mCG_123509 mmu-miR-380-5p 684 705 CG-CGUACA-AGAUACCAGUUGGU || |||||| ||| | ||:|:||| GCTGCATGTGTCT-T-GTTAGCCA Herc3; mCG_123509 mmu-miR-424 375 396 AGGUUUUGUACUUAACGACGAc ||: | |||| |||||||| TCTTCACCATGCTTTGCTGCTc Herc3; mCG_123509 mmu-miR-424 487 508 aggUUUUGUACUUAACGACGac || :||||: |||:||| ggaAATGCATGGCTTGTTGCag Herc3; mCG_123509 mmu-miR-433-5p 1132 1164 cUUAUUACUGU-C-------CG---AGUGGCAU || |:||||| | || ||||:||| cAAAAGTGACATGTTTAACTGCTCATCACTGTA Herc3; mCG_123509 mmu-miR-434-3p 133 159 ccUCAGCU-CACUA-----CCAAGUUu |||| | ||| | ||||||| ctAGTCAAGGTGTTTCTGGGGTTCAAt Herc3; mCG_123509 mmu-miR-449b 615 637 gguCGAUCGUUAC--GUGACGGA |: | |:|| :||||||| tagGTCATGAGTGCCTACTGCCT Herc3; mCG_123509 mmu-miR-455-3p 667 690 ucacauauACGGGCACCUGACGUA ||| | ||:|||||| ccgcaggtTGCAGGCGGGCTGCAT Herc3; mCG_123509 mmu-miR-464 1442 1464 aUAGAGUGUCUUAUUUGAACCAu || |:|: ||||||:||||| aATATTATCCAATAAATTTGGTg Herc3; mCG_123509 mmu-miR-484 182 205 UAG---CCCUCCCCUGACUCGGacu ||| || ||||| |||||| ATCAGTGGTTGGGGA-TGAGCCaaa Herc3; mCG_123509 mmu-miR-485-5p 623 645 CUUAAGUAGUGCCGG--UCGGAGa ||:| | | || ||| :||||| GAGTGCCT-ACTGCCTGGGCCTCc Herc3; mCG_123509 mmu-miR-488 619 640 aacuCUCAC-GAUAAUAGACCC ||||| ||| |: ||||| tcatGAGTGCCTACTGCCTGGG Herc3; mCG_123509 mmu-miR-488* 539 562 CUGGUUCUUUG--UCGGAA-AGUu ||| |||||:| |||||| ||| GACAAAGAAGCTGAGCCTTGTCAt Herc3; mCG_123509 mmu-miR-491 398 421 GGAGUACC-----UUCCCAAGGGGUGa |:|| ||| || ||||:|| CTTCCTGGCCTCTCAG---TCCCTACa Herc3; mCG_123509 mmu-miR-494 330 350 UCCAAAGGGCACAUACAAAGu ||||||:| | | |||||| AGGTTTTCAGCTTTTGTTTCc Herc3; mCG_123509 mmu-miR-495 226 248 uuCUUCACGUGGUAC--AAACAAA |||||| ||: || ||||||| ggGAAGTGGACT-TGATTTTGTTT Herc3; mCG_123509 mmu-miR-497 375 396 auguuUGGUGUCACACGACGAc ||||:: | ||||||| tcttcACCATGCTTTGCTGCTc Herc3; mCG_123509 mmu-miR-497 668 690 auGUUUGGUGU-CACACGACGac ||:::::|| | | ||||| cgCAGGTTGCAGGCGGGCTGCat Herc3; mCG_123509 mmu-miR-500 126 147 GACUUGGGAACGGGUCCACgua || |||||| |:| ||||| CTAAACCCTAGTCAAGGTGttt Herc3; mCG_123509 mmu-miR-539 65 89 UGUGUGGU-UCCU--AUUAAAGAgg | |:|||| :||| |:|||||| AAATACCATGGGAAGTGATTTCTat Herc3; mCG_123509 mmu-miR-665 628 649 auucccuGGAGUCGGAGGACca ||| :|||||||| cctactgCCTGGGCCTCCTGaa Herc3; mCG_123509 mmu-miR-666 437 457 ccgAGAGUGUCGACACGGGCGa | || | || ||||||| ataTGTCCCTTCT-TGCCCGCc Herc3; mCG_123509 mmu-miR-666 497 520 CCGAG-AGUGUCGACACGGG-CGa ||||: |::|||| |||| || GGCTTGTTGCAGCCCAGCCCAGCc Herc3; mCG_123509 mmu-miR-671 386 411 GGAG-GUCG-GGGAGGUCCCGAAGga |:|: | || |:||:| ||| || CTTTGCTGCTCTCTTCCTGGCCTCtc Herc3; mCG_123509 mmu-miR-673 266 298 gaGGUUCC-UGGUC----------UCGACACUc ||:||| ||| | | |||||| aaCCGAGGTACCTGTTGTTCCTTCATCTGTGAa Herc3; mCG_123509 mmu-miR-674 392 416 AUGUGGUGAGG---GUAGAGUCAcg |:| |: :||| | ||||||| TGCTCTCTTCCTGGCCTCTCAGTcc Herc3; mCG_123509 mmu-miR-676* 1278 1304 cGUUCAGGA----UUCC-AACAUCUca |:||||:| |||| |||||| cCGAGTCTTGATGAAGGAATGTAGAtt Herc3; mCG_123509 mmu-miR-680 943 962 GGGGGUACAGUCGUCUACGgg ||::| || :||::||||| CCTTC-TGGTAGTGGATGCat Herc3; mCG_123509 mmu-miR-681 665 687 UCGACG---GACGGUCGCUCCGAC ||| || :||| :||| ||||| AGCCGCAGGTTGCAGGCG-GGCTG Herc3; mCG_123509 mmu-miR-688 619 641 cuUAUUCAUCAG----CGGACGCu ||:||| | | ||||| | tcATGAGT-GCCTACTGCCTGGGc Herc3; mCG_123509 mmu-miR-693-3p 41 61 aAUGUCGGUGUAGACUUUCGACg |:::|||||||: :|:|||| cTGTGGCCACATT--GAGGCTGa Herc3; mCG_123509 mmu-miR-702 664 686 CUCGCC--CCAUUUCCCACCCGu |||| | ||| : || |||| GAGCCGCAGGTTGCAGGCGGGCt Herc3; mCG_123509 mmu-miR-704 676 696 gaUCCUCGUCUCGUGUACAGA ||| | : |||::||||| gcAGGCGGGCTGCATGTGTCT Herc3; mCG_123509 mmu-miR-705 512 539 aCGGGUGGGGUG--------GAGGGUgg ||||| ||||| |||||| aGCCCAGCCCACAGATGGAACTCCCAag Herc3; mCG_123509 mmu-miR-709 620 639 aggaggACGGA-GACGGAgg ||||| |||||| catgagTGCCTACTGCCTgg Herc3; mCG_123509 mmu-miR-712 1274 1296 cCAUGG--CGGGCCCACUUCCUc | ||| |:|: | ||||||| aGCACCGAGTCTTGATGAAGGAa Herc3; mCG_123509 mmu-miR-712* 411 434 GUUGUGG--GCCCCCACUGAGCgu ||:: || | |||||||||:| CAGTCCCTACAGGGGTGACTTGat Herc3; mCG_123509 mmu-miR-714 393 416 CGCUGGCUGGCCGGGAG---CAGc || :| || | |||| ||| GCTCTCTTCCTGGCCTCTCAGTCc Herc3; mCG_123509 mmu-miR-718 663 686 gCU-GUGGGCCGGC--CCGCCuuc || | | ||::| ||||| aGAGCCGCAGGTTGCAGGCGGgct Herc3; mCG_123509 mmu-miR-742 474 503 aaAUGGGUCGU-ACC-------ACCGAAag | |:||||| ||| |||||| acTCCTCAGCACTGGAAATGCATGGCTTgt Herc3; mCG_123509 mmu-miR-744 498 520 CG-ACAA--UCGGGAUCGGGGCGu || |||| ||||| ||||| || GCTTGTTGCAGCCC-AGCCCAGCc Herc3; mCG_123509 mmu-miR-759 294 313 CAGUUUUAACA-AACGUGAGACG || || ||| ||||| ||||| GTGAA---TGTGTTGCAATCTGC Herc3; mCG_123509 mmu-miR-762 498 517 CGAGACAGGGCCGGGGUCGGGg ||| |||: | | |||||||| GCT-TGTTGCAG-CCCAGCCCa Herc3; mCG_123509 mmu-miR-762 393 417 CGAGA-CAGGGCCG--GGGUCGGGG ||||| |||:||| |:|||:||| GCTCTCTTCCTGGCCTCTCAGTCCC Herc3; mCG_123509 mmu-miR-763 366 389 cGGUGACCAAGAAG-GGU-CGAcc |:: || |||||| ||| ||| cCTGATGTTTCTTCACCATGCTtt Herc3; mCG_123509 mmu-miR-764-3p 622 646 ugUCAACGG-UGAU--A-CCGGAGGA || |||| |||: | |||||||| tgAG-TGCCTACTGCCTGGGCCTCCT

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Herc3 RAID00070994 mmu-miR-1192 miRNA MIMAT0005850 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00110252 mmu-miR-30e-5p miRNA MIMAT0000248 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00118819 mmu-miR-6986-3p miRNA MIMAT0027875 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00155258 mmu-miR-340-5p miRNA MIMAT0004651 Herc3 mRNA 73998 Prediction 0.2202 Herc3 RAID00241452 mmu-miR-344b-3p miRNA MIMAT0014926 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00244725 mmu-miR-489-3p miRNA MIMAT0003112 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00284900 mmu-miR-712-5p miRNA MIMAT0003502 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00286721 mmu-miR-6418-3p miRNA MIMAT0025174 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00307841 mmu-miR-448-3p miRNA MIMAT0001533 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00309440 mmu-miR-5619-3p miRNA MIMAT0022366 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00335164 mmu-miR-28a-5p miRNA MIMAT0000653 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00356120 mmu-miR-144-3p miRNA MIMAT0000156 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00360865 mmu-miR-7647-5p miRNA MIMAT0029796 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00383754 mmu-miR-872-3p miRNA MIMAT0004935 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00387927 mmu-miR-1950 miRNA MIMAT0009417 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00406496 mmu-miR-381-3p miRNA MIMAT0000746 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00501087 mmu-miR-6918-5p miRNA MIMAT0027736 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00589258 mmu-miR-429-3p miRNA MIMAT0001537 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00600947 mmu-miR-592-5p miRNA MIMAT0003730 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00649260 mmu-miR-451a miRNA MIMAT0001632 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00676119 mmu-miR-15a-5p miRNA MIMAT0000526 Herc3 mRNA 73998 NGS (Next Generation Sequencing)//Prediction 0.6478 Herc3 RAID00678006 mmu-miR-367-3p miRNA MIMAT0003181 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00684771 mmu-miR-3105-5p miRNA MIMAT0014941 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00711510 mmu-miR-451b miRNA MIMAT0025178 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00749613 mmu-miR-7b-5p miRNA MIMAT0000678 Herc3 mRNA 73998 NGS (Next Generation Sequencing) 0.5483 Herc3 RAID00761760 mmu-miR-302b-3p miRNA MIMAT0003374 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00767752 mmu-miR-6971-3p miRNA MIMAT0027845 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00790265 mmu-miR-7019-3p miRNA MIMAT0027943 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00792446 mmu-miR-7042-5p miRNA MIMAT0027988 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00798539 mmu-miR-32-3p miRNA MIMAT0017050 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00800354 mmu-miR-8113 miRNA MIMAT0031419 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00804244 mmu-miR-181d-5p miRNA MIMAT0004324 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00826089 mmu-miR-421-3p miRNA MIMAT0004869 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00848234 mmu-miR-193b-3p miRNA MIMAT0004859 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00850663 mmu-miR-7020-5p miRNA MIMAT0027944 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00866054 mmu-miR-7057-5p miRNA MIMAT0028018 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00874109 mmu-miR-495-3p miRNA MIMAT0003456 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00877467 mmu-miR-335-5p miRNA MIMAT0000766 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00897761 mmu-miR-6947-3p miRNA MIMAT0027795 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00951084 mmu-miR-192-5p miRNA MIMAT0000517 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00958437 mmu-miR-195a-5p miRNA MIMAT0000225 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID00988843 mmu-miR-23b-3p miRNA MIMAT0000125 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01083455 mmu-miR-217-5p miRNA MIMAT0000679 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01194542 mmu-miR-7012-5p miRNA MIMAT0027928 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01212636 mmu-miR-291a-3p miRNA MIMAT0000368 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01230371 mmu-miR-6946-5p miRNA MIMAT0027792 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01244135 mmu-miR-3112-5p miRNA MIMAT0014955 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01248757 mmu-miR-497a-5p miRNA MIMAT0003453 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01363367 mmu-miR-6976-5p miRNA MIMAT0027854 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01369867 mmu-miR-295-3p miRNA MIMAT0000373 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01379663 mmu-miR-361-5p miRNA MIMAT0000704 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01498145 mmu-miR-302a-3p miRNA MIMAT0000380 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01539867 mmu-miR-6999-5p miRNA MIMAT0027900 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01552746 mmu-miR-488-3p miRNA MIMAT0003450 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01587202 mmu-miR-193a-3p miRNA MIMAT0000223 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01593179 mmu-miR-30c-5p miRNA MIMAT0000514 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01609248 mmu-miR-374b-5p miRNA MIMAT0003727 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01656380 mmu-miR-181b-5p miRNA MIMAT0000673 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01684354 mmu-miR-743b-3p miRNA MIMAT0004840 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01703612 mmu-miR-494-3p miRNA MIMAT0003182 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01751069 mmu-miR-200b-3p miRNA MIMAT0000233 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01785540 mmu-miR-127-3p miRNA MIMAT0000139 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01792859 mmu-miR-139-5p miRNA MIMAT0000656 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01906202 mmu-miR-126a-3p miRNA MIMAT0000138 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01911912 mmu-miR-302d-3p miRNA MIMAT0003377 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID01934975 mmu-miR-205-5p miRNA MIMAT0000238 Herc3 mRNA 73998 Prediction 0.2381 Herc3 RAID02014244 mmu-miR-92a-3p miRNA MIMAT0000539 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02042786 mmu-miR-3552 miRNA MIMAT0035715 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02052642 mmu-miR-325-3p miRNA MIMAT0004640 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02102341 mmu-miR-590-3p miRNA MIMAT0004896 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02154902 mmu-miR-23a-3p miRNA MIMAT0000532 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02154939 mmu-miR-743a-3p miRNA MIMAT0004238 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02218618 mmu-miR-206-3p miRNA MIMAT0000239 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02260819 mmu-miR-6967-5p miRNA MIMAT0027836 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02329085 mmu-miR-370-3p miRNA MIMAT0001095 Herc3 mRNA 73998 Prediction 0.2202 Herc3 RAID02364903 mmu-miR-30f miRNA MIMAT0025179 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02380270 mmu-miR-194-5p miRNA MIMAT0000224 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02383971 mmu-miR-30b-5p miRNA MIMAT0000130 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02393166 mmu-miR-215-5p miRNA MIMAT0000904 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02405058 mmu-miR-382-3p miRNA MIMAT0004691 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02408440 mmu-miR-149-3p miRNA MIMAT0016990 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02486503 mmu-miR-6929-5p miRNA MIMAT0027758 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02501890 mmu-mir-325 miRNA MI0000597 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02510635 mmu-miR-138-5p miRNA MIMAT0000150 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02545627 mmu-miR-320-3p miRNA MIMAT0000666 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02587317 mmu-miR-7054-5p miRNA MIMAT0028012 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02594740 mmu-miR-7016-5p miRNA MIMAT0027936 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02613041 mmu-miR-708-5p miRNA MIMAT0004828 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02827540 mmu-miR-322-5p miRNA MIMAT0000548 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02835226 mmu-miR-363-3p miRNA MIMAT0000708 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02842132 mmu-miR-466l-3p miRNA MIMAT0005830 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02940630 mmu-miR-1a-3p miRNA MIMAT0000123 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID02985589 mmu-miR-147-5p miRNA MIMAT0017269 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03046598 mmu-miR-384-5p miRNA MIMAT0004745 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03076650 mmu-miR-16-5p miRNA MIMAT0000527 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03157982 mmu-miR-329-5p miRNA MIMAT0017032 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03158379 mmu-miR-181a-5p miRNA MIMAT0000210 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03168830 mmu-miR-425-5p miRNA MIMAT0004750 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03169511 mmu-miR-302a-5p miRNA MIMAT0004579 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03194905 mmu-miR-128-3p miRNA MIMAT0000140 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03270462 mmu-miR-6959-5p miRNA MIMAT0027818 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03286834 mmu-miR-376c-3p miRNA MIMAT0003183 Herc3 mRNA 73998 Prediction 0.2381 Herc3 RAID03321506 mmu-miR-30a-5p miRNA MIMAT0000128 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03336575 mmu-miR-24-3p miRNA MIMAT0000219 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03345076 mmu-miR-8119 miRNA MIMAT0031425 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03349736 mmu-miR-30d-5p miRNA MIMAT0000515 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03442230 mmu-miR-181c-5p miRNA MIMAT0000674 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03514976 mmu-miR-200c-3p miRNA MIMAT0000657 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03522663 mmu-miR-410-3p miRNA MIMAT0001091 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03572569 mmu-miR-8097 miRNA MIMAT0031399 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03645890 mmu-miR-1943-5p miRNA MIMAT0009408 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03670804 mmu-miR-294-3p miRNA MIMAT0000372 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03714808 mmu-miR-544-3p miRNA MIMAT0004941 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03719162 mmu-miR-31-5p miRNA MIMAT0000538 Herc3 mRNA 73998 Prediction 0.2202 Herc3 RAID03777135 mmu-miR-15b-5p miRNA MIMAT0000124 Herc3 mRNA 73998 Prediction 0.2202 Herc3 RAID03793809 mmu-miR-27a-3p miRNA MIMAT0000537 Herc3 mRNA 73998 Prediction 0.2202 Herc3 RAID03864093 mmu-miR-27b-3p miRNA MIMAT0000126 Herc3 mRNA 73998 Prediction 0.2202 Herc3 RAID03865730 mmu-miR-543-3p miRNA MIMAT0003168 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03920367 mmu-miR-1298-3p miRNA MIMAT0014810 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID03962028 mmu-miR-299a-3p miRNA MIMAT0004577 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID04003701 mmu-miR-496a-3p miRNA MIMAT0003738 Herc3 mRNA 73998 Prediction 0.1828 Herc3 RAID04026105 mmu-miR-7058-5p miRNA MIMAT0028020 Herc3 mRNA 73998 Prediction 0.1828