| DNA & RNA Element - AREsite | | Gene Name | Motif | CDS Area | ARE Area | Evidence |
|---|
| Nsmce1; mCG_20544 | ATTTA | 93-935 | 974-978 | Identification of a target RNA motif for RNA-binding protein HuR.#Proc Natl Acad Sci U S A 2004; 101(9): 2987-92.! | |
| DNA & RNA Element - microRNA | | Mirbase Acc | miRNA Name | Gene ID | Gene Symbol | miRNA Alignment | Alignment | Gene Alignment | miRNA Start | miRNA End | Gene Start | Gene End | Genome Coordinates | Conservation | Align Score | Seed Cat | Energy | mirSVR Score |
|---|
| MIMAT0004670 | mmu-miR-7a* | 67711 | Nsmce1 | auaccgucuGACACUAAACAAc | :||| ||||||| | gugccuccuUUGUUAUUUGUUc | 2 | 14 | 52 | 73 | [mm9:7:132611205-132611226:-] | 0.5047 | 153 | 7 | -8.99 | -0.8372 | | MIMAT0003455 | mmu-miR-679 | 67711 | Nsmce1 | ugGUUCUCAGU-GGAGUGUCAGg | | :|: | | |||||||||| | uuCUGGGCUGACCCUCACAGUCc | 2 | 21 | 16 | 38 | [mm9:7:132611240-132611262:-] | 0.4977 | 159 | 7 | -26.07 | -0.2073 | | MIMAT0004883 | mmu-miR-466g | 67711 | Nsmce1 | acAC-ACACGU-ACAC-AGACAUa | || || ||: |||| |||||| | ccUGAUG-GCGCUGUGCUCUGUAa | 2 | 20 | 98 | 120 | [mm9:7:132611158-132611180:-] | 0.5017 | 123 | 6 | -16.58 | -0.3963 | | MIMAT0005858 | mmu-miR-1197 | 67711 | Nsmce1 | ucuucaucugguACACAGGAu | |||||||| | -----------cUGUGUCCUg | 2 | 10 | 1 | 10 | [mm9:7:132611268-132611277:-] | 0.6019 | 145 | 7 | -13.81 | -0.4650 | | MIMAT0003182 | mmu-miR-494 | 67711 | Nsmce1 | cucCAAAGGGCACAUACAAAGu | ||||:: || ||||||| | cacGUUUUUAGUAAAUGUUUCc | 2 | 20 | 78 | 99 | [mm9:7:132611179-132611200:-] | 0.5017 | 163 | 7 | -10.67 | -0.8143 | |
| DNA & RNA Element - TRANSFAC | | Accession | AS | Description | Species | Entrez | Pubmed | Binding Info |
|---|
| G061809 | | Nsmce1 | Mus musculus | 67711 | | | |
| DNA & RNA Element - RepTar | | Gene Name | miRNA | Begin | End | Profile |
|---|
| Nsmce1 | mmu-miR-1197 | beg:0 | end:11 | pic:3' TCTTCATCTGGTACACAGGAT 5'& ||||||||. &5' ------------TGTGTCCTG 3' | | Nsmce1 | mmu-miR-146a | beg:56 | end:77 | pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& ||. || |||. |||||.| &5' --CCTTTGTTATTT-GTTCTTA 3' | | Nsmce1 | mmu-miR-146b | beg:51 | end:77 | pic:3' TCGGAT---ACCTTAAGTCAAGAGT 5'& |||| || |||. |||||.| &5' -GCCTCCTTTGTTATTT-GTTCTTA 3' | | Nsmce1 | mmu-miR-21star | beg:31 | end:54 | pic:3' CTGTCGGGTAG---CTGACGACAAC 5'& ||||.||||. |||||| || &5' -ACAGTCCATTTAGGACTGCCGT-- 3' | | Nsmce1 | mmu-miR-679 | beg:15 | end:39 | pic:3' TGGTTCTCAGTGGAGTGTCAGG 5'& | .| ||||||||||| &5' -CTGGGCTGACCCTCACAGTCC 3' | |
| DNA & RNA Element - RAID2 | | Gene Name | RAID ID | Interactor 1 | Category 1 | ID 1 | Interactor 2 | Category 2 | ID 2 | Methods | Score |
|---|
| Nsmce1 | RAID02583886 | mmu-miR-494-3p | miRNA | MIMAT0003182 | Nsmce1 | mRNA | 67711 | Prediction | 0.1828 | |