DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Sh3gl3 ATTTA 116-1159 1301-1305

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 20408 Sh3gl3 cgacGUUUGUAGGC-UGACUUUc | ||| || | ||||||| ggacCUAACUUCAGAACUGAAAu 2 19 12 34 [mm9:7:89455517-89455539:+] 0.4864 157 7 -9.52 -0.9684 MIMAT0004526 mmu-miR-101a* 20408 Sh3gl3 cgUAGU--CGUGACAC-UAUUGACu |||| :| | || ||||||| guAUCAAUUUAAUUUGUAUAACUGa 2 21 136 160 [mm9:7:89455641-89455665:+] 0.5929 150 7 -16.56 -1.3002 MIMAT0000154 mmu-miR-142-5p 20408 Sh3gl3 ucAU-CACGAAAGAUGAAAUAc || ||| | |:| |||||| ugUAUGUG-UGUUUUCUUUAUa 2 20 106 126 [mm9:7:89455611-89455631:+] 0.6608 128 6 -10.86 -0.4948 MIMAT0004535 mmu-miR-150* 20408 Sh3gl3 gauaggggguccGGACAUGGUc ::||||:|| uuuauaauguauUUUGUAUCAa 2 11 121 142 [mm9:7:89455626-89455647:+] 0.6852 126 0 -10.45 -0.1953 MIMAT0004539 mmu-miR-183* 20408 Sh3gl3 aaUAC-CGGGAAGCC---AUU-AAGUg ||| |:|:||:|| ||| |||| --AUGUGUCUUUUGGACCUAACUUCAg 2 21 1 25 [mm9:7:89455506-89455530:+] 0.4864 126 0 -15.14 -0.7983 MIMAT0000234 mmu-miR-201 20408 Sh3gl3 uuCUUGUUACGGAAUGAC-UCAu |:::|:| |:| |||| ||| cuGGGUAGUCCUUGACUGCAGUg 2 21 272 294 [mm9:7:89455777-89455799:+] 0.6009 128 0 -18.80 -0.3088 MIMAT0000249 mmu-miR-30e* 20408 Sh3gl3 cgacauUUGUAGGC-UGACUUUc ||| || | ||||||| ggaccuAACUUCAGAACUGAAAu 2 17 12 34 [mm9:7:89455517-89455539:+] 0.4864 155 7 -9.46 -0.9684 MIMAT0004617 mmu-miR-148a* 20408 Sh3gl3 ucAGCCU-CACAG-AGUCUUGAaa |:||| | | |||||||| uuUUGGACCUAACUUCAGAACUga 3 21 8 31 [mm9:7:89455513-89455536:+] 0.4864 134 0 -15.55 -0.2829 MIMAT0004620 mmu-let-7a* 20408 Sh3gl3 ccuuucugucAUCUAACAUAUc || ||||||| uguaucaauuUAAUUUGUAUAa 2 13 135 156 [mm9:7:89455640-89455661:+] 0.5929 144 7 -3.59 -1.3004 MIMAT0004620 mmu-let-7a* 20408 Sh3gl3 ccuuUCUGUCAUCUAACAUAuc | | ||| |||||| cuuuAUAAUGUAUUUUGUAUca 3 19 120 141 [mm9:7:89455625-89455646:+] 0.6852 130 0 -5.19 -0.7138 MIMAT0004621 mmu-let-7b* 20408 Sh3gl3 cccuuccgucAUCCAACAUAUc || ||||||| uguaucaauuUAAUUUGUAUAa 2 13 135 156 [mm9:7:89455640-89455661:+] 0.5929 144 7 -3.63 -1.3004 MIMAT0004621 mmu-let-7b* 20408 Sh3gl3 cccuuccguCAUCCAACAUAuc ||| |||||| cuuuauaauGUAUUUUGUAUca 3 14 120 141 [mm9:7:89455625-89455646:+] 0.6852 129 0 -4.31 -0.7138 MIMAT0005439 mmu-let-7c-2* 20408 Sh3gl3 ccuuucugucAUCUAACAUAUc || ||||||| uguaucaauuUAAUUUGUAUAa 2 13 135 156 [mm9:7:89455640-89455661:+] 0.5929 144 7 -3.59 -1.3004 MIMAT0005439 mmu-let-7c-2* 20408 Sh3gl3 ccuuUCUGUCAUCUAACAUAuc | | ||| |||||| cuuuAUAAUGUAUUUUGUAUca 3 19 120 141 [mm9:7:89455625-89455646:+] 0.6852 130 0 -5.19 -0.7138 MIMAT0004623 mmu-let-7f* 20408 Sh3gl3 cccuuccGUU--AUCUAACAUAUc ||| || ||||||| uuuguauCAAUUUAAUUUGUAUAa 2 16 133 156 [mm9:7:89455638-89455661:+] 0.5929 146 7 -7.13 -1.2989 MIMAT0004623 mmu-let-7f* 20408 Sh3gl3 cccuuccGUUAUCU--AACAUAuc :|||: | |||||| uucuuuaUAAUGUAUUUUGUAUca 3 16 118 141 [mm9:7:89455623-89455646:+] 0.6852 126 0 -5.07 -0.7138 MIMAT0004624 mmu-miR-15a* 20408 Sh3gl3 acuCCGUCGUGUCAUACCGGAc | || :|: | ||||||| ccuGACAUUAUUG-AUGGCCUc 2 20 337 357 [mm9:7:89455842-89455862:+] 0.6009 149 7 -13.93 -0.5524 MIMAT0004624 mmu-miR-15a* 20408 Sh3gl3 acucCGUCGUGU---CAUACCGGAc || || || | ||||||| aauuGC-GCCCAUUCGAAUGGCCUg 2 19 251 274 [mm9:7:89455756-89455779:+] 0.6009 143 7 -18.22 -0.2655 MIMAT0000551 mmu-miR-323-3p 20408 Sh3gl3 ucucCAGCUGGCACAUUACAc ||: |: | |||||| guguGUUUUCUUUAUAAUGUa 2 18 111 131 [mm9:7:89455616-89455636:+] 0.6608 121 6 -5.75 -0.6588 MIMAT0000650 mmu-miR-17* 20408 Sh3gl3 gauguUCACGGGAGUGACGUCa ||| ||:| ||||||| uggguAGU-CCUUGACUGCAGu 2 18 273 293 [mm9:7:89455778-89455798:+] 0.6009 159 7 -24.08 -0.2254 MIMAT0000672 mmu-miR-199b* 20408 Sh3gl3 cuuguccaucagaUUUGUGACcc | |||||| cccaauaaacaugACACACUGua 3 11 393 415 [mm9:7:89455898-89455920:+] 0.5987 122 0 -6.99 -0.1672 MIMAT0004670 mmu-miR-7a* 20408 Sh3gl3 auACCGU-CUGACACUAAACAac | |:| | | | |||||| uuUUGUAUCAAUUUAAUUUGUau 3 21 132 154 [mm9:7:89455637-89455659:+] 0.5929 127 0 -2.73 -0.2210 MIMAT0002106 mmu-miR-465a-5p 20408 Sh3gl3 aguguagucACGGUAAGAUUUau | :::||||||| uaguuuucuUCUUGUUCUAAAaa 3 15 185 207 [mm9:7:89455690-89455712:+] 0.5507 130 0 -7.72 -0.1263 MIMAT0002107 mmu-miR-466a-3p 20408 Sh3gl3 agaauacacacgcacaUACAUAu |||||| guguguuuucuuuauaAUGUAUu 2 8 111 133 [mm9:7:89455616-89455638:+] 0.6608 120 6 -9.66 -0.4618 MIMAT0002108 mmu-miR-467a-1* 20408 Sh3gl3 caCAUCCACACACA--------UACAUAua ||| |||||| | |||||| uuGUAUGUGUGUUUUCUUUAUAAUGUAUuu 3 21 105 134 [mm9:7:89455610-89455639:+] 0.6608 127 0 -13.90 -0.3222 MIMAT0002108 mmu-miR-467a-1* 20408 Sh3gl3 cacauccacacacauACAUAUa |||||| uguaucaauuuaauuUGUAUAa 2 8 135 156 [mm9:7:89455640-89455661:+] 0.5929 120 6 -4.39 -0.2871 MIMAT0003173 mmu-miR-547 20408 Sh3gl3 gagugaguuucuACAUGGUUc ||||:||| uauaauguauuuUGUAUCAAu 2 10 123 143 [mm9:7:89455628-89455648:+] 0.6852 129 0 -7.21 -0.1922 MIMAT0003186 mmu-miR-369-3p 20408 Sh3gl3 uuucuAGUUGGUACAUAAUAa |: |: ||||||| | uuuucUUUAUAAUGUAUUUUg 2 17 116 136 [mm9:7:89455621-89455641:+] 0.6852 124 0 -4.98 -0.2157 MIMAT0004788 mmu-miR-20b* 20408 Sh3gl3 gaUCUUCACGAGUGUGACGUCa :| ||| ||:: ||||||| ugGGUAGUCCUUG-ACUGCAGu 2 21 273 293 [mm9:7:89455778-89455798:+] 0.6009 158 7 -17.29 -0.2081 MIMAT0003373 mmu-miR-302b* 20408 Sh3gl3 ucuUUCGUAAGGGUACAAUUUca || | || : |||||| ucuAAAAAGUCAUUGGUUAAAug 3 21 200 222 [mm9:7:89455705-89455727:+] 0.6009 128 0 -7.34 -0.1088 MIMAT0003375 mmu-miR-302c* 20408 Sh3gl3 cguccaUUGGGGUA--CAAUUUcg || :||| |||||| uucuaaAAAGUCAUUGGUUAAAug 3 17 199 222 [mm9:7:89455704-89455727:+] 0.6009 127 0 -6.56 -0.1099 MIMAT0003731 mmu-miR-671-5p 20408 Sh3gl3 gaggucggggagguccCGAAGGa |||||| uugguuaaauguauuuGCUUCCu 2 8 212 234 [mm9:7:89455717-89455739:+] 0.6009 120 6 -12.59 -0.1154 MIMAT0003891 mmu-miR-770-3p 20408 Sh3gl3 ggucGAGGUGCAGUCCGGGUGc ||| : || ||||||| caucCUCGCUCUCUGGCCCACu 2 19 74 95 [mm9:7:89455579-89455600:+] 0.6364 154 7 -22.41 -1.0709 MIMAT0003892 mmu-miR-762 20408 Sh3gl3 cgagacagggccgggGUCGGGg |||||| aagcuuaccugugaaCAGCCCa 2 8 375 396 [mm9:7:89455880-89455901:+] 0.5987 120 6 -23.06 -0.1439 MIMAT0003740 mmu-miR-674 20408 Sh3gl3 auGUGGUGAGGGUAGAGUCACg ||||| | |: |||||||| ggCACCAGUGCUCUCUCAGUGu 2 21 40 61 [mm9:7:89455545-89455566:+] 0.6171 172 7 -27.70 -0.3347 MIMAT0003459 mmu-miR-682 20408 Sh3gl3 gucugaAGUGACACUGACGUc || || |||||||| ggguagUC-CU-UGACUGCAg 2 16 274 292 [mm9:7:89455779-89455797:+] 0.6009 147 7 -19.32 -0.2279 MIMAT0003478 mmu-miR-467b* 20408 Sh3gl3 caCAACCACACACA-UACAUAua ||| | | | | |||||| guGUU-UUCUUUAUAAUGUAUuu 3 21 113 134 [mm9:7:89455618-89455639:+] 0.6852 125 0 -7.26 -0.3610 MIMAT0003478 mmu-miR-467b* 20408 Sh3gl3 cacaaccacacacauACAUAUa |||||| uguaucaauuuaauuUGUAUAa 2 8 135 156 [mm9:7:89455640-89455661:+] 0.5929 120 6 -3.07 -0.2871 MIMAT0004827 mmu-miR-297b-3p 20408 Sh3gl3 auacccaUACACACAUACAUAu |||| | | ||||| cuuuauaAUGUAU-UUUGUAUc 2 16 120 140 [mm9:7:89455625-89455645:+] 0.6852 121 0 -4.91 -0.1346 MIMAT0003493 mmu-miR-703 20408 Sh3gl3 aagaaaggaaGACUUCCAAAa || ||||||| gccaugaaagCUAAAGGUUUu 2 12 312 332 [mm9:7:89455817-89455837:+] 0.6009 147 7 -10.53 -0.9209 MIMAT0003497 mmu-miR-707 20408 Sh3gl3 gcauccGUUCGCCGUACUGac ||| |||||| acagccCAAUAAACAUGACac 3 16 389 409 [mm9:7:89455894-89455914:+] 0.5987 123 0 -8.13 -0.1014 MIMAT0004210 mmu-miR-804 20408 Sh3gl3 agguccacuccuuGUUGAGUGu :||||||: gauuucuuuguccUAACUCAUa 2 10 159 180 [mm9:7:89455664-89455685:+] 0.5005 125 0 -11.39 -0.1921 MIMAT0004238 mmu-miR-743a 20408 Sh3gl3 agaugagucgaacCACAGAAAg |||||||| -----------auGUGUCUUUu 2 10 1 11 [mm9:7:89455506-89455516:+] 0.3751 145 7 -10.12 -0.3364 MIMAT0004840 mmu-miR-743b-3p 20408 Sh3gl3 agauaagucgUACUACAGAAAg ||| ||||||| ----------AUG-UGUCUUUu 2 13 1 11 [mm9:7:89455506-89455516:+] 0.3751 146 7 -9.08 -0.3155 MIMAT0004840 mmu-miR-743b-3p 20408 Sh3gl3 agAUAAGUCGUACUACAGAAAg | ||| :|| |||| ||| ugUUUUCUUUAUAAUGUAUUUu 2 21 114 135 [mm9:7:89455619-89455640:+] 0.6852 132 0 -5.42 -0.1061 MIMAT0004850 mmu-miR-883b-5p 20408 Sh3gl3 acUGACGAUGGGUA----AGAGUCAu |:|| ||| :| ||||||| gaAUUGGCACCAGUGCUCUCUCAGUg 2 21 35 60 [mm9:7:89455540-89455565:+] 0.6171 147 7 -17.15 -0.2229 MIMAT0004863 mmu-miR-220 20408 Sh3gl3 uuCAC-AGACUGUGACACCACc ||| ||| || ||||||| caGUGCUCUCUCAGUGUGGUGu 2 20 45 66 [mm9:7:89455550-89455571:+] 0.6171 162 7 -23.09 -0.2747 MIMAT0004864 mmu-miR-297a* 20408 Sh3gl3 auacccaUACACACAUACAUAu |||| | | ||||| cuuuauaAUGUAU-UUUGUAUc 2 16 120 140 [mm9:7:89455625-89455645:+] 0.6852 121 0 -4.91 -0.1346 MIMAT0004866 mmu-miR-297c* 20408 Sh3gl3 auacccaUACACACAUACAUAu |||| | | ||||| cuuuauaAUGUAU-UUUGUAUc 2 16 120 140 [mm9:7:89455625-89455645:+] 0.6852 121 0 -4.91 -0.1346 MIMAT0004871 mmu-miR-465b-5p 20408 Sh3gl3 gucuagucguGGUAAGAUUUau :::||||||| aguuuucuucUUGUUCUAAAaa 3 13 186 207 [mm9:7:89455691-89455712:+] 0.5507 128 0 -5.29 -0.1275 MIMAT0004873 mmu-miR-465c-5p 20408 Sh3gl3 gucuagucgcGGUAAGAUUUau :::||||||| aguuuucuucUUGUUCUAAAaa 3 13 186 207 [mm9:7:89455691-89455712:+] 0.5507 128 0 -5.10 -0.1275 MIMAT0004876 mmu-miR-466b-3p 20408 Sh3gl3 agaauacacacgcacaUACAUAu |||||| guguguuuucuuuauaAUGUAUu 2 8 111 133 [mm9:7:89455616-89455638:+] 0.6608 120 6 -9.66 -0.4618 MIMAT0005453 mmu-miR-466b-3-3p 20408 Sh3gl3 agaauacacacgcacaUACAUAa |||||| guguguuuucuuuauaAUGUAUu 2 8 111 133 [mm9:7:89455616-89455638:+] 0.6608 120 6 -10.39 -0.4618 MIMAT0004878 mmu-miR-466c-3p 20408 Sh3gl3 agaauacacacgcacaUACAUAu |||||| guguguuuucuuuauaAUGUAUu 2 8 111 133 [mm9:7:89455616-89455638:+] 0.6608 120 6 -9.66 -0.4618 MIMAT0004880 mmu-miR-466e-3p 20408 Sh3gl3 agaauacacacgcacaUACAUAu |||||| guguguuuucuuuauaAUGUAUu 2 8 111 133 [mm9:7:89455616-89455638:+] 0.6608 120 6 -9.66 -0.4618 MIMAT0004882 mmu-miR-466f-3p 20408 Sh3gl3 cacacaUACACACACACAUAc |||| | | ||||| uuuauaAUGUAU-UUUGUAUc 2 16 121 140 [mm9:7:89455626-89455645:+] 0.6852 121 0 -4.11 -0.1346 MIMAT0004884 mmu-miR-466h 20408 Sh3gl3 auGUGUGUUCGUGUAC-GUGUGu || |:|| ||||| ||||| ccCA-AUAA--ACAUGACACACu 2 21 393 412 [mm9:7:89455898-89455917:+] 0.5987 123 0 -14.04 -1.1884 MIMAT0004887 mmu-miR-467d* 20408 Sh3gl3 caCAUCCACACACA--------UACAUAua ||| |||||| | |||||| uuGUAUGUGUGUUUUCUUUAUAAUGUAUuu 3 21 105 134 [mm9:7:89455610-89455639:+] 0.6608 127 0 -13.90 -0.3222 MIMAT0004887 mmu-miR-467d* 20408 Sh3gl3 cacauccacacacauACAUAUa |||||| uguaucaauuuaauuUGUAUAa 2 8 135 156 [mm9:7:89455640-89455661:+] 0.5929 120 6 -4.39 -0.2871 MIMAT0004897 mmu-miR-654-5p 20408 Sh3gl3 uguGUACAAGACGUCGAAUGGu | ||||:| |||||||| uuuCCUGUUUU-AAGCUUACCu 2 20 364 384 [mm9:7:89455869-89455889:+] 0.5998 161 7 -16.62 -1.0791 MIMAT0004930 mmu-miR-466d-5p 20408 Sh3gl3 guacauguacaugcgUGUGUGu |||||| agcccaauaaacaugACACACu 2 8 391 412 [mm9:7:89455896-89455917:+] 0.5987 120 6 -11.80 -0.1861 MIMAT0004931 mmu-miR-466d-3p 20408 Sh3gl3 gauacacacgcacaUACAUAu |||||| guguuuucuuuauaAUGUAUu 2 8 113 133 [mm9:7:89455618-89455638:+] 0.6852 120 6 -5.16 -0.5092 MIMAT0005293 mmu-miR-467e 20408 Sh3gl3 ugUAUAUGUACGAGUGUGA-AUa ||| ||||| |||||| || caAUAAACAUG-ACACACUGUAu 2 21 395 416 [mm9:7:89455900-89455921:+] 0.5987 134 0 -16.25 -1.0610 MIMAT0005294 mmu-miR-467e* 20408 Sh3gl3 uauauccacacacauACAUAUa |||||| uguaucaauuuaauuUGUAUAa 2 8 135 156 [mm9:7:89455640-89455661:+] 0.5929 120 6 -2.82 -0.2871 MIMAT0005830 mmu-miR-466l 20408 Sh3gl3 uuAUACACACGUACAUAAAUAu ||||||||: | | ||||| ugUAUGUGUGU-UUUCUUUAUa 2 21 106 126 [mm9:7:89455611-89455631:+] 0.6608 142 0 -15.19 -0.1205 MIMAT0005834 mmu-miR-466i 20408 Sh3gl3 aucacacAUACACACACACAua | ||| ||||||| aaucacuUUUGUAUGUGUGUuu 3 16 97 118 [mm9:7:89455602-89455623:+] 0.6608 139 0 -14.78 -0.1946 MIMAT0005835 mmu-miR-1-2-as 20408 Sh3gl3 accuuacauuucuuCAUACAu |||||| acuuaaucacuuuuGUAUGUg 2 8 93 113 [mm9:7:89455598-89455618:+] 0.6608 120 6 -6.76 -0.2051 MIMAT0005839 mmu-miR-669f 20408 Sh3gl3 uaugcacacacacAUACAUAUac | |||||| uguaucaauuuaaUUUGUAUAac 3 11 135 157 [mm9:7:89455640-89455662:+] 0.5929 122 0 -2.62 -0.1813 MIMAT0005846 mmu-miR-467f 20408 Sh3gl3 acauccacacacacACAUAUa |||||| guaucaauuuaauuUGUAUAa 2 8 136 156 [mm9:7:89455641-89455661:+] 0.5929 120 6 -2.88 -0.2871 MIMAT0005848 mmu-miR-466j 20408 Sh3gl3 aaUGU-GUG-UACGUGUAC-GUGUGu ||| | | || ||||| ||||| gaACAGCCCAAUAAACAUGACACACu 2 22 387 412 [mm9:7:89455892-89455917:+] 0.5987 127 0 -15.25 -1.1901 MIMAT0005852 mmu-miR-1194 20408 Sh3gl3 ucCUAGAUCGUCA--A-UGAGUAag |||:| : || | |||||| cuGAUUUCUUUGUCCUAACUCAUaa 3 21 157 181 [mm9:7:89455662-89455686:+] 0.5005 126 0 -7.69 -0.2205 MIMAT0005854 mmu-miR-467g 20408 Sh3gl3 uauauacacacacaUACAUAu |||||| guguuuucuuuauaAUGUAUu 2 8 113 133 [mm9:7:89455618-89455638:+] 0.6852 120 6 -5.45 -0.5057 MIMAT0005855 mmu-miR-467h 20408 Sh3gl3 ugUAUAUGUACGUGUGUGA-AUa ||| ||||| ||||||| || caAUAAACAUG-ACACACUGUAu 2 21 395 416 [mm9:7:89455900-89455921:+] 0.5987 142 0 -17.63 -1.0610 MIMAT0005858 mmu-miR-1197 20408 Sh3gl3 ucuucaucugguacACAGGAu |||||| auaacugauuucuuUGUCCUa 2 8 153 173 [mm9:7:89455658-89455678:+] 0.5005 120 6 -11.27 -0.2346 MIMAT0009396 mmu-miR-1933-5p 20408 Sh3gl3 uuugauUCUGGCUUGUGGUACUGa || || | | |||||| gugaacAGCCCAAUAAACAUGACa 2 19 385 408 [mm9:7:89455890-89455913:+] 0.5987 126 6 -12.64 -0.2670 MIMAT0009415 mmu-miR-1948 20408 Sh3gl3 gacauGCUCACGAGAC-GGAUUu :|| | ||:|| ||||| auaacUGAUUUCUUUGUCCUAAc 2 18 153 175 [mm9:7:89455658-89455680:+] 0.5005 125 0 -11.17 -1.1513 MIMAT0009417 mmu-miR-1950 20408 Sh3gl3 acuggUAU-AGGAAUCU-ACGUCu :|| ||||| || ||||| ccuggGUAGUCCUU-GACUGCAGu 2 18 271 293 [mm9:7:89455776-89455798:+] 0.6009 122 0 -20.35 -0.1573 MIMAT0009419 mmu-miR-669m 20408 Sh3gl3 uaUAC-AAACACA-CCUACAUAua :|| ||| | | |||||| guGUGUUUUCUUUAUAAUGUAUuu 3 21 111 134 [mm9:7:89455616-89455639:+] 0.6608 126 0 -8.67 -0.3142 MIMAT0009419 mmu-miR-669m 20408 Sh3gl3 uauacaaacacaccuACAUAUa |||||| uguaucaauuuaauuUGUAUAa 2 8 135 156 [mm9:7:89455640-89455661:+] 0.5929 120 6 -2.76 -0.2871 MIMAT0012772 mmu-miR-599 20408 Sh3gl3 caaacUAUUUG-ACUGUGUu |||||| ||||||| gcccaAUAAACAUGACACAc 2 15 392 411 [mm9:7:89455897-89455916:+] 0.5987 161 7 -14.27 -1.1593 MIMAT0012774 mmu-miR-664 20408 Sh3gl3 auccgaccccucaUUUACUUAu |||||||| aacuucagaacugAAAUGAAUu 2 10 18 39 [mm9:7:89455523-89455544:+] 0.4864 145 7 -7.89 -0.3122 MIMAT0000156 mmu-miR-144 20408 Sh3gl3 ucAUGUAGUAGAUAUGACAu |:: |: |:|||| ||| ugUGUUUUCUUUAUAAUGUa 2 19 112 131 [mm9:7:89455617-89455636:+] 0.6852 126 0 -8.82 -0.2692 MIMAT0000215 mmu-miR-186 20408 Sh3gl3 ucggguuuuccucuuAAGAAAc |||||| uuuuguauguguguuUUCUUUa 2 8 103 124 [mm9:7:89455608-89455629:+] 0.6608 120 6 -4.19 -0.4840 MIMAT0000215 mmu-miR-186 20408 Sh3gl3 ucggguuuuccucuuAAGAAAc |||||| auuuguauaacugauUUCUUUg 2 8 147 168 [mm9:7:89455652-89455673:+] 0.5929 120 6 -9.29 -0.1230 MIMAT0000229 mmu-miR-199a-5p 20408 Sh3gl3 cuuguccaucagACU-UGUGACcc ||| |||||| gcccaauaaacaUGACACACUGua 3 12 392 415 [mm9:7:89455897-89455920:+] 0.5987 126 0 -9.46 -0.1672 MIMAT0000567 mmu-miR-329 20408 Sh3gl3 uuuuuccaaucgaccCACACAa |||||| uaaucacuuuuguauGUGUGUu 2 8 96 117 [mm9:7:89455601-89455622:+] 0.6608 120 6 -8.79 -0.2414 MIMAT0004651 mmu-miR-340-5p 20408 Sh3gl3 uuaguCAGAGUAACGAAAUAUu || | || ||||||| uguauGUGUGUUUUCUUUAUAa 2 18 106 127 [mm9:7:89455611-89455632:+] 0.6608 153 7 -6.73 -1.3231 MIMAT0000665 mmu-miR-223 20408 Sh3gl3 accccaUAAACUGUUUGACUGu ||||| ||||||: aauuuaAUUUGUAUAACUGAUu 2 17 141 162 [mm9:7:89455646-89455667:+] 0.5929 140 0 -12.21 -0.1512 MIMAT0000679 mmu-miR-217 20408 Sh3gl3 agGUCAGUCAAGGACU-ACGUCAu ::| :||| |:||| |||||| ccUGGGUAGUCCUUGACUGCAGUg 2 22 271 294 [mm9:7:89455776-89455799:+] 0.6009 137 6 -24.31 -0.3037 MIMAT0004684 mmu-miR-362-3p 20408 Sh3gl3 acUUAG-GAACUUGUCCACACAa |||| ||| ::| |||||| uuAAUCACUUUUGUAUGUGUGUu 2 21 95 117 [mm9:7:89455600-89455622:+] 0.6608 135 6 -14.77 -0.2393 MIMAT0000741 mmu-miR-377 20408 Sh3gl3 uguuuUCAACGGAAACACACua | || : | |||||| uaaucACUUUUGUAUGUGUGuu 3 18 96 117 [mm9:7:89455601-89455622:+] 0.6608 129 0 -9.50 -0.1992 MIMAT0000746 mmu-miR-381 20408 Sh3gl3 ugucucucgaacGGGAACAUAu |::|||||| cccacuuaaucaCUUUUGUAUg 2 11 90 111 [mm9:7:89455595-89455616:+] 0.6364 130 6 -10.85 -0.1130 MIMAT0000746 mmu-miR-381 20408 Sh3gl3 ugucucucgaACG-GGAACAUAu ||: ::|||||| uucuuuauaaUGUAUUUUGUAUc 2 13 118 140 [mm9:7:89455623-89455645:+] 0.6852 127 6 -6.41 -0.5608 MIMAT0000746 mmu-miR-381 20408 Sh3gl3 ugucucucgAACGGGAACAUAu || :|||||| uuguaucaaUUUAAUUUGUAUa 2 14 134 155 [mm9:7:89455639-89455660:+] 0.5929 125 6 -7.30 -0.4063 MIMAT0003727 mmu-miR-374 20408 Sh3gl3 guGAAUCGUCCAACAUAA-UAUa | |: || |||||| ||| aaCAUGACACACUGUAUUCAUAa 2 21 400 422 [mm9:7:89455905-89455927:+] 0.5987 120 0 -5.56 -1.2262 MIMAT0003730 mmu-miR-592 20408 Sh3gl3 ugUAGUAGCG-UAU---AACUGUGUua | || | | ||| ||||||| ugAACAGCCCAAUAAACAUGACACAcu 3 22 386 412 [mm9:7:89455891-89455917:+] 0.5987 127 0 -8.98 -0.1538 MIMAT0003450 mmu-miR-488 20408 Sh3gl3 cugGUUCUU-UGUCGGAAA-GUu :::||| :|| ||||| || cagUGGGAACGCACCCUUUGCAg 2 19 290 312 [mm9:7:89455795-89455817:+] 0.6009 121 0 -13.41 -0.1919

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G013724 Sh3gl3 Mus musculus 20408

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Sh3gl3 mmu-miR-15astar beg:339 end:357 pic:3' ACTCCGTCGTGTCATACCGGAC 5'& || .|. ||||||| &5' -----CATTATTG-ATGGCCT- 3' Sh3gl3 mmu-miR-654-5p beg:366 end:384 pic:3' TGTGTACAAGACGTCGAATGGT 5'& ||||.| |||||||| &5' -----TGTTTTA-AGCTTACC- 3' Sh3gl3 mmu-miR-101astar beg:139 end:161 pic:3' CGTAGTCGTGACACTATTGACT 5'& ||. .||| |||||||| &5' --ATTTAATTTGT-ATAACTGA 3' Sh3gl3 mmu-miR-106bstar beg:43 end:64 pic:3' CGTCGTTCATGGGT--GTCACGCC 5'& |||.|.| |||||.|| &5' ------AGTGCTCTCTCAGTGTGG 3' Sh3gl3 mmu-miR-1197 beg:156 end:174 pic:3' TCTTCATCTGGTAC-ACAGGAT 5'& ||.. ||||||| &5' -------GATTTCTTTGTCCTA 3' Sh3gl3 mmu-miR-1197 beg:0 end:9 pic:3' TCTTCATCTGGTACACAGGAT 5'& |||||||.| &5' -----------ATGTGTCTT- 3' Sh3gl3 mmu-miR-125a-3p beg:363 end:387 pic:3' CCGAGGGTTC--TTGGAGTGGACA 5'& .|||.. || ||.|||||| &5' --TTCCTGTTTTAAGCTTACCTGT 3' Sh3gl3 mmu-miR-146a beg:171 end:193 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& |||.||| .||||.|| &5' AACTCATAAAAA-TAGTTTTC- 3' Sh3gl3 mmu-miR-15astar beg:252 end:275 pic:3' ACTCCGTCGTGT---CATACCGGAC 5'& || || || | |||||||| &5' ----GC-GCCCATTCGAATGGCCTG 3' Sh3gl3 mmu-miR-16 beg:219 end:242 pic:3' GCGGTTATAAATGC---ACGACGAT 5'& .|||||.| ||.||||| &5' -----GTATTTGCTTCCTGTTGCTA 3' Sh3gl3 mmu-miR-17star beg:271 end:294 pic:3' GATGTTCA-CGGGAG-TGACGTCA 5'& ..|| |.|||. |||||||| &5' ----GGGTAGTCCTTGACTGCAGT 3' Sh3gl3 mmu-miR-188-3p beg:284 end:298 pic:3' ACGTTTGGGACGTACACCCTC 5'& ||||| |||||| &5' --------CTGCA-GTGGGA- 3' Sh3gl3 mmu-miR-1929 beg:191 end:216 pic:3' GAG-ACGAGATATTTCAG-GATCTT 5'& || ||.|||| |||||| .|.| &5' -TCTTGTTCTAAAAAGTCATTGG-- 3' Sh3gl3 mmu-miR-1931 beg:296 end:312 pic:3' CGGTAGCGTGGTCGGGAACGTA 5'& ||||| ||.||||| &5' -----CGCAC---CCTTTGCA- 3' Sh3gl3 mmu-miR-195 beg:219 end:242 pic:3' CGGTTATAAA-GAC--ACGACGAT 5'& .||||| || ||.||||| &5' ----GTATTTGCTTCCTGTTGCTA 3' Sh3gl3 mmu-miR-1954 beg:286 end:313 pic:3' TTGTC-CCAGA--GTG--AGACGTCA 5'& .||| || ||| |.||||| &5' -GCAGTGGGAACGCACCCTTTGCAG- 3' Sh3gl3 mmu-miR-1970 beg:390 end:411 pic:3' GTTTCGGATAGGG-GTCACTGTGT 5'& |||| || ||||||| &5' ---AGCCCAATAAACA-TGACACA 3' Sh3gl3 mmu-miR-20bstar beg:272 end:294 pic:3' GATCT-TCACGAGTGTGACGTCA 5'& |.|. ||| ||.. |||||||| &5' -TGGGTAGTCCTTG-ACTGCAGT 3' Sh3gl3 mmu-miR-2135 beg:5 end:24 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& |||.|| ||.| ||.|| &5' -TTTTGGACCTA--ACTTC- 3' Sh3gl3 mmu-miR-214 beg:223 end:239 pic:3' TGACGGACAGACACGGACGACA 5'& .|||.| ||||.|| &5' -TTGCTT-------CCTGTTG- 3' Sh3gl3 mmu-miR-220 beg:48 end:66 pic:3' TTCACAGACTGTGACACCACC 5'& ||| || ||||||| &5' -----TCTCTCAGTGTGGTG- 3' Sh3gl3 mmu-miR-23a beg:47 end:65 pic:3' CCTTTAGGGACCGTTACACTA 5'& |.|| ||.||||.| &5' ------CTCTCTCAGTGTGGT 3' Sh3gl3 mmu-miR-23b beg:44 end:65 pic:3' CCATTAGGGACCGTTACACTA 5'& ||. ||.|| ||.||||.| &5' -GTGCTCTCT--CAGTGTGGT 3' Sh3gl3 mmu-miR-27a beg:373 end:390 pic:3' CGCCTTGAATCGGT--GACACTT 5'& |||. ||||||| &5' ---------AGCTTACCTGTGAA 3' Sh3gl3 mmu-miR-27b beg:373 end:390 pic:3' CGTCTTGAATCGGT--GACACTT 5'& |||. ||||||| &5' ---------AGCTTACCTGTGAA 3' Sh3gl3 mmu-miR-339-3p beg:46 end:69 pic:3' GC-CGAGACAGCGGCTCCGCGAGT 5'& | ||||| || .| ||.|.|| &5' -GTGCTCTCTCAGTGTGGTGTTC- 3' Sh3gl3 mmu-miR-467bstar beg:103 end:117 pic:3' CACAACCACACACATACATATA 5'& |||||||.|.| &5' -----------TGTATGTGTGT 3' Sh3gl3 mmu-miR-467estar beg:103 end:117 pic:3' TATATCCACACACATACATATA 5'& |||||||.|.| &5' -----------TGTATGTGTGT 3' Sh3gl3 mmu-miR-496 beg:34 end:53 pic:3' CTCTAACCGGTACATTATGAGT 5'& |||||| |.|.||| &5' ---ATTGGCACC--AGTGCTC- 3' Sh3gl3 mmu-miR-503 beg:218 end:242 pic:3' GACGTCATGAC-AAGGGCGACGAT 5'& ||.| .|| ||||.|.||||| &5' -TGTAT--TTGCTTCCTGTTGCTA 3' Sh3gl3 mmu-miR-503star beg:37 end:53 pic:3' GGTCCGTCACCTTTGTTATGAG 5'& |||| ||.|.||| &5' ---GGCAC------CAGTGCTC 3' Sh3gl3 mmu-miR-540-3p beg:71 end:92 pic:3' GGTCCTAGCTGGAGACTGGA 5'& || ||| |||||.|| &5' -CATCCTCGCTCTCTGGCC- 3' Sh3gl3 mmu-miR-599 beg:394 end:411 pic:3' CAAACTATTTG-ACTGTGTT 5'& |||||| ||||||| &5' -----ATAAACATGACACA- 3' Sh3gl3 mmu-miR-674 beg:38 end:62 pic:3' ATGTGGTGAGGGTAGAGTCACG 5'& .||||| | |. ||||||||. &5' -GCACCAGTGCTCTCTCAGTGT 3' Sh3gl3 mmu-miR-682 beg:272 end:293 pic:3' GTCTGAAGTGACACTGACGTC 5'& .| || || ||||||||| &5' -GGTAGTC-CT-TGACTGCAG 3' Sh3gl3 mmu-miR-688 beg:371 end:389 pic:3' CTTATTCATCAGCGGACGCT 5'& |||| | ||||.|| &5' ---TAAGC--TTACCTGTGA 3' Sh3gl3 mmu-miR-713 beg:44 end:62 pic:3' CGACACACG-GA-AGTCACGT 5'& |||| || ||||||. &5' -----GTGCTCTCTCAGTGT- 3' Sh3gl3 mmu-miR-741 beg:36 end:58 pic:3' AGATGTATCTTACCGT-------AGAGAGT 5'& ||||| ||||||| &5' -----------TGGCACCAGTGCTCTCTCA 3' Sh3gl3 mmu-miR-743a beg:0 end:12 pic:3' AGATGAGTCGAACCACAGAAAG 5'& ||||||||. &5' -------------GTGTCTTTT 3' Sh3gl3 mmu-miR-767 beg:46 end:67 pic:3' ACGAGTCTGTTGGTACCACGT 5'& ||||| | | ..|||||. &5' TGCTCTCTC-AGTGTGGTGT- 3' Sh3gl3 mmu-miR-770-3p beg:73 end:95 pic:3' GGTCGAGGTGC-AGT--CCGGGTGC 5'& ||| || || ||||||| &5' -----TCCTCGCTCTCTGGCCCAC- 3' Sh3gl3 mmu-miR-7a beg:175 end:194 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& |.|||| ||||.|||. &5' ---ATAAAAA---TAGTTTTCT- 3' Sh3gl3 mmu-miR-877 beg:64 end:86 pic:3' GGGACGCGGTA-GAG-GAGATG 5'& .|||.| ||| ||| |||| &5' -TCTGTGACATCCTCGCTCT-- 3' Sh3gl3 mmu-miR-883a-5p beg:45 end:60 pic:3' CATTGACGATGAAGAGAGTCGT 5'& |.| ||||||||. &5' --------TGC-TCTCTCAGT- 3' Sh3gl3 mmu-miR-883b-5p beg:45 end:61 pic:3' ACTGACGATGGGTAAGAGTCAT 5'& |.|.| |||||||. &5' -------TGCTC--TCTCAGTG 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Sh3gl3 mmu-miR-106a 286 311 AUGGACGUGACAAU--CGUG--AAAC- ||||| || | |||| |||| --ACUGCAGUGGGAACGCACCCUUUGC Sh3gl3 mmu-miR-10a 263 297 GUGUUUAA---GCCUA---------GAUGUC-CCAU |:||| :||:| ||:||| || -UCGAAUGGCCUGGGUAGUCCUUGACUGCAGUGGG- Sh3gl3 mmu-miR-125b 41 65 AGUGUUCAAUCCCAGAGUC-C-CU- ||| ||| |||||| | |: GCACCAGUGCUC-UCUCAGUGUGGU Sh3gl3 mmu-miR-140* 43 67 AGG-CACCAAGAUGGG--ACACCAU- || ||| ||| |:| ||||||: ACCAGUGC-UCU-CUCAGUGUGGUGU Sh3gl3 mmu-miR-143 39 59 ACUCGAUGUCACGAAGUAGAGU- :|| ||||||| | ||||| -UGGCACCAGUGCU-C-UCUCAG Sh3gl3 mmu-miR-16 207 243 GCGGU----------UAUAAAUGC---ACGACGAU- |:|| :|||||:| ||:||||| AGUCAUUGGUUAAAUGUAUUUGCUUCCUGUUGCUAA Sh3gl3 mmu-miR-17-3p 273 295 AUGUUCA-CGGGAG-UGACGUCA- ::|| |:|||: |||||||| --UGGGUAGUCCUUGACUGCAGUG Sh3gl3 mmu-miR-17-5p 281 311 UGAUG-GACGUGACAUU--CGUG--AAAC- || ||||| || |||| |||| CCUUGACUGCAGUGGGAACGCACCCUUUGC Sh3gl3 mmu-miR-18 286 306 AUAGACGUGAUCUA--CGUGGAAU ||||| |:|: ||||| --ACUGCAGUGGGAACGCACCC-- Sh3gl3 mmu-miR-183 44 67 -GUCACUUAAGAUGGUCACGGUAU- ||||| ||| :|||||: :|: CCAGUGC--UCUCUCAGUGUGGUGU Sh3gl3 mmu-miR-194 54 77 AGGU-GUACCUCAACGACAAUGU- :|| ::||| ||| |||| ||| CUCAGUGUGGUGUU-CUGUGACAU Sh3gl3 mmu-miR-199a 264 298 -CUUG-----UCCAUCAG--ACU--UGUGACCC- |||: :||||||| ||| :|| |||| CGAAUGGCCUGGGUAGUCCUUGACUGCAGUGGGA Sh3gl3 mmu-miR-199b 264 298 -CUUG-----UCCAUCAG--AUU--UGUGACCC- |||: :||||||| |:| :|| |||| CGAAUGGCCUGGGUAGUCCUUGACUGCAGUGGGA Sh3gl3 mmu-miR-200a 36 63 UGUAGCAAUGGUCU-------GUCACAAU ||:| ||||| |||||| -AAUUGGCACCAGUGCUCUCUCAGUGUG- Sh3gl3 mmu-miR-201 273 296 UCUUGUUACGGAA-UGAC-UCAU- | :|:| |||| |||| |||: UGGGUAGU-CCUUGACUGCAGUGG Sh3gl3 mmu-miR-20b 286 311 AUGGACGUGAUACU--CGUG--AAAC- ||||| | || |||| |||| --ACUGCAGUGGGAACGCACCCUUUGC Sh3gl3 mmu-miR-214 352 374 GACGGA---CAGACACGGACGACA |||| |||| ||||:| -GGCCUCUGGUCUUUUCCUGUUU- Sh3gl3 mmu-miR-217 271 296 UAGGUCAGUCAAGGACU-ACGUCAU- |::| :||| |:||| ||||||: -CCUGGGUAGUCCUUGACUGCAGUGG Sh3gl3 mmu-miR-23a 273 299 -CCU-UUAGGGAC---CGUUACACUA ||: |:|||:|| |||:|| || UGGGUAGUCCUUGACUGCAGUGGGAA Sh3gl3 mmu-miR-23b 274 299 -CCAUUAGGGAC---CGUUACACUA ||||:|||:|| |||:|| || GGGUAGUCCUUGACUGCAGUGGGAA Sh3gl3 mmu-miR-26a 256 288 -CGGAUA--------GGACCUAAU--GAACUU ||| |||||:| ||||| CGCCCAUUCGAAUGGCCUGGGUAGUCCUUGAC Sh3gl3 mmu-miR-29a 42 69 UUGGCUAA-----AGUC-UACCACGAU ||| :| |||| :|||||:| CACCAGUGCUCUCUCAGUGUGGUGUUC Sh3gl3 mmu-miR-301b 236 260 -ACGAAACUGUUAUGGUAACGUGAC |||| ||:| |||||:| UUGCUAAAACGAGUAAAUUGCGCC- Sh3gl3 mmu-miR-324-3p 244 297 -GGUCGU----CG-------------UGGACCC------- CGUCACC | ||:| || :|||||| ||||||| ACGAGUAAAUUGCGCCCAUUCGAAUGGCCUGGGUAGUCCUUGACUGCAGUGGG Sh3gl3 mmu-miR-350 57 75 ACUUUCACAUACC-CGAAACACUU ||:||| |:| ||||| ------AGUGUGGUGUUCUGUGAC Sh3gl3 mmu-miR-370 268 298 -UUGGUCCA---AGG---UGGGGUCGUCCG ::|| || ||| ||: |||::|| UGGCCUGGGUAGUCCUUGACUGCAGUGGGA Sh3gl3 mmu-miR-376b 56 75 UUUCAC-CUACAAGGAGAUACUA |||| |:||| |||:||| -CAGUGUGGUGU---UCUGUGAC Sh3gl3 mmu-miR-433-3p 382 408 UGUGGCUCCUCGGGUA----GUACUA | :|| |||||| ||||| CCUGUGAACAGCCCAAUAAACAUGAC Sh3gl3 mmu-miR-455-3p 269 293 UCACAUAUACGGGCAC--------CUGACGUA |||:| ||||||| --------GGCCUGGGUAGUCCUUGACUGCAG Sh3gl3 mmu-miR-465-3p 337 364 AGAUG--AAUCUUU-CCGG-GACUAG- ||: ||| :| |||| |||:|| CCUGACAUUAUUGAUGGCCUCUGGUCU Sh3gl3 mmu-miR-468 289 319 -GUCUGUG-UGCGUGUA----GUCAGUAU- ||| : |||||| ||| |||: GCAGUGGGAACGCACCCUUUGCAGCCAUGA Sh3gl3 mmu-miR-485-5p 343 367 CUUAAGUAG-UGCCGG---UCGGAGA- |:||: |:|||| :|:||:| ---AUUAUUGAUGGCCUCUGGUCUUUU Sh3gl3 mmu-miR-503 221 243 CGUCAU-GAC-AAGGGCGACGAU- ||| :|| ||||:|:||||| --UGUAUUUGCUUCCUGUUGCUAA Sh3gl3 mmu-miR-540 78 93 GGUCCUAGCUGGAGACUGGA ||| :|||||:|| -----CUCGCUCUCUGGCCC Sh3gl3 mmu-miR-542-3p 54 77 AAAGUCAAUAGUU-AGACAGUGU- ||||| ||||| ||| -CUCAGUGUGGUGUUCUGUGACAU Sh3gl3 mmu-miR-542-5p 57 83 GCACUGUAC----UACU--AGGGGCUC ||| :|| :||| |||:|| AGUGUGGUGUUCUGUGACAUCCUCGC- Sh3gl3 mmu-miR-665 351 372 AUUCCCUGGAG-UCGG---AGGACCA |:|||| :|:| ||||| ----UGGCCUCUGGUCUUUUCCUGU- Sh3gl3 mmu-miR-674 40 63 AUGUGGUGAGGGUAGAGUCACG- :||||| | |: ||||||||: GGCACCAGUGCUCUCUCAGUGUG Sh3gl3 mmu-miR-675-5p 288 317 -UGACACCC------GGGAAAGGCGU-GGU- :| ||||| ||||| :||| ||| UGCAGUGGGAACGCACCCUU--UGCAGCCAU Sh3gl3 mmu-miR-682 274 294 GUCUGAAGUGACACUGACGUC- :| || || ||||||||| GGGUAGUC-CU-UGACUGCAGU Sh3gl3 mmu-miR-685 287 320 CACGGA--------GUGGA----GUCGGUAACU- ||| |||| ||||||| || CUGCAGUGGGAACGCACCCUUUGCAGCCAU-GAA Sh3gl3 mmu-miR-689 274 302 -CCU---GGGGC-GGC-UCGCCCCUGC- || || | |:| ||:||| ||| GGGUAGUCCUUGACUGCAGUGGGAACGC Sh3gl3 mmu-miR-693-3p 306 325 -AAUGUCGGUGUAGACUUUCGACG ||:|||||| |||||||| UUUGCAGCCA----UGAAAGCUA- Sh3gl3 mmu-miR-695 375 400 AAGUC-AGUGGAUA-----CGGGUUAGA || |:||||:| ||||||| --AAGCUUACCUGUGAACAGCCCAAUA- Sh3gl3 mmu-miR-705 68 93 -ACGG-GUGGG-GUG-GAGGGUGG- ||: ||:|| |:| |||: :|| CUGUGACAUCCUCGCUCUCUGGCCC Sh3gl3 mmu-miR-707 268 291 GCAUCCGUUCGCCGU-----ACUGAC- ||| | ||:| |||||| ---UGGCCUG-GGUAGUCCUUGACUGC Sh3gl3 mmu-miR-711 72 94 GAAUGUAGA---GAGGGGCCCAGGG- ||||| |||:|:|| ||| --GACAUCCUCGCUCUCUGG--CCCA Sh3gl3 mmu-miR-713 46 63 CGACACACG-GA-AGUCACGU |||| || ||||||: ----AGUGCUCUCUCAGUGUG Sh3gl3 mmu-miR-714 254 283 -CGCU----GGCUGGCCGGGAG---CAGC ||| :||| ||||: ||| UGCGCCCAUUCGAAUGGCCUGGGUAGUCC Sh3gl3 mmu-miR-741 27 59 -GAUGUAUCUU-ACCGU-------AGAGAGU- ||: ||| ||||| ||||||| ACUGAAAUGAAUUGGCACCAGUGCUCUCUCAG Sh3gl3 mmu-miR-743 50 71 -AGAUGAGUCGAACCAC-AGAAA ||| |||||: ||||| ||| CUCU-CUCAGUGUGGUGUUCUG- Sh3gl3 mmu-miR-759 341 361 CAGUUUUAACAAACGUGAGACG || |||| || ||||| -ACAUUAUUGAUGGC-CUCUGG Sh3gl3 mmu-miR-762 64 94 -CGAGAC-----AGGGCCGGGG--UCGGGG |:|||| |||: ||:|: :|||| UGUUCUGUGACAUCCUCGCUCUCUGGCCCA Sh3gl3 mmu-miR-763 352 381 -CGGUGACCA-AGAAGGG------UCGACC ||| ||||| |:||||: |||| GGCCUCUGGUCUUUUCCUGUUUUAAGCUU- Sh3gl3 mmu-miR-764-3p 338 360 UGUCAACGGUGAU----ACCGGAGGA || ||:|| |||||||: ----CUGACAUUAUUGAUGGCCUCUG Sh3gl3 mmu-miR-770-3p 68 96 -GGUCG--AGGUGC-AGU--CCGGGUGC : | ||| || || ||||||| CUGUGACAUCCUCGCUCUCUGGCCCACU Sh3gl3 mmu-miR-9 307 330 GUAUGUCGAU-CUAUUGGUUUCU- |:|||| || |:|:||||: -UUGCAGCCAUGAAAGCUAAAGGU Sh3gl3 mmu-miR-17-3p 286 293 AUG--------------------UUCA-CGGGAG-UGACGUCA ::|| |:|||: |||||||| AAUUGCGCCCAUUCGAAUGGCCUGGGUAGUCCUUGACUGCAGUG Sh3gl3 mmu-miR-455-3p 285 292 UC---------------------ACAUAUACGGGCACCUGACGUA || || |:|| ||||||| AAAUUGCGCCCAUUCGAAUGGCCUGGGUA-GUCCUU-GACUGCAG Sh3gl3 mmu-miR-674 54 61 A---------------------UGUGGUGAGGGUAGAGUCACG :||||| | |: ||||||||: ACUUCAGAACUGAAAUGAAUUGGCACCAGUGCUCUCUCAGUGUG Sh3gl3 mmu-miR-682 285 292 G------------------------UCUGAAGUGACACUGACGUC :| || || ||||||||| AAAUUGCGCCCAUUCGAAUGGCCUGGGUAGUC-CU-UGACUGCAGU Sh3gl3 mmu-miR-770-3p 88 95 --GGUCG----------------AGGUGC-AGU--CCGGGUGC :|||: ||| || || ||||||| UCUCAGUGUGGUGUUCUGUGACAUCCUCGCUCUCUGGCCCACU Sh3gl3 mmu-miR-106a 284 309 AUGGACGUGACAAU--CGU--GAAAC |: ||||| || | ||| ||||| TGACTGCAGTGGGAACGCACCCTTTG Sh3gl3 mmu-miR-10a 256 278 GUGUUUAAGCCUAGAUGUCCCAU |:| ||||| || | ||||| CGCCCATTCGAATGGCCTGGGTA Sh3gl3 mmu-miR-16 214 241 gCGGUU---AUAAAU---GCACGACGAU |::|| |||||: | ||:||||| gGTTAAATGTATTTGCTTCCTGTTGCTA Sh3gl3 mmu-miR-17-3p 274 293 auguUCACGGGAGUGACGUCA ||| ||:| |||||||| gggtAGT-CCTTGACTGCAGT Sh3gl3 mmu-miR-17-5p 282 309 ugAUGGACGUGACAUU--CGU--GAAAC |: ||||| || :| ||| ||||| ctTGACTGCAGTGGGAACGCACCCTTTG Sh3gl3 mmu-miR-18 284 307 AUAGACGUGAUC--UACGUGGAAu |: ||||| |:| | ||||| | TGACTGCAGTGGGAACGCACCCTt Sh3gl3 mmu-miR-183 31 54 gUCACUUAA--GAUGGUCACGguau | |||||| | |||||||| aAATGAATTGGC-ACCAGTGCtctc Sh3gl3 mmu-miR-194 55 75 AGGUGUACCUCAACGACAAUGU || :::||| ||| |||| ||| TCAGTGTGGTGTT-CTGTGACA Sh3gl3 mmu-miR-199a 269 296 CUUG-UCCAUCAG--ACU--UGUGACCC |: | :||||||| ||| :|| |||| GGCCTGGGTAGTCCTTGACTGCAGTGGG Sh3gl3 mmu-miR-199b 269 296 CUUG-UCCAUCAG--AUU--UGUGACCC |: | :||||||| |:| :|| |||| GGCCTGGGTAGTCCTTGACTGCAGTGGG Sh3gl3 mmu-miR-200a 35 63 ugUAGCAAUGGUC-------UGUCACAau ||:| ||||| |||||| gaATTGGCACCAGTGCTCTCTCAGTGTgg Sh3gl3 mmu-miR-20b 284 309 AUGGACGUGAUACU--CGU--GAAAC |: ||||| |: || ||| ||||| TGACTGCAGTGGGAACGCACCCTTTG Sh3gl3 mmu-miR-214 351 374 gaCGGA---CAGACACGGACGAca |||| |||| | ||||:| tgGCCTCTGGTCTTTTCCTGTTtt Sh3gl3 mmu-miR-217 270 294 uaGGUCAGUCAAGGACU-ACGUCAu |::| :||| |:||| |||||| gcCTGGGTAGTCCTTGACTGCAGTg Sh3gl3 mmu-miR-23a 275 298 CCUUUAGGGAC---CGUUACACUa || |:|||:|| |||:|| || GGTAGTCCTTGACTGCAGTGGGAa Sh3gl3 mmu-miR-23b 275 298 CCAUUAGGGAC---CGUUACACUa ||||:|||:|| |||:|| || GGTAGTCCTTGACTGCAGTGGGAa Sh3gl3 mmu-miR-26a 265 287 cggAUAGGACCUA--AUGAACUu |: |||||:| | ||||| gaaTGGCCTGGGTAGTCCTTGAc Sh3gl3 mmu-miR-29a 47 68 uuggcuAAAGUC-UACCACGAu | |||| :|||||:| gtgctcTCTCAGTGTGGTGTTc Sh3gl3 mmu-miR-301b 237 260 ACGAAACUG-UUAUGGUAACGUGac |||| || |:|| |||||:| TGCTAAAACGAGTA-AATTGCGCcc Sh3gl3 mmu-miR-324-3p 271 295 GG--UCGUCGUGGAC-CCCGUCACC || :|:||: |:|| ||||||| CCTGGGTAGTCCTTGACTGCAGTGG Sh3gl3 mmu-miR-350 53 74 acuuUCACAUACCCGAAACACUu |||||: | |:| ||||| tctcAGTGTG-GTGTTCTGTGAc Sh3gl3 mmu-miR-370 270 297 uuGGUCCA--AGG---UGGGGUCGUCCg |::||| ||| ||: |||::|| gcCTGGGTAGTCCTTGACTGCAGTGGGa Sh3gl3 mmu-miR-376b 55 74 uuUCAC-CUACAAGGAGAUACUa |||| |:||| |||:||| tcAGTGTGGTGT---TCTGTGAc Sh3gl3 mmu-miR-433-3p 379 407 ugUGG---CUCCUCGGG----UAGUACUa ||| || ||||| | ||||| ttACCTGTGAACAGCCCAATAAACATGAc Sh3gl3 mmu-miR-455-3p 271 292 ucACAUAUACGGGCACCUGACGUa || :|| |:|| | ||||||| ccTGGGTA-GTCC-TTGACTGCAg Sh3gl3 mmu-miR-468 295 317 gucUGUGUGCGUGUAGUCAGUAu ||:||| | : ||| ||| ggaACGCACCCTTTGCAGCCATg Sh3gl3 mmu-miR-485-5p 337 358 cuuaaGUAGUGCCGGUCGGAGA |||:|: | ::|||||| cctgaCATTATTGATGGCCTCT Sh3gl3 mmu-miR-503 219 241 cguCAU-GAC-AAGGGCGACGAU ||| :|| ||||:|:||||| aatGTATTTGCTTCCTGTTGCTA Sh3gl3 mmu-miR-540 73 92 gGUCCUAGCUGGAGACUGGa || ||| :|||||:|| aCATCCTCGCTCTCTGGCCc Sh3gl3 mmu-miR-542-3p 53 75 AAAGUCA-AUAGUUAGACAGUGU | ||||| |: :: ||||| ||| TCTCAGTGTGGTGTTCTGTGACA Sh3gl3 mmu-miR-542-5p 62 83 gCACUGUACUAC--UAGGGGCuc ||| : || || ||||:|| gGTGTTCTG-TGACATCCTCGct Sh3gl3 mmu-miR-665 348 372 AUUCCCUGGAGUC----GGAGGACca |:| || |||| | ::||||| TGATGG-CCTCTGGTCTTTTCCTGtt Sh3gl3 mmu-miR-666 48 83 cCGAGAGUGUC---------GAC-----ACGGGCGA |||||| ||| ||| | |:|||| tGCTCTCTCAGTGTGGTGTTCTGTGACATCCTCGCT Sh3gl3 mmu-miR-674 40 61 auGUGGUGAGGGUAGAGUCACg ||||| | |: |||||||| ggCACCAGTGCTCTCTCAGTGt Sh3gl3 mmu-miR-675-5p 289 305 uGACACCCGGGAAAGGCGUGGu | ||||| |||||| gCAGTGGGAA-----CGCACCc Sh3gl3 mmu-miR-682 274 292 gucugaAGUGACACUGACGUC || || ||||||||| gggtagTC-CT-TGACTGCAG Sh3gl3 mmu-miR-685 292 319 CAC---GGAGUGG---A-GUCGGUAacu ||| | |||| | ||||||| GTGGGAACGCACCCTTTGCAGCCATgaa Sh3gl3 mmu-miR-689 278 300 cCUGGGGC-GGC-UCGCCCCUGC | ||::| |:| ||:||| ||| aGTCCTTGACTGCAGTGGGAACG Sh3gl3 mmu-miR-693-3p 307 325 AAUGUCGGUGUAGACUUUCGAcg ||:|||||| |||||||| TTGCAGCCA----TGAAAGCTaa Sh3gl3 mmu-miR-695 373 400 AAGUC-AGUGGAUA-----CGGGUUAga || || |:||||:| ||||||| TTAAGCTTACCTGTGAACAGCCCAATaa Sh3gl3 mmu-miR-705 71 95 ACGGGUGGGGUG---GA--GGGUGg || | ||:|:| || ||||| TGACATCCTCGCTCTCTGGCCCACt Sh3gl3 mmu-miR-707 271 289 GCAUCCGUUCGCCGUACUGAC | |:||:|: | | |||||| CCTGGGTAGTC--CTTGACTG Sh3gl3 mmu-miR-711 70 93 gAAUGUA-GAGAG-GGGCCCAGGg | |||| ||| | |:| || || gTGACATCCTCGCTCTCTGGCCCa Sh3gl3 mmu-miR-713 44 62 cGACACACGGAAGUCACgu | ||| |: |||||| cCAGTGCTCTCTCAGTGtg Sh3gl3 mmu-miR-714 263 288 cGCUGGCUGG---C--CGGGAGCAGc ||| :|:|| | |:|||:| | tCGAATGGCCTGGGTAGTCCTTGACt Sh3gl3 mmu-miR-741 28 57 GAUGUAUCUU-ACCG-------UAGAGAGU ||: | ||| |||| ||||||| CTGAAATGAATTGGCACCAGTGCTCTCTCA Sh3gl3 mmu-miR-743 51 71 AGAUGAGUCGAACCAC-AGAaa ||| |||||: ||||| ||| TCT-CTCAGTGTGGTGTTCTgt Sh3gl3 mmu-miR-759 340 360 CAGUUUUAACAAACGUGAGACg | || |||| | || ||||| GACATTATTGATGGC-CTCTGg Sh3gl3 mmu-miR-762 65 93 CGAGACA------GGGC-CGGGGUCGGGg |:||||| |:|| |:|::|||| GTTCTGTGACATCCTCGCTCTCTGGCCCa Sh3gl3 mmu-miR-763 353 374 CGGUGACCAAGAAGGGUCGAcc ||| ||||| :||:|| |:| GCCTCTGGTCTTTTCCTGTTtt Sh3gl3 mmu-miR-764-3p 334 359 ugucaACGGUGA----UACCGGAGga || ||:| |||||||| tttccTGACATTATTGATGGCCTCtg Sh3gl3 mmu-miR-770-3p 71 95 ggucgAGGUGC---AGUCCGGGUGc ||| || || ||||||| tgacaTCCTCGCTCTCTGGCCCACt Sh3gl3 mmu-miR-9 306 328 guAUGUCGAU-CUAUUGGUUUCu |:|||| | || |:|:|||| ttTGCAGCCATGAAAGCTAAAGg

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Sh3gl3 RAID00023998 mmu-miR-374b-5p miRNA MIMAT0003727 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID00090279 mmu-miR-362-3p miRNA MIMAT0004684 Sh3gl3 mRNA 20408 CLIP-seq//Prediction 0.6308 Sh3gl3 RAID00172411 mmu-miR-6949-5p miRNA MIMAT0027798 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID00266854 mmu-miR-30a-3p miRNA MIMAT0000129 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID00342317 mmu-let-7f-1-3p miRNA MIMAT0004623 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID00386236 mmu-miR-6937-3p miRNA MIMAT0027775 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID00472875 mmu-miR-223-3p miRNA MIMAT0000665 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID00485587 mmu-miR-98-3p miRNA MIMAT0017023 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID00503138 mmu-miR-15a-3p miRNA MIMAT0004624 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID00534906 mmu-miR-205-3p miRNA MIMAT0017003 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID00793782 mmu-miR-7212-3p miRNA MIMAT0028393 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID00815671 mmu-miR-217-5p miRNA MIMAT0000679 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID00826533 mmu-let-7b-3p miRNA MIMAT0004621 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID01085589 mmu-miR-770-3p miRNA MIMAT0003891 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID01189308 mmu-miR-3473d miRNA MIMAT0020632 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID01233463 mmu-miR-1948-5p miRNA MIMAT0017344 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID01404098 mmu-miR-592-5p miRNA MIMAT0003730 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID01500181 mmu-miR-6390 miRNA MIMAT0025139 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID01562850 mmu-miR-466m-3p miRNA MIMAT0014883 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID01586358 mmu-miR-3085-5p miRNA MIMAT0014878 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID01789148 mmu-miR-199a-5p miRNA MIMAT0000229 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID01866180 mmu-miR-3552 miRNA MIMAT0035715 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID01903663 mmu-miR-6903-3p miRNA MIMAT0027707 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID01918890 mmu-miR-30e-3p miRNA MIMAT0000249 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID01952798 mmu-miR-217-3p miRNA MIMAT0017072 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID02011938 mmu-miR-144-3p miRNA MIMAT0000156 Sh3gl3 mRNA 20408 CLIP-seq//Prediction 0.6308 Sh3gl3 RAID02018283 mmu-miR-466o-3p miRNA MIMAT0014886 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID02168268 mmu-let-7c-2-3p miRNA MIMAT0005439 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID02369052 mmu-miR-539-3p miRNA MIMAT0017208 Sh3gl3 mRNA 20408 CLIP-seq 0.5483 Sh3gl3 RAID02414858 mmu-miR-1947-3p miRNA MIMAT0017343 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID02448153 mmu-miR-599 miRNA MIMAT0012772 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID02449219 mmu-miR-101a-5p miRNA MIMAT0004526 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID02545629 mmu-miR-488-3p miRNA MIMAT0003450 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID02555692 mmu-miR-30d-3p miRNA MIMAT0017011 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID02749194 mmu-miR-3618-3p miRNA MIMAT0035717 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID02863872 mmu-miR-381-3p miRNA MIMAT0000746 Sh3gl3 mRNA 20408 CLIP-seq//Prediction 0.6308 Sh3gl3 RAID03174897 mmu-miR-340-5p miRNA MIMAT0004651 Sh3gl3 mRNA 20408 CLIP-seq//Prediction 0.6559 Sh3gl3 RAID03314094 mmu-miR-186-5p miRNA MIMAT0000215 Sh3gl3 mRNA 20408 CLIP-seq//Prediction 0.6308 Sh3gl3 RAID03534775 mmu-miR-329-3p miRNA MIMAT0000567 Sh3gl3 mRNA 20408 CLIP-seq//Prediction 0.6308 Sh3gl3 RAID03540130 mmu-let-7a-1-3p miRNA MIMAT0004620 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID03544771 mmu-mir-325 miRNA MI0000597 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID03837858 mmu-miR-377-3p miRNA MIMAT0000741 Sh3gl3 mRNA 20408 CLIP-seq//Prediction 0.6308 Sh3gl3 RAID03940972 mmu-miR-7242-5p miRNA MIMAT0028452 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID03986473 mmu-miR-674-5p miRNA MIMAT0003740 Sh3gl3 mRNA 20408 Prediction 0.1828 Sh3gl3 RAID04030317 mmu-miR-654-5p miRNA MIMAT0004897 Sh3gl3 mRNA 20408 Prediction 0.1828