DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT579061 mmu-miR-297a-5p Mus musculus Cpne9 211232 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT604200 mmu-miR-693-5p Mus musculus Cpne9 211232 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT579062 mmu-miR-297b-5p Mus musculus Cpne9 211232 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT604202 mmu-miR-674-5p Mus musculus Cpne9 211232 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT579064 mmu-miR-804 Mus musculus Cpne9 211232 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT579063 mmu-miR-297c-5p Mus musculus Cpne9 211232 Mus musculus HITS-CLIP Functional MTI (Weak) 25083871 MIRT604201 mmu-miR-3473d Mus musculus Cpne9 211232 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004519 mmu-let-7g* 211232 Cpne9 cguucCGUCACCGGACAUGUCa |:| | :|||||||| acuguGUACUCAUCUGUACAGc 2 18 648 669 [mm9:6:113255263-113255284:+] 0.5000 153 7 -16.22 -0.2223 MIMAT0004519 mmu-let-7g* 211232 Cpne9 cgUUCCGUCACCGGACAUGUCa ||||: || ||||||| ugAAGGUUCAGG--UGUACAGc 2 21 627 646 [mm9:6:113255242-113255261:+] 0.5000 149 7 -16.47 -0.1730 MIMAT0004520 mmu-let-7i* 211232 Cpne9 ucguuccgucaucgaACGCGUc |||||| ugaauccagacuucgUGCGCAa 2 8 441 462 [mm9:6:113233375-113233396:+] 0.6685 120 6 -11.49 -0.1592 MIMAT0004527 mmu-miR-124* 211232 Cpne9 uaguuccaggcGACACUUGUGc || ||||||| uguuauacauaCU-UGAACACu 2 12 720 740 [mm9:6:113255335-113255355:+] 0.5036 141 7 -9.06 -0.9952 MIMAT0000137 mmu-miR-126-5p 211232 Cpne9 gcGCAUG-GUUUUCAUUAUUAc :|||| :| | ||||||| agUGUACUUAUAUAUAAUAAUa 2 20 513 534 [mm9:6:113255128-113255149:+] 0.5000 154 7 -11.02 -1.2320 MIMAT0000143 mmu-miR-9* 211232 Cpne9 ugaaagccaaUAGAUCGAAAUa | ||||||||| accccaaaagAGCUAGCUUUAa 2 13 794 815 [mm9:6:113255409-113255430:+] 0.5036 152 7 -11.46 -0.5793 MIMAT0000152 mmu-miR-140* 211232 Cpne9 ggcaccaaGAUGGGACACCAu | || ||||||| cccagcaaCCACACUGUGGUu 2 14 435 455 [mm9:6:113255050-113255070:+] 0.5000 149 7 -15.73 -0.2601 MIMAT0000218 mmu-miR-24-1* 211232 Cpne9 ugacuauAG-UCGAGU--CAUCCGUg || || || ||||||| cacaaguUCAAGGCCAGUGUAGGCAa 2 17 852 877 [mm9:6:113255467-113255492:+] 0.5002 142 7 -15.91 -0.6253 MIMAT0004572 mmu-miR-290-3p 211232 Cpne9 ccCGAAUUUUGAUC-CG-CCG-UGAAa |:| ||::| || |: ||| |||| aaGUUCAAGGCCAGUGUAGGCAACUUa 2 23 855 881 [mm9:6:113255470-113255496:+] 0.5002 124 0 -14.41 -0.4113 MIMAT0000370 mmu-miR-292-3p 211232 Cpne9 ugUGAGUUUUGG--ACCGCCG-UGAAa ::||||::|| || ||| |||| aaGUUCAAGGCCAGUGUAGGCAACUUa 2 23 855 881 [mm9:6:113255470-113255496:+] 0.5002 129 0 -19.50 -0.4144 MIMAT0000375 mmu-miR-297a 211232 Cpne9 uguacGUGU-ACGU--GUGUAUGUa :||| ||:| |||||||| acagcUACAGUGUACUCACAUACAu 2 18 665 689 [mm9:6:113255280-113255304:+] 0.5000 155 7 -19.59 -0.6185 MIMAT0004579 mmu-miR-302a* 211232 Cpne9 cgUUCAUGUUGGUGCAAAUUCa || || | |: |||||| auAAAUAAAUAAAUCUUUAAGa 2 21 693 714 [mm9:6:113255308-113255329:+] 0.5000 124 6 -4.86 -0.3594 MIMAT0005440 mmu-miR-24-2* 211232 Cpne9 ugaCAAAGUCGAGU--CAUCCGUg ||| || || ||||||| caaGUUCAAGGCCAGUGUAGGCAa 2 20 854 877 [mm9:6:113255469-113255492:+] 0.5002 150 7 -16.77 -0.6216 MIMAT0004647 mmu-miR-338-5p 211232 Cpne9 gugagucgugguccUAUAACAa ||||||| auauaaaauuucaaAUAUUGUa 2 9 337 358 [mm9:6:113254952-113254973:+] 0.5575 140 7 -5.75 -1.1720 MIMAT0004656 mmu-miR-345-3p 211232 Cpne9 cagaGGUC-UGGG--GAUCAAGUCc ||:| :||| : ||||||| cgugCCGGUGCCCAGUCAGUUCAGg 2 19 229 253 [mm9:6:113232529-113232535,113232955-113232972:+] 0.5735 148 7 -27.57 -0.1788 MIMAT0000605 mmu-miR-350 211232 Cpne9 cuUUCACAUACCCGA-AACACUu || | | |||| |||||| aaAAAAGAAACGGCUGUUGUGAu 2 21 928 950 [mm9:6:113255543-113255565:+] 0.5002 124 6 -12.95 -0.5750 MIMAT0004660 mmu-miR-19a* 211232 Cpne9 caucacguugauacgUUUUGAu |||||| aaauaaaucuuuaagAAAACUu 2 8 699 720 [mm9:6:113255314-113255335:+] 0.5018 120 6 -4.89 -0.1378 MIMAT0004691 mmu-miR-382* 211232 Cpne9 uuUUUCACAACAGG-CACU-UACu || |||| | |: |||| ||| aaAACGUGUGGGCUGGUGAGAUGg 2 21 361 384 [mm9:6:113254976-113254999:+] 0.5287 127 0 -14.56 -0.1598 MIMAT0003409 mmu-miR-467a 211232 Cpne9 gcGUAUAUGU-ACGUCCG-UGAAu || : || ||:|||| |||| uuCAAGGCCAGUGUAGGCAACUUa 2 21 858 881 [mm9:6:113255473-113255496:+] 0.5002 123 0 -17.24 -0.4113 MIMAT0002109 mmu-miR-468 211232 Cpne9 guCUGUGUGCGUGUAGUCAGUAu |:| ||: :: | ||||||| uuGGC-CAU-UGGACCAGUCAUg 2 22 150 170 [mm9:6:113232450-113232470:+] 0.5869 145 7 -17.18 -0.1478 MIMAT0003127 mmu-miR-484 211232 Cpne9 uagccCUCCC-CUGACUCGGACu ||||| | ||||||| agacuGAGGGACCCAGAGCCUGg 2 18 235 257 [mm9:6:113254850-113254872:+] 0.5458 152 7 -24.42 -0.1494 MIMAT0003166 mmu-miR-546 211232 Cpne9 cugAGGCACGGUGGUa ||| ||||||| gcgUCCCGGCCACCAa 2 14 196 211 [mm9:6:113232496-113232511:+] 0.6522 149 7 -19.15 -0.5217 MIMAT0003185 mmu-miR-369-5p 211232 Cpne9 cgcUUAUAU-UGUGCCAGCU-AGa :||:|: ||| ||||| || uucGAUGUGUACAACGUCGACUCu 2 20 506 529 [mm9:6:113233440-113233447,113233940-113233955:+] 0.6580 122 0 -18.14 -0.6256 MIMAT0003186 mmu-miR-369-3p 211232 Cpne9 uuUCUAGUUGGUACAU-AAUAa | | | || :|||| |||| agACAGCUACAGUGUACUUAUa 2 20 503 524 [mm9:6:113255118-113255139:+] 0.5000 123 0 -9.28 -1.0365 MIMAT0003373 mmu-miR-302b* 211232 Cpne9 ucuuucGUAAGGG--UACAAUUUCa || | |: | ||||||| ucuaccCACUGCUGGAAGUUAAAGg 2 18 40 64 [mm9:6:113254655-113254679:+] 0.5352 144 7 -10.28 -0.1214 MIMAT0003375 mmu-miR-302c* 211232 Cpne9 cguccauUGGGGUACAAUUUCg :|: | ||||||| acccacuGCUGGAAGUUAAAGg 2 16 43 64 [mm9:6:113254658-113254679:+] 0.5352 143 7 -10.59 -0.1239 MIMAT0004822 mmu-miR-770-5p 211232 Cpne9 gcaCCGGGUCUGUGCACCACGa || || |:: ||||||| gucGGACCCCAUG-GUGGUGCu 2 20 352 372 [mm9:6:113233071-113233081,113233190-113233199:+] 0.6066 149 7 -23.54 -0.2280 MIMAT0003736 mmu-miR-670 211232 Cpne9 aagUGGU--GUAU-GUGAGUC-CCUa |||| |||: | ||||| ||| uggACCAGUCAUGUCUCUCAGCGGAg 2 20 158 183 [mm9:6:113232458-113232483:+] 0.5869 125 0 -19.17 -0.1650 MIMAT0003449 mmu-miR-488* 211232 Cpne9 aacUCUCA--CGAU-AAUAGACCc || || || | |||||||| gccAGUGUAGGCAACUUAUCUGGa 2 19 864 887 [mm9:6:113255479-113255502:+] 0.5002 152 7 -12.45 -0.6354 MIMAT0003462 mmu-miR-684 211232 Cpne9 aacugaacuuccCUUUUGa |||||| auaaaucuuuaaGAAAACu 2 8 701 719 [mm9:6:113255316-113255334:+] 0.5018 120 6 -6.33 -0.1329 MIMAT0003464 mmu-miR-686 211232 Cpne9 agaaguggcagacccUUCGUUa |||||| uauuucuuugaggaaAAGCAAa 2 8 476 497 [mm9:6:113233410-113233431:+] 0.6832 120 6 -10.88 -0.1101 MIMAT0005448 mmu-miR-467b 211232 Cpne9 guauaugUACGUCCG-UGAAUg :||:|||| ||||| aaggccaGUGUAGGCAACUUAu 2 15 861 882 [mm9:6:113255476-113255497:+] 0.5002 126 0 -17.59 -0.2280 MIMAT0003480 mmu-miR-297b-5p 211232 Cpne9 uguacaaGUACGUGUGUAUGUa ::| | |||||||| gcuacagUGUACUCACAUACAu 2 16 668 689 [mm9:6:113255283-113255304:+] 0.5000 151 7 -14.96 -0.6148 MIMAT0003495 mmu-miR-705 211232 Cpne9 acGGGUGGGGUGGA-GGGUGg |::| ||:::|| ||||| ugCUUA-CCUGUCUACCCACu 2 19 30 49 [mm9:6:113254645-113254664:+] 0.5441 120 0 -24.74 -0.1082 MIMAT0003504 mmu-miR-713 211232 Cpne9 cgacacacggaAGUCACGu ||||||| aucuagguugaUCAGUGCu 2 9 97 115 [mm9:6:113254712-113254730:+] 0.5352 140 7 -13.48 -0.3454 MIMAT0003505 mmu-miR-714 211232 Cpne9 cgCUGGCU-GGCCGGGAG-CAGc || :|| |: |||||| ||| caGAAUGAGCUAGCCCUCUGUCc 2 20 276 298 [mm9:6:113232995-113233017:+] 0.5362 126 0 -21.04 -0.3578 MIMAT0003510 mmu-miR-717 211232 Cpne9 ucucuuccauAGAGACAGACUc | | ||||||| acccucuucuUGUGUGUCUGAa 2 13 482 503 [mm9:6:113255097-113255118:+] 0.5000 144 7 -11.25 -0.5006 MIMAT0004837 mmu-miR-615-5p 211232 Cpne9 cuAGGCUCGUGGCCCCUGGGGg ||| || :| ||||||| ucUCCAAG--UC--GGACCCCa 2 21 345 362 [mm9:6:113233064-113233081:+] 0.5776 142 7 -19.21 -0.3618 MIMAT0004857 mmu-miR-147 211232 Cpne9 aucgUCUUCGUAA---AGGCGUGUg |||: |: | |||||||| ggagAGAGCCGCUGCCUCCGCACAu 2 19 64 88 [mm9:6:113232364-113232388:+] 0.5677 149 7 -20.24 -0.1029 MIMAT0004865 mmu-miR-297c 211232 Cpne9 uguacAUGU-ACGU--GUGUAUGUa |||| ||:| |||||||| acagcUACAGUGUACUCACAUACAu 2 18 665 689 [mm9:6:113255280-113255304:+] 0.5000 159 7 -19.11 -0.6185 MIMAT0004892 mmu-miR-568 211232 Cpne9 cacaCAUAUGUA-AAUAUGUa | | || | ||||||| uuaaGAAAACUUGUUAUACAu 2 17 709 729 [mm9:6:113255324-113255344:+] 0.5018 147 7 -7.76 -0.7237 MIMAT0004897 mmu-miR-654-5p 211232 Cpne9 ugugUACAAGACGU----CGAAUGGu ||| |: ||| ||||||| gccaAUGCUUAGCAGUCUGCUUACCu 2 19 13 38 [mm9:6:113254628-113254653:+] 0.5441 149 7 -13.93 -0.3507 MIMAT0004933 mmu-miR-878-3p 211232 Cpne9 agAUGGGUCACACCACAGUAcg ||:|::| | |||||| cuUAUCUGGACU-UUGUCAUua 3 21 878 898 [mm9:6:113255493-113255513:+] 0.5002 130 0 -12.23 -0.1875 MIMAT0004940 mmu-miR-511 211232 Cpne9 acUCACGUC--UCGUUUUCCGUa | ||| | ||: ||||||| ccACUGCUGGAAGUUAAAGGCAc 2 20 45 67 [mm9:6:113254660-113254682:+] 0.5352 154 7 -13.87 -0.2448 MIMAT0005291 mmu-miR-582-5p 211232 Cpne9 ucAUUGACCAACU-UGUUGACAu ||:|| || | |||||||| gcUAGCU--UUAAGACAACUGUg 2 21 805 825 [mm9:6:113255420-113255440:+] 0.5036 156 7 -15.04 -0.3753 MIMAT0007871 mmu-miR-1892 211232 Cpne9 uaggaggGAGGGCAGGGGUUUa :||:: ||||||| uaaaaggUUCUUCACCCCAAAa 2 16 781 802 [mm9:6:113255396-113255417:+] 0.5036 147 7 -17.47 -0.7063 MIMAT0009390 mmu-miR-1927 211232 Cpne9 aguCAGGGAUUGUAGGUCUCCAg | :| |:|: ||||||| guuGAUCAGAGCGAGCAGAGGUc 2 21 578 600 [mm9:6:113255193-113255215:+] 0.5000 148 7 -22.35 -0.2424 MIMAT0009397 mmu-miR-1933-3p 211232 Cpne9 uauCAGUGUGACUACCAGGACc | | : | | ||||||| acuGCCCUUCCAAAGGUCCUGa 2 20 405 426 [mm9:6:113255020-113255041:+] 0.5000 143 7 -13.24 -0.7373 MIMAT0009398 mmu-miR-1934 211232 Cpne9 ucuccugcuucGUCCCCUGGUCu || ||||||| gcggcuuuggcCAUUGGACCAGu 2 13 144 166 [mm9:6:113232444-113232466:+] 0.5869 144 7 -18.80 -0.4687 MIMAT0009400 mmu-miR-1936 211232 Cpne9 cgGUCAAGUGUCGUCCAGUCAAu |:|| | || ||||||| gcCGGUGCCCA----GUCAGUUc 2 22 232 250 [mm9:6:113232532-113232535,113232955-113232969:+] 0.5735 144 7 -17.90 -0.1414 MIMAT0009405 mmu-miR-1941-5p 211232 Cpne9 uucggagacaUGGUCGUAGAGGga | || |||||| uuugaggaaaAGCAAAAUCUCCgc 3 15 482 505 [mm9:6:113233416-113233439:+] 0.6832 126 0 -13.87 -0.1235 MIMAT0009413 mmu-miR-1947 211232 Cpne9 gucgUGAGUCGAUC--GAG-CAGGa | | |||||| ||| |||| ccagAAUGAGCUAGCCCUCUGUCCa 2 19 275 299 [mm9:6:113232994-113233018:+] 0.5362 125 0 -22.77 -0.4070 MIMAT0009441 mmu-miR-1968 211232 Cpne9 ucagguGGUAGGAAUUGUC-GACGu | || ||||:||| |||| cauagcCAAUGCUUAGCAGUCUGCu 2 19 9 33 [mm9:6:113254624-113254648:+] 0.5441 134 0 -21.49 -0.8199 MIMAT0009442 mmu-miR-1969 211232 Cpne9 uggguacaauuucAGAGGUAGAa | ||||||| ugagcuagcccucUGUCCAUCUg 2 11 281 303 [mm9:6:113233000-113233022:+] 0.5362 142 7 -13.06 -0.3109 MIMAT0011222 mmu-miR-2146 211232 Cpne9 guGUACCUUGGGAAGAGGUg | |||| | ||||||| gaCCUGGAUACAUUCUCCAa 2 19 332 351 [mm9:6:113233051-113233070:+] 0.5776 158 7 -18.13 -0.6272 MIMAT0012771 mmu-miR-432 211232 Cpne9 gaCGGGUGACUA-G-AUGAGGUUCu | || : ||| | | ||||||| uaGACC-UGGAUACAUUCUCCAAGu 2 22 330 353 [mm9:6:113233049-113233072:+] 0.5776 145 7 -17.52 -0.4610 MIMAT0015640 mmu-miR-3470a 211232 Cpne9 ggUCGGA--CCAG-AU-GUU-UCACu ||||| |||| | ||| |||| agAGCCUGGGGUCACAUCAAGAGUGa 2 20 249 274 [mm9:6:113254864-113254889:+] 0.5516 120 0 -21.43 -0.2721 MIMAT0015646 mmu-miR-3474 211232 Cpne9 cuuagGUGCAGAGGAGG-GUCCc ||| |:|::||| |||| uugaaCAC-UUUUUUCCUCAGGa 2 18 732 753 [mm9:6:113255347-113255368:+] 0.5036 123 0 -19.73 -0.8648 MIMAT0000126 mmu-miR-27b 211232 Cpne9 cgucUUGAA--UC-GGUGACACUu |:||| || | ||||||| agcuAGCUUUAAGACAACUGUGAg 2 18 804 827 [mm9:6:113255419-113255442:+] 0.5036 151 7 -17.28 -0.3407 MIMAT0000127 mmu-miR-29b 211232 Cpne9 uuguGACUAAAGU-UUACCACGAu | || || ::||||||| aaguCGGACCCCAUGGUGGUGCUu 2 20 350 373 [mm9:6:113233069-113233081,113233190-113233200:+] 0.6066 146 7 -14.70 -0.1348 MIMAT0000133 mmu-miR-101a 211232 Cpne9 aaGUCAAUAGUGUC-AUGACAu ||| |:| |||| |||||| uuCAGGUGU-ACAGCUACUGUg 2 20 633 653 [mm9:6:113255248-113255268:+] 0.5000 133 6 -21.62 -0.1753 MIMAT0000140 mmu-miR-128 211232 Cpne9 uuucucuggccaaGUGACACu ||||||| aucccagcaaccaCACUGUGg 2 9 433 453 [mm9:6:113255048-113255068:+] 0.5000 140 7 -15.71 -0.1763 MIMAT0000146 mmu-miR-134 211232 Cpne9 ggggagaccAGUUGGUCAGUGu ||| |||||||| cuaaugcacUCAUCCAGUCACu 2 14 312 333 [mm9:6:113254927-113254948:+] 0.5575 157 7 -18.30 -0.8572 MIMAT0000147 mmu-miR-135a 211232 Cpne9 aguGUAUCCUUAUU-UUUCG-GUAu |||: || || ||||| ||| ccuCAUGACAACAAUAAAGCUCAUc 2 21 175 199 [mm9:6:113254790-113254814:+] 0.5904 127 0 -7.96 -0.9378 MIMAT0000149 mmu-miR-137 211232 Cpne9 gaUGCGCAUAAGAAUUC-GUUAUu |||: | ||| ||| ||||| caACGUCGACUCUAAAGCCAAUAu 2 22 517 540 [mm9:6:113233943-113233966:+] 0.6183 133 0 -13.03 -1.0403 MIMAT0000155 mmu-miR-142-3p 211232 Cpne9 agGUAUUUC--A-UCC-UUUGU-GAUGu |||:||| | ||| : ||| |||| caCAUGAAGGUUCAGGUGUACAGCUACu 2 22 623 650 [mm9:6:113255238-113255265:+] 0.5000 122 0 -18.77 -0.4028 MIMAT0000158 mmu-miR-146a 211232 Cpne9 uuGGGUAC-C-UUAAGUCAAGAGu ::|:|| | || |: |||||| acUUCGUGCGCAAAUUCGUUCUCg 2 21 450 473 [mm9:6:113233384-113233407:+] 0.6685 126 6 -19.38 -0.1100 MIMAT0000223 mmu-miR-193 211232 Cpne9 ugacccugaAACAUCCGGUCAa || |||||||| aaucacaagUUCAAGGCCAGUg 2 14 849 870 [mm9:6:113255464-113255485:+] 0.5002 149 7 -14.40 -0.4573 MIMAT0000236 mmu-miR-203 211232 Cpne9 gaucaccAGGAU---UUGUAAAGUg |:||| || |||||| cagucacUUCUAUAUAAAAUUUCAa 2 16 326 350 [mm9:6:113254941-113254965:+] 0.5575 122 6 -8.80 -0.2445 MIMAT0000238 mmu-miR-205 211232 Cpne9 gucugaggccaccuUACUUCCu ||||||| uuuccaacaaccacAUGAAGGu 2 9 612 633 [mm9:6:113255227-113255248:+] 0.5000 140 7 -11.57 -0.3283 MIMAT0000533 mmu-miR-26a 211232 Cpne9 ucGGAUAGGACCUAAUGAACUu |:|:|: | | ||||||| aaCUUGUUAUACA-UACUUGAa 2 21 716 736 [mm9:6:113255331-113255351:+] 0.5018 150 7 -13.56 -1.0778 MIMAT0000534 mmu-miR-26b 211232 Cpne9 ugGAUAGGACUUAAUGAACUu :|:|: | | ||||||| acUUGUUAU-ACAUACUUGAa 2 20 717 736 [mm9:6:113255332-113255351:+] 0.5018 145 7 -13.29 -1.0966 MIMAT0000535 mmu-miR-29a 211232 Cpne9 auuGGCUAAAGU-CUACCACGAu | || || |:||||||| aguCGGACCCCAUGGUGGUGCUu 2 20 351 373 [mm9:6:113233070-113233081,113233190-113233200:+] 0.6066 150 7 -21.97 -0.1348 MIMAT0000536 mmu-miR-29c 211232 Cpne9 auuGGCUAAAGU-UUACCACGAu | || || ::||||||| aguCGGACCCCAUGGUGGUGCUu 2 20 351 373 [mm9:6:113233070-113233081,113233190-113233200:+] 0.6066 146 7 -19.37 -0.1348 MIMAT0000537 mmu-miR-27a 211232 Cpne9 cgccUUGAA--UC-GGUGACACUu |:||| || | ||||||| agcuAGCUUUAAGACAACUGUGAg 2 18 804 827 [mm9:6:113255419-113255442:+] 0.5036 151 7 -16.75 -0.3407 MIMAT0000616 mmu-miR-101b 211232 Cpne9 aaGUCGAUAGUGUC-AUGACAu ||| |:| |||| |||||| uuCAGGUGU-ACAGCUACUGUg 2 20 633 653 [mm9:6:113255248-113255268:+] 0.5000 133 6 -22.09 -0.1753 MIMAT0000661 mmu-miR-214 211232 Cpne9 ugACGGACAGACACG-GACGACa | ||||||| | |||||| cuUACCUGUCUACCCACUGCUGg 2 21 32 54 [mm9:6:113254647-113254669:+] 0.5352 132 6 -23.68 -0.1319 MIMAT0000662 mmu-miR-216a 211232 Cpne9 agUGUCAACGGUCGACUCUAAu |:|| | :|| ||||||| ccAUAGCUUUCA--UGAGAUUu 2 21 759 778 [mm9:6:113255374-113255393:+] 0.5036 153 7 -14.42 -0.5518 MIMAT0000662 mmu-miR-216a 211232 Cpne9 agUGUCAACGGUCG--ACUCUAAu ||| ||| : ||||||| ucACAACCACCAUUAAUGAGAUUu 2 21 455 478 [mm9:6:113255070-113255093:+] 0.5000 143 7 -16.15 -0.5733 MIMAT0000671 mmu-miR-224 211232 Cpne9 uugccUUGGUGAUCAC-UGAAu |:|:|| |||| |||| aagacAGCUAC-AGUGUACUUa 2 17 502 522 [mm9:6:113255117-113255137:+] 0.5000 122 0 -15.51 -0.9779 MIMAT0000743 mmu-miR-379 211232 Cpne9 ggAUGCAAGGUAUCAGAUGGu |:| || | | ||||||| ucUGC-UUACCU-GUCUACCc 2 20 28 46 [mm9:6:113254643-113254661:+] 0.5441 147 7 -17.62 -0.3937 MIMAT0004745 mmu-miR-384-5p 211232 Cpne9 ugUAACGGAUCCUU---AACAA-AUGu | | ::|| ||| ||||| ||| uaAAUCUUUAAGAAAACUUGUUAUACa 2 22 702 728 [mm9:6:113255317-113255343:+] 0.5018 120 0 -7.21 -1.1484 MIMAT0001076 mmu-miR-384-3p 211232 Cpne9 uaACACU-UGUUAA-AGAUCCUUa | ||| :| || |||||||| ugUUUGAUGCUUUUCUCUAGGAAu 2 21 302 325 [mm9:6:113233021-113233044:+] 0.5776 154 7 -13.77 -0.6159 MIMAT0001091 mmu-miR-410 211232 Cpne9 ugUCCGGUAGACACAAUAUaa | | | || ||||||| uuAAGAAAACU-UGUUAUAca 3 20 709 728 [mm9:6:113255324-113255343:+] 0.5018 129 0 -5.72 -0.1208 MIMAT0001091 mmu-miR-410 211232 Cpne9 uguccgguagacacAAUAUAa |||||| cagcuacaguguacUUAUAUa 2 8 506 526 [mm9:6:113255121-113255141:+] 0.5000 120 6 -7.45 -0.1378 MIMAT0003729 mmu-miR-216b 211232 Cpne9 aguGUAAACGGACGU-CUCUAAa || | ||:| || |||||| accCA-UAGCUUUCAUGAGAUUu 2 20 757 778 [mm9:6:113255372-113255393:+] 0.5036 125 6 -13.86 -0.4616 MIMAT0003730 mmu-miR-592 211232 Cpne9 uguaGUAGCGUAUAACUG-UGUUa :| ||| | |||| |||| caccUACCGCCUCAUGACAACAAu 2 20 166 189 [mm9:6:113254781-113254804:+] 0.5904 123 0 -12.00 -0.6026 MIMAT0003475 mmu-miR-146b 211232 Cpne9 ucGGAUACCUUAAGUCAAGAGu | |: | || |: |||||| uuCGUGCGCAAAUUCGUUCUCg 2 21 452 473 [mm9:6:113233386-113233407:+] 0.6685 128 6 -15.05 -0.1100 MIMAT0003513 mmu-miR-505 211232 Cpne9 ucuUUUGGUCGUUCAC-AACUGc :||||: |:||| ||||| gacGAACCG--AGGUGAUUGACa 2 20 414 434 [mm9:6:113233348-113233368:+] 0.6685 124 0 -16.13 -0.8268 MIMAT0004859 mmu-miR-193b 211232 Cpne9 ucgcccugaAACACCCGGUCAa || ||||||| aaucacaagUUCAAGGCCAGUg 2 14 849 870 [mm9:6:113255464-113255485:+] 0.5002 141 7 -12.54 -0.4573 MIMAT0004896 mmu-miR-590-3p 211232 Cpne9 ugaucGAAUAUGUAUUUUAAu ||| ||:|||||||| agucaCUUCUAUAUAAAAUUu 2 17 327 347 [mm9:6:113254942-113254962:+] 0.5575 168 7 -11.26 -1.0438 MIMAT0004896 mmu-miR-590-3p 211232 Cpne9 ugaUCGAAUAU-GUAUUUUAAu ||| | : | ||||||| gcgAGCAGAGGUCCUAAAAUUc 2 19 588 609 [mm9:6:113255203-113255224:+] 0.5000 145 7 -4.41 -0.2156 MIMAT0004896 mmu-miR-590-3p 211232 Cpne9 ugaucgaaUAUGUAUUUUAau ||||||||||| guacucacAUACAUAAAAUaa 3 14 676 696 [mm9:6:113255291-113255311:+] 0.5000 145 0 -9.56 -0.2028 MIMAT0004896 mmu-miR-590-3p 211232 Cpne9 ugAUCGAAUAUGUAUU-UUAau || ||||||:|||| ||| ugUA-CUUAUAUAUAAUAAUaa 3 20 515 535 [mm9:6:113255130-113255150:+] 0.5000 121 0 -10.97 -0.1574

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G063999 Cpne9 Mus musculus 211232

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Cpne9 mmu-miR-297a beg:671 end:690 pic:3' TGTACGTGTACGTGTGTATGTA 5'& .||.|| ||||||||| &5' --GTGTACT----CACATACAT 3' Cpne9 mmu-miR-297b-5p beg:671 end:690 pic:3' TGTACAAGTACGTG--TGTATGTA 5'& .||.|| |||||||| &5' --------GTGTACTCACATACAT 3' Cpne9 mmu-miR-297c beg:671 end:690 pic:3' TGTACATGTACGTGTGTATGTA 5'& .||||| ||||||||| &5' --GTGTACT----CACATACAT 3' Cpne9 mmu-miR-328 beg:84 end:98 pic:3' TGCCTTCCCGTCTCTCCCGGTC 5'& ||| |||||||| &5' ---------CAG-GAGGGCCA- 3' Cpne9 mcmv-miR-m01-3 beg:783 end:797 pic:3' AGCTCCGTTGTCAGCGAAGTGGC 5'& .||. ||||||| &5' ----------GGTT-CTTCACC- 3' Cpne9 mcmv-miR-M55-1 beg:148 end:168 pic:3' TGCCG-ATCGTGCGGCTAGTGGT 5'& ||| |.|||. |||||||| &5' --GGCTTGGCAT---GATCACCA 3' Cpne9 mmu-miR-654-5p beg:21 end:38 pic:3' TGTGTACAAGACGTCGAATGGT 5'& .|| ||| ||||||| &5' --GCAG--TCT---GCTTACC- 3' Cpne9 mmu-miR-1933-3p beg:416 end:426 pic:3' TATCAGTGTGACTACCAGGACC 5'& ||||||| &5' --------------GGTCCTG- 3' Cpne9 mcmv-miR-m01-1 beg:729 end:750 pic:3' GGCAAGCTGCAAT-AAGAGGAGA 5'& |.|| ||.||||| &5' ----TTGAACACTTTTTTCCTC- 3' Cpne9 mcmv-miR-m59-1 beg:36 end:55 pic:3' GACTGCCAGCTCCGTGACGATT 5'& ||| |||||||.. &5' ------GTCTACCCACTGCTGG 3' Cpne9 mghv-miR-M1-3 beg:633 end:663 pic:3' TTCGC--GTTGAGGAC----GAGTGGAG 5'& |.|.| ||.|| ||| ||||.|| &5' AGGTGTACAGCTACTGTGTACTCATCT- 3' Cpne9 mmu-let-7b beg:157 end:180 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& .|.||| | |||||| ||||| &5' GATCAC-C-ACCTACCGCCTCA 3' Cpne9 mmu-let-7gstar beg:650 end:669 pic:3' CGTTCCGTCACCGGACATGTCA 5'& |.| .|||||||| &5' -----GTACTCATCTGTACAG- 3' Cpne9 mmu-miR-106a beg:877 end:898 pic:3' GATGGACGTGACAATCGTGAAAC 5'& ||.||| ||| ||. ||.| &5' -TATCTGGACT-TTGTCATT--- 3' Cpne9 mmu-miR-1186b beg:417 end:439 pic:3' CACCACGTACGGAAA-TTAGGGT 5'& ||| | || || ||||||| &5' --GGT-CCTGAGTTCAAATCCCA 3' Cpne9 mmu-miR-1187 beg:667 end:691 pic:3' AATGTGTGTATGTGTGTGTGTAT 5'& |||| . ||| ||||.||||| &5' -TACA-GTGTACTCACATACATA 3' Cpne9 mmu-miR-1199 beg:370 end:390 pic:3' GGCGCGCTGGCC------CTGAGTCT 5'& |.|.|| |.||||| &5' ------GGCTGGTGAGATGGCTCAG- 3' Cpne9 mmu-miR-128 beg:812 end:827 pic:3' TTTCTCTGGCCAAGTGACACT 5'& |||| ||||||| &5' ----AGACA-----ACTGTGA 3' Cpne9 mmu-miR-138star beg:370 end:395 pic:3' GGGACCACAACACT---TCATCGGC 5'& |||||| ||. |||.||. &5' --CTGGTGAGATGGCTCAGTGGCT- 3' Cpne9 mmu-miR-139-5p beg:436 end:454 pic:3' GACCTCTGTGCACGTGACATCT 5'& .|| ||||||.| &5' ------GCAACCACACTGTGG- 3' Cpne9 mmu-miR-143 beg:664 end:683 pic:3' CTCGATGTCACGAAGTAGAGT 5'& ||||||||||. |||| &5' -AGCTACAGTGTA----CTCA 3' Cpne9 mmu-miR-145 beg:37 end:56 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& ||. .||||| &5' ------TCTACCCACTGCTGGA- 3' Cpne9 mmu-miR-145star beg:75 end:93 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& |||| ||||||. &5' ---GAACCTGA---CCAGGAG- 3' Cpne9 mmu-miR-151-3p beg:12 end:32 pic:3' GGAGTTCCTCGGA--GTCAGATC 5'& ||| ||. ||||||. &5' ---CAAT--GCTTAGCAGTCTG- 3' Cpne9 mmu-miR-154 beg:270 end:292 pic:3' GCTTCCGTTGTGCCTATTGGAT 5'& ||.|| |. ||||||.| &5' -GAGGGAGTAAT-GATAACTT- 3' Cpne9 mmu-miR-184 beg:195 end:217 pic:3' TGGGAATA-GTCAAGAGGCAGGT 5'& .|||| ||| ||||.|||. &5' --TCTTACGCAG-TCTCTGTCT- 3' Cpne9 mmu-miR-1894-5p beg:217 end:238 pic:3' TCTCCGTCCACCATC-CCCTCTC 5'& .||. | ||| || |||||| &5' --GGGT-GTTGG-AGAGGGAGA- 3' Cpne9 mmu-miR-1897-5p beg:406 end:434 pic:3' GGGGGAGAAAG--AGG---TAGGTTTC 5'& |||.|| ||| .|.|||| &5' -CCCTTCCAAAGGTCCTGAGTTCAAA- 3' Cpne9 mmu-miR-1904 beg:580 end:598 pic:3' GGAGGGAGGTCTC-CTCGTCTTG 5'& .||||| |||||||. &5' -------TCAGAGCGAGCAGAG- 3' Cpne9 mmu-miR-1927 beg:580 end:601 pic:3' AGTCAGGGATTGTAGGTCTCCAG 5'& .| |.|. |||||||| &5' -----TCAGAGCGAGCAGAGGTC 3' Cpne9 mmu-miR-193 beg:859 end:870 pic:3' TGACCCTGAAACATCCGGTCAA 5'& |||||||| &5' -------------AGGCCAGT- 3' Cpne9 mmu-miR-1933-5p beg:168 end:184 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& |||| .|||||| &5' --------ACCGCC--TCATGAC- 3' Cpne9 mmu-miR-1934 beg:564 end:588 pic:3' TCTCCTGCTTCGTCCC--CTGGTCT 5'& ||| |||||||| ||.|||| &5' -GAGC---AAGCAGGGTTGATCAGA 3' Cpne9 mmu-miR-1935 beg:200 end:217 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& || |||.|||||.|| &5' -------CG-CAGTCTCTGTCT 3' Cpne9 mmu-miR-193b beg:860 end:870 pic:3' TCGCCCTGAAACACCCGGTCAA 5'& ||||||| &5' --------------GGCCAGT- 3' Cpne9 mmu-miR-193star beg:742 end:762 pic:3' AGTAGAACGGGCGTT---TCTGGGT 5'& .|| ||. ||||||| &5' --------TCCTCAGGACAGACCCA 3' Cpne9 mmu-miR-193star beg:235 end:250 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& |.| |..|||||| &5' ---------CTG-AGGGACCCA 3' Cpne9 mmu-miR-1951 beg:448 end:470 pic:3' ATC-GGTG-TGGTCAGAGGTGATG 5'& |.| .||| |||| |||.|| &5' TGGTTCACAACCA----CCATTA- 3' Cpne9 mmu-miR-1969 beg:193 end:217 pic:3' TGGGTACAATT--TCAGAGGTAGAA 5'& |.||| ||| ||||||..||| &5' -CTCATCTTACGCAGTCTCTGTCT- 3' Cpne9 mmu-miR-1982.1 beg:364 end:382 pic:3' GACACCCTCTTGTATCCCACTCT 5'& |||||| ||||||| &5' -TGTGGGCT-------GGTGAGA 3' Cpne9 mmu-miR-1983 beg:358 end:381 pic:3' TCTTTTGTACGA--GGTCCACTC 5'& |||||||.||. |. |||||| &5' AGAAAACGTGTGGGCT-GGTGAG 3' Cpne9 mmu-miR-199b beg:33 end:54 pic:3' ATTGGTTACACGTCTGATGACA 5'& ||| |||.||| &5' --ACCTGTCTACCCACTGCTG- 3' Cpne9 mmu-miR-204 beg:217 end:246 pic:3' TCCGTA-----TCCTACTGTTTCCCTT 5'& .||..| ||| ||| .||||| &5' GGGTGTTGGAGAGGGAGACTGAGGGA- 3' Cpne9 mmu-miR-205 beg:224 end:246 pic:3' GTCTGAGGCCACCTTACTTCCT 5'& .|| || || |||.||| &5' -GGAGA--GGGAGACTGAGGGA 3' Cpne9 mmu-miR-211 beg:224 end:246 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& || |.||| ||| .||||| &5' -GGAGAGGGA-GACTGAGGGA- 3' Cpne9 mmu-miR-2134 beg:78 end:92 pic:3' CGTGGGGCAAAGGGTTCTG 5'& ||.| |||.|| &5' ----CCTGA---CCAGGA- 3' Cpne9 mmu-miR-2136 beg:295 end:310 pic:3' GTGTAGAGTCAGTTGTGGGTC 5'& .||.||||.||| &5' --------GGTTAACATCCA- 3' Cpne9 mmu-miR-216a beg:757 end:778 pic:3' AGTGTCAACGGTCG-ACTCTAAT 5'& ||.| ||. ||||||| &5' -CATA---GCTTTCATGAGATT- 3' Cpne9 mmu-miR-223 beg:387 end:407 pic:3' ACCCCATAAACTG-----TTTGACTGT 5'& ||.| .||||||| &5' ---------TGGCTAAGAGAACTGAC- 3' Cpne9 mmu-miR-26a beg:715 end:737 pic:3' TCGGATAGGACCTAATGAACTT 5'& |.|.|. |||||||| &5' --CTTGTTATACA-TACTTGAA 3' Cpne9 mmu-miR-26b beg:714 end:737 pic:3' TGGATAGGACTTAATGAACTT 5'& ||.|.|. |||||||| &5' ACTTGTTATACA-TACTTGAA 3' Cpne9 mmu-miR-27a beg:435 end:454 pic:3' CGCCTTGAATCG-----GTGACACTT 5'& ||| |||||||. &5' ---------AGCAACCACACTGTGG- 3' Cpne9 mmu-miR-27a beg:805 end:828 pic:3' CGCCTTGAATCGG--------TGACACTT 5'& ||||. |||||||. &5' --------TAGCTTTAAGACAACTGTGAG 3' Cpne9 mmu-miR-27b beg:434 end:454 pic:3' CGTC-TTGAATCGGTGACACTT 5'& ||| ||| |||||||. &5' -CAGCAACCA---CACTGTGG- 3' Cpne9 mmu-miR-27b beg:805 end:828 pic:3' CGTCTTGAATCGG--------TGACACTT 5'& ||||. |||||||. &5' --------TAGCTTTAAGACAACTGTGAG 3' Cpne9 mmu-miR-3099star beg:217 end:241 pic:3' GTTCC-CGACCT-TCCTTC-GACC 5'& .|| |.|||| |||.|| ||| &5' --GGGTGTTGGAGAGGGAGACTG- 3' Cpne9 mmu-miR-30bstar beg:293 end:315 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& || || |||||||| |||.| &5' GAGGTTAACATCCA--TCCTA- 3' Cpne9 mmu-miR-320 beg:794 end:814 pic:3' AGCGGGAGAGTTGGGTCGAAAA 5'& ||| .| |.|||||| &5' ---CCCAAAAGAGCTAGCTTT- 3' Cpne9 mmu-miR-326 beg:230 end:253 pic:3' TGACCTCC--TTCCC-GGGTCTCC 5'& |||| .|||| ||||||| &5' ---GGAGACTGAGGGACCCAGAG- 3' Cpne9 mmu-miR-330 beg:231 end:253 pic:3' CGGATTCTGTG-TCC-GGGTCTCT 5'& .|||| .|| ||||||| &5' ----GAGACTGAGGGACCCAGAG- 3' Cpne9 mmu-miR-33 beg:501 end:520 pic:3' ACGTTAC-GTTGATGTTACGTG 5'& | ||.|||||.||.|| &5' ------GACAGCTACAGTGTAC 3' Cpne9 mmu-miR-33 beg:660 end:680 pic:3' ACGTTACGTTGATGTTACGTG 5'& |.| ||.|||||.||.|| &5' -GTA---CAGCTACAGTGTAC 3' Cpne9 mmu-miR-338-3p beg:43 end:56 pic:3' GTTGTTTTAGTGACTACGACCT 5'& ||| ||||||| &5' ---------CAC---TGCTGGA 3' Cpne9 mmu-miR-338-3p beg:103 end:118 pic:3' GTTGTTTTAGTGACTACGACCT 5'& .|||| .|||||| &5' ------GATCA---GTGCTGG- 3' Cpne9 mmu-miR-338-3p beg:213 end:230 pic:3' GTTGTTTTAGTGACTACGACCT 5'& |||. |.||.|||| &5' --------TCATGGGTGTTGGA 3' Cpne9 mmu-miR-343 beg:216 end:238 pic:3' AGACCCGTGTAC-TTCCCTCT 5'& |||| . .||||||| &5' --TGGGTGTTGGAGAGGGAGA 3' Cpne9 mmu-miR-3470b beg:248 end:275 pic:3' GGTCGGACCAGA-TG----TCTCACT 5'& ||||||| | || ||||||| &5' --AGCCTGGGGTCACATCAAGAGTGA 3' Cpne9 mmu-miR-34a beg:32 end:53 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& ||| |. | ||||||. &5' ---ACCTGTCTACCCACTGCT- 3' Cpne9 mmu-miR-350 beg:936 end:949 pic:3' CTTTCACATACCCGA-AACACTT 5'& |||| |||||| &5' -----------GGCTGTTGTGA- 3' Cpne9 mmu-miR-375 beg:257 end:283 pic:3' AGTGCG---CTCGGCTTGCTTGTTT 5'& |||| ||| .||. ||..|| &5' TCACATCAAGAG-TGAGGGAGTAA- 3' Cpne9 mmu-miR-379 beg:26 end:46 pic:3' GGATGCAAGGTATCAGATGGT 5'& ||.| || ||||||| &5' -CTGCTTACCT--GTCTACC- 3' Cpne9 mmu-miR-380-5p beg:445 end:464 pic:3' GCGTACAAGATACCA---GTTGGTA 5'& ||.|||| |||||| &5' --------CTGTGGTTCACAACCA- 3' Cpne9 mmu-miR-382 beg:274 end:293 pic:3' GCTTAGGTGGTGCTTGTTGAAG 5'& ||.| |.| |.|||||| &5' -GAGTA----ATG-ATAACTTC 3' Cpne9 mmu-miR-423-5p beg:403 end:415 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& ||||||.|| &5' -------------CTGCCCTTC- 3' Cpne9 mmu-miR-431 beg:547 end:564 pic:3' ACGTACTGCCGGACGTTCTGT 5'& || || || ||||||. &5' -GCCGGA--GCAAGCAAGAT- 3' Cpne9 mmu-miR-433 beg:754 end:774 pic:3' TGTGGCTCCTCGGGTAGTACTA 5'& ||| |||.. |||||| &5' --ACCCAT-AGCTT-TCATGA- 3' Cpne9 mmu-miR-466a-5p beg:671 end:691 pic:3' ATACATGTACATGTGTGTGTAT 5'& .||||| ||||.||||| &5' -GTGTACT----CACATACATA 3' Cpne9 mmu-miR-466b-5p beg:671 end:690 pic:3' GTACATGTACATGTGTGTGTAG 5'& .||||| ||||.|||| &5' -GTGTACT----CACATACAT- 3' Cpne9 mmu-miR-466e-5p beg:671 end:690 pic:3' ATACATGTACATGTGTGTGTAG 5'& .||||| ||||.|||| &5' -GTGTACT----CACATACAT- 3' Cpne9 mmu-miR-466g beg:647 end:666 pic:3' ACACACACGTACACAGACATA 5'& ||||.| |||||| &5' ----TGTGTACTCATCTGTA- 3' Cpne9 mmu-miR-466k beg:671 end:691 pic:3' AGTGTACATGTACATGTGTGTGT 5'& .||||| |||.|||.| &5' ----GTGTACTC--ACATACATA 3' Cpne9 mmu-miR-467b beg:505 end:524 pic:3' GTATATGTACGTC-CGTGAATG 5'& .| ||| |.|||||. &5' -----GCTA-CAGTGTACTTAT 3' Cpne9 mmu-miR-467c beg:663 end:684 pic:3' GTGTATATGT-ACGTGCGTGAAT 5'& .||| |||| ||.|| ||| &5' TACAGCTACAGTGTACTCAC--- 3' Cpne9 mmu-miR-484 beg:237 end:258 pic:3' TAGCCCTCCCCTGA--CTCGGACT 5'& || ||||| |||||||. &5' -----GA-GGGACCCAGAGCCTGG 3' Cpne9 mmu-miR-488 beg:753 end:771 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& |||| |.|| |||||| &5' GACCC----ATAG-CTTTCA- 3' Cpne9 mmu-miR-488star beg:871 end:887 pic:3' AACTCTCACGAT-AATAGACCC 5'& || |||||||| &5' --------GCAACTTATCTGG- 3' Cpne9 mmu-miR-490 beg:86 end:107 pic:3' GTCGTACCTCA-GG-AGGTCCAAC 5'& |||| || ||.|||||| &5' ------GGAGGGCCATCTAGGTTG 3' Cpne9 mmu-miR-496 beg:665 end:683 pic:3' CTCTAACCGGTACATTATGAGT 5'& ||.| .|||||| &5' -------GCTACAGTGTACTCA 3' Cpne9 mmu-miR-496 beg:642 end:660 pic:3' CTCTAACCGGT-ACATTATGAGT 5'& ||.| ||| .|||||| &5' -------GCTACTGT-GTACTCA 3' Cpne9 mmu-miR-497 beg:661 end:682 pic:3' ATGTTTGGTGTCACACGACGAC 5'& ||| |.|.||||||| || | &5' TAC-AGCTACAGTGTACT-C-- 3' Cpne9 mmu-miR-511 beg:46 end:67 pic:3' ACTCACG-TC-TCGTTTTCCGTA 5'& ||| .| ||. ||||||| &5' ----TGCTGGAAGTTAAAGGCA- 3' Cpne9 mmu-miR-568 beg:511 end:528 pic:3' CACACATATGTAAATATGTA 5'& ||.||| |||||.|| &5' ----GTGTAC--TTATATAT 3' Cpne9 mmu-miR-582-5p beg:805 end:826 pic:3' TCATTGACCAACTTGTTGACAT 5'& ||.|| .||||||||. &5' --TAGCTTTAA-GACAACTGTG 3' Cpne9 mmu-miR-669g beg:497 end:519 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& || || .||| ||||.||.| &5' -TC-TGAAGACAGCTACAGTGTA 3' Cpne9 mmu-miR-669n beg:671 end:693 pic:3' TGTGTGTAG-GTGTGTGTTTA 5'& . .|| || ||.|||.||| &5' GTGTAC-TCACATACATAAA- 3' Cpne9 mmu-miR-673-3p beg:634 end:659 pic:3' CCACGTGTCT-TGAGTCG-GGGCCT 5'& ||||.|||| ||| |. |.| &5' GGTGTACAGCTACTGTGTACTC--- 3' Cpne9 mmu-miR-682 beg:434 end:458 pic:3' GTC--TGAAGTGACACTGACGTC 5'& ||| || ||||||| | || &5' CAGCAACCACACTGTGGTT-CA- 3' Cpne9 mmu-miR-690 beg:800 end:814 pic:3' AAACCAACACTCGGATCGGAAA 5'& ||| |||||.|| &5' ---------GAG-CTAGCTTT- 3' Cpne9 mmu-miR-696 beg:666 end:684 pic:3' GGGTGTCGTTCGTGTGCG 5'& |.||||.. | ||| &5' -CTACAGTGTACTCAC-- 3' Cpne9 mmu-miR-696 beg:432 end:449 pic:3' GGGTGTCGTTCGTGTGCG 5'& || |||||| ||||| &5' -CC-CAGCAACCACAC-- 3' Cpne9 mmu-miR-709 beg:204 end:218 pic:3' AGGAGGACGGAGACGGAGG 5'& |.|||||.||| &5' -------GTCTCTGTCTC- 3' Cpne9 mmu-miR-710 beg:138 end:157 pic:3' GAGTTGAGAGGGG-TTCTGAACC 5'& ||.| |||.||||| &5' -------CTTCAGAAAGGCTTGG 3' Cpne9 mmu-miR-713 beg:100 end:115 pic:3' CGACACACGGA-AGTCACGT 5'& |.. ||||||| &5' -------GTTGATCAGTGC- 3' Cpne9 mmu-miR-713 beg:505 end:519 pic:3' CGACACACGGAAGTCACGT 5'& ||. |||||.| &5' -------GCTA-CAGTGTA 3' Cpne9 mmu-miR-713 beg:658 end:679 pic:3' CGACACA-CGGAAGTCACGT 5'& |||| ||. |||||.| &5' -CTGTACAGCTA-CAGTGTA 3' Cpne9 mmu-miR-743b-5p beg:549 end:572 pic:3' ACTACCT-GTGG--TC-AGACTTGT 5'& ||| || || |||||.|| &5' ----GGAGCAAGCAAGATCTGAGCA 3' Cpne9 mmu-miR-743b-5p beg:60 end:82 pic:3' ACTACCTGTGG---TC-AGACTTGT 5'& |.|||| || ||||||| &5' -----GGCACCTGGAGCTCTGAAC- 3' Cpne9 mmu-miR-760 beg:742 end:767 pic:3' AGGGG---TGTCTGGGTCTCGGC 5'& |||.| ||||||||| |||. &5' TCCTCAGGACAGACCCATAGCT- 3' Cpne9 mmu-miR-760 beg:235 end:255 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& |. | .||||||||||| &5' --CTGAGGGACCCAGAGCC- 3' Cpne9 mmu-miR-767 beg:493 end:519 pic:3' AC-GAG-TCTGTTGGTACCACGT 5'& || || |||||.|.| |||.| &5' TGTCTGAAGACAGCTACAGTGTA 3' Cpne9 mmu-miR-770-3p beg:433 end:459 pic:3' GGTCGA-GGTGCAGT-CCGGGTGC 5'& ||||| |||| ||..||| &5' CCAGCAACCACACTGTGGTTCAC- 3' Cpne9 mmu-miR-804 beg:669 end:685 pic:3' AGGTC-CACTCCTTGTTGAGTGT 5'& ||| || ||||||| &5' --CAGTGT--------ACTCACA 3' Cpne9 mmu-miR-872star beg:436 end:458 pic:3' TCCTCCGATGACGT--TATCAAGT 5'& || || || .|.||||| &5' -----GCAACCACACTGTGGTTCA 3' Cpne9 mmu-miR-876-5p beg:574 end:602 pic:3' ATC-ACTAAGTGTC-----TCTTTAGGT 5'& .| ||| ||| || |||..||| &5' -GGTTGA-TCAGAGCGAGCAGAGGTCC- 3' Cpne9 mmu-miR-879star beg:756 end:775 pic:3' GGCTTTCGAACTTCGGTATTCG 5'& || ||||| .|||.|| &5' CCCATAGCTT----TCATGAG- 3' Cpne9 mmu-miR-93star beg:10 end:29 pic:3' GCCCTTCACGAT--CGAGTCGTCA 5'& || |||.|||||| &5' --------GCCAATGCTTAGCAGT 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cpne9 RAID00329910 mmu-miR-7230-5p miRNA MIMAT0028428 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00360282 mmu-miR-804 miRNA MIMAT0004210 Cpne9 mRNA 211232 CLIP-seq 0.5483 Cpne9 RAID00398534 mmu-miR-26b-5p miRNA MIMAT0000534 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00498157 mmu-miR-384-5p miRNA MIMAT0004745 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00509276 mmu-miR-193a-3p miRNA MIMAT0000223 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00552808 mmu-miR-194-2-3p miRNA MIMAT0017073 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00593689 mmu-miR-146b-5p miRNA MIMAT0003475 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00614491 mmu-miR-224-5p miRNA MIMAT0000671 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00653359 mmu-miR-505-3p miRNA MIMAT0003513 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00667307 mmu-miR-3078-3p miRNA MIMAT0014865 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00705509 mmu-miR-214-3p miRNA MIMAT0000661 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00756499 mmu-miR-6897-5p miRNA MIMAT0027694 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00786045 mmu-miR-24-1-5p miRNA MIMAT0000218 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00817662 mmu-miR-6926-5p miRNA MIMAT0027752 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00850034 mmu-miR-29c-3p miRNA MIMAT0000536 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00898141 mmu-miR-6943-5p miRNA MIMAT0027786 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00934794 mmu-miR-101a-3p miRNA MIMAT0000133 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00943527 mmu-miR-134-5p miRNA MIMAT0000146 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID00972414 mmu-miR-297b-5p miRNA MIMAT0003480 Cpne9 mRNA 211232 CLIP-seq 0.5483 Cpne9 RAID00982815 mmu-miR-146a-5p miRNA MIMAT0000158 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID01021385 mmu-miR-590-3p miRNA MIMAT0004896 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID01048538 mmu-miR-674-5p miRNA MIMAT0003740 Cpne9 mRNA 211232 CLIP-seq 0.5483 Cpne9 RAID01294624 mmu-miR-216b-5p miRNA MIMAT0003729 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID01384821 mmu-miR-297a-5p miRNA MIMAT0000375 Cpne9 mRNA 211232 CLIP-seq 0.5483 Cpne9 RAID01387396 mmu-miR-693-5p miRNA MIMAT0003472 Cpne9 mRNA 211232 CLIP-seq 0.5483 Cpne9 RAID01414377 mmu-miR-297c-5p miRNA MIMAT0004865 Cpne9 mRNA 211232 CLIP-seq 0.5483 Cpne9 RAID01534755 mmu-miR-135a-5p miRNA MIMAT0000147 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID01588145 mmu-miR-379-5p miRNA MIMAT0000743 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID01659630 mmu-miR-29a-3p miRNA MIMAT0000535 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID01676394 mmu-miR-101b-3p miRNA MIMAT0000616 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID01687105 mmu-miR-328-5p miRNA MIMAT0017030 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID01732454 mmu-miR-7055-5p miRNA MIMAT0028014 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID01758277 mmu-miR-137-3p miRNA MIMAT0000149 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID01773725 mmu-miR-6937-5p miRNA MIMAT0027774 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID01780305 mmu-miR-128-3p miRNA MIMAT0000140 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02030401 mmu-miR-203-3p miRNA MIMAT0000236 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02085843 mmu-miR-328-3p miRNA MIMAT0000565 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02089537 mmu-miR-29b-3p miRNA MIMAT0000127 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02246580 mmu-miR-27b-3p miRNA MIMAT0000126 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02276447 mmu-miR-3473d miRNA MIMAT0020632 Cpne9 mRNA 211232 CLIP-seq 0.5483 Cpne9 RAID02348804 mmu-miR-384-3p miRNA MIMAT0001076 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02360638 mmu-miR-124-5p miRNA MIMAT0004527 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02361766 mmu-miR-193b-3p miRNA MIMAT0004859 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02405407 mmu-miR-7060-5p miRNA MIMAT0028024 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02496597 mmu-miR-592-5p miRNA MIMAT0003730 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02521685 mmu-miR-26a-5p miRNA MIMAT0000533 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02690745 mmu-miR-7046-3p miRNA MIMAT0027997 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02736904 mmu-miR-205-5p miRNA MIMAT0000238 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02779666 mmu-miR-488-5p miRNA MIMAT0003449 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID02890643 mmu-miR-6962-5p miRNA MIMAT0027824 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID03098516 mmu-miR-6992-3p miRNA MIMAT0027887 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID03260455 mmu-miR-216a-5p miRNA MIMAT0000662 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID03297444 mmu-miR-24-2-5p miRNA MIMAT0005440 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID03405525 mmu-miR-7677-5p miRNA MIMAT0029868 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID03490295 mmu-miR-410-3p miRNA MIMAT0001091 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID03594251 mmu-miR-6915-3p miRNA MIMAT0027731 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID03609358 mmu-miR-7647-3p miRNA MIMAT0029797 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID03726216 mmu-miR-27a-3p miRNA MIMAT0000537 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID03751306 mmu-miR-6395 miRNA MIMAT0025146 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID03822960 mmu-miR-142a-3p miRNA MIMAT0000155 Cpne9 mRNA 211232 Prediction 0.1828 Cpne9 RAID03916566 mmu-miR-6964-5p miRNA MIMAT0027828 Cpne9 mRNA 211232 Prediction 0.1828