DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Strn4; Zin ATTTA 15-2297 2952-2956

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000376 mmu-miR-298 97387 Strn4 ccCUUCUUGUCGGG--AGGAG-ACGg |:| |||:|| ||||| ||| uuGGACCUCAGUCCAUUCCUCUUGCu 2 22 394 419 [mm9:7:17425886-17425911:+] 0.4784 124 0 -24.30 -0.1966 MIMAT0000377 mmu-miR-299* 97387 Strn4 uacauacacccugccAUUUGGu |||||| aaaaaauugucucaaUAAACCc 2 8 755 776 [mm9:7:17426247-17426268:+] 0.5482 120 6 -4.53 -0.1133 MIMAT0004620 mmu-let-7a* 97387 Strn4 ccuuucuGUCAUCUA-ACAUAUc | ||| || |||||| uaguucuCUGUAUAUCUGUAUAa 2 16 546 568 [mm9:7:17426038-17426060:+] 0.5401 123 6 -5.56 -0.8275 MIMAT0005439 mmu-let-7c-2* 97387 Strn4 ccuuucuGUCAUCUA-ACAUAUc | ||| || |||||| uaguucuCUGUAUAUCUGUAUAa 2 16 546 568 [mm9:7:17426038-17426060:+] 0.5401 123 6 -5.56 -0.8275 MIMAT0004633 mmu-miR-27a* 97387 Strn4 acGAGUGUUCGUCGAUUCGGGa :|| :: || ||||||| ggUUCCUGUUCA--UAAGCCCc 2 21 708 727 [mm9:7:17426200-17426219:+] 0.5391 141 7 -17.13 -0.5422 MIMAT0000544 mmu-miR-129-3p 97387 Strn4 uacgAAAAACCCCA-UUCCCGAa || | | | ||||||| cucaUUCAUCAGAUGAAGGGCUg 2 19 320 342 [mm9:7:17425812-17425834:+] 0.5130 141 7 -10.84 -0.1454 MIMAT0004640 mmu-miR-325 97387 Strn4 aaCUAUCCUCCAC-GAGUUAUUu || | | || |||||||| guGAAAAAAAUUGUCUCAAUAAa 2 21 751 773 [mm9:7:17426243-17426265:+] 0.5482 151 7 -10.71 -0.7282 MIMAT0004704 mmu-miR-335-3p 97387 Strn4 ccaguccucguUAU-UACUUUUu :|| :|||||| ugccccaacuuGUAUGUGAAAAa 2 12 736 758 [mm9:7:17426228-17426250:+] 0.5437 126 6 -6.68 -0.1617 MIMAT0003127 mmu-miR-484 97387 Strn4 uagcccuccccuGA-CUCGGACu || ||||||| ucuuucaucuucCUGGAGCCUGg 2 11 104 126 [mm9:7:17425596-17425618:+] 0.5178 141 7 -15.26 -0.1254 MIMAT0004789 mmu-miR-450a-3p 97387 Strn4 uacuuacguuucguaGGGGUUa |||||| gccccuuccuuuuugCCCCAAc 2 8 723 744 [mm9:7:17426215-17426236:+] 0.5391 120 6 -10.57 -0.1109 MIMAT0003734 mmu-miR-667 97387 Strn4 gaacccgACCCACCGUCC-ACAGu |||| |||| |||| uccuaugUGGGCCCCAGGUUGUCc 2 17 368 391 [mm9:7:17425860-17425883:+] 0.4784 120 0 -17.39 -0.1023 MIMAT0003895 mmu-miR-764-3p 97387 Strn4 ugucaacgGUGAUACCGGAGGa |||| |||||||: uugcuccaCACUUUGGCCUCUa 2 15 634 655 [mm9:7:17426126-17426147:+] 0.5391 146 0 -20.31 -0.1461 MIMAT0003895 mmu-miR-764-3p 97387 Strn4 ugucaacggugaUACCGGAGGa | ||||||| gccuuccugggaAGGGCCUCCa 2 11 450 471 [mm9:7:17425942-17425963:+] 0.4812 142 7 -20.83 -0.1186 MIMAT0003457 mmu-miR-680 97387 Strn4 gggggUACAGUCGUCUACGGg ||| || ||||||| ccaagAUGAAAGAAGAUGCCa 2 17 273 293 [mm9:7:17425765-17425785:+] 0.5477 156 7 -18.35 -0.8740 MIMAT0003512 mmu-miR-450b-3p 97387 Strn4 uacGUACGUUUUAC-AAGGGUUa ||| | || ||||||| gucCAUUCCUCUUGCUUCCCAAc 2 20 404 426 [mm9:7:17425896-17425918:+] 0.4784 146 7 -10.74 -0.2165 MIMAT0003781 mmu-miR-676* 97387 Strn4 cguucAGGAUUCCAACAUCUCa |||| : | ||||||| ggcccUCCUUGAGAUGUAGAGa 2 18 499 520 [mm9:7:17425991-17426012:+] 0.5121 157 7 -17.15 -0.4063 MIMAT0004844 mmu-miR-880 97387 Strn4 agaugagucucuccuACCUCAu |||||| ucucaauaaacccuuUGGAGUa 2 8 764 785 [mm9:7:17426256-17426277:+] 0.5482 120 6 -13.15 -0.2529 MIMAT0004890 mmu-miR-509-5p 97387 Strn4 uacuaacggUGUAAGACCUCAu || |:|||||| ucucaauaaACCCUUUGGAGUa 2 14 764 785 [mm9:7:17426256-17426277:+] 0.5482 133 6 -14.39 -0.2551 MIMAT0005830 mmu-miR-466l 97387 Strn4 uuauACACACGUACAUAAAUAu | || || | ||||||| acacUUUG-GCCUCUAUUUAUu 2 19 641 661 [mm9:7:17426133-17426153:+] 0.5391 152 7 -4.66 -0.4356 MIMAT0005839 mmu-miR-669f 97387 Strn4 uaugcacaCACACAUACAUAUAc || | | ||||||| ugccccuaGU-UCUCUGUAUAUc 2 16 540 561 [mm9:7:17426032-17426053:+] 0.5401 145 7 -4.41 -0.1936 MIMAT0005858 mmu-miR-1197 97387 Strn4 ucuucaUCUGGUACACAGGAu ||:|:: ||||||| cagcccAGGCUGGGUGUCCUu 2 16 236 256 [mm9:7:17425728-17425748:+] 0.5328 155 7 -19.37 -0.1575 MIMAT0007868 mmu-miR-1903 97387 Strn4 acAGAGUCCUUCUUC-UUCUUCc |:| | |||| | |||||| auUUUGACCAAGAUGAAAGAAGa 2 21 266 288 [mm9:7:17425758-17425780:+] 0.5477 128 6 -9.07 -0.3210 MIMAT0007872 mmu-miR-1906 97387 Strn4 ucGGGACGGAGUCCGA-CGACGu ||: |||||: || ||||| caCCUGGCCUCGCCCUGGCUGCa 2 21 4 26 [mm9:7:17425263-17425285:+] 0.6156 132 0 -28.23 -0.3375 MIMAT0007873 mmu-miR-1896 97387 Strn4 gaGGAGUGGGU-GGUAGUCU-CUc |||| |:|| :||||||| || acCCUCCCUCAUUCAUCAGAUGAa 2 21 313 336 [mm9:7:17425805-17425828:+] 0.5130 139 0 -24.37 -0.1602 MIMAT0007878 mmu-miR-1894-3p 97387 Strn4 gagGGAAGUGGGAGAGG-GAACg ||| ::|| :||| |||| ggaCCUCAGUCCAUUCCUCUUGc 2 20 396 418 [mm9:7:17425888-17425910:+] 0.4784 123 0 -23.23 -0.3760 MIMAT0009392 mmu-miR-1929 97387 Strn4 gagacgagauauuucAGGAUCUu ||||||| agaugccaggcucccUCCUAGAg 2 9 286 308 [mm9:7:17425778-17425800:+] 0.5477 140 7 -15.21 -0.1010 MIMAT0009402 mmu-miR-1938 97387 Strn4 cuggcuugAUGUUCAGGGUGGc | :::|||||||| acucuuuaUUUGGGUCCCACCu 2 15 664 685 [mm9:7:17426156-17426177:+] 0.5391 150 7 -18.76 -0.3247 MIMAT0009402 mmu-miR-1938 97387 Strn4 cuggcuugauguucAGGGUGGc ||||||| --------------UCCCACCu 2 9 1 8 [mm9:7:17425260-17425267:+] 0.6988 140 7 -11.58 -0.3848 MIMAT0009408 mmu-miR-1943 97387 Strn4 agGUC-CACGGGUCUAGGAGGGAa :|| ||||| | ||||||| ccUAGAGUGCC---ACCCUCCCUc 2 22 302 322 [mm9:7:17425794-17425814:+] 0.5477 152 7 -27.72 -0.1812 MIMAT0009412 mmu-miR-1946a 97387 Strn4 uuuucACACACGGUGGUGACGGG-CCGa || || ::: ||| |||| ||| cguccUGAGU-UUGACACAGCCCAGGCu 2 23 220 246 [mm9:7:17425712-17425738:+] 0.5178 124 0 -21.20 -0.1087 MIMAT0009423 mmu-miR-1952 97387 Strn4 guCUUCCUCCCACCUCu ||: |||||||||| uaGAGAGAGGGUGGAGu 2 16 515 531 [mm9:7:17426007-17426023:+] 0.5401 163 7 -28.12 -0.1007 MIMAT0009439 mmu-miR-1966 97387 Strn4 cugagagaggaCU-CGGU-CGAGGGAa || |||| ||||||| agaugaaagaaGAUGCCAGGCUCCCUc 2 15 276 302 [mm9:7:17425768-17425794:+] 0.5477 152 7 -22.04 -0.1670 MIMAT0014852 mmu-miR-3072* 97387 Strn4 ggacGGGAGGGAGCCCCAGGGa |:||:: |: ||||||| uucaCUCUUUAUUUGGGUCCCa 2 19 661 682 [mm9:7:17426153-17426174:+] 0.5391 158 7 -22.20 -1.0942 MIMAT0000125 mmu-miR-23b 97387 Strn4 ccauuagggaccguUACACUa |||||| uugccccaacuuguAUGUGAa 2 8 735 755 [mm9:7:17426227-17426247:+] 0.5437 120 6 -10.38 -0.1038 MIMAT0000127 mmu-miR-29b 97387 Strn4 uuguGACUAAAGUUUACCACGAu |||: | ::||||||| cuucCUGGAGCCUGGUGGUGCUa 2 20 112 134 [mm9:7:17425604-17425626:+] 0.5178 151 7 -19.72 -0.1161 MIMAT0000140 mmu-miR-128 97387 Strn4 uuucucugGCCA-AGUGACACu || | |||||||| ccaccccaCGUUAUCACUGUGu 2 14 591 612 [mm9:7:17426083-17426104:+] 0.5257 148 7 -15.49 -0.5276 MIMAT0000158 mmu-miR-146a 97387 Strn4 uuGGGUACCUUAAGUCAAGAGu ||::|| | ||||||| gcCCUGUGCCCCU-AGUUCUCu 2 21 534 554 [mm9:7:17426026-17426046:+] 0.5401 146 7 -18.15 -0.4299 MIMAT0000211 mmu-miR-182 97387 Strn4 gccACACUCAAGAUGGUAAC-GGUUu | ||:| |||: : ||| |||| uccUUUGGGAUCUGAUUUUGACCAAg 2 23 252 277 [mm9:7:17425744-17425769:+] 0.5477 130 0 -15.79 -0.7990 MIMAT0000221 mmu-miR-191 97387 Strn4 gucgacGAAAACCCUAAGG-CAAc | ||| |:|||| ||| gguuccCCUUUCAGGUUCCUGUUc 2 18 695 718 [mm9:7:17426187-17426210:+] 0.5391 121 0 -11.04 -0.4758 MIMAT0000247 mmu-miR-143 97387 Strn4 cuCGAUGUCACGAAGU-AGAGu |: |:||| : ||| |||| guGUGAUAGUCUGUCAGUCUCc 2 20 609 630 [mm9:7:17426101-17426122:+] 0.5391 123 0 -11.24 -0.4417 MIMAT0000532 mmu-miR-23a 97387 Strn4 ccuuuagggaccguUACACUa |||||| uugccccaacuuguAUGUGAa 2 8 735 755 [mm9:7:17426227-17426247:+] 0.5437 120 6 -10.38 -0.1038 MIMAT0000535 mmu-miR-29a 97387 Strn4 auuGGCUAAAGUCUACCACGAu |:|: | |:||||||| uucCUGGAGCCUGGUGGUGCUa 2 20 113 134 [mm9:7:17425605-17425626:+] 0.5178 151 7 -21.53 -0.1161 MIMAT0000536 mmu-miR-29c 97387 Strn4 auuGGCUAAAGUUUACCACGAu |:|: | ::||||||| uucCUGGAGCCUGGUGGUGCUa 2 20 113 134 [mm9:7:17425605-17425626:+] 0.5178 147 7 -18.79 -0.1161 MIMAT0000653 mmu-miR-28 97387 Strn4 gaGUUAUCUGACACUC-GAGGAa ::|||| |||| || ||||| ugUGAUAGUCUGUCAGUCUCCUc 2 21 610 632 [mm9:7:17426102-17426124:+] 0.5391 140 0 -18.46 -0.4761 MIMAT0000704 mmu-miR-361 97387 Strn4 cauGGGGACCUCUAAGAC-UAUu :|:||| | | |||| ||| aguUCUCUGUAUA-UCUGUAUAa 2 20 547 568 [mm9:7:17426039-17426060:+] 0.5401 121 0 -13.25 -0.7925 MIMAT0000741 mmu-miR-377 97387 Strn4 uguuUUCAACGGAAACACACUa | ||| :| ||||||| ccccACGUUAUCACUGUGUGAu 2 19 594 615 [mm9:7:17426086-17426107:+] 0.5257 154 7 -13.63 -0.2669 MIMAT0000746 mmu-miR-381 97387 Strn4 ugucucucGAACGG----GAACAUAu :||||| ||||||| ccuuccuuUUUGCCCCAACUUGUAUg 2 15 726 751 [mm9:7:17426218-17426243:+] 0.5437 145 7 -15.26 -0.7023 MIMAT0003893 mmu-miR-761 97387 Strn4 acacaGUCAAAGUGGGA-CGACg ::| ||:|||| |||| ccaccUGGCCUCGCCCUGGCUGc 2 18 3 25 [mm9:7:17425262-17425284:+] 0.6156 121 0 -21.19 -0.2918 MIMAT0003450 mmu-miR-488 97387 Strn4 cugguucuuugucGGAAAGUu ||||||| ugcccucgguuccCCUUUCAg 2 9 688 708 [mm9:7:17426180-17426200:+] 0.5391 140 7 -14.16 -0.1230 MIMAT0003475 mmu-miR-146b 97387 Strn4 ucGGAUACCUUAAGUCAAGAGu |||:|| | ||||||| gcCCUGUGCCCCU-AGUUCUCu 2 21 534 554 [mm9:7:17426026-17426046:+] 0.5401 150 7 -19.09 -0.4299 MIMAT0004828 mmu-miR-708 97387 Strn4 ggguCGAUCUAACAUUC-GAGGAa | ||| ||| || ||||| guguGAUAGUCUGUCAGUCUCCUc 2 20 609 632 [mm9:7:17426101-17426124:+] 0.5391 127 0 -14.11 -0.4828 MIMAT0004869 mmu-miR-421 97387 Strn4 cgcGGGUUAAUUACAGACA-ACUa |||| | || |||| ||| cacCCCACGUUAUCACUGUGUGAu 2 21 592 615 [mm9:7:17426084-17426107:+] 0.5257 124 0 -15.62 -0.2361 MIMAT0004936 mmu-miR-873 97387 Strn4 uccucuGAGUGUUCAAGGACg ||: ||:||||||| guucccCUUUCAGGUUCCUGu 2 16 696 716 [mm9:7:17426188-17426208:+] 0.5391 159 7 -18.97 -0.3401

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G056071 Strn4 Mus musculus 97387 19536157 0 0 R53510; MOUSE$STRN4_02; Binding factors: mmu-let-7a-5p , mmu-let-7b-5p , mmu-let-7c-5p , mmu-let-7e-5p , mmu-let-7f-5p , mmu-let-7g-5p , mmu-let-7i-5p , mmu-miR-672-5p , mmu-miR-98-5p // 0 0 R53515; MOUSE$STRN4_03; Binding factors: mmu-let-7a-5p , mmu-let-7b-5p , mmu-let-7c-5p , mmu-let-7e-5p , mmu-let-7f-5p , mmu-let-7g-5p , mmu-let-7i-5p , mmu-miR-672-5p , mmu-miR-98-5p // 0 0 R53518; MOUSE$STRN4_04; Binding factors: mmu-miR-138-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Strn4 mmu-miR-129-3p beg:332 end:342 pic:3' TACGAAAAACCCCATTCCCGAA 5'& ||||||| &5' --------------AAGGGCT- 3' Strn4 mmu-miR-680 beg:275 end:293 pic:3' GGGGGTACAGTCGTCTACGGG 5'& ||| || ||||||| &5' -----ATGAAAGAAGATGCC- 3' Strn4 mmu-miR-15astar beg:159 end:174 pic:3' ACTCCGTCGTGTCATACCGGAC 5'& || .| ||||||| &5' --------CAAGG-ATGGCCT- 3' Strn4 mmu-miR-362-5p beg:151 end:169 pic:3' TAAGTGTGGATCCAAGGTTCCTAA 5'& |||| ||| ||||||| &5' --TCACCCCT------CAAGGAT- 3' Strn4 mmu-miR-128 beg:596 end:612 pic:3' TTTCTCTGGCCA-AGTGACACT 5'& || |||||||| &5' --------CGTTATCACTGTG- 3' Strn4 mmu-miR-1962 beg:63 end:78 pic:3' TACACAGGGTCACGGTCGGAGA 5'& | ||| |||||||| &5' ----G-CCC----CCAGCCTC- 3' Strn4 mmu-miR-485 beg:63 end:78 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& .| |||||||| &5' ---------GCCCCCAGCCTC- 3' Strn4 mmu-miR-327 beg:151 end:166 pic:3' TAGGAGTACGGGGAGTTCA 5'& ||| ||||||||| &5' ----TCA--CCCCTCAAG- 3' Strn4 mmu-miR-1943 beg:305 end:321 pic:3' AGGTCCACGGGTCTAGGAGGGAA 5'& ||||| ||||||| &5' -----GTGCCAC---CCTCCCT- 3' Strn4 mmu-miR-484 beg:116 end:127 pic:3' TAGCCCTCCCCTGACTCGGACT 5'& |||||||. &5' --------------GAGCCTGG 3' Strn4 mmu-miR-365 beg:476 end:488 pic:3' TATTCCTAAAAATCCCCGTAAT 5'& ||||||||. &5' -------------GGGGCATTG 3' Strn4 mghv-miR-M1-2 beg:344 end:358 pic:3' TTTCTCCCCCTCTCCCCCAGAC 5'& |||| ||||||| &5' ---------GAGA-GGGGTCT- 3' Strn4 mmu-miR-1952 beg:512 end:531 pic:3' GTCTTCCTCCCACCTCT 5'& .|||. |||||||||| &5' TAGAGAGAGGGTGGAG- 3' Strn4 mmu-miR-1197 beg:239 end:256 pic:3' TCTTCATCTGGTACACAGGAT 5'& ||.|. ||||||| &5' ------AGGCTGGGTGTCCT- 3' Strn4 mmu-miR-873 beg:699 end:717 pic:3' TCCTCTGAGTGTTCAAGGACG 5'& ||. ||.|||||||. &5' ------CTTTCAGGTTCCTGT 3' Strn4 mcmv-miR-M23-2 beg:53 end:73 pic:3' GGCGAACTGGCTC---CGGGGGTA 5'& |.|.||| ||||||| &5' ------GGCTGAGGCAGCCCCCA- 3' Strn4 mghv-miR-M1-2 beg:515 end:540 pic:3' TTTCTCCC-CCTCTCCCCCAGAC 5'& |.|||||| |||| ||| ||| &5' AGAGAGGGTGGAGTGGGCC-CTG 3' Strn4 mghv-miR-M1-3 beg:60 end:83 pic:3' TTCGCGTTGAGGA-C-GAGTGGAG 5'& |||.| || | |||||||. &5' ----GCAGCCCCCAGCCTCACCTT 3' Strn4 mghv-miR-M1-8 beg:229 end:253 pic:3' CTGGTTTGGGGGTC-ACTCACGA 5'& ||| |.||| .| ||.|||. &5' GACACAGCCCA-GGCTGGGTGT- 3' Strn4 mmu-let-7gstar beg:334 end:348 pic:3' CGTTCCGTCACCGGACATGTCA 5'& || ||||.||| &5' ----------GGGCTGTGCAG- 3' Strn4 mmu-miR-101astar beg:596 end:622 pic:3' CGTAGTCGTG--ACACTATT-GACT 5'& |.|.| ||| |||||||. ||| &5' -CGTTATCACTGTGTGATAGTCTG- 3' Strn4 mmu-miR-1197 beg:475 end:493 pic:3' TCTTCATCTGGTACACAGGAT 5'& |.|. ||| ||||||| &5' -----TGGGGCAT-TGTCCTA 3' Strn4 mmu-miR-122 beg:627 end:648 pic:3' GTTTGTGGTAACA--GTGTGAGGT 5'& | || ||| ||||||.. &5' ----CTCC-TTGCTCCACACTTT- 3' Strn4 mmu-miR-1224 beg:308 end:331 pic:3' GAGGT-GGAGGG-GTCAGGAGTG 5'& ||| |||||| || || ||| &5' --CCACCCTCCCTCATTCATCA- 3' Strn4 mmu-miR-145 beg:445 end:467 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& ||| |||||||||| ||.| &5' AGGCCTTCCTGGGAA----GGGC 3' Strn4 mmu-miR-145star beg:132 end:153 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||| | ||||||.| &5' -AAGGCCCTTTCC-CCAGGAGT 3' Strn4 mmu-miR-146a beg:533 end:554 pic:3' TTGGG-TACCTTAAGTCAAGAGT 5'& .||| .|| .||||||| &5' -GCCCTGTGCCCC-TAGTTCTC- 3' Strn4 mmu-miR-146b beg:533 end:554 pic:3' TC-GGATACCTTAAGTCAAGAGT 5'& | |||.|| .||||||| &5' -GCCCTGTGCCCC-TAGTTCTC- 3' Strn4 mmu-miR-146bstar beg:462 end:484 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& .|| ||| |.||.|||| &5' GCCTCCACTC---CTCTGGGGC 3' Strn4 mmu-miR-149 beg:32 end:50 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& ||||| |||.|||||. &5' GGGAG--------CGGGGCCAGG 3' Strn4 mmu-miR-154 beg:162 end:174 pic:3' GCTTCCGTTGTGCCTATTGGAT 5'& ||||..||| &5' ------------GGATGGCCT- 3' Strn4 mmu-miR-1897-5p beg:406 end:426 pic:3' GGGGGAGAAAGAGGTAGGTTTC 5'& ..|||||| ||.| |||| &5' -TTCCTCTTGCTTC--CCAA-- 3' Strn4 mmu-miR-1897-5p beg:721 end:744 pic:3' GGGGGA-GAAAGA-GGTAGGTTTC 5'& ||||.| ||||.| || |||| &5' CCCCTTCCTTTTTGCC--CCAA-- 3' Strn4 mmu-miR-18a beg:655 end:688 pic:3' GATAGACGTGA--------TCTAC-GTGGAAT 5'& |||.| |||| .|.| ||||||| &5' -TATTT-CACTCTTTATTTGGGTCCCACCTTA 3' Strn4 mmu-miR-1904 beg:71 end:96 pic:3' GGAG-GGAGGTCTCCTCGTCTTG 5'& |||| |||.|||||| | ||. &5' CCTCACCTTCAGAGGCTCTGAG- 3' Strn4 mmu-miR-1929 beg:292 end:309 pic:3' GAGACGAGATATTTCAGGATCTT 5'& |||| |||||||. &5' ----GCTCCC-----TCCTAGAG 3' Strn4 mmu-miR-1929 beg:98 end:121 pic:3' GAGAC-GAGATATTTC-AGGATCTT 5'& | |||| ||||.||. &5' ----GCCTCTTTCATCTTCCTGGAG 3' Strn4 mmu-miR-193star beg:126 end:142 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& |. | .||||.||| &5' -------GTGC-TAAAGGCCC- 3' Strn4 mmu-miR-1950 beg:496 end:519 pic:3' ACTGGTATAGGAA-TCTACGTCT 5'& |.|| ||||| |||||.||| &5' -GGCCC--TCCTTGAGATGTAGA 3' Strn4 mmu-miR-1953 beg:128 end:148 pic:3' GTCTTCGGAC-TCTTGAAAGGGT 5'& ||. .| ||||||| &5' -----GCTAAAGGCCCTTTCCC- 3' Strn4 mmu-miR-1957 beg:598 end:610 pic:3' CAGTATACGAGATGGTGAC 5'& .||.||||| &5' ----------TTATCACTG 3' Strn4 mmu-miR-1971 beg:397 end:419 pic:3' AGAGTCGGGTC-GGA-AATG 5'& |||||.||| ||| ||.| &5' -CTCAGTCCATTCCTCTTGC 3' Strn4 mmu-miR-1982star beg:140 end:160 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& .||||||||| .| ||| &5' -TTCCCCAGGAGTCACCC-- 3' Strn4 mmu-miR-1982star beg:406 end:426 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& .|||.| |.|||||| &5' -TTCCTCTTG--CTTCCCAA 3' Strn4 mmu-miR-200cstar beg:443 end:467 pic:3' GGTTTGTGAC-GACCCATTCTGC 5'& |||..| || ||||| |.|.| &5' CCAGGC-CTTCCTGGGAAGGGC- 3' Strn4 mmu-miR-203 beg:644 end:666 pic:3' GATCACCAG-GATTTGTAAAGTG 5'& ||| | ||| .||||||| &5' ----TGGCCTCTATTTATTTCAC 3' Strn4 mmu-miR-2134 beg:135 end:153 pic:3' CGTGGGGCAAAGGGTTCTG 5'& .|||. || ||||.|| &5' --GCCCT-TTCCCCAGGA- 3' Strn4 mmu-miR-2135 beg:385 end:403 pic:3' CAAAGCCGGGGT--TCTGGAGA 5'& |.||. .|||||| &5' ------GTCCTTTTGGACCTC- 3' Strn4 mmu-miR-2138 beg:485 end:509 pic:3' TAAGG--CGGT--TCGGGCAAGGGAA 5'& ||| |||| .|||| |||.| &5' --TCCTAGCCACAGGCCC--TCCTT- 3' Strn4 mmu-miR-2138 beg:531 end:555 pic:3' TAAGGCGGTT--CGGG---CAAGGGAA 5'& ||| |||| ||||.|| &5' -----GCCCTGTGCCCCTAGTTCTCT- 3' Strn4 mmu-miR-23a beg:741 end:755 pic:3' CCTTTAGGGACCGTTACACTA 5'& |.|| |||||| &5' -------CTTGT--ATGTGA- 3' Strn4 mmu-miR-2861 beg:284 end:300 pic:3' GGCGGGCGGCGGTCCGGGG 5'& | .|||||||.|| &5' ------GATGCCAGGCTCC 3' Strn4 mmu-miR-2861 beg:483 end:504 pic:3' GGCGGG--CGGCGGTCCGGGG 5'& .|.|| ||| |||||||. &5' -TGTCCTAGCCA-CAGGCCCT 3' Strn4 mmu-miR-29b beg:113 end:135 pic:3' TTGTGACTAAAGTTTACCACGAT 5'& |||. ..|||||||| &5' ----CTGGAGCCTGGTGGTGCTA 3' Strn4 mmu-miR-3099star beg:518 end:540 pic:3' GTTCCCGACCTT-CCTTCGACC 5'& .|||| ||||. ||. ||| &5' -GAGGG-TGGAGTGGGCCCTG- 3' Strn4 mmu-miR-31 beg:399 end:421 pic:3' GTCGATACGGTC-GTAGAACGGA 5'& |||. ||| | ||||||.| &5' CAGT----CCATTCCTCTTGCTT 3' Strn4 mmu-miR-324-3p beg:35 end:56 pic:3' TCGTCGTGGACCCCGTCACC 5'& |||.| .|| |||||||| &5' AGCGGGGCCA--GGCAGTGG 3' Strn4 mmu-miR-327 beg:407 end:426 pic:3' TAGGAGTACGGGGAGTTCA 5'& ||||| |||..| ||| &5' -TCCTCTTGCTTCCCAA-- 3' Strn4 mmu-miR-328 beg:433 end:450 pic:3' TGCCTTCCCGTCTCTCCCGGTC 5'& || .||||||| &5' --------GCCTCTGGGGCCAG 3' Strn4 mmu-miR-3470b beg:288 end:311 pic:3' GGTCGGACCAGATGTCTCACT 5'& |||| || .|||||| &5' CCAGGCTCCCTCCTAGAGTG- 3' Strn4 mmu-miR-450a-3p beg:132 end:151 pic:3' TACTTACGTTTCGT---AGGGGTTA 5'& ||.|| ||||||. &5' --------AAGGCCCTTTCCCCAG- 3' Strn4 mmu-miR-450a-3p beg:186 end:204 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& |||| || |||||| &5' ----ATGCCC--CAACCCCAA- 3' Strn4 mmu-miR-450b-3p beg:413 end:426 pic:3' TACGTACGTTTTACAAGGGTTA 5'& ||| ||||||| &5' -----TGC------TTCCCAA- 3' Strn4 mmu-miR-463 beg:605 end:625 pic:3' GATGGAATATACCA-CAGATAGT 5'& |.|.|| ||||.||| &5' ------TGTGTGATAGTCTGTCA 3' Strn4 mmu-miR-470 beg:140 end:168 pic:3' TGAGTGGTCA-CGGTCA--GGTTCTT 5'& .|| |||| |.|| .||||.| &5' -TTCCCCAGGAGTCACCCCTCAAGGA 3' Strn4 mmu-miR-488 beg:688 end:708 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& || |. | |||||||. &5' --CCTCGGTTCC-CCTTTCAG 3' Strn4 mmu-miR-490 beg:368 end:389 pic:3' GTCGTAC-CTCAGGAGGTCCAAC 5'& .||| |.| || |||||||| &5' ---TATGTGGG-CC-CCAGGTTG 3' Strn4 mmu-miR-490 beg:692 end:712 pic:3' GTCGTACCTCA--GGAGGTCCAAC 5'& || |.|.|||||| &5' ------GGTTCCCCTTTCAGGTT- 3' Strn4 mmu-miR-493 beg:63 end:85 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& || | ||| ||||||| &5' ----GCCCCCAGCCTCACCTTCA 3' Strn4 mmu-miR-509-5p beg:163 end:181 pic:3' TACTAACGGTGTAAGACCTCAT 5'& ||| ||| |||||.|| &5' --GATGGCC----TCTGGGGT- 3' Strn4 mmu-miR-509-5p beg:770 end:785 pic:3' TACTAACGGTGTAAGACCTCAT 5'& || |.||||||| &5' ---------ACCCTTTGGAGTA 3' Strn4 mmu-miR-547 beg:151 end:173 pic:3' GAGTG---AGTTTCTACATGGTTC 5'& |||| ||||.|||| .|| &5' -TCACCCCTCAAGGATG-GCC--- 3' Strn4 mmu-miR-592 beg:217 end:238 pic:3' TGTAGTAGCGTAT--AACTGTGTTA 5'& .||.|| | ||||||||. &5' --GTCGTC-CTGAGTTTGACACAG- 3' Strn4 mmu-miR-665 beg:347 end:363 pic:3' TCCCTGGAGTCGGAGGACCA 5'& |||| |.||||||| &5' AGGG------GTCTCCTGG- 3' Strn4 mmu-miR-665 beg:97 end:120 pic:3' TCCCTGGAGTC----GGAGGACCA 5'& |.|||| |.|||||| &5' ---GGCCTCTTTCATCTTCCTGG- 3' Strn4 mmu-miR-670 beg:18 end:39 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& | .| || ||||||| &5' -TGGCTGCACAGTGTCAGGGA- 3' Strn4 mmu-miR-672 beg:58 end:79 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& | .||| | |||.||||| &5' ----AGGCAGCCC-CCAGCCTCA 3' Strn4 mmu-miR-674star beg:327 end:345 pic:3' AACAAGACTCTACC-CTCGACAC 5'& ||||| |.|||||| &5' --------AGATGAAGGGCTGTG 3' Strn4 mmu-miR-676star beg:503 end:520 pic:3' CGTTCAGGATTCCAACATCTCA 5'& |.|.|| ||||||| &5' ------CTTGAGA-TGTAGAG- 3' Strn4 mmu-miR-680 beg:315 end:335 pic:3' GGGGGTACAGTCGTCTACGGG 5'& |||.||| ||| |||||| &5' CCCTCAT-TCATCAGATG--- 3' Strn4 mmu-miR-681 beg:35 end:61 pic:3' TCGA--CGGACGGTCGCTCCGAC 5'& ||| ||| | |||.|.||||| &5' AGCGGGGCCAGGCAGTGGGGCTG 3' Strn4 mmu-miR-705 beg:587 end:609 pic:3' ACGGGTGGGGTGGAG-GGTGG 5'& |||||||||| |. .|||. &5' --CCCACCCCACGTTATCACT 3' Strn4 mmu-miR-705 beg:187 end:209 pic:3' ACGGG--TGGGGTGGAGGGTGG 5'& ||||| |||||| ||||. &5' TGCCCCAACCCCAACTCCT--- 3' Strn4 mmu-miR-705 beg:63 end:84 pic:3' ACGGG---TGGGGTGGAGGGTGG 5'& |||| .||.|||||.| &5' -GCCCCCAGCCTCACCTTC---- 3' Strn4 mmu-miR-741 beg:87 end:111 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& |||. |||| |||.||| &5' TCTGAGTCT--TGGCCTCTTTCA 3' Strn4 mmu-miR-762 beg:59 end:78 pic:3' CGAGACAGGGCCG----GGGTCGGGG 5'& ||| |||||||.| &5' ----------GGCAGCCCCCAGCCTC 3' Strn4 mmu-miR-764-3p beg:632 end:655 pic:3' TGTCAACG----GTGATACCGGAGGA 5'& |||| |||| |||||||. &5' ----TTGCTCCACACTTTGGCCTCT- 3' Strn4 mmu-miR-764-3p beg:92 end:108 pic:3' TGTCAACGGTGATACCGGAGGA 5'& |.| |||||||.| &5' ------GTCT---TGGCCTCTT 3' Strn4 mmu-miR-770-5p beg:112 end:134 pic:3' GCACCGGGTCTGTG--CACCACGA 5'& || || | |||||||| &5' -----CCTGGAGCCTGGTGGTGCT 3' Strn4 mmu-miR-877 beg:460 end:480 pic:3' GGGACGCGGTA--GAGGAGATG 5'& | ||| |||||||. &5' ----GGGCCTCCACTCCTCTG- 3' Strn4 mmu-miR-880 beg:515 end:532 pic:3' AGATGAGTCTCTCCTACCTCAT 5'& |||||||.||||||. &5' -------AGAGAGGGTGGAGTG 3' Strn4 mmu-miR-1938 beg:0 end:8 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& ||||||| &5' --------------TCCCACC- 3' Strn4 mmu-miR-1938 beg:672 end:685 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& ..|||||||| &5' -----------GGGTCCCACC- 3' Strn4 mcmv-miR-m01-1 beg:618 end:633 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& || ||||||| &5' ---------GTCAGTCTCCTC- 3' Strn4 mmu-miR-599 beg:222 end:238 pic:3' CAAACTATTTGACTGTGTT 5'& ||| .|||||||. &5' ---TGAGT--TTGACACAG 3' Strn4 mmu-miR-377 beg:597 end:616 pic:3' TGTTTTCAACGGAAACACACTA 5'& ||| | |||||||| &5' ------GTTATCACTGTGTGAT 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Strn4 RAID00237844 mmu-miR-3094-5p miRNA MIMAT0014909 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00292144 mmu-miR-3572-5p miRNA MIMAT0022986 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00423828 mmu-miR-146a-5p miRNA MIMAT0000158 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00539482 mmu-miR-7663-3p miRNA MIMAT0029833 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00584444 mmu-miR-7066-5p miRNA MIMAT0028036 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00613872 mmu-miR-7655-5p miRNA MIMAT0029816 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00614526 mmu-miR-3113-3p miRNA MIMAT0014960 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00714354 mmu-miR-29b-3p miRNA MIMAT0000127 Strn4 mRNA 97387 Prediction 0.2381 Strn4 RAID00774035 mmu-miR-7117-5p miRNA MIMAT0028131 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00784998 mmu-miR-6986-3p miRNA MIMAT0027875 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00967574 mmu-miR-6951-3p miRNA MIMAT0027803 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00969849 mmu-miR-28a-5p miRNA MIMAT0000653 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00972201 mmu-miR-672-3p miRNA MIMAT0017241 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00978402 mmu-miR-7227-5p miRNA MIMAT0028422 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID00992316 mmu-miR-485-5p miRNA MIMAT0003128 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01022437 mmu-miR-381-3p miRNA MIMAT0000746 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01169429 mmu-let-7f-2-3p miRNA MIMAT0017017 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01193829 mmu-miR-27a-5p miRNA MIMAT0004633 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01235595 mmu-miR-6904-5p miRNA MIMAT0027708 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01248779 mmu-miR-7005-5p miRNA MIMAT0027914 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01263593 mmu-miR-7051-5p miRNA MIMAT0028006 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01314483 mmu-miR-29c-3p miRNA MIMAT0000536 Strn4 mRNA 97387 Prediction 0.2455 Strn4 RAID01386010 mmu-miR-3092-5p miRNA MIMAT0014905 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01448104 mmu-miR-143-3p miRNA MIMAT0000247 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01449920 mmu-miR-3072-5p miRNA MIMAT0014852 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01478536 mmu-miR-421-3p miRNA MIMAT0004869 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01619112 mmu-miR-7116-3p miRNA MIMAT0028130 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01670521 mmu-miR-23b-3p miRNA MIMAT0000125 Strn4 mRNA 97387 Prediction 0.2202 Strn4 RAID01686009 mmu-miR-5120 miRNA MIMAT0020628 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01695971 mmu-miR-770-5p miRNA MIMAT0004822 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01754237 mmu-miR-7653-5p miRNA MIMAT0029812 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01758946 mmu-miR-7064-5p miRNA MIMAT0028032 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01763674 mmu-miR-8108 miRNA MIMAT0031413 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01765727 mmu-miR-191-5p miRNA MIMAT0000221 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01905069 mmu-miR-7220-3p miRNA MIMAT0028409 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID01907448 mmu-miR-669f-3p miRNA MIMAT0005839 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02034564 mmu-miR-1938 miRNA MIMAT0009402 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02064097 mmu-miR-361-5p miRNA MIMAT0000704 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02157122 mmu-miR-7681-3p miRNA MIMAT0029883 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02182138 mmu-miR-466m-3p miRNA MIMAT0014883 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02204568 mmu-miR-6370 miRNA MIMAT0025114 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02208458 mmu-miR-488-3p miRNA MIMAT0003450 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02267417 mmu-miR-9768-5p miRNA MIMAT0036459 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02539737 mmu-miR-7115-3p miRNA MIMAT0028128 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02588770 mmu-miR-6975-5p miRNA MIMAT0027852 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02664461 mmu-miR-15a-3p miRNA MIMAT0004624 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02672030 mmu-miR-325-3p miRNA MIMAT0004640 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02764908 mmu-miR-669b-3p miRNA MIMAT0017250 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02819603 mmu-miR-23a-3p miRNA MIMAT0000532 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID02869237 mmu-miR-874-5p miRNA MIMAT0017268 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID03092294 mmu-miR-467a-3p miRNA MIMAT0002108 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID03150351 mmu-mir-325 miRNA MI0000597 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID03203323 mmu-miR-5132-5p miRNA MIMAT0020643 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID03210106 mmu-miR-6539 miRNA MIMAT0025584 Strn4 mRNA 97387 Prediction 0.2202 Strn4 RAID03242590 mmu-miR-3059-3p miRNA MIMAT0014812 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID03276574 mmu-miR-708-5p miRNA MIMAT0004828 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID03347572 mmu-miR-873a-5p miRNA MIMAT0004936 Strn4 mRNA 97387 Prediction 0.2381 Strn4 RAID03367378 mmu-miR-466o-3p miRNA MIMAT0014886 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID03492951 mmu-miR-466l-3p miRNA MIMAT0005830 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID03535063 mmu-miR-6356 miRNA MIMAT0025099 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID03565756 mmu-miR-377-3p miRNA MIMAT0000741 Strn4 mRNA 97387 Prediction 0.2381 Strn4 RAID03575102 mmu-miR-29a-3p miRNA MIMAT0000535 Strn4 mRNA 97387 Prediction 0.2381 Strn4 RAID03628360 mmu-miR-6953-5p miRNA MIMAT0027806 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID03788010 mmu-miR-6914-5p miRNA MIMAT0027728 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID03857049 mmu-miR-128-3p miRNA MIMAT0000140 Strn4 mRNA 97387 Prediction 0.2202 Strn4 RAID03943712 mmu-miR-182-5p miRNA MIMAT0000211 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID03949624 mmu-miR-146b-5p miRNA MIMAT0003475 Strn4 mRNA 97387 Prediction 0.1828 Strn4 RAID04043330 mmu-miR-761 miRNA MIMAT0003893 Strn4 mRNA 97387 Prediction 0.1828