DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Rnf141; Znf230 ATTTA 158-850 2018-2022;3287-3291;3529-3533;3830-3834;3836-3840 Regulation of tristetraprolin during differentiation of 3T3-L1#FEBS J 2007; 274(3): 867-78.!The role of mRNA turnover in the regulation of tristetraprolin#J Immunol 2004; 172(12): 7263-71.! Rnf141; Znf230 WTATTTATW 158-850 3828-3836;3834-3842 Regulation of tristetraprolin during differentiation of 3T3-L1#FEBS J 2007; 274(3): 867-78.!The role of mRNA turnover in the regulation of tristetraprolin#J Immunol 2004; 172(12): 7263-71.! Rnf141; Znf230 WWATTTAWW 158-850 2016-2024;3285-3293;3828-3836;3834-3842 Regulation of tristetraprolin during differentiation of 3T3-L1#FEBS J 2007; 274(3): 867-78.!The role of mRNA turnover in the regulation of tristetraprolin#J Immunol 2004; 172(12): 7263-71.! Rnf141; Znf230 WWTATTTATWW 158-850 3827-3837;3833-3843 Regulation of tristetraprolin during differentiation of 3T3-L1#FEBS J 2007; 274(3): 867-78.!The role of mRNA turnover in the regulation of tristetraprolin#J Immunol 2004; 172(12): 7263-71.! Rnf141; Znf230 WWWATTTAWWW 158-850 2015-2025;3827-3837;3833-3843 Regulation of tristetraprolin during differentiation of 3T3-L1#FEBS J 2007; 274(3): 867-78.!The role of mRNA turnover in the regulation of tristetraprolin#J Immunol 2004; 172(12): 7263-71.! Rnf141; Znf230 WWWTATTTATWWW 158-850 3826-3838 Regulation of tristetraprolin during differentiation of 3T3-L1#FEBS J 2007; 274(3): 867-78.!The role of mRNA turnover in the regulation of tristetraprolin#J Immunol 2004; 172(12): 7263-71.! Rnf141; Znf230 WWWWATTTAWWWW 158-850 3826-3838 Regulation of tristetraprolin during differentiation of 3T3-L1#FEBS J 2007; 274(3): 867-78.!The role of mRNA turnover in the regulation of tristetraprolin#J Immunol 2004; 172(12): 7263-71.!

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT012860 mmu-miR-34b-5p Mus musculus Rnf141 67150 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT011436 mmu-miR-26a-5p Mus musculus Rnf141 67150 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT010685 mmu-miR-340-5p Mus musculus Rnf141 67150 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT008739 mmu-miR-425-5p Mus musculus Rnf141 67150 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000240 mmu-miR-207 67150 Rnf141 cucccuccucucggUCCUCUUCg |||||||| cacuguugucguagAGGAGAAGg 2 10 41 63 [mm9:7:117960151-117960173:-] 0.5422 145 7 -14.39 -0.4378 MIMAT0004635 mmu-miR-92a* 67150 Rnf141 caUUACGGUGGUUAGGGGUGGa ||| :|| : |:|||||| gaAAUAUCAGU-UUUCCCACCc 2 21 86 106 [mm9:7:117960108-117960128:-] 0.5736 138 6 -20.05 -0.1108 MIMAT0002106 mmu-miR-465a-5p 67150 Rnf141 aguguaguCACGGUAAG-AUUUAu || ||:||| ||||| ucugguauGUCCCGUUCUUAAAUa 2 16 122 145 [mm9:7:117960069-117960092:-] 0.6044 127 0 -13.04 -1.1517 MIMAT0004820 mmu-miR-744* 67150 Rnf141 uccaaCUCCAAU--CACCGU-UGUc |:|| || |||||| ||| aagggGGGGAUAUUGUGGCACACAc 2 18 60 84 [mm9:7:117960130-117960154:-] 0.5429 124 0 -19.74 -0.6244 MIMAT0003495 mmu-miR-705 67150 Rnf141 acGGGUGGGGUGGAGGGUGg |::| : | ||||||: uuCUUAAAUAAACUCCCAUg 2 19 136 155 [mm9:7:117960059-117960078:-] 0.6044 130 0 -14.70 -0.1952 MIMAT0003500 mmu-miR-710 67150 Rnf141 gaguugagaggggUUCUGAAcc ||||||| ------cuuggggAAGACUUuc 3 10 1 16 [mm9:7:117960198-117960213:-] 0.6245 125 0 -6.71 -0.1230 MIMAT0004839 mmu-miR-743b-5p 67150 Rnf141 acuacCUGUGGUCAGACUUGu | ::::| ||||||| uuucuGUUGUUAUUCUGAACu 2 17 13 33 [mm9:7:117960181-117960201:-] 0.6245 148 7 -11.08 -1.0969 MIMAT0004871 mmu-miR-465b-5p 67150 Rnf141 guCUAGUCGUGGUAAG-AUUUAu |:| |: ||:||| ||||| cuGGUAUGUCCCGUUCUUAAAUa 2 21 123 145 [mm9:7:117960069-117960091:-] 0.6044 128 0 -13.97 -1.1556 MIMAT0004873 mmu-miR-465c-5p 67150 Rnf141 guCUAGUCGCGGUAAG-AUUUAu |:| |: ||:||| ||||| cuGGUAUGUCCCGUUCUUAAAUa 2 21 123 145 [mm9:7:117960069-117960091:-] 0.6044 128 0 -13.97 -1.1536 MIMAT0004930 mmu-miR-466d-5p 67150 Rnf141 guaCAUGU-ACAUGCGUGUGUGu | |:| |||: |||||||| gggGGAUAUUGUG-GCACACACa 2 20 64 85 [mm9:7:117960129-117960150:-] 0.5429 156 7 -19.83 -0.6653 MIMAT0005845 mmu-miR-466k 67150 Rnf141 aguguaCAUGU-ACA-UGUGUGUGu | |:| ||| :||||||| agggggGGAUAUUGUGGCACACACa 2 18 61 85 [mm9:7:117960129-117960153:-] 0.5429 151 7 -17.09 -0.6616 MIMAT0009402 mmu-miR-1938 67150 Rnf141 cuGGCUUGAUGUUC---AGGGUGGc | ||| ||: || ||||||| caCAGAAAUAUCAGUUUUCCCACCc 2 21 82 106 [mm9:7:117960108-117960132:-] 0.5736 155 7 -16.05 -1.0424 MIMAT0009459 mmu-miR-1982* 67150 Rnf141 ggagggguccuggGAGGGUu |||||| guucuuaaauaaaCUCCCAu 2 8 135 154 [mm9:7:117960060-117960079:-] 0.6044 120 6 -14.85 -0.1690 MIMAT0000677 mmu-miR-7a 67150 Rnf141 ugUUGUUUUAGUGAUCAGAAGGu ||:||| || | ||||||| uaAAUAAACUCCCAUGUCUUCCa 2 22 140 162 [mm9:7:117960052-117960074:-] 0.6044 169 7 -17.20 -1.1572 MIMAT0000678 mmu-miR-7b 67150 Rnf141 ugUUGUUUUAGUGUUCAGAAGGu ||:||| || || ||||||| uaAAUAAACUCCCAUGUCUUCCa 2 22 140 162 [mm9:7:117960052-117960074:-] 0.6044 177 7 -19.37 -1.1572

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G066770 Rnf141 Mus musculus 67150

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf141 mmu-miR-338-5p beg:63 end:76 pic:3' GTGAGTCGTGGTCCTATAACAA 5'& .||||||||| &5' -----------GGGATATTGT- 3' Rnf141 mmu-miR-466d-5p beg:70 end:86 pic:3' GTACATGTACATGCGTGTGTGT 5'& |||. ||||||||| &5' --------TGTG-GCACACACA 3' Rnf141 mmu-miR-146a beg:79 end:101 pic:3' TTGGGTACCTTA--AGTCAAGAGT 5'& || ||| ||||||.|| &5' ----CACAGAAATATCAGTTTTC- 3' Rnf141 mmu-miR-1907 beg:6 end:24 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& ||| .||||.||.| &5' ------AGACTTTCTGTTGTT- 3' Rnf141 mmu-miR-1929 beg:40 end:62 pic:3' GAGACGAGA-TATTTCAGGATCTT 5'& |||.| | .||.|| |||| &5' --CTGTTGTCGTAGAGG---AGAA 3' Rnf141 mmu-miR-1938 beg:96 end:106 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& ||||||| &5' --------------TCCCACC- 3' Rnf141 mmu-miR-193star beg:0 end:15 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& |||| | .|||||.. &5' ----CTTG---GGGAAGACTT- 3' Rnf141 mmu-miR-1940 beg:145 end:164 pic:3' TTGACGAGGTGGAAGAGTCAGGAGGTA 5'& |||| | |||.||||| &5' -----CTCC-CAT-----GTCTTCCAT 3' Rnf141 mmu-miR-1944 beg:72 end:88 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& ||.|| || |||||| &5' ----------TGGCA--CA-CACAGA- 3' Rnf141 mmu-miR-1949 beg:113 end:131 pic:3' TTGATACGACTGTAGGACCATATC 5'& |||| ||.|||||||. &5' -----TGCT---ATTCTGGTATG- 3' Rnf141 mmu-miR-1953 beg:82 end:104 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& ||||| || .||||||| &5' CAGAAATATCAG--TTTTCCCA 3' Rnf141 mmu-miR-1967 beg:87 end:109 pic:3' CGTAGA-AGAGGGGTCCTAGGAGT 5'& .||| |.|.|||| |||| &5' -TATCAGTTTTCCCAC---CCTC- 3' Rnf141 mmu-miR-196astar beg:41 end:52 pic:3' AGTCCGTCAAAGAACAACGGCT 5'& |||||.|| &5' -------------TGTTGTCG- 3' Rnf141 mmu-miR-200cstar beg:32 end:58 pic:3' GGTT--TGTGACGACC-CATTCTGC 5'& ||| ||||||.|| || ||| | &5' -CAAATACACTGTTGTCGT-AGAGG 3' Rnf141 mmu-miR-2135 beg:0 end:16 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& |.|| |||||.|. &5' ---TTGGGG--AAGACTTT- 3' Rnf141 mmu-miR-218 beg:61 end:82 pic:3' TGTACCAATCTAGT---TCGTGTT 5'& || .||| .||||| &5' ----GGGGGGATATTGTGGCACA- 3' Rnf141 mmu-miR-3099 beg:95 end:120 pic:3' AGGGGTTGGAGAG--AGATCGGAT 5'& |.|||| |||||. |.| ||. &5' TTCCCACCCTCTTATTTTTGCT-- 3' Rnf141 mmu-miR-343 beg:48 end:68 pic:3' AGACCCGTGTA--CTTCCCTCT 5'& |.| | ||||||.|. &5' -----GTAGAGGAGAAGGGGGG 3' Rnf141 mmu-miR-34a beg:27 end:48 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& |||.| | || ||||||.. &5' --AACTA-CAAATACACTGTT- 3' Rnf141 mmu-miR-493 beg:0 end:17 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& |.||| . |||.||| &5' CTTGGGGAA------GACTTTC- 3' Rnf141 mmu-miR-669n beg:75 end:88 pic:3' TGTGTGTAGGTGTGTGTTTA 5'& ||||||||.| &5' ---------CACACACAGA- 3' Rnf141 mmu-miR-672 beg:75 end:100 pic:3' AGTGTGTGTCA-TGTGGTTGGAGT 5'& ||||||||| |.|.||. |. &5' -CACACACAGAAATATCAGTTTT- 3' Rnf141 mmu-miR-684 beg:0 end:14 pic:3' AACTGAACTTCCCTTTTGA 5'& |||| |||||.||| &5' ----CTTG--GGGAAGACT 3' Rnf141 mmu-miR-7a beg:140 end:163 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& ||.||| || |||||||| &5' --AATAAACTCCCATGTCTTCCA 3' Rnf141 mmu-miR-7a beg:81 end:102 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& |||.|| .|. |||.|||| &5' ---ACAGAAATATCAGTTTTCC- 3' Rnf141 mmu-miR-7b beg:140 end:163 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& ||.||| || || |||||||| &5' --AATAAACTCCCATGTCTTCCA 3' Rnf141 mmu-miR-7b beg:76 end:102 pic:3' TGT-TGTTTTAGTGTTCAGAAGGT 5'& ||| |||.|| .|. |||.|||| &5' ACACACAGAAATATCAGTTTTCC- 3' Rnf141 mmu-miR-872 beg:24 end:45 pic:3' GGACTTGATTGTTCAT-TGGAA 5'& ||||||| |||| || ||. &5' -CTGAACT-ACAAATACACT-- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf141 RAID00512155 mmu-miR-34b-5p miRNA MIMAT0000382 Rnf141 mRNA 67150 NGS (Next Generation Sequencing) 0.5483 Rnf141 RAID00852388 mmu-miR-21b miRNA MIMAT0025121 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID00872333 mmu-miR-137-3p miRNA MIMAT0000149 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID01275752 mmu-miR-320-3p miRNA MIMAT0000666 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID01338119 mmu-miR-27b-3p miRNA MIMAT0000126 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID01634855 mmu-miR-26a-5p miRNA MIMAT0000533 Rnf141 mRNA 67150 NGS (Next Generation Sequencing) 0.5483 Rnf141 RAID01838001 mmu-miR-7b-5p miRNA MIMAT0000678 Rnf141 mRNA 67150 Prediction 0.2202 Rnf141 RAID01874274 mmu-miR-335-5p miRNA MIMAT0000766 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID02211818 mmu-miR-1938 miRNA MIMAT0009402 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID02248191 mmu-miR-6539 miRNA MIMAT0025584 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID02280171 mmu-miR-466d-5p miRNA MIMAT0004930 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID02341838 mmu-miR-466i-5p miRNA MIMAT0017325 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID02704140 mmu-miR-6408 miRNA MIMAT0025161 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID02949575 mmu-miR-124-3p miRNA MIMAT0000134 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID03336725 mmu-miR-340-5p miRNA MIMAT0004651 Rnf141 mRNA 67150 NGS (Next Generation Sequencing) 0.5483 Rnf141 RAID03381767 mmu-miR-425-5p miRNA MIMAT0004750 Rnf141 mRNA 67150 NGS (Next Generation Sequencing) 0.5483 Rnf141 RAID03886478 mmu-miR-92b-3p miRNA MIMAT0004899 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID03970097 mmu-miR-7a-5p miRNA MIMAT0000677 Rnf141 mRNA 67150 Prediction 0.1828 Rnf141 RAID04021650 mmu-miR-466k miRNA MIMAT0005845 Rnf141 mRNA 67150 Prediction 0.1828