DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Ift122 ATTTA 142-3693 3851-3855

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004524 mmu-miR-30b* 81896 Ift122 cugcaUUUGUAGGUGUAG-GGUc :|| || | |||| ||| gaaacGAAGAUGCUCAUCACCAa 2 18 2337 2359 [mm9:6:115860270-115860292:+] 0.7555 121 0 -13.48 -0.1165 MIMAT0004533 mmu-miR-141* 81896 Ift122 agGUUGU-GACGUGACCUUCUAc ||::| || |: ||||||| acCAGUACCUCGAUAGGAAGAUg 2 21 1966 1988 [mm9:6:115849510-115849532:+] 0.7566 155 7 -25.33 -0.2651 MIMAT0004534 mmu-miR-145* 81896 Ift122 guUCUUGUCAUAAAGGUCCUUa :|||| | |||||||||| aaGGAACUGCUUUUCCAGGAAc 2 21 1737 1758 [mm9:6:115842030-115842047,115844240-115844243:+] 0.7072 172 7 -22.73 -0.1363 MIMAT0004542 mmu-miR-191* 81896 Ift122 cccUUGCUUUAGGUUCACGUCg |:: |:: ::|||||||| gaaAGUUAGGAUUAAGUGCAGa 2 20 1244 1265 [mm9:6:115837379-115837383,115838739-115838755:+] 0.7622 155 7 -16.16 -0.7382 MIMAT0004542 mmu-miR-191* 81896 Ift122 cccUUGCUUUAGGUUC-ACGUCg ||:||: | ||| ||||| aucAAUGAGCCCAAAGCUGCAGu 2 20 2382 2404 [mm9:6:115860315-115860337:+] 0.7555 127 0 -16.31 -0.1037 MIMAT0004542 mmu-miR-191* 81896 Ift122 cccuugcUUUAGGUUCA-CGUCg |:|| :|||| |||| gugcugcAGAUGUAAGUGGCAGu 2 16 547 569 [mm9:6:115830720-115830728,115831356-115831369:+] 0.6164 123 0 -15.04 -0.1473 MIMAT0000240 mmu-miR-207 81896 Ift122 cucccucCUCUCGGUCCUCUUCg || |:::||||||| guccccaGACUGUUGGGAGAAGg 2 17 45 67 [mm9:6:115876388-115876410:+] 0.4057 152 7 -16.63 -0.1314 MIMAT0000240 mmu-miR-207 81896 Ift122 cucccuCCUCUCG-GUCCUCUUCg ||| | :|||||||| gaccauGGACUCCAUAGGAGAAGa 2 18 3817 3840 [mm9:6:115875459-115875482:+] 0.7007 148 7 -18.44 -0.4294 MIMAT0004573 mmu-miR-293* 81896 Ift122 guUUUACAGUGUGUCAAACUCa || ||||| : |||||||| aaAAUUGUCAAGAAGUUUGAGu 2 21 1386 1407 [mm9:6:115838876-115838897:+] 0.6684 172 7 -20.43 -0.1728 MIMAT0004573 mmu-miR-293* 81896 Ift122 guuuuacAGUGUGU-CAAACUCa || ::|| ||||||| acugaccUC-UGCAUGUUUGAGu 2 16 2280 2301 [mm9:6:115855945-115855966:+] 0.7822 144 7 -13.68 -0.2627 MIMAT0004574 mmu-miR-294* 81896 Ift122 ucUAU-CCCGGAG--GUA-AAACUCa ||| | |||| ||| |||||| guAUACUGACCUCUGCAUGUUUGAGu 2 21 2276 2301 [mm9:6:115855941-115855966:+] 0.7822 126 6 -15.21 -0.1333 MIMAT0000376 mmu-miR-298 81896 Ift122 cccUUCUUGUCGGGAGGAGACGg | | |:| |: ||||||| gacAUGUAUA-CUGACCUCUGCa 2 21 2271 2292 [mm9:6:115855936-115855957:+] 0.7822 146 7 -18.47 -0.5464 MIMAT0000376 mmu-miR-298 81896 Ift122 cccUUCUUGUCGGGAGGAGACGg :||| || : ||||||| uauGAGAUAAG--UACCUCUGCa 2 21 3201 3221 [mm9:6:115867999-115868019:+] 0.5055 145 7 -18.47 -0.2957 MIMAT0004578 mmu-miR-300* 81896 Ift122 uguuucCUAUUGGAGAGAAGUu || |||| ||||||| cucccuGA-AACC-CUCUUCAa 2 17 3308 3327 [mm9:6:115870390-115870409:+] 0.6773 152 7 -16.71 -0.1180 MIMAT0000384 mmu-let-7d* 81896 Ift122 ucUUUCCGUCGUCCAG-CAUAUc || |||| || || ||||| ccAAUGGCAUCA--UCAGUAUAc 2 21 733 753 [mm9:6:115831533-115831553:+] 0.7322 125 0 -9.34 -0.1910 MIMAT0004636 mmu-miR-93* 81896 Ift122 gcccuUCACGAUCGAGUCGUCa || || | ||||||| uaccuAGAACU-GAUCAGCAGu 2 18 2121 2141 [mm9:6:115852903-115852923:+] 0.6805 147 7 -16.75 -0.2257 MIMAT0000544 mmu-miR-129-3p 81896 Ift122 uacGAAAAACCCCAUUCCCGAa ||||| | ||||||| uuaCUUUUAG----AAGGGCUc 2 20 243 260 [mm9:6:115876586-115876603:+] 0.6159 146 7 -13.82 -0.7972 MIMAT0000544 mmu-miR-129-3p 81896 Ift122 uacgaaaaaccccaUUCCCGAa ||||||| auaacgacaaauaaAAGGGCUa 2 9 339 360 [mm9:6:115876682-115876703:+] 0.6933 140 7 -10.72 -1.2634 MIMAT0000544 mmu-miR-129-3p 81896 Ift122 uacGAAAAACCCCAUUCCCGAa ||||| | ||||||| uuaCUUUUAG----AAGGGCUc 2 20 4369 4386 [mm9:6:115876586-115876603:+] 0.6159 146 7 -13.82 -0.1170 MIMAT0000544 mmu-miR-129-3p 81896 Ift122 uacgaaaaaccccaUUCCCGAa ||||||| auaacgacaaauaaAAGGGCUa 2 9 4465 4486 [mm9:6:115876682-115876703:+] 0.6933 140 7 -10.72 -0.6114 MIMAT0004640 mmu-miR-325 81896 Ift122 aacuauccuccAC-GAGUUAUUu || |||||||| ugccaacagauUGCCUCAAUAAc 2 12 321 343 [mm9:6:115876664-115876686:+] 0.6933 146 7 -7.42 -0.5215 MIMAT0000571 mmu-miR-331-3p 81896 Ift122 aagauccuauccgGGUCCCCg ||||||| auguguuuuccuaCCAGGGGa 2 9 2194 2214 [mm9:6:115855859-115855879:+] 0.7822 140 7 -17.17 -0.4863 MIMAT0000586 mmu-miR-340-3p 81896 Ift122 cgAUAUUUCAUUG-ACUCUGCCu || | || | | ||||||| ugUAAAUAGCACCAGGAGACGGg 2 21 178 200 [mm9:6:115876521-115876543:+] 0.6828 151 7 -19.11 -0.3899 MIMAT0004660 mmu-miR-19a* 81896 Ift122 caucACGUUGAUACGUUUUGAu || | || ||||||| uaucUGGACCU---CAAAACUu 2 19 373 391 [mm9:6:115825302-115825320:+] 0.6765 142 7 -7.97 -0.1258 MIMAT0004662 mmu-miR-139-3p 81896 Ift122 gaGGUUGUCCCGGCGCAGAGGu || || | | ||||||| aaCCCUCA-GAACACGUCUCCu 2 21 73 93 [mm9:6:115876416-115876436:+] 0.5149 146 7 -22.37 -0.4500 MIMAT0000706 mmu-miR-362-5p 81896 Ift122 uaaGUGUGGAUCCA--AGGUUCCUAa ||::::|: || |||||||| cugCAUGUUUGAGUACGCCAAGGAUu 2 22 2288 2313 [mm9:6:115855953-115855974,115860243-115860246:+] 0.7688 156 7 -23.44 -0.1217 MIMAT0000742 mmu-miR-378* 81896 Ift122 ugUGUCCUGGACCUCAGUCCUc :| | ::|| ||||||| gaGCUGAGUCU-AUGUCAGGAa 2 21 572 592 [mm9:6:115831372-115831392:+] 0.5217 142 7 -15.52 -0.1291 MIMAT0000744 mmu-miR-380-5p 81896 Ift122 gcguACAAGAUACC---AG-UUGGUa ||| | |||| || ||||| gagcUGUACCAUGGCUAUCAAACCAu 2 19 3124 3149 [mm9:6:115867047-115867072:+] 0.7164 121 0 -15.41 -0.1075 MIMAT0004759 mmu-miR-466a-5p 81896 Ift122 auaCAUGUACAUGUGUGUGUAu | | : | |||||||||| cggGGAAGAGAACACACACAUa 2 20 197 218 [mm9:6:115876540-115876561:+] 0.6828 159 7 -17.27 -1.2783 MIMAT0004759 mmu-miR-466a-5p 81896 Ift122 auaCAUGUACAUGUGUGUGUAu | | : | |||||||||| cggGGAAGAGAACACACACAUa 2 20 4323 4344 [mm9:6:115876540-115876561:+] 0.6828 159 7 -17.27 -0.6675 MIMAT0002111 mmu-miR-470 81896 Ift122 ugaguggucacggucAGGUUCUu ||:|||| aacacacacauauuuUCUAAGAa 2 9 207 229 [mm9:6:115876550-115876572:+] 0.6494 124 0 -12.80 -0.2072 MIMAT0002889 mmu-miR-532-5p 81896 Ift122 ugCCAGGA--UGUGAG-UUCCGUAc || ||| | |||: ||||||| cuGGACCUCAAAACUUGAAGGCAUu 2 21 376 400 [mm9:6:115825305-115825329:+] 0.6765 158 7 -19.07 -0.1290 MIMAT0002889 mmu-miR-532-5p 81896 Ift122 ugCCAGGAUGUGAGUUC-CGUAc || :||:| |||| |||| cuGGAUCUGCUGACAAGAGCAUc 2 21 348 370 [mm9:6:115825277-115825299:+] 0.6486 124 0 -18.29 -0.1423 MIMAT0004781 mmu-miR-532-3p 81896 Ift122 acguucGGAACCCACACCCUCc | || | ||||||| agaguaCAUUUUG-GUGGGAGg 2 17 977 997 [mm9:6:115836986-115837006:+] 0.7628 142 7 -21.85 -0.1490 MIMAT0015219 mmu-miR-3475 81896 Ift122 aaguuUGGUACACGGAGGUCu |:| ||| ||||||| cuggcAUCUUGUUCCUCCAGu 2 17 461 481 [mm9:6:115827542-115827562:+] 0.7259 160 7 -19.04 -0.2367 MIMAT0014815 mmu-miR-3099* 81896 Ift122 guucccGACCUUCCUUCGACc || || ||||||| uugcuaCUUUAA-GAAGCUGg 2 16 2537 2556 [mm9:6:115862509-115862528:+] 0.7314 145 7 -15.73 -0.1765 MIMAT0003896 mmu-miR-763 81896 Ift122 cggUGACCAAGAAG--GGUCGACc ||| | |||| ||||||| gaaACU-UUCCUUCUACCAGCUGa 2 20 884 906 [mm9:6:115834396-115834418:+] 0.7277 152 7 -16.52 -0.3755 MIMAT0003896 mmu-miR-763 81896 Ift122 cgguGACCAAGAAGGGUCGACc ||| | | ||||||| aaucCUGUUACCCACCAGCUGg 2 19 443 464 [mm9:6:115827524-115827545:+] 0.7259 150 7 -22.07 -0.1106 MIMAT0003896 mmu-miR-763 81896 Ift122 cggUGACCAA--GAAGGGUCGACc |: | || || :||||||| aaaAUCGAUUAGCUAUCCAGCUGc 2 20 1294 1317 [mm9:6:115838784-115838807:+] 0.7775 150 7 -18.57 -0.2673 MIMAT0003477 mmu-miR-669a 81896 Ift122 uguacuugUACGUGUGUGUUGa ||| | ||||||| uaagccugAUGGA-ACACAACu 2 15 199 219 [mm9:6:115812751-115812771:+] 0.7307 148 7 -13.70 -0.1220 MIMAT0003741 mmu-miR-674* 81896 Ift122 aacAAGACUCUACCCUCGACAc | || | | ||||||| agaUCCUCAUCUACGAGCUGUa 2 20 1324 1345 [mm9:6:115838814-115838835:+] 0.7229 147 7 -10.25 -0.2808 MIMAT0003741 mmu-miR-674* 81896 Ift122 aacAAGACUCU--ACC--CUCGACAc ||| | | ||| ||||||| cacUUCCAACACCUGGCUGAGCUGUa 2 20 3106 3131 [mm9:6:115867029-115867054:+] 0.7164 145 7 -13.07 -0.1948 MIMAT0003449 mmu-miR-488* 81896 Ift122 aacUCUCACGAUAAUAGACCc |||| : ||||||||| acaAGAGCAUCAUUAUCUGGa 2 19 360 380 [mm9:6:115825289-115825309:+] 0.6765 162 7 -16.11 -0.3511 MIMAT0003451 mmu-miR-677 81896 Ift122 agUCUUCGAUUAGUAGUGACUu :|||| :: |||||||| cuGGAAG-AGGGGAUCACUGAc 2 21 3692 3712 [mm9:6:115874391-115874411:+] 0.6801 150 7 -16.87 -0.1255 MIMAT0004825 mmu-miR-423-5p 81896 Ift122 uuucagAGCGAGAGACGGGGAGu || | | |||||||| ccuccaUCACCAUGUGCCCCUCc 2 18 4005 4027 [mm9:6:115875904-115875926:+] 0.8054 153 7 -18.66 -0.1838 MIMAT0003455 mmu-miR-679 81896 Ift122 ugguucUC-AGUGGA----GUGUCAGg || |||:|| ||||||| ucuaccAGCUCAUCUUCAGCACAGUCc 2 17 1141 1167 [mm9:6:115837276-115837302:+] 0.7469 146 7 -26.39 -0.1012 MIMAT0003457 mmu-miR-680 81896 Ift122 ggggguACAGUCGUCU-ACGGg || || |||| |||| acacguUGCCAACAGAUUGCCu 2 16 315 336 [mm9:6:115876658-115876679:+] 0.6933 123 0 -15.30 -1.0252 MIMAT0003457 mmu-miR-680 81896 Ift122 ggggguACAGUCGUCU-ACGGg || || |||| |||| acacguUGCCAACAGAUUGCCu 2 16 4441 4462 [mm9:6:115876658-115876679:+] 0.6933 123 0 -15.30 -0.2282 MIMAT0003462 mmu-miR-684 81896 Ift122 aacugaACUUCCCUUUUGa |||: ||||||| accagcUGAGUGGAAAACa 2 14 898 916 [mm9:6:115834410-115834428:+] 0.7277 153 7 -12.63 -0.2965 MIMAT0003468 mmu-miR-689 81896 Ift122 ccugGGGCGGCUCGCCCCUGc ||:| || ||||||| ccuaCCUGAAGAUCGGGGACc 2 18 2581 2601 [mm9:6:115862553-115862573:+] 0.7314 157 7 -25.15 -0.1059 MIMAT0003474 mmu-miR-694 81896 Ift122 gaaGUCCGU-UGUAAAAGuc || || |:|||||| gaaCACACACAUAUUUUCua 3 17 206 225 [mm9:6:115876549-115876568:+] 0.6828 131 0 -6.84 -0.3148 MIMAT0003483 mmu-miR-696 81896 Ift122 ggGU-GUCGUUCGUGUGCg || :| |: ||||||| acCAUUACCGUGCACACGu 2 17 302 320 [mm9:6:115876645-115876663:+] 0.6933 147 7 -20.36 -0.9310 MIMAT0003483 mmu-miR-696 81896 Ift122 ggGU-GUCGUUCGUGUGCg || :| |: ||||||| acCAUUACCGUGCACACGu 2 17 4428 4446 [mm9:6:115876645-115876663:+] 0.6933 147 7 -20.36 -0.1708 MIMAT0003742 mmu-miR-455 81896 Ift122 cacauAUACGG-GCACCUGACg | ||:| : ||||||| acggcUUUGUCAUAUGGACUGa 2 17 3160 3181 [mm9:6:115867083-115867085,115867961-115867979:+] 0.6110 147 7 -16.36 -0.4506 MIMAT0003499 mmu-miR-709 81896 Ift122 aggaggacggaGACGGAGg :|||||| uugccaacagaUUGCCUCa 2 9 320 338 [mm9:6:115876663-115876681:+] 0.6933 124 6 -16.16 -0.2160 MIMAT0003502 mmu-miR-712 81896 Ift122 ccauggcgggCCCACUUCCUc | |||||||| uccuucagugGAGUGAAGGAa 2 12 1473 1493 [mm9:6:115840503-115840523:+] 0.7077 147 7 -19.38 -0.1279 MIMAT0004236 mmu-miR-741 81896 Ift122 agaugUAUC--UUACCGUAGAGAGu ||:| :|||| ||||||| agggaAUGGCAGAUGGAAUCUCUCa 2 19 1494 1518 [mm9:6:115840524-115840548:+] 0.7077 161 7 -22.14 -0.1320 MIMAT0004848 mmu-miR-883a-5p 81896 Ift122 caUUGACGAUGAAGAGAGUCGu |: || ||| ||||||| ggAGAUG-UAC--AUCUCAGCa 2 21 2405 2423 [mm9:6:115860338-115860356:+] 0.7555 143 7 -15.59 -0.1522 MIMAT0004867 mmu-miR-327 81896 Ift122 uaggaguacggGGAGUUca |||||| ccaacagauugCCUCAAua 3 9 323 341 [mm9:6:115876666-115876684:+] 0.6933 120 0 -8.68 -0.1027 MIMAT0004875 mmu-miR-466b-5p 81896 Ift122 guaCAUGUACAUGUGUGUGUAg | | : | |||||||||| cggGGAAGAGAACACACACAUa 2 20 197 218 [mm9:6:115876540-115876561:+] 0.6828 159 7 -17.20 -1.2783 MIMAT0004875 mmu-miR-466b-5p 81896 Ift122 guaCAUGUACAUGUGUGUGUAg | | : | |||||||||| cggGGAAGAGAACACACACAUa 2 20 4323 4344 [mm9:6:115876540-115876561:+] 0.6828 159 7 -17.20 -0.6675 MIMAT0004877 mmu-miR-466c-5p 81896 Ift122 auaCAUGUACGUGUGUGUGUAg | | : | |||||||||| cggGGAAGAGAACACACACAUa 2 20 197 218 [mm9:6:115876540-115876561:+] 0.6828 159 7 -16.04 -1.2783 MIMAT0004877 mmu-miR-466c-5p 81896 Ift122 auaCAUGUACGUGUGUGUGUAg | | : | |||||||||| cggGGAAGAGAACACACACAUa 2 20 4323 4344 [mm9:6:115876540-115876561:+] 0.6828 159 7 -16.04 -0.6675 MIMAT0004879 mmu-miR-466e-5p 81896 Ift122 auaCAUGUACAUGUGUGUGUAg | | : | |||||||||| cggGGAAGAGAACACACACAUa 2 20 197 218 [mm9:6:115876540-115876561:+] 0.6828 159 7 -15.77 -1.2783 MIMAT0004879 mmu-miR-466e-5p 81896 Ift122 auaCAUGUACAUGUGUGUGUAg | | : | |||||||||| cggGGAAGAGAACACACACAUa 2 20 4323 4344 [mm9:6:115876540-115876561:+] 0.6828 159 7 -15.77 -0.6675 MIMAT0004881 mmu-miR-466f-5p 81896 Ift122 guacGUGUACGUGUGUGUGCAu ||: |:::||||||| agacCAUUACCGUGCACACGUu 2 19 300 321 [mm9:6:115876643-115876664:+] 0.6933 150 7 -18.16 -0.6323 MIMAT0004881 mmu-miR-466f-5p 81896 Ift122 guaCGUGUACGUGUGUGUGCAu | | : | |||||||| | cggGGAAGAGAACACACACAUa 2 20 197 218 [mm9:6:115876540-115876561:+] 0.6828 127 0 -13.78 -0.1307 MIMAT0004884 mmu-miR-466h 81896 Ift122 auGUGUGUUCGU-GUACGUGUGu || || | :| |:||||||| guCAGACCAUUACCGUGCACACg 2 21 297 319 [mm9:6:115876640-115876662:+] 0.6933 159 7 -19.83 -0.5753 MIMAT0004890 mmu-miR-509-5p 81896 Ift122 uacUAACGGUGUAAGACCUCAu || || :| | ||||||| uucAUAGCAGCCUGCUGGAGUc 2 20 266 287 [mm9:6:115876609-115876630:+] 0.6933 159 7 -16.21 -0.1976 MIMAT0004897 mmu-miR-654-5p 81896 Ift122 ugUGUACAAGACGUCGA-AUGGu || || ||| |||| |||| acACCUG-GCUG-AGCUGUACCa 2 21 3114 3134 [mm9:6:115867037-115867057:+] 0.7164 120 0 -19.99 -0.1182 MIMAT0004930 mmu-miR-466d-5p 81896 Ift122 guacauguacaugcGUGUGUGu ||||||| gacggggaagagaaCACACACa 2 9 195 216 [mm9:6:115876538-115876559:+] 0.6828 140 7 -15.44 -1.2947 MIMAT0004930 mmu-miR-466d-5p 81896 Ift122 guacauguacaugcGUGUGUGu ||||||| gacggggaagagaaCACACACa 2 9 4321 4342 [mm9:6:115876538-115876559:+] 0.6828 140 7 -15.44 -0.7409 MIMAT0004862 mmu-miR-877* 81896 Ift122 acccuccucccucuUCUCCUGu ||||||| cagauguuccauucAGAGGACu 2 9 4034 4055 [mm9:6:115875933-115875935,115876254-115876272:+] 0.7826 140 7 -11.14 -0.1148 MIMAT0005830 mmu-miR-466l 81896 Ift122 uuauacacacguacAUAAAUAu ||||||| aaccacagauuuccUAUUUAUg 2 9 143 164 [mm9:6:115876486-115876507:+] 0.6209 140 7 -3.76 -0.3488 MIMAT0005833 mmu-miR-669d 81896 Ift122 ugUAUAUGUACGUG----UGUGUUCa || |: | |||| ||||||| cgAUCUGGAGGCACCAAGACACAAGa 2 21 3733 3758 [mm9:6:115874432-115874457:+] 0.6380 151 7 -13.65 -0.1009 MIMAT0005837 mmu-miR-1187 81896 Ift122 aauguguguaugUGUGUGUGUAu |||||||||| acggggaagagaACACACACAUa 2 12 196 218 [mm9:6:115876539-115876561:+] 0.6828 155 7 -18.91 -1.2773 MIMAT0005837 mmu-miR-1187 81896 Ift122 aauguguguaugUGUGUGUGUAu |||||||||| acggggaagagaACACACACAUa 2 12 4322 4344 [mm9:6:115876539-115876561:+] 0.6828 155 7 -18.91 -0.6638 MIMAT0005844 mmu-miR-466f 81896 Ift122 uguaCGUGUACGUGUGUGUGca | | : | |||||||| acggGGAAGAGAACACACACau 3 19 196 217 [mm9:6:115876539-115876560:+] 0.6828 134 0 -15.07 -0.1346 MIMAT0005845 mmu-miR-466k 81896 Ift122 agUGUACAUGUACAUGUGUGUGu ||: | | : | |||||||| agACGGGGAAGAGAACACACACa 2 22 194 216 [mm9:6:115876537-115876559:+] 0.6828 157 7 -16.90 -1.2940 MIMAT0005845 mmu-miR-466k 81896 Ift122 agUGUACAUGUACAUGUGUGUGu ||: | | : | |||||||| agACGGGGAAGAGAACACACACa 2 22 4320 4342 [mm9:6:115876537-115876559:+] 0.6828 157 7 -16.90 -0.7372 MIMAT0005848 mmu-miR-466j 81896 Ift122 aauGUGU-GUACGUGUACGUGUGu || | ||| |:||||||| cguCAGACCAUUACCGUGCACACg 2 21 296 319 [mm9:6:115876639-115876662:+] 0.6933 155 7 -19.84 -0.5717 MIMAT0005853 mmu-miR-669e 81896 Ift122 uaCUUGUACGUGUGUGUU-CUGu ||| :| |||:||||| ||| cuGAA-GUACACGCACAACGACu 2 21 401 422 [mm9:6:115825330-115825340,115827493-115827503:+] 0.7012 134 0 -19.15 -0.1377 MIMAT0005859 mmu-miR-1198 81896 Ift122 ggUUCGGUCGGUC-CUUGUGUau |: | :| || ||||||| ggAGACGGGGAAGAGAACACAca 3 21 192 214 [mm9:6:115876535-115876557:+] 0.6828 131 0 -15.42 -0.1195 MIMAT0007863 mmu-miR-1902 81896 Ift122 uuCAGUACGGAUGACGUGGAGa ||||| | |:| ||||||| acGUCAU-CGUGCAGCACCUCa 2 21 1213 1233 [mm9:6:115837348-115837368:+] 0.7469 166 7 -21.40 -0.2035 MIMAT0007868 mmu-miR-1903 81896 Ift122 acAGAGUCCUUCUUCUUCUUCc | |:: |:|||:||||||| agUAUUGAGGAGAGGAAGAAGa 2 21 2139 2160 [mm9:6:115852921-115852929,115855813-115855825:+] 0.7313 168 7 -22.45 -0.1773 MIMAT0007874 mmu-miR-1904 81896 Ift122 ggaGGGAGGUCUCCUCGUCUUg |:| :|| | |||||||| cacCUCAUCACA-GAGCAGAAa 2 20 1227 1247 [mm9:6:115837362-115837382:+] 0.7469 157 7 -21.89 -0.2992 MIMAT0007877 mmu-miR-1894-5p 81896 Ift122 ucUCCGUCCACCAUCCCCUCUc ||| || | |||||||| agAGGAAGAAG--AGGGGAGAg 2 21 2149 2168 [mm9:6:115855814-115855833:+] 0.7822 153 7 -28.45 -0.2218 MIMAT0009392 mmu-miR-1929 81896 Ift122 gaGACGAGAU-AUUUCAGG-AUCUu | || ||: |::||||| |||| agCAGC-CUGCUGGAGUCCGUAGAu 2 22 271 294 [mm9:6:115876614-115876637:+] 0.6933 126 0 -19.16 -0.4298 MIMAT0009394 mmu-miR-1931 81896 Ift122 cgGUAGCGU--GGUCGGGAACGUa :|| ||| :|| :|||||:| uuUAUGGCAUUUCAUUCCUUGUAa 2 21 159 182 [mm9:6:115876502-115876525:+] 0.6828 143 0 -18.27 -0.1004 MIMAT0009396 mmu-miR-1933-5p 81896 Ift122 uuuGAUUCUGGCUUGUGGUACUGa | ||| || : ||||||| gcuCCAAGCCC---UUCCAUGACa 2 22 3528 3548 [mm9:6:115873424-115873444:+] 0.6996 145 7 -14.14 -0.2522 MIMAT0009404 mmu-miR-1940 81896 Ift122 uugacgaGGUGGAAGAGUCAGGAGGUa |:: | |||:: ||||||| ccaccagCUGGCAUCUUGUUCCUCCAg 2 21 454 480 [mm9:6:115827535-115827561:+] 0.7259 160 7 -22.78 -0.1134 MIMAT0009406 mmu-miR-1941-3p 81896 Ift122 uacccUCUAU-GACGAUUCUac | ||| :| |||||| cacacACAUAUUUUCUAAGAaa 3 17 209 230 [mm9:6:115876552-115876573:+] 0.6494 131 0 -6.64 -0.5754 MIMAT0009407 mmu-miR-1942 81896 Ift122 guuggUCUACUUCUGUA-GACu | || | ||||| ||| gaggaACAUAAUGACAUCCUGg 2 17 843 864 [mm9:6:115834355-115834376:+] 0.7277 120 0 -13.73 -0.1922 MIMAT0009418 mmu-miR-669l 81896 Ift122 uguauaugUACGUGUGUGUUGa ||| | ||||||| uaagccugAUGGA-ACACAACu 2 15 199 219 [mm9:6:115812751-115812771:+] 0.7307 148 7 -12.84 -0.1220 MIMAT0009421 mmu-miR-669o 81896 Ift122 uguAUUUG---UACGUGUGUGUUGAu |||:| ||| | |||||||| auuUAAGCCUGAUGGA-ACACAACUg 2 21 196 220 [mm9:6:115812748-115812772:+] 0.7307 157 7 -16.63 -0.1930 MIMAT0009423 mmu-miR-1952 81896 Ift122 gucuuccucCCACCUCu ||||||| caaugcuguGGUGGAGa 2 9 2985 3001 [mm9:6:115865983-115865999:+] 0.7517 140 7 -14.93 -0.1943 MIMAT0009430 mmu-miR-1957 81896 Ift122 caGUAUACG-AGAUGGU-GAc ||| | | ||||||| || acCAUCUCCUUCUACCAGCUc 2 18 1131 1151 [mm9:6:115837266-115837286:+] 0.7469 124 0 -12.25 -0.1439 MIMAT0009431 mmu-miR-1958 81896 Ift122 ugaaugacgaaggUGAAAGGAu |||||||| acuggggacagaaACUUUCCUu 2 10 874 895 [mm9:6:115834386-115834407:+] 0.7277 145 7 -14.10 -0.1431 MIMAT0009440 mmu-miR-1967 81896 Ift122 cguagaagaggggUCCUAGGAGu | ||||||| ccagcugccagagAAGAUCCUCa 2 11 1310 1332 [mm9:6:115838800-115838822:+] 0.7775 142 7 -20.52 -0.6751 MIMAT0009441 mmu-miR-1968 81896 Ift122 ucaGGUG-GUAGGAAUUGUC-GACGu :||: ::|:| ||:||| |||| ggcUCAUGUGUUCAUAGCAGCCUGCu 2 22 256 281 [mm9:6:115876599-115876624:+] 0.6546 128 0 -16.85 -0.2182 MIMAT0009441 mmu-miR-1968 81896 Ift122 ucAGGUGGUAGGAAUUGUCGACGu || |::| |: | ||||||| aaUCGAUUAGCUAU-CCAGCUGCc 2 23 1296 1318 [mm9:6:115838786-115838808:+] 0.7775 152 7 -16.41 -0.1301 MIMAT0009444 mmu-miR-1970 81896 Ift122 guuUCGGAUAGGGGUCAC-UGUGu || | ||: || ||| |||| gucAGACCAUUACC-GUGCACACg 2 21 297 319 [mm9:6:115876640-115876662:+] 0.6933 122 0 -18.87 -0.7779 MIMAT0009444 mmu-miR-1970 81896 Ift122 guuUCGGAUAGGGGUCAC-UGUGu || | ||: || ||| |||| gucAGACCAUUACC-GUGCACACg 2 21 4423 4445 [mm9:6:115876640-115876662:+] 0.6933 122 0 -18.87 -0.1110 MIMAT0009445 mmu-miR-1274a 81896 Ift122 accGCGGACUUGUCCCUGGACu | ||||:::: ||||||| gaaCUCCUGGGUGUGGACCUGu 2 20 1061 1082 [mm9:6:115837070-115837091:+] 0.7628 163 7 -27.07 -0.1227 MIMAT0009458 mmu-miR-1981 81896 Ift122 cgGUGCAGAUU-C-GGGUCGGA-AAUg || ||:||| | | | |||| ||| agCAGGUUUAACGACGCUGCCUAUUAu 2 23 3001 3027 [mm9:6:115865999-115866025:+] 0.7401 128 0 -16.39 -0.1114 MIMAT0012771 mmu-miR-432 81896 Ift122 gacGGGUGACUAGAUGAGGUUCu ||: :| | | ||||||| aacCCUCUUCAACAUCUCCAAGu 2 21 3316 3338 [mm9:6:115870398-115870420:+] 0.6773 152 7 -19.49 -0.2726 MIMAT0015640 mmu-miR-3470a 81896 Ift122 ggucGGACC---AGAUGUUUCACu |:||| ||| ||||||| ccccCUUGGGUAUCUCCAAAGUGa 2 18 3366 3389 [mm9:6:115870448-115870469,115873284-115873285:+] 0.7201 156 7 -21.94 -0.1072 MIMAT0000121 mmu-let-7g 81896 Ift122 uuGACAUGUUUG-AUGA-UGGAGu || ||| :: |||| ||||| cuCUCGACAUGUAUACUGACCUCu 2 21 2266 2289 [mm9:6:115855931-115855954:+] 0.7822 123 0 -14.41 -0.1538 MIMAT0000122 mmu-let-7i 81896 Ift122 uuGUCGUGUUUGAUGA-UGGAGu |: ||:: | |||| ||||| cuCGACAUGUA-UACUGACCUCu 2 21 2268 2289 [mm9:6:115855933-115855954:+] 0.7822 122 0 -13.81 -0.1538 MIMAT0000123 mmu-miR-1 81896 Ift122 uaUGUAUGAAGAAAUGUAAGGu |: ||: | || |||||| cuAUUUAUGGCAUUUCAUUCCu 2 21 156 177 [mm9:6:115876499-115876520:+] 0.6828 128 6 -8.98 -0.1143 MIMAT0000124 mmu-miR-15b 81896 Ift122 acauuuGGUACUACACG-ACGAu :|||| ||||| |||| cccugcUCAUG-UGUGCUUGCUa 2 17 2521 2542 [mm9:6:115862493-115862514:+] 0.7314 126 0 -19.47 -0.1551 MIMAT0000127 mmu-miR-29b 81896 Ift122 uuGUGAC---UAAAGUUUACC-ACGAu |:||| ||| : | ||| |||| gaCGCUGCCUAUUAUUACUGGAUGCUg 2 22 3013 3039 [mm9:6:115866011-115866037:+] 0.7286 120 0 -16.13 -0.1681 MIMAT0000151 mmu-miR-140 81896 Ift122 gauGGUAUCCCAUUUUGG--UGAc |::||| ||:||||| ||| gacCUGUAGAGUGAAACCUGACUc 2 20 1076 1099 [mm9:6:115837085-115837108:+] 0.7628 123 0 -18.26 -0.1893 MIMAT0000160 mmu-miR-150 81896 Ift122 guGACCAUGUUC--CCAACCCUCu ||| | || |||||||| ugCUGUCCCCAGACUGUUGGGAGa 2 21 41 64 [mm9:6:115876384-115876407:+] 0.4057 147 7 -20.85 -0.1512 MIMAT0000211 mmu-miR-182 81896 Ift122 gccacacuCAAGAUG-GUAACGGUUu || | || |:||||||| ccauuaccGUGC-ACACGUUGCCAAc 2 18 303 327 [mm9:6:115876646-115876670:+] 0.6933 150 7 -14.04 -0.4760 MIMAT0000224 mmu-miR-194 81896 Ift122 agguguaccucaacGACAAUGu ||||||| agaaaaaaaaaaauCUGUUACu 2 9 226 247 [mm9:6:115876569-115876590:+] 0.6494 140 7 -10.74 -1.2935 MIMAT0000224 mmu-miR-194 81896 Ift122 agguguaccucaacGACAAUGu ||||||| agaaaaaaaaaaauCUGUUACu 2 9 4352 4373 [mm9:6:115876569-115876590:+] 0.6494 140 7 -10.74 -0.7351 MIMAT0000236 mmu-miR-203 81896 Ift122 gaucaccaGGAU-UUGUAAAGUg ::|| ::||||||| auuuccuaUUUAUGGCAUUUCAu 2 15 151 173 [mm9:6:115876494-115876516:+] 0.6828 145 7 -13.35 -0.8844 MIMAT0000236 mmu-miR-203 81896 Ift122 gaucaccaGGAU-UUGUAAAGUg ::|| ::||||||| auuuccuaUUUAUGGCAUUUCAu 2 15 4277 4299 [mm9:6:115876494-115876516:+] 0.6828 145 7 -13.35 -0.1489 MIMAT0000239 mmu-miR-206 81896 Ift122 ggUGUGUGAAGGAAUGUAAGGu |: :|: | || |||||| cuAUUUAUGGCAUUUCAUUCCu 2 21 156 177 [mm9:6:115876499-115876520:+] 0.6828 124 6 -11.78 -0.1143 MIMAT0000366 mmu-miR-290-5p 81896 Ift122 uuUCAC-GGGGGUAU-CAAACUCa | || ||:|:: | ||||||| auACUGACCUCUGCAUGUUUGAGu 2 21 2278 2301 [mm9:6:115855943-115855966:+] 0.7822 154 7 -18.72 -0.2581 MIMAT0000366 mmu-miR-290-5p 81896 Ift122 uuUCACGGGGGUAUCAAACUCa | ||:| | |||||||| aaAUUGUCAAGA-AGUUUGAGu 2 21 1387 1407 [mm9:6:115838877-115838897:+] 0.6684 150 7 -15.16 -0.1829 MIMAT0000369 mmu-miR-292-5p 81896 Ift122 guuuuCUCGGGG-GU-CAAACUCa || |:|: || ||||||| auacuGACCUCUGCAUGUUUGAGu 2 18 2278 2301 [mm9:6:115855943-115855966:+] 0.7822 151 7 -16.80 -0.2627 MIMAT0000369 mmu-miR-292-5p 81896 Ift122 guUUUCUCGG-GGGUCAAACUCa ||| |:| |||||||| gaAAAUUGUCAAGAAGUUUGAGu 2 21 1385 1407 [mm9:6:115838875-115838897:+] 0.6684 147 7 -17.14 -0.1812 MIMAT0000381 mmu-miR-34c 81896 Ift122 cgUUAGUCGAUUGAU--GU-GACGGa ||||: :||:||| || ||||| aaAAUCGAUUAGCUAUCCAGCUGCCa 2 22 1294 1319 [mm9:6:115838784-115838809:+] 0.7775 136 0 -23.01 -0.1706 MIMAT0000382 mmu-miR-34b-5p 81896 Ift122 ugUUAGUCGAUUAAUGU-GACGGa :||:||||| | || ||||| ucGAUUAGCUA--UCCAGCUGCCa 2 22 1298 1319 [mm9:6:115838788-115838809:+] 0.7775 130 0 -22.74 -0.1706 MIMAT0000387 mmu-miR-130b 81896 Ift122 uaCGGGAAAGUAGUAACG-UGAc ||:| | ::| |||| ||| cuGCUCAUGUGUGCUUGCUACUu 2 21 2523 2545 [mm9:6:115862495-115862517:+] 0.7314 120 0 -9.52 -0.1798 MIMAT0000518 mmu-miR-196a 81896 Ift122 ggguuGUUGUAC-UUUGA-UGGAu |:||||| | ||| |||| gcucuCGACAUGUAUACUGACCUc 2 18 2265 2288 [mm9:6:115855930-115855953:+] 0.7822 128 0 -20.57 -0.3752 MIMAT0000521 mmu-let-7a 81896 Ift122 uuGAUAUGU-UGGAUGA-UGGAGu || ||| :: |||| ||||| cuCUCGACAUGUAUACUGACCUCu 2 21 2266 2289 [mm9:6:115855931-115855954:+] 0.7822 123 0 -14.73 -0.1553 MIMAT0000522 mmu-let-7b 81896 Ift122 uuGGUGUGUUGGAUGA-UGGAGu | |||: :: |||| ||||| cuCGACAU-GUAUACUGACCUCu 2 21 2268 2289 [mm9:6:115855933-115855954:+] 0.7822 122 0 -15.41 -0.1553 MIMAT0000525 mmu-let-7f 81896 Ift122 uuGAUAUGU-UAGAUGA-UGGAGu || ||| :| |||| ||||| cuCUCGACAUGUAUACUGACCUCu 2 21 2266 2289 [mm9:6:115855931-115855954:+] 0.7822 127 0 -14.43 -0.1553 MIMAT0000526 mmu-miR-15a 81896 Ift122 guguuuGGUAAUACACG-ACGAu :|| |:||||| |||| cccugcUCA-UGUGUGCUUGCUa 2 17 2521 2542 [mm9:6:115862493-115862514:+] 0.7314 122 0 -17.94 -0.1566 MIMAT0000528 mmu-miR-18a 81896 Ift122 gauagacGUGAUCUA-CGUGGAAu | || ||| ||||||| augacacCUCU-GAUGGCACCUUa 2 17 252 274 [mm9:6:115814387-115814409:+] 0.6751 149 7 -18.14 -0.1300 MIMAT0000536 mmu-miR-29c 81896 Ift122 auUGGCUAAAGUUUACC-ACGAu :|| ||| : | ||| |||| cuGCCUAUUAUUACUGGAUGCUg 2 21 3017 3039 [mm9:6:115866015-115866037:+] 0.7286 124 0 -11.50 -0.1681 MIMAT0000542 mmu-miR-34a 81896 Ift122 ugUUGGUCGAUUCUGU-GACGGu :|::|||| | || ||||| ucGAUUAGCU-AUCCAGCUGCCa 2 21 1298 1319 [mm9:6:115838788-115838809:+] 0.7775 122 0 -25.73 -0.1706 MIMAT0000582 mmu-miR-338-3p 81896 Ift122 guUGUUUUAGUGACU-ACGACCu :||::| || || |||||| cuGCAGGA-AACAGAUUGCUGGu 2 21 228 249 [mm9:6:115812780-115812799,115814383-115814384:+] 0.6961 122 6 -15.36 -0.1532 MIMAT0000658 mmu-miR-210 81896 Ift122 agucGGCGACAGUGUGCGUGUc |:| || ||||||||| cauuCUGAAGU-ACACGCACAa 2 19 397 417 [mm9:6:115825326-115825340,115827493-115827498:+] 0.7012 156 7 -21.03 -0.2721 MIMAT0000661 mmu-miR-214 81896 Ift122 ugacggacagacaCGGACGACa |||||||| uguguucauagcaGCCUGCUGg 2 10 262 283 [mm9:6:115876605-115876626:+] 0.6933 145 7 -16.21 -0.2503 MIMAT0000661 mmu-miR-214 81896 Ift122 ugACGGACAGACACGGACGACa || || | ||| ||||||| uuUG-CUAU-UGU-CCUGCUGa 2 21 1617 1635 [mm9:6:115841910-115841928:+] 0.7162 150 7 -20.66 -0.1890 MIMAT0000663 mmu-miR-218 81896 Ift122 ugUACCAAUCUA-GUUCGUGUu | | |: :| |||||||| agAAGUCUGUGUCCAAGCACAa 2 20 507 528 [mm9:6:115830680-115830701:+] 0.7006 146 7 -13.19 -0.1305 MIMAT0000664 mmu-miR-219 81896 Ift122 ucUUAACGCAAACCUGUUAGu |: | : | ||||||||| gaAGAUCUUUGUGGACAAUCu 2 20 1595 1615 [mm9:6:115841888-115841908:+] 0.7162 155 7 -15.12 -0.1694 MIMAT0000747 mmu-miR-382 81896 Ift122 gcUUAGGUGGUGCUUGUU-GAAg :|||: ::::|:|||| ||| aaGAUCU-UUGUGGACAAUCUUu 2 21 1596 1617 [mm9:6:115841889-115841910:+] 0.7162 122 0 -14.11 -0.1467 MIMAT0001076 mmu-miR-384-3p 81896 Ift122 uaacacuUGUUAAAGAUCCUUa |:| |||||| ||| cacacacAUAUUUUCUAAGAAa 2 16 209 230 [mm9:6:115876552-115876573:+] 0.6494 131 0 -7.12 -0.2316 MIMAT0001081 mmu-miR-196b 81896 Ift122 ggguuGUUGU-CCUUUGA-UGGAu |:||| | | ||| |||| gcucuCGACAUGUAUACUGACCUc 2 18 2265 2288 [mm9:6:115855930-115855953:+] 0.7822 120 0 -15.66 -0.3752 MIMAT0001542 mmu-miR-449a 81896 Ift122 ugGUCGAUUGUUAUGU-GACGGu |: :||:| || || ||||| auCGAUUAGCUAUCCAGCUGCCa 2 21 1297 1319 [mm9:6:115838787-115838809:+] 0.7775 128 0 -19.69 -0.1739 MIMAT0003169 mmu-miR-539 81896 Ift122 ugugUGGUUCCUAUUA-AAGAGg :||:| || :|| ||||| augaGCCGAAGA-GAUGUUCUCa 2 19 3926 3947 [mm9:6:115875825-115875846:+] 0.8054 120 0 -13.75 -0.1456 MIMAT0003188 mmu-miR-503 81896 Ift122 gacgucaugacaaGGGCGACGAu ||||||||| guucuaccaacaaCCCGCUGCUg 2 11 3579 3601 [mm9:6:115873919-115873941:+] 0.7863 150 7 -22.15 -0.1099 MIMAT0003893 mmu-miR-761 81896 Ift122 acACAGUCAAAGUGGGACGACg |||: | || ||||||| ugUGUUCAUAGCAGCCUGCUGg 2 21 262 283 [mm9:6:115876605-115876626:+] 0.6933 156 7 -22.87 -0.2503 MIMAT0003893 mmu-miR-761 81896 Ift122 acACAGUCAAAGUGGGACGACg | |:: | |:::||||||| cuUUUUGCUAUUGUCCUGCUGa 2 21 1614 1635 [mm9:6:115841907-115841928:+] 0.7162 156 7 -16.74 -0.2032 MIMAT0003450 mmu-miR-488 81896 Ift122 cuGGUUCUUUGUCGGA-AAGUu || ||||| ||| |||| cuCCCUGAAAC--CCUCUUCAa 2 20 3308 3327 [mm9:6:115870390-115870409:+] 0.6773 120 0 -14.99 -0.1255 MIMAT0003453 mmu-miR-497 81896 Ift122 auguuugGUGU-CACACG-ACGAc | || |||||| |||| gccccugCUCAUGUGUGCUUGCUa 2 16 2519 2542 [mm9:6:115862491-115862514:+] 0.7314 122 0 -17.44 -0.1597 MIMAT0003460 mmu-miR-449c 81896 Ift122 ggucGAUCGUUACGU-GACGGa :|||| || || ||||| ucgaUUAGCUAUCCAGCUGCCa 2 18 1298 1319 [mm9:6:115838788-115838809:+] 0.7775 129 0 -18.10 -0.1723 MIMAT0004858 mmu-miR-18b 81896 Ift122 gaUUGUCGUGAUCUA-CGUGGAAu :||| | || ||| ||||||| auGACACCUCU-GAUGGCACCUUa 2 22 252 274 [mm9:6:115814387-115814409:+] 0.6751 162 7 -21.34 -0.1300

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G069205 Ift122 Mus musculus 81896 19536157 0 0 R53003; MOUSE$IFT122_01; Binding factors: mmu-miR-344-3p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ift122 mmu-miR-129-3p beg:243 end:260 pic:3' TACGAAAAACCCCATTCCCGAA 5'& ||||| ||||||| &5' ---CTTTTAG----AAGGGCT- 3' Ift122 mmu-miR-129-3p beg:350 end:360 pic:3' TACGAAAAACCCCATTCCCGAA 5'& ||||||| &5' --------------AAGGGCT- 3' Ift122 mcmv-miR-m22-1 beg:186 end:203 pic:3' ACCGGAGCCATGCCTGCCCCTT 5'& || || ||||||||| &5' ---CCA-GGA---GACGGGGAA 3' Ift122 mmu-miR-466b-5p beg:203 end:218 pic:3' GTACATGTACATGTGTGTGTAG 5'& | |||||||||| &5' ---------GAACACACACAT- 3' Ift122 mmu-miR-466e-5p beg:203 end:218 pic:3' ATACATGTACATGTGTGTGTAG 5'& | |||||||||| &5' ---------GAACACACACAT- 3' Ift122 mmu-miR-466a-5p beg:203 end:219 pic:3' ATACATGTACATGTGTGTGTAT 5'& | ||||||||||| &5' ---------GAACACACACATA 3' Ift122 mmu-miR-1187 beg:205 end:220 pic:3' AATGTGTGTATGTGTGTGTGTAT 5'& |||||||||.|| &5' ----------ACACACACATAT- 3' Ift122 mmu-miR-466c-5p beg:206 end:221 pic:3' ATACATGTACGTGTGTGTGTAG 5'& ||||||||.||. &5' ----------CACACACATATT 3' Ift122 mmu-miR-1962 beg:0 end:16 pic:3' TACACAGGGTCACGGTCGGAGA 5'& ||| | |||||||| &5' --------CAGCGACAGCCTCT 3' Ift122 mmu-miR-485 beg:1 end:16 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& .|| |||||||| &5' ---------GCGA-CAGCCTCT 3' Ift122 mmu-miR-761 beg:264 end:283 pic:3' ACACAGTCAAAGTGGGACGACG 5'& || ||| || ||||||| &5' -GT-TCATAG-CAGCCTGCTG- 3' Ift122 mmu-miR-509-5p beg:272 end:287 pic:3' TACTAACGGTGTAAGACCTCAT 5'& ||| ||||||| &5' ------GCCTG---CTGGAGT- 3' Ift122 mmu-miR-340-3p beg:190 end:201 pic:3' CGATATTTCATTGACTCTGCCT 5'& |||||||. &5' --------------GAGACGGG 3' Ift122 mmu-miR-207 beg:49 end:67 pic:3' CTCCCTCCTCTCGGTCCTCTTCG 5'& || |. ||||||| &5' -------GACTGTTGGGAGAAG- 3' Ift122 mcmv-miR-m01-1 beg:20 end:42 pic:3' GGCAAGCTGCAATA---AGAGGAGA 5'& ||.| ||||||. &5' -----CGGCTCCCATGGTCTCCTT- 3' Ift122 mcmv-miR-M23-2 beg:33 end:52 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& |. |||| |. |.||||| &5' CTCCTTG-CT---GTCCCCA- 3' Ift122 mmu-let-7a beg:321 end:339 pic:3' TTGATATGTTGGATGATGGAGT 5'& |||| |.|.||||| &5' -------CAACAGATTGCCTCA 3' Ift122 mmu-let-7b beg:319 end:339 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& . | |||| |.|.||||| &5' --TTGC-CAACAGATTGCCTCA 3' Ift122 mmu-let-7c beg:321 end:339 pic:3' TTGGTATGTTGGATGATGGAGT 5'& |||| |.|.||||| &5' -------CAACAGATTGCCTCA 3' Ift122 mmu-let-7f beg:321 end:339 pic:3' TTGATATGTTAGATGATGGAGT 5'& ||| |.|.||||| &5' -------CAACAGATTGCCTCA 3' Ift122 mmu-let-7g beg:318 end:339 pic:3' TTGACATGTTTGA-TGATGGAGT 5'& |.| ||| |.|.||||| &5' -----TGCCAACAGATTGCCTCA 3' Ift122 mmu-let-7i beg:319 end:339 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& || ||| |.|.||||| &5' ----GC-CAACAGATTGCCTCA 3' Ift122 mmu-miR-1 beg:154 end:173 pic:3' TATGTATGAAGAAATGTAAGGT 5'& ||.|| .||||.|| &5' -----TATTTATG-GCATTTCA 3' Ift122 mmu-miR-132 beg:39 end:59 pic:3' GCTGGTACCGACA----TCTGACAAT 5'& ||||| ||||||||. &5' --------GCTGTCCCCAGACTGTTG 3' Ift122 mmu-miR-139-3p beg:72 end:93 pic:3' GAGGTTGTCCCGGCGCAGAGGT 5'& || ||| | ||||||| &5' --CCCTCAGAA-CACGTCTCC- 3' Ift122 mmu-miR-150 beg:53 end:65 pic:3' GTGACCATGTTCCCAACCCTCT 5'& ||||||||| &5' -------------GTTGGGAGA 3' Ift122 mmu-miR-1894-5p beg:110 end:132 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& | ||| || .||||.|.| &5' -GTTGCAAA-GG-GGGGGGGGG 3' Ift122 mmu-miR-1903 beg:47 end:68 pic:3' ACAGAGTCCTTCT-TCTTCTTCC 5'& ||| .|.|||||| &5' -----CAGACTGTTGGGAGAAGG 3' Ift122 mmu-miR-1959 beg:78 end:93 pic:3' GAGGTGACTCGATGTAGGGG 5'& || | ||.||.|| &5' -------GAAC-ACGTCTCC 3' Ift122 mmu-miR-1961 beg:322 end:339 pic:3' AAGATTGA-TGATGGAGT 5'& ||| |.|.||||| &5' ----AACAGATTGCCTCA 3' Ift122 mmu-miR-196a beg:320 end:337 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& |||||| .|.|.||| &5' -CCAACA------GATTGCCT- 3' Ift122 mmu-miR-203 beg:151 end:174 pic:3' GATCACCAGGAT-----TTGTAAAGTG 5'& ||||| ..|||||||. &5' -------TCCTATTTATGGCATTTCAT 3' Ift122 mmu-miR-212 beg:39 end:59 pic:3' ACCGGCACTGACCTCTGACAAT 5'& ||.|| | ||||||||. &5' --GCTGTCCCC--AGACTGTTG 3' Ift122 mmu-miR-291b-3p beg:342 end:363 pic:3' TGTTTGTTTTACCTACG-TGAAA 5'& |||||.|||| || || ||| &5' ACAAATAAAA-GG--GCTACT-- 3' Ift122 mmu-miR-3072 beg:116 end:133 pic:3' TCTTCCGAAGGACCTCCCCCGT 5'& |||| ||.|||||| &5' --AAGGG-----GGGGGGGGC- 3' Ift122 mmu-miR-31star beg:253 end:275 pic:3' CTACCGT-TATACAACCGTATCGT 5'& ||| ||.|||| ||||||| &5' ---GGCTCATGTGTT--CATAGCA 3' Ift122 mmu-miR-325star beg:268 end:284 pic:3' TGTGAATGACTCGT-GGATGATCC 5'& |||| |||.||.| &5' ----------AGCAGCCTGCTGG- 3' Ift122 mmu-miR-328 beg:351 end:361 pic:3' TGCCTTCCCGTCTCTCCCGGTC 5'& |||||.| &5' --------------AGGGCTA- 3' Ift122 mmu-miR-338-3p beg:264 end:285 pic:3' GTTGTTTTAGTGACT----ACGACCT 5'& |||. | ||||||| &5' --------TCATAGCAGCCTGCTGGA 3' Ift122 mmu-miR-339-5p beg:182 end:203 pic:3' GCACTCGAGGACCTCCTGTCCCT 5'& ||| || ||| |||.|||| &5' ----AGCACCAGGA-GACGGGGA 3' Ift122 mmu-miR-381 beg:123 end:144 pic:3' TGTCTCTCGAACGGGAACATAT 5'& .|.|.|| || ||||||.|| &5' --GGGGGGC-TG-CCTTGTGTA 3' Ift122 mmu-miR-421 beg:42 end:61 pic:3' CGCGGGTTAATTACAGACAACTA 5'& |. ||||. ||||||. &5' GTCCCCAGA------CTGTTGG- 3' Ift122 mmu-miR-432 beg:208 end:229 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& ||| .||.|||| &5' -----CACACATATTTTCTAAGA 3' Ift122 mmu-miR-452 beg:165 end:186 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |.||| ||||| ||.|||.| &5' -TTTCA--TTCCT-TGTAAATA 3' Ift122 mmu-miR-542-3p beg:234 end:247 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& |||||||.|| &5' -----------AATCTGTTAC- 3' Ift122 mmu-miR-574-5p beg:205 end:222 pic:3' TGTGTGAGTGTGTGTGTGTGAGT 5'& |||||||||.|.|. &5' --------ACACACACATATTT- 3' Ift122 mmu-miR-676 beg:0 end:18 pic:3' TCGA-GTTGTTGGAG-TCCTGCC 5'& || |.|||.|||| .||| &5' -GCAGCGACAGCCTCTGGGA--- 3' Ift122 mmu-miR-676 beg:262 end:285 pic:3' TCGAGT--TGTTGGA-GTCCTGCC 5'& |.||| .||.||| | ||| &5' -GTTCATAGCAGCCTGCTGGA--- 3' Ift122 mmu-miR-761 beg:27 end:47 pic:3' ACACAGTCAAAGTGGGACGACG 5'& || || ||.|||||. &5' -----CATGGTCTCCTTGCTGT 3' Ift122 mmu-miR-764-3p beg:22 end:41 pic:3' TGTCAACGGTGATACCGGAGGA 5'& || | ||||.||||| &5' ------GCTCCCATGGTCTCCT 3' Ift122 mmu-miR-764-5p beg:248 end:271 pic:3' TCCTCCTG--TACACTCGTGG 5'& || |||.| ||||| ||. &5' AGAAGGGCTCATGTGTTCAT- 3' Ift122 mmu-miR-876-3p beg:294 end:309 pic:3' ACTTAATGAAACA-TTTGGTGAT 5'& || |.||||.|| &5' -----------GTCAGACCATTA 3' Ift122 mmu-miR-98 beg:321 end:339 pic:3' TTGTTATGTTGAATGATGGAGT 5'& |||| |.|.||||| &5' -------CAACAGATTGCCTCA 3' Ift122 mmu-miR-466h beg:301 end:319 pic:3' ATGTGTGTTCGTGTACGTGTGT 5'& || ||. | |.||||||| &5' -AC-CATTA-C-CGTGCACAC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ift122 RAID00080439 mmu-let-7b-5p miRNA MIMAT0000522 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00187399 mmu-miR-290a-5p miRNA MIMAT0000366 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00237786 mmu-miR-34b-5p miRNA MIMAT0000382 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00278815 mmu-miR-6905-5p miRNA MIMAT0027710 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00313143 mmu-miR-7116-3p miRNA MIMAT0028130 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00330693 mmu-miR-196b-5p miRNA MIMAT0001081 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00397839 mmu-miR-15a-5p miRNA MIMAT0000526 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00424437 mmu-miR-6951-3p miRNA MIMAT0027803 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00450995 mmu-miR-18a-5p miRNA MIMAT0000528 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00479224 mmu-miR-3473f miRNA MIMAT0031390 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00691702 mmu-miR-34a-5p miRNA MIMAT0000542 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00703021 mmu-miR-129-1-3p miRNA MIMAT0016994 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00766575 mmu-miR-7227-5p miRNA MIMAT0028422 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00857816 mmu-miR-203-3p miRNA MIMAT0000236 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00888863 mmu-miR-29b-3p miRNA MIMAT0000127 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00896755 mmu-miR-34c-5p miRNA MIMAT0000381 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID00941699 mmu-miR-150-5p miRNA MIMAT0000160 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01135517 mmu-miR-1a-3p miRNA MIMAT0000123 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01171054 mmu-miR-384-3p miRNA MIMAT0001076 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01267050 mmu-miR-325-3p miRNA MIMAT0004640 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01275986 mmu-miR-497a-5p miRNA MIMAT0003453 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01290164 mmu-miR-292a-5p miRNA MIMAT0000369 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01420920 mmu-miR-7659-5p miRNA MIMAT0029824 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01430710 mmu-miR-338-3p miRNA MIMAT0000582 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01521048 mmu-miR-18b-5p miRNA MIMAT0004858 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01565549 mmu-miR-382-5p miRNA MIMAT0000747 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01628659 mmu-miR-449c-5p miRNA MIMAT0003460 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01711462 mmu-miR-15b-5p miRNA MIMAT0000124 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01727192 mmu-miR-466l-3p miRNA MIMAT0005830 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID01863668 mmu-miR-129-2-3p miRNA MIMAT0000544 Ift122 mRNA 81896 Prediction 0.2202 Ift122 RAID01880241 mmu-miR-7678-5p miRNA MIMAT0029870 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID02122872 mmu-miR-503-5p miRNA MIMAT0003188 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID02158269 mmu-miR-219a-5p miRNA MIMAT0000664 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID02201567 mmu-let-7a-5p miRNA MIMAT0000521 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID02338376 mmu-let-7i-5p miRNA MIMAT0000122 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID02434847 mmu-miR-1231-5p miRNA MIMAT0022357 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID02438895 mmu-miR-539-5p miRNA MIMAT0003169 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID02462227 mmu-miR-488-3p miRNA MIMAT0003450 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID02584653 mmu-miR-140-5p miRNA MIMAT0000151 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID02590540 mmu-miR-206-3p miRNA MIMAT0000239 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID02829389 mmu-miR-218-5p miRNA MIMAT0000663 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID02877033 mmu-miR-761 miRNA MIMAT0003893 Ift122 mRNA 81896 CLIP-seq//Prediction 0.6308 Ift122 RAID02973062 mmu-miR-449a-5p miRNA MIMAT0001542 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03057913 mmu-miR-1298-3p miRNA MIMAT0014810 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03078275 mmu-miR-194-5p miRNA MIMAT0000224 Ift122 mRNA 81896 CLIP-seq//Prediction 0.6478 Ift122 RAID03101040 mmu-let-7f-5p miRNA MIMAT0000525 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03145463 mmu-let-7g-5p miRNA MIMAT0000121 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03433407 mmu-miR-210-3p miRNA MIMAT0000658 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03437765 mmu-mir-325 miRNA MI0000597 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03589346 mmu-miR-6974-5p miRNA MIMAT0027850 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03599498 mmu-miR-214-3p miRNA MIMAT0000661 Ift122 mRNA 81896 CLIP-seq//Prediction 0.6308 Ift122 RAID03646365 mmu-miR-182-5p miRNA MIMAT0000211 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03655829 mmu-miR-696 miRNA MIMAT0003483 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03736204 mmu-miR-29c-3p miRNA MIMAT0000536 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03756919 mmu-miR-130b-3p miRNA MIMAT0000387 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03793937 mmu-miR-142b miRNA MIMAT0031402 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03934847 mmu-miR-196a-5p miRNA MIMAT0000518 Ift122 mRNA 81896 Prediction 0.1828 Ift122 RAID03998122 mmu-miR-8097 miRNA MIMAT0031399 Ift122 mRNA 81896 Prediction 0.1828