Sec13
DNA & RNA Element - AREsite
Gene NameMotifCDS AreaARE AreaEvidence
Sec13; Sec13l1ATTTA35-10031160-1164
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0000129mmu-miR-30a*110379Sec13cgacguUUGUAGGCUGACUUUc |||:||| :|||||| uaauuuAACGUCCAGCUGAAAg217155176[mm9:6:113678168-113678189:-]0.59451526-21.70-0.1235
MIMAT0004524mmu-miR-30b*110379Sec13cugcaUUUGUA--GGU-GUAGGGuc |||| | |:: |||||| cauagAAACUUUACUGUCAUCCC--318276298[mm9:6:113678046-113678068:-]0.55541270-13.55-0.2140
MIMAT0000161mmu-miR-151-3p110379Sec13ggagUUCCUCGGAGUCA-GAUc :| |||:| |||| ||| ggaaGAAGAGUCCCAGUGCUAc2185879[mm9:6:113678265-113678286:-]0.58651250-13.67-0.2716
MIMAT0004546mmu-miR-202-5p110379Sec13uuUCUUCAUAU-ACGUAUCCUu | || ||| ||||||| | auAAAAUCAUAUUGCAUAGAAa220262283[mm9:6:113678061-113678082:-]0.60411300-9.05-0.1069
MIMAT0000249mmu-miR-30e*110379Sec13cgacAUUUGUAGGCUGACUUUc | |||:||| :|||||| uaauUUAACGUCCAGCUGAAAg219155176[mm9:6:113678168-113678189:-]0.59451546-21.70-0.1235
MIMAT0000378mmu-miR-300110379Sec13cuucucucgaacgggAACGUAu |||||| gcuaauaaaaucauaUUGCAUa28258279[mm9:6:113678065-113678086:-]0.60411206-8.36-0.2409
MIMAT0004631mmu-miR-29a*110379Sec13gacuUGUGGUUUUCUUUAGUca | :|:|| | |||||| auccAAGCUAAUA-AAAUCAua319252272[mm9:6:113678072-113678092:-]0.59931320-6.33-0.1307
MIMAT0004634mmu-miR-31*110379Sec13cuaccgUUA-UACAACCGUAUCgu ||| || || |||||| uaauaaAAUCAUAUU-GCAUAGaa318260282[mm9:6:113678062-113678084:-]0.60411340-7.10-0.3155
MIMAT0000549mmu-miR-322*110379Sec13caCAACGUCGCGAAGUACAaa | || | ||||||| caGCUGAAAGUAUUCAUGUaa320167187[mm9:6:113678157-113678177:-]0.59451270-10.90-0.1225
MIMAT0000578mmu-miR-337-3p110379Sec13uccguaguauauccUCGACUu |||||| guaauuuaacguccAGCUGAa28154174[mm9:6:113678170-113678190:-]0.59451206-11.27-0.1402
MIMAT0004647mmu-miR-338-5p110379Sec13gugaGUCGUGGUCCUAUAACaa :| :| | |||||| aagcUAAUAAAAUCAUAUUGca319256277[mm9:6:113678067-113678088:-]0.60411220-5.38-0.1950
MIMAT0000672mmu-miR-199b*110379Sec13cuuguccaucagauUUGUGACCc |||||||| gugcccacacaugcAACACUGGg21097119[mm9:6:113678225-113678247:-]0.59451457-17.69-0.1375
MIMAT0000672mmu-miR-199b*110379Sec13cuuguccaucAGAUUUG-UGACCc || |||| ||||| uggaacaaccUCCAAACAACUGGg2143659[mm9:6:113678285-113678308:-]0.57841210-19.65-0.3886
MIMAT0002106mmu-miR-465a-5p110379Sec13agUGUAGUCACGGU-AAGAUUUAu | || | | ::| ||:||||| acAAAUGACUAUUAUUUUUAAAUa222191214[mm9:6:113678130-113678153:-]0.59451400-7.17-0.1362
MIMAT0004759mmu-miR-466a-5p110379Sec13auacauGUACAUGUGUGUGUAu |: ||:| ||||||| cacaccCGAGUGCCCACACAUg21788109[mm9:6:113678235-113678256:-]0.59451567-16.87-0.1165
MIMAT0002111mmu-miR-470110379Sec13ugaguggucaCGGUCAGGUUCuu ||:| |||||| uugguuaaaaGCUA-UCCAAGcu314239260[mm9:6:113678084-113678105:-]0.59931270-12.23-0.1573
MIMAT0003186mmu-miR-369-3p110379Sec13uuUCUAGUUGGUACAUAAUAa :|| ||| :: |||||| aaGGAACAAAUGACUAUUAUu220186206[mm9:6:113678138-113678158:-]0.59451276-7.99-0.2649
MIMAT0003891mmu-miR-770-3p110379Sec13ggUC-GAGGUGCAG--UC-CGGGUGc || :||||| | || |||||| caAGAUUCCACACCCGAGUGCCCACa22180105[mm9:6:113678239-113678264:-]0.59451226-21.46-0.5639
MIMAT0003735mmu-miR-672110379Sec13agUGUGUGUCAUGUGGUUGGAGu || :|: |: | ||||||| uuACCUAUUCUGGAACAACCUCc2222648[mm9:6:113678296-113678318:-]0.51951537-14.17-0.6859
MIMAT0003896mmu-miR-763110379Sec13cggugaccaagaaGGGUCGACc :||||||| uaguaauuuaacgUCCAGCUGa210152173[mm9:6:113678171-113678192:-]0.59451417-13.97-1.2386
MIMAT0003474mmu-miR-694110379Sec13gaaguccGUUGUAAAAGUc :| :|||||:| aaaugacUAUUAUUUUUAa213193211[mm9:6:113678133-113678151:-]0.59451280-3.13-0.2025
MIMAT0003497mmu-miR-707110379Sec13gcauccguucgccgUACUGAc |||||| cauguaaggaacaaAUGACUa28181201[mm9:6:113678143-113678163:-]0.59451206-11.63-0.3792
MIMAT0004871mmu-miR-465b-5p110379Sec13gucUAGUCGUGGU-AAGAUUUAu || | :|::| ||:||||| caaAUGACUAUUAUUUUUAAAUa220192214[mm9:6:113678130-113678152:-]0.59451420-8.09-0.1362
MIMAT0004873mmu-miR-465c-5p110379Sec13gucUAGUCGCGGU-AAGAUUUAu || | : ::| ||:||||| caaAUGACUAUUAUUUUUAAAUa220192214[mm9:6:113678130-113678152:-]0.59451340-6.08-0.1389
MIMAT0004875mmu-miR-466b-5p110379Sec13guacauGUACAUGUGUGUGUAg |: ||:| ||||||| cacaccCGAGUGCCCACACAUg21788109[mm9:6:113678235-113678256:-]0.59451567-14.76-0.1165
MIMAT0004877mmu-miR-466c-5p110379Sec13auacauGUACGUGUGUGUGUAg |: |::| ||||||| cacaccCGAGUGCCCACACAUg21788109[mm9:6:113678235-113678256:-]0.59451527-13.61-0.1165
MIMAT0004879mmu-miR-466e-5p110379Sec13auacauGUACAUGUGUGUGUAg |: ||:| ||||||| cacaccCGAGUGCCCACACAUg21788109[mm9:6:113678235-113678256:-]0.59451567-14.67-0.1165
MIMAT0005837mmu-miR-1187110379Sec13aaUGUGUGUAUGUGUGUGUGUAu |||| |: :::| ||||||| ccACACCCGAGUGCCCACACAUg22287109[mm9:6:113678235-113678257:-]0.59451657-19.52-0.1177
MIMAT0005847mmu-miR-1190110379Sec13cugucuccccuuggaGUCGACu |||||| uaguaauuuaacgucCAGCUGa28152173[mm9:6:113678171-113678192:-]0.59451206-13.92-0.2393
MIMAT0007864mmu-miR-1897-5p110379Sec13gggggagaaagaGGUAGGUUUc |:||||||: uuugguuaaaagCUAUCCAAGc211238259[mm9:6:113678085-113678106:-]0.59931300-11.56-0.1209
MIMAT0007868mmu-miR-1903110379Sec13acAGAGUCCUU-CUUCUUCUUCc || | || ::||||||| ccUCCAAACAACUGGGAAGAAGa2214466[mm9:6:113678278-113678300:-]0.57841437-15.80-0.3123
MIMAT0009409mmu-miR-1944110379Sec13uuAGUCUUGAACUGUAAGUCGUGUCUc | | || | |:||| |||:||| gcUAAUAAAAUCAUAUU--GCAUAGAa226258282[mm9:6:113678062-113678086:-]0.60411420-10.07-0.1051
MIMAT0009432mmu-miR-1959110379Sec13gaggugacucgauGUAGGGg |||||| gaaacuuuacuguCAUCCC-28280298[mm9:6:113678046-113678064:-]0.55541206-20.25-0.2609
MIMAT0009441mmu-miR-1968110379Sec13ucAGGUGGUAGGAAUU----GUCGACgu |::| :| :|||| |||||| ugUUUAGUA-AUUUAACGUCCAGCUGaa323148174[mm9:6:113678170-113678196:-]0.59451230-14.70-0.1083
MIMAT0011217mmu-miR-2141110379Sec13uuGAAAAGAC--UG-UGGAGGa || ||||| || |||||| acCUAUUCUGGAACAACCUCCa2182849[mm9:6:113678295-113678316:-]0.51951286-19.50-0.7680
MIMAT0012771mmu-miR-432110379Sec13gacgggugacuagaugAGGUUCu |||||| uuuugguuaaaagcuaUCCAAGc28237259[mm9:6:113678085-113678107:-]0.59931206-14.66-0.1444
MIMAT0012774mmu-miR-664110379Sec13auccgaccCCUCAUUUACUUAu ||| |||||| | ucauguaaGGAACAAAUGACUa215180201[mm9:6:113678143-113678164:-]0.59451220-8.28-0.1558
MIMAT0015643mmu-miR-3472110379Sec13ccAAGGAAGGU---CGAAGACCGAUAAu || :||::| :||:|||| ||| uaUUAUUUUUAAAUAUUUUUGGCCAUUu224200227[mm9:6:113678117-113678144:-]0.59451300-11.60-0.1194
MIMAT0004528mmu-miR-125a-3p110379Sec13ccgaGGGUUCUUGGAGUGGACa | | :|: :||||||| gcaaCACUGGGUGUUCACCUGc219109130[mm9:6:113678214-113678235:-]0.59451467-17.71-0.4089
MIMAT0000223mmu-miR-193110379Sec13ugacccUGAAACAUCCGGUCAa |: || | ||||| | uuuuaaAUAUUUUUGGCCAUUu217206227[mm9:6:113678117-113678138:-]0.59451200-8.41-0.1507
MIMAT0000224mmu-miR-194110379Sec13aggUGUACCUCAACGACAAUGu :| ||| || ||||||| gcaGCCUGGCCUUCCUGUUACc220930[mm9:6:113678314-113678335:-]0.57451597-12.82-0.3595
MIMAT0000229mmu-miR-199a-5p110379Sec13cuuguccaucagAC-UUGUGACCc || |||||||| agugcccacacaUGCAACACUGGg21296119[mm9:6:113678225-113678248:-]0.59451467-20.07-0.1375
MIMAT0000233mmu-miR-200b110379Sec13aguaguaaugguccgUCAUAAu |||||| uaacguccagcugaaAGUAUUc28160181[mm9:6:113678163-113678184:-]0.59451206-11.04-0.1058
MIMAT0000657mmu-miR-200c110379Sec13agguaguaaugggccgUCAUAAu |||||| uuaacguccagcugaaAGUAUUc28159181[mm9:6:113678163-113678185:-]0.59451206-12.63-0.1058
MIMAT0000711mmu-miR-365110379Sec13uaUUCCUAAAAAUCCCCGUAAu || |||||| || |||| uuAAAUAUUUUU--GGCCAUUu221208227[mm9:6:113678117-113678136:-]0.59451290-6.40-0.1164
MIMAT0000739mmu-miR-375110379Sec13agugcgcucggcuugCUUGUUu |||||| aaguauucauguaagGAACAAa28174195[mm9:6:113678149-113678170:-]0.59451206-11.53-0.2956
MIMAT0003151mmu-miR-378110379Sec13ggaagACUGAGGUUCAGGUCa | |:|: | |||||| uuuagUAAUUUAACGUCCAGc217150170[mm9:6:113678174-113678194:-]0.59451246-12.53-0.2054
MIMAT0001537mmu-miR-429110379Sec13ugccguaaUGGUCUGUCAUAAu | | || |||||| uaacguccAGCUGAAAGUAUUc215160181[mm9:6:113678163-113678184:-]0.59451226-11.18-0.1058
MIMAT0003727mmu-miR-374110379Sec13gugaaucguccaacAUAAUAua |||||| aaggaacaaaugacUAUUAUuu39186207[mm9:6:113678137-113678158:-]0.59451200-3.92-0.1585
MIMAT0004859mmu-miR-193b110379Sec13ucgcccUGAAACACCCGGUCAa |: || | ||||| | uuuuaaAUAUUUUUGGCCAUUu217206227[mm9:6:113678117-113678138:-]0.59451200-7.71-0.1507
MIMAT0004896mmu-miR-590-3p110379Sec13ugaucgaauAUGUAUUUUAau || ||||||| uauccaagcUA-AUAAAAUca313251270[mm9:6:113678074-113678093:-]0.59931260-6.00-0.2007
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G055574Sec13Mus musculus11037919536157 0 0 R53070; MOUSE$SEC13_01; Binding factors: mmu-miR-124-3p // 0 0 R53071; MOUSE$SEC13_02; Binding factors: mmu-miR-30a-5p , mmu-miR-30b-5p , mmu-miR-30c-5p , mmu-miR-30d-5p , mmu-miR-30e-5p , mmu-miR-384-5p // 0 0 R53072; MOUSE$SEC13_03; Binding factors: mmu-miR-153-3p , mmu-miR-448-3p
DNA & RNA Element - RepTar
Gene NamemiRNABeginEndProfile
Sec13mmu-miR-199a-5pbeg:105end:120pic:3' CTTGTCCATCAGAC-TTGTGACCC 5'& || ||||||||| &5' ------------TGCAACACTGGG 3'
Sec13mmu-miR-199bstarbeg:108end:120pic:3' CTTGTCCATCAGATTTGTGACCC 5'& ||||||||| &5' --------------AACACTGGG 3'
Sec13mmu-miR-466b-5pbeg:94end:109pic:3' GTACATGTACATGTGTGTGTAG 5'& ||.| ||||||| &5' ---------GTGCCCACACAT- 3'
Sec13mmu-miR-466e-5pbeg:94end:109pic:3' ATACATGTACATGTGTGTGTAG 5'& ||.| ||||||| &5' ---------GTGCCCACACAT- 3'
Sec13mmu-miR-466a-5pbeg:94end:110pic:3' ATACATGTACATGTGTGTGTAT 5'& ||.| |||||||. &5' ---------GTGCCCACACATG 3'
Sec13mmu-miR-763beg:162end:173pic:3' CGGTGACCAAGAAGGGTCGACC 5'& .||||||| &5' -------------TCCAGCTG- 3'
Sec13mghv-miR-M1-1beg:217end:229pic:3' TTTCCTTCATGCCGGTAAAGAT 5'& ||||||||.|| &5' -----------GGCCATTTTTA 3'
Sec13mmu-let-7abeg:245end:271pic:3' TTGATATGTTGGATGATGG-AGT 5'& |.|||| ||| ||| || ||| &5' AGCTATCCAAGCTAATAAAATCA 3'
Sec13mmu-let-7cbeg:245end:271pic:3' TTGGTATGTTGGATGATGG-AGT 5'& |.|.|| ||| ||| || ||| &5' AGCTATCCAAGCTAATAAAATCA 3'
Sec13mmu-let-7ebeg:123end:134pic:3' TTGATATGTTGGAGGATGGAGT 5'& |||.|||.| &5' -------------CCTGCCTTA 3'
Sec13mmu-miR-1186bbeg:125end:146pic:3' CACCACGTACGGAAA----TTAGGGT 5'& |||||| .|||||| &5' --------TGCCTTACTGGGATCCCA 3'
Sec13mmu-miR-124beg:115end:135pic:3' CCGTAAGTGGCGCACGGAAT 5'& ||..|||||| ||||||| &5' GGTGTTCACC---TGCCTTA 3'
Sec13mmu-miR-125a-3pbeg:112end:130pic:3' CCGAGGGTTCTTGGAGTGGACA 5'& | .| .||||||| &5' -----CTGGGTG-TTCACCTG- 3'
Sec13mmu-miR-1937abeg:126end:142pic:3' ACCCCCGAGCAGGCCCTAA 5'& || |.||||| &5' -----GCCTTACTGGGAT- 3'
Sec13mmu-miR-194beg:9end:30pic:3' AGGTGTACCTCAACGACAATGT 5'& .| ||| || ||||||| &5' ---GCCTGGCCTTCCTGTTAC- 3'
Sec13mmu-miR-1955beg:124end:142pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& |||| ||||||. &5' -----CTGCCTTA----CTGGGAT- 3'
Sec13mmu-miR-2132beg:116end:132pic:3' GTAGCGCAGTTGTGGGCGG 5'& |.||. ||||.||| &5' ----GTGTT--CACCTGCC 3'
Sec13mmu-miR-2140beg:72end:94pic:3' TGGTGGTTCTAGAC-GTGGA 5'& .|.||||||||. |||| &5' GCTACCAAGATTCCACACC- 3'
Sec13mmu-miR-2145beg:8end:28pic:3' TTGGTCCGGGCTGGGACGA 5'& |.|| ||||. .||||.| &5' AGCCTGGCCT--TCCTGTT 3'
Sec13mmu-miR-214starbeg:0end:12pic:3' CGTGTCGTTCACATCTGTCCGT 5'& |||| ||||||| &5' ---CAGC--------ACAGGCA 3'
Sec13mmu-miR-297b-5pbeg:94end:112pic:3' TGTACAAGTACG--TGTGTATGTA 5'& .||| ||||||.|| &5' --------GTGCCCACACATGCA- 3'
Sec13mmu-miR-30astarbeg:158end:177pic:3' CGACGTTTGTAGGCTGACTTTC 5'& |||.||| .||||||| &5' ------AACGTCCAGCTGAAAG 3'
Sec13mmu-miR-30estarbeg:158end:177pic:3' CGACATTTGTAGGCTGACTTTC 5'& |||.||| .||||||| &5' ------AACGTCCAGCTGAAAG 3'
Sec13mmu-miR-380-3pbeg:264end:280pic:3' TTCTACACCTGGTATGATGTAT 5'& |.||||.|.|||| &5' ---------ATCATATTGCATA 3'
Sec13mmu-miR-449cbeg:275end:294pic:3' GGTCGATCGTTAC-GTGACGGA 5'& ||| .||||.| &5' -----TAGAAACTTTACTGTC- 3'
Sec13mmu-miR-453beg:1end:16pic:3' ACGTTCGAGTGATACTCCGTTGGA 5'& ||| |||||.||| &5' --------CAC----AGGCAGCCT 3'
Sec13mmu-miR-466fbeg:92end:110pic:3' TGTACGTGTACGTGTGTGTGCA 5'& | .||| ||||||.| &5' ----GA--GTGCCCACACATG- 3'
Sec13mmu-miR-470beg:65end:85pic:3' TGAGTGGTCACGGTCAGGTTCTT 5'& || |||||||.| |||||| &5' --TC-CCAGTGCTA--CCAAGA- 3'
Sec13mmu-miR-493beg:3end:23pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& || .||| |.||||| &5' -----CAGGCAGCCTGGCCTTC- 3'
Sec13mmu-miR-669abeg:94end:114pic:3' TGTACTTGTACGTGTGTGTTGA 5'& .|| || ||||..|||| &5' --GTGCCCA--CACATGCAAC- 3'
Sec13mmu-miR-669h-5pbeg:91end:112pic:3' CGTGAGTTGATATGTGGGTACGTA 5'& |.| |. ||| |||||| &5' -----CGAGTGCCCACACATGCA- 3'
Sec13mmu-miR-690beg:8end:22pic:3' AAACCAACAC-TCGGATCGGAAA 5'& | |||||.||||| &5' ---------GCAGCCTGGCCTT- 3'
Sec13mmu-miR-98beg:124end:134pic:3' TTGTTATGTTGAATGATGGAGT 5'& ||.|||.| &5' --------------CTGCCTTA 3'
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
Sec13RAID00003080mmu-miR-200b-3pmiRNAMIMAT0000233Sec13mRNA110379Prediction0.1828
Sec13RAID00046883mmu-miR-125a-3pmiRNAMIMAT0004528Sec13mRNA110379CLIP-seq//Prediction0.6478
Sec13RAID00458070mmu-miR-429-3pmiRNAMIMAT0001537Sec13mRNA110379Prediction0.1828
Sec13RAID00566661mmu-miR-193b-3pmiRNAMIMAT0004859Sec13mRNA110379Prediction0.1828
Sec13RAID01033710mmu-miR-199a-5pmiRNAMIMAT0000229Sec13mRNA110379CLIP-seq//Prediction0.6308
Sec13RAID01035312mmu-miR-7673-3pmiRNAMIMAT0029853Sec13mRNA110379Prediction0.1828
Sec13RAID01154626mmu-miR-6377miRNAMIMAT0025122Sec13mRNA110379Prediction0.1828
Sec13RAID01350294mmu-miR-200c-3pmiRNAMIMAT0000657Sec13mRNA110379Prediction0.1828
Sec13RAID01537693mmu-miR-763miRNAMIMAT0003896Sec13mRNA110379Prediction0.1828
Sec13RAID01915547mmu-miR-5624-3pmiRNAMIMAT0022378Sec13mRNA110379Prediction0.1828
Sec13RAID02016422mmu-miR-124-3pmiRNAMIMAT0000134Sec13mRNA110379CLIP-seq//Prediction0.6478
Sec13RAID02102348mmu-miR-375-3pmiRNAMIMAT0000739Sec13mRNA110379Prediction0.1828
Sec13RAID02429910mmu-miR-194-5pmiRNAMIMAT0000224Sec13mRNA110379Prediction0.1828
Sec13RAID02672790mmu-miR-365-3pmiRNAMIMAT0000711Sec13mRNA110379Prediction0.1828
Sec13RAID02765753mmu-miR-193a-3pmiRNAMIMAT0000223Sec13mRNA110379Prediction0.1828
Sec13RAID02920665mmu-miR-3088-5pmiRNAMIMAT0014897Sec13mRNA110379Prediction0.1828
Sec13RAID03270170mmu-miR-590-3pmiRNAMIMAT0004896Sec13mRNA110379Prediction0.1828
Sec13RAID03354968mmu-miR-374b-5pmiRNAMIMAT0003727Sec13mRNA110379Prediction0.1828
Sec13RAID03969271mmu-miR-6540-5pmiRNAMIMAT0025585Sec13mRNA110379Prediction0.2202
Sec13RAID03999969mmu-miR-378a-3pmiRNAMIMAT0003151Sec13mRNA110379CLIP-seq//Prediction0.6308