DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT011755 mmu-miR-15a-5p Mus musculus Rnf40 233900 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0003473 mmu-miR-133a* 233900 Rnf40 uaaaccAAGGUAAAAU-GGUCg ||:: ||||| |||| ggcauuUUUUUUUUUAGCCAGa 2 16 549 570 [mm9:7:134746706-134746727:+] 0.5390 123 0 -9.43 -0.9900 MIMAT0004534 mmu-miR-145* 233900 Rnf40 guUCUUGUCAUAA--A---GGUCCUUa |||| :| ||| | ||||||| cuAGAAGGGAAUUCCUCCACCAGGAAa 2 21 295 321 [mm9:7:134746452-134746478:+] 0.5202 150 7 -16.10 -0.3728 MIMAT0000240 mmu-miR-207 233900 Rnf40 cucCCUCCUCUCGGUCC-UCUUCg | ||| ||||| ||||| cuuGCAGGCAUUCCAGGUAGAAGa 2 21 728 751 [mm9:7:134746885-134746908:+] 0.5665 124 0 -19.51 -0.2439 MIMAT0000376 mmu-miR-298 233900 Rnf40 cccuuCUUGUCGGGAGGAGACGg |:|| | ||||||| cuuuuGGACUCACAGCCUCUGCu 2 19 867 889 [mm9:7:134747024-134747046:+] 0.5372 146 7 -20.57 -0.2032 MIMAT0004629 mmu-miR-22* 233900 Rnf40 auuUCGAACG-GUGACUUCU-UGa ||||| : :::|||||| || uguAGCUUUUGUGUUGAAGACACu 2 20 468 491 [mm9:7:134746625-134746648:+] 0.4940 126 0 -15.85 -0.1271 MIMAT0002104 mmu-miR-463* 233900 Rnf40 uaCUACCUGUUGUUUAA-UCCAu |:|| :|| | ||| |||| ugGGUGUGCACCCUAUUCAGGUc 2 21 494 516 [mm9:7:134746651-134746673:+] 0.4912 124 0 -12.50 -0.1269 MIMAT0004788 mmu-miR-20b* 233900 Rnf40 gauCUUCACGAGUGU-GACGUCa ||| || ||| | |||||| ccuGAA-UG-UCAGAUCUGCAGc 2 20 183 203 [mm9:7:134746340-134746360:+] 0.5383 123 6 -15.88 -0.2231 MIMAT0003731 mmu-miR-671-5p 233900 Rnf40 gaGGUCGGGGAGGUCCCG-AAGGa |:||| |:| || ||| |||| auCUAGCACUUGCA-GGCAUUCCa 2 22 720 742 [mm9:7:134746877-134746899:+] 0.5665 131 0 -23.62 -0.4049 MIMAT0003892 mmu-miR-762 233900 Rnf40 cgagacAGG-GCCGGGGUCGGGg ||| :| |||||||| ucagacUCCAUGAGCCCAGCCCc 2 17 86 108 [mm9:7:134746243-134746265:+] 0.5424 151 7 -27.34 -0.1839 MIMAT0014815 mmu-miR-3099* 233900 Rnf40 guucccGACCUU----CCUUCGACc ||| || |||||||| auccuaCUGUAACCUUGGAAGCUGa 2 16 228 252 [mm9:7:134746385-134746409:+] 0.5272 146 7 -15.64 -0.4139 MIMAT0014816 mmu-miR-3099 233900 Rnf40 agGGGUUGGAGAGAGAUCGGAu |||: ||| ||||||| ugCCCGUGCUCCAGCUAGCCUa 2 21 756 777 [mm9:7:134746913-134746934:+] 0.5121 156 7 -26.21 -0.2433 MIMAT0004823 mmu-miR-666-3p 233900 Rnf40 ucguccgcUAGU-GCGACGUCGg :||| ||||||| uccugaauGUCAGAUCUGCAGCc 2 15 182 204 [mm9:7:134746339-134746361:+] 0.5383 141 7 -19.36 -0.3267 MIMAT0003898 mmu-miR-760 233900 Rnf40 agGGGUGUCUG-GGU-CUCGGc |:: ||||| ||| ||||| ccCUUUCAGACUCCAUGAGCCc 2 19 81 102 [mm9:7:134746238-134746259:+] 0.5424 129 0 -26.96 -0.1524 MIMAT0004825 mmu-miR-423-5p 233900 Rnf40 uuUCAGAGCGAGAGACGG-GGAGu :||| | | ||||| |||| caGGUCAGGGACACUGCCACCUCa 2 22 511 534 [mm9:7:134746668-134746691:+] 0.4912 125 0 -23.10 -0.3611 MIMAT0003468 mmu-miR-689 233900 Rnf40 ccugGGGCGGC-UCGCCCCUGc :|:|| | ||||||| cagaUCUGCAGCCUCGGGGACu 2 18 192 213 [mm9:7:134746349-134746370:+] 0.5090 144 7 -24.19 -0.1405 MIMAT0004841 mmu-miR-871 233900 Rnf40 guACUGACCGU-GAUUA-GACUUAu ||| || || || | |||||| gcUGAGUGCCAUCUUUUCCUGAAUg 2 22 166 190 [mm9:7:134746323-134746347:+] 0.5676 128 6 -15.40 -0.4346 MIMAT0004848 mmu-miR-883a-5p 233900 Rnf40 cauUGACGAU-GAAGAGAGU-CGu ||| :|| | |:||||| || uccACU-UUACCCUUUCUCACGCa 2 20 601 623 [mm9:7:134746758-134746780:+] 0.5390 120 0 -15.80 -0.5726 MIMAT0004856 mmu-miR-105 233900 Rnf40 uggUGUUCG-UAGACUCGUGAACc | || | |||| |||||||| ggaAGAAACAAUCU-AGCACUUGc 2 21 710 732 [mm9:7:134746867-134746889:+] 0.5665 161 7 -16.75 -0.4594 MIMAT0004882 mmu-miR-466f-3p 233900 Rnf40 cacacaUACACACACACAUAc | |||| ||||||| cucuagAGGUGU-UGUGUAUg 2 16 888 907 [mm9:7:134747045-134747064:+] 0.5372 153 7 -16.72 -0.1883 MIMAT0004891 mmu-miR-509-3p 233900 Rnf40 gguAAUGUCUUUACAGU-UAGu || | :||||||| ||| ucuUUUCCUGAAUGUCAGAUCu 2 19 177 198 [mm9:7:134746334-134746355:+] 0.5383 126 0 -10.02 -0.1009 MIMAT0004934 mmu-miR-872 233900 Rnf40 ggacuugauuguuCAUUGGAa ||||||| acagcauccuacuGUAACCUu 2 9 223 243 [mm9:7:134746380-134746400:+] 0.5272 140 7 -12.88 -0.3451 MIMAT0007863 mmu-miR-1902 233900 Rnf40 uuCAGUACGGAUGAC-GUGGAGa |||| | |||| |||||| agGUCAGGGACACUGCCACCUCa 2 21 512 534 [mm9:7:134746669-134746691:+] 0.4912 132 6 -21.82 -0.3670 MIMAT0007863 mmu-miR-1902 233900 Rnf40 uucagUACGGAU--GACGU-GGAGa |||:| : ||||| |||| ccugaAUGUCAGAUCUGCAGCCUCg 2 18 183 207 [mm9:7:134746340-134746364:+] 0.5383 120 0 -18.44 -0.1458 MIMAT0007867 mmu-miR-1895 233900 Rnf40 aggaggAGCAGGAGGAGCCCCc || | |||||||| gucagaUCUGCAGCCUCGGGGa 2 17 190 211 [mm9:7:134746347-134746368:+] 0.5090 148 7 -23.83 -0.1040 MIMAT0009397 mmu-miR-1933-3p 233900 Rnf40 uaucagugugacUACCAGGACc | ||||||| uccugccuaagcAGGGUCCUGa 2 11 784 805 [mm9:7:134746941-134746962:+] 0.4839 142 7 -16.80 -0.1745 MIMAT0009404 mmu-miR-1940 233900 Rnf40 uugacgagguggaagagUCAGGAGGUa | ||||||| cuuaccccuagaagggaAUUCCUCCAc 2 11 288 314 [mm9:7:134746445-134746471:+] 0.5202 142 7 -18.29 -0.1988 MIMAT0009408 mmu-miR-1943 233900 Rnf40 agguccACGGGUCUAGGAGGGAa || || | ||||||| gggcaaUGGCCCCAACCUCCCUu 2 18 63 85 [mm9:7:134746220-134746242:+] 0.5424 153 7 -27.19 -0.3261 MIMAT0009425 mmu-miR-1954 233900 Rnf40 uuGUCCCAGAGU-GAGACGUCa | | | ||| ||||||| ucCUGAAUGUCAGAUCUGCAGc 2 20 182 203 [mm9:7:134746339-134746360:+] 0.5383 146 7 -14.11 -0.2240 MIMAT0009431 mmu-miR-1958 233900 Rnf40 ugaaugacGAAGGUGAAAGGAu || |: ||||||| uuuccaauCUCCUCCUUUCCUc 2 15 574 595 [mm9:7:134746731-134746752:+] 0.5390 150 7 -12.64 -0.2216 MIMAT0009435 mmu-miR-1962 233900 Rnf40 uacACAGGGU-CACGGUCGGAGa |||| | || ||||||| gaaUGUCAGAUCUG-CAGCCUCg 2 20 186 207 [mm9:7:134746343-134746364:+] 0.5383 148 7 -17.79 -0.1083 MIMAT0009435 mmu-miR-1962 233900 Rnf40 uacACAGGGUCACGGUCGGAGa | |: | | ||||||| agcUUUUGGACUCACAGCCUCu 2 20 865 886 [mm9:7:134747022-134747043:+] 0.5372 143 7 -17.68 -0.4165 MIMAT0009455 mmu-miR-1983 233900 Rnf40 ucuUUUGUACGAGGUCCA-CUc |::||| ||||||| || ugcAGGCAU--UCCAGGUAGAa 2 19 730 749 [mm9:7:134746887-134746906:+] 0.5665 123 0 -17.17 -0.2275 MIMAT0009459 mmu-miR-1982* 233900 Rnf40 ggAGGGGUCCUGGGAGGGUu |||:| :||||||| ucUCCUC-CUUUCCUCCCAa 2 19 581 599 [mm9:7:134746738-134746756:+] 0.5390 144 7 -28.10 -0.9988 MIMAT0012771 mmu-miR-432 233900 Rnf40 gacGGGUGACUAGAUGA-GGUUCu :|: || |:| || ||||| caaUCUCCUCCUUUCCUCCCAAGu 2 21 578 601 [mm9:7:134746735-134746758:+] 0.5390 120 0 -14.28 -0.2525 MIMAT0012774 mmu-miR-664 233900 Rnf40 auCCGACCCCUCAU-UUACUUAu ||||| | |: |||||| ugGGCUGCUAAUUGUUAUGAAUa 2 21 906 928 [mm9:7:134747063-134747085:+] 0.5372 123 6 -16.12 -0.1679 MIMAT0000135 mmu-miR-125a-5p 233900 Rnf40 aguguccaauuucccaGAGUCCCu ||||||| --------accugaaaCUCAGGGg 2 9 1 16 [mm9:7:134746158-134746173:+] 0.5814 140 7 -16.11 -0.3328 MIMAT0000136 mmu-miR-125b-5p 233900 Rnf40 aguguucaaucccaGAGUCCCu ||||||| ------accugaaaCUCAGGGg 2 9 1 16 [mm9:7:134746158-134746173:+] 0.5814 140 7 -16.11 -0.3383 MIMAT0000210 mmu-miR-181a 233900 Rnf40 ugaguggcugucgcaACUUACAa ||||||| agugccaucuuuuccUGAAUGUc 2 9 170 192 [mm9:7:134746327-134746349:+] 0.5383 140 7 -9.46 -0.1972 MIMAT0000212 mmu-miR-183 233900 Rnf40 ucacuuaagauggUCACGGUAu |||||||| gucacccaagcugAGUGCCAUc 2 10 157 178 [mm9:7:134746314-134746335:+] 0.5676 145 7 -13.88 -0.3381 MIMAT0000368 mmu-miR-291a-3p 233900 Rnf40 cgUGUGUUUCACCUUCGUGAAa | |||| | ||||||| agAAACAAUCU---AGCACUUg 2 21 713 731 [mm9:7:134746870-134746888:+] 0.5665 144 7 -10.54 -0.2726 MIMAT0000372 mmu-miR-294 233900 Rnf40 ugugUGUUU-UCCCUUCGUGAAa | ||| | ||||||| gggaAGAAACAAUCUAGCACUUg 2 19 709 731 [mm9:7:134746866-134746888:+] 0.5665 141 7 -11.60 -0.2915 MIMAT0000373 mmu-miR-295 233900 Rnf40 ucugagUUUUCAU-CAUCGUGAAa :||| | |||||||| agggaaGAAACAAUCUAGCACUUg 2 18 708 731 [mm9:7:134746865-134746888:+] 0.5665 148 7 -12.36 -0.2915 MIMAT0004576 mmu-miR-296-3p 233900 Rnf40 ccucucggagGUGGGUUGGGAg :|||||||||| augaauaaaaUACCCAACCCUa 2 13 922 943 [mm9:7:134747079-134747100:+] 0.5372 156 7 -22.69 -0.9198 MIMAT0000380 mmu-miR-302a 233900 Rnf40 aguggUUUUGUACCUUCGUGAAu :||||| ||||||| gggaaGAAACAAUCUAGCACUUg 2 19 709 731 [mm9:7:134746866-134746888:+] 0.5665 154 7 -15.04 -0.2840 MIMAT0000381 mmu-miR-34c 233900 Rnf40 cgUUAGUCGA-UUGAUGUGACGGa | |||| | |: |||||||| cuAUUCAGGUCAGGGACACUGCCa 2 22 506 529 [mm9:7:134746663-134746686:+] 0.4912 160 7 -19.81 -0.2275 MIMAT0000382 mmu-miR-34b-5p 233900 Rnf40 ugUUAGUCGA-UUAAUGUGACGGa | |||| | |: |||||||| cuAUUCAGGUCAGGGACACUGCCa 2 22 506 529 [mm9:7:134746663-134746686:+] 0.4912 160 7 -19.98 -0.2275 MIMAT0000542 mmu-miR-34a 233900 Rnf40 ugUUGGUC--GAUUCUGUGACGGu | :||| | ::||||||||| cuAUUCAGGUCAGGGACACUGCCa 2 21 506 529 [mm9:7:134746663-134746686:+] 0.4912 159 7 -25.23 -0.2254 MIMAT0000609 mmu-miR-351 233900 Rnf40 guccgaguuucccgagGAGUCCCu ||||||| --------accugaaaCUCAGGGg 2 9 1 16 [mm9:7:134746158-134746173:+] 0.5814 140 7 -15.98 -0.3411 MIMAT0000673 mmu-miR-181b 233900 Rnf40 ugGGUGGCUGUCGUUACUUACAa |||:| : | ||||||| ugCCAUCUUUUCC--UGAAUGUc 2 22 172 192 [mm9:7:134746329-134746349:+] 0.5383 142 7 -13.21 -0.1834 MIMAT0000674 mmu-miR-181c 233900 Rnf40 ugaguggcuguccaACUUACAa ||||||| gugccaucuuuuccUGAAUGUc 2 9 171 192 [mm9:7:134746328-134746349:+] 0.5383 140 7 -10.02 -0.1990 MIMAT0000711 mmu-miR-365 233900 Rnf40 uauuccuaaAAAUCCCCGUAAu || ||||||||| auggucugaUUCAGGGGCAUUu 2 14 534 555 [mm9:7:134746691-134746712:+] 0.5151 157 7 -17.36 -0.4025 MIMAT0000741 mmu-miR-377 233900 Rnf40 uguuuuCAACGGAAACAC-ACUa || ||:|||||| ||| ccugguGUAGCUUUUGUGUUGAa 2 17 463 485 [mm9:7:134746620-134746642:+] 0.4954 132 0 -14.73 -0.5268 MIMAT0001542 mmu-miR-449a 233900 Rnf40 ugGUCGAUUGUUAUGUGACGGu ||| | | :: |||||||| uuCAGGUCA-GGGACACUGCCa 2 21 509 529 [mm9:7:134746666-134746686:+] 0.4912 154 7 -23.32 -0.2316 MIMAT0003128 mmu-miR-485 233900 Rnf40 cuUA-AGUAGUGCCGGUCGGAGa || ||| | | ||||||| gaAUGUCAGAUCUG-CAGCCUCg 2 21 186 207 [mm9:7:134746343-134746364:+] 0.5383 145 7 -15.90 -0.1072 MIMAT0003128 mmu-miR-485 233900 Rnf40 cuuAAGUAGUGCCGGUCGGAGa ||: || ||||||| agcUUUUGGACUCACAGCCUCu 2 20 865 886 [mm9:7:134747022-134747043:+] 0.5372 143 7 -18.53 -0.4165 MIMAT0003374 mmu-miR-302b 233900 Rnf40 gaugaUUUUGUACCUUCGUGAAu :||||| ||||||| gggaaGAAACAAUCUAGCACUUg 2 19 709 731 [mm9:7:134746866-134746888:+] 0.5665 154 7 -15.17 -0.2840 MIMAT0003377 mmu-miR-302d 233900 Rnf40 ugugagUUUGUACCUUCGUGAAu ||||| ||||||| gggaagAAACAAUCUAGCACUUg 2 18 709 731 [mm9:7:134746866-134746888:+] 0.5665 153 7 -14.41 -0.2840 MIMAT0003460 mmu-miR-449c 233900 Rnf40 ggucgaucGUUAC-GUGACGGa ||: | ||||||| auucagguCAGGGACACUGCCa 2 14 508 529 [mm9:7:134746665-134746686:+] 0.4912 144 7 -18.05 -0.2316 MIMAT0003486 mmu-miR-491 233900 Rnf40 ggaGUACCUUCCC--AAGG-GGUGa | | |||||| |||| |||| accCCUAGAAGGGAAUUCCUCCACc 2 20 291 315 [mm9:7:134746448-134746472:+] 0.5202 130 0 -24.46 -0.3185 MIMAT0004324 mmu-miR-181d 233900 Rnf40 ugGGUGGCUGUUGUUACUUACAa |||:| : | ||||||| ugCCAUCUUUUCC--UGAAUGUc 2 22 172 192 [mm9:7:134746329-134746349:+] 0.5383 142 7 -13.21 -0.1834 MIMAT0005447 mmu-miR-449b 233900 Rnf40 cgGUCGA-UUGUUGUGACGGa ||| | |: :|||||||| uuCAGGUCAGGGACACUGCCa 2 19 509 529 [mm9:7:134746666-134746686:+] 0.4912 157 7 -21.43 -0.2275

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G031366 Rnf40 Mus musculus 233900

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf40 mmu-miR-129-3p beg:314 end:327 pic:3' TACGAAAAACCCCATTCCCGAA 5'& || ||||||| &5' -----------GGAAAGGGCT- 3' Rnf40 mmu-miR-10b beg:807 end:822 pic:3' GTGTTTAAGCCAAGATGTCCCAT 5'& ||| ||||||| &5' --------CGGAG--ACAGGGT- 3' Rnf40 mmu-miR-302d beg:712 end:732 pic:3' TGTGAGTTTGTACCTTCGTGAAT 5'& ||||| |||||||. &5' ------AAACAATCTAGCACTTG 3' Rnf40 mmu-miR-294 beg:714 end:731 pic:3' TGTGTGTTTTCCCTTCGTGAAA 5'& |||| ||||||| &5' ----ACAATCT---AGCACTT- 3' Rnf40 mmu-miR-34c beg:510 end:529 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& ..|||| |||||||| &5' --GGTCAGGG----ACACTGCC- 3' Rnf40 mmu-miR-485 beg:188 end:207 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& ||| | | ||||||| &5' ----TCAGATCTG-CAGCCTC- 3' Rnf40 mmu-miR-1962 beg:868 end:887 pic:3' TACACAGGGTCACGGTCGGAGA 5'& || |. |||||||| &5' ---TGGACTCA---CAGCCTCT 3' Rnf40 mmu-miR-485 beg:869 end:887 pic:3' CTTAAGTAGTGCCG----GTCGGAGA 5'& || |||||||| &5' -----------GGACTCACAGCCTCT 3' Rnf40 mmu-miR-504 beg:808 end:824 pic:3' CTATCTCACGTCTGGTCCCAGA 5'& | ||| |||||||| &5' --------GGAGA-CAGGGTCT 3' Rnf40 mmu-miR-762 beg:89 end:109 pic:3' CGAGACAGG-GCCGGGGTCGGGG 5'& ||| .| ||||||||| &5' ------TCCATGAGCCCAGCCCC 3' Rnf40 mmu-miR-145star beg:311 end:321 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||||||| &5' --------------CCAGGAA- 3' Rnf40 mmu-miR-331-3p beg:55 end:67 pic:3' AAGATCCTATCCGGGTCCCCG 5'& ||||||||| &5' ------------CCCAGGGGC 3' Rnf40 mmu-miR-1943 beg:68 end:86 pic:3' AGGTCCACGGGTCTAGGAGGGAA 5'& |||| |||||||| &5' -------GCCCCAA-CCTCCCTT 3' Rnf40 mmu-miR-125a-5p beg:6 end:17 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& |||||||. &5' ----------------CTCAGGGG 3' Rnf40 mmu-miR-125b-5p beg:6 end:17 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& |||||||. &5' --------------CTCAGGGG 3' Rnf40 mmu-miR-674 beg:334 end:354 pic:3' ATGTGGTGAGGGTAGAGTCACG 5'& | | | |||||||| &5' ----CTGCA-CAAGCTCAGTGC 3' Rnf40 mmu-miR-1895 beg:193 end:211 pic:3' AGGAGGAGCAGGAGGAGCCCCC 5'& ||. | |||||||| &5' ---TCTG---CAGCCTCGGGG- 3' Rnf40 mmu-miR-340-3p beg:823 end:842 pic:3' CGATATTTCATTGA--CTCTGCCT 5'& |||. |.|| ||||||| &5' GCTGG-----AGCTGGGAGACGG- 3' Rnf40 mmu-miR-105 beg:714 end:732 pic:3' TGGTGTTCGTAGACTCGTGAACC 5'& ||| |||| |||||||| &5' ---ACA---ATCT-AGCACTTG- 3' Rnf40 mmu-miR-365 beg:538 end:555 pic:3' TATTCCTAAAAATCCCCGTAAT 5'& |||| ||||||||| &5' -----GATTC--AGGGGCATT- 3' Rnf40 mmu-miR-1933-3p beg:369 end:388 pic:3' TATCAGTGTGACTACCAGGACC 5'& |||||.|| |||||||| &5' ----TCACATTG--GGTCCTGG 3' Rnf40 mmu-miR-1933-3p beg:795 end:805 pic:3' TATCAGTGTGACTACCAGGACC 5'& ||||||| &5' --------------GGTCCTG- 3' Rnf40 mmu-miR-183 beg:163 end:178 pic:3' TCACTTAAGATGG-TCACGGTAT 5'& .|. |||||||| &5' ----------GCTGAGTGCCAT- 3' Rnf40 mcmv-miR-m01-3 beg:387 end:409 pic:3' AGCTCCGTTGTCAGCGAAGTGGC 5'& ||||| |.| |.|||||||. &5' -CGAGG-AGCC-TTGCTTCACT- 3' Rnf40 mcmv-miR-M23-1-3p beg:128 end:150 pic:3' CCGGAGCCCG-GCTGCGTCCTC 5'& |||. | ||. || .||||||| &5' GGCTACTGGTGCG-TGCAGGAG 3' Rnf40 mcmv-miR-M23-2 beg:40 end:62 pic:3' GG-CGAACTGGCTCCGGGGGTA 5'& || ||| || |||||| &5' CCAGCTCC-CCACT-CCCCCA- 3' Rnf40 mghv-miR-M1-7-5p beg:163 end:182 pic:3' TCCAATGGCGTGGAGGTGGAAA 5'& .|.| |||.|||| &5' -----GCTGAGTG-CCATCTTT 3' Rnf40 mghv-miR-M1-7-5p beg:592 end:609 pic:3' TCCAATGGCGTGGAGGTGGAAA 5'& || || |||||.|| &5' ------CC-CAAGTCCACTTT- 3' Rnf40 mghv-miR-M1-8 beg:153 end:175 pic:3' CTGGTTTGGGGGTC-ACTCACGA 5'& | | |||| || ||||||| &5' GGTC--ACCCA-AGCTGAGTGC- 3' Rnf40 mmu-let-7b beg:870 end:892 pic:3' TTGGTGTGTTGGATGATG-GAGT 5'& .||. ||||.||| ||.| || &5' GACT-CACAGCCT-CTGCTCT-- 3' Rnf40 mmu-miR-101a beg:219 end:239 pic:3' AAGTCAATAGTGTC-----ATGACAT 5'& ||||| ||||||| &5' ---------CACAGCATCCTACTGTA 3' Rnf40 mmu-miR-101b beg:221 end:239 pic:3' AAGTCGATAGTGTCATGACAT 5'& |||| ||| | ||||||| &5' --CAGC-ATC-C--TACTGTA 3' Rnf40 mmu-miR-106a beg:537 end:557 pic:3' GATGGACGTGACAATCGTGAAAC 5'& .||| .|||.||| &5' ---TCTGATTCAGGGGCATTTT- 3' Rnf40 mmu-miR-10a beg:807 end:820 pic:3' GTGTTTAAGCCTAGATGTCCCAT 5'& |||| ||||||| &5' --------CGGAG--ACAGGGT- 3' Rnf40 mmu-miR-1 beg:724 end:743 pic:3' TATGTATGAAGAAATGTAAGGT 5'& |||| .||||||| &5' ------ACTTGCAGGCATTCCA 3' Rnf40 mmu-miR-1186 beg:718 end:731 pic:3' GTACGGAAATTAAGGTCGTGAG 5'& ||.||||||. &5' ------------TCTAGCACTT 3' Rnf40 mmu-miR-1191 beg:123 end:145 pic:3' ATCCCGATGTATCATTC-TGAC 5'& |.||||||| |.||. | .| &5' TGGGGCTAC-TGGTGCGTGC-- 3' Rnf40 mmu-miR-1193 beg:671 end:682 pic:3' CTATCATTTTGCCCACTGGAT 5'& |||||.|| &5' ------------GGTGATCT- 3' Rnf40 mmu-miR-125a-5p beg:499 end:522 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& ||| ||| ||||||| &5' -CACCCTATTCAGG---TCAGGGA 3' Rnf40 mmu-miR-125b-3p beg:372 end:392 pic:3' TCGAGGGTT-CTC-GGATTGGGCA 5'& || |.| |||..|||| &5' ------CATTGGGTCCTGGCCCG- 3' Rnf40 mmu-miR-125b-5p beg:509 end:522 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& ||| ||||||| &5' ---------AGG---TCAGGGA 3' Rnf40 mmu-miR-1274a beg:347 end:369 pic:3' ACCGCGGACTTGTCCCTGGACT 5'& |.| |||| ||||||||||. &5' --GTG-CTGACCAGGGACCTGG 3' Rnf40 mmu-miR-127star beg:390 end:407 pic:3' TAGTCTCGGGAGACTCGAAGTC 5'& .|||||.| |||||| &5' ---GGAGCCTT----GCTTCA- 3' Rnf40 mmu-miR-133a beg:242 end:258 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& |||| ||||||| &5' ---------GAAGCTGACCAAA 3' Rnf40 mmu-miR-133b beg:242 end:258 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& |||| ||||||| &5' ---------GAAGCTGACCAAA 3' Rnf40 mmu-miR-142-3p beg:509 end:528 pic:3' AGGTATTTCA-TCCTTTGTGATGT 5'& |.|| ||| .|||||.| &5' ------AGGTCAGG-GACACTGC- 3' Rnf40 mmu-miR-144 beg:216 end:239 pic:3' TCATGTA--GTAGATATGACAT 5'& .||||| |||| ||||||| &5' GGTACACAGCATCC-TACTGTA 3' Rnf40 mmu-miR-145star beg:689 end:710 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& |.| .|| ||||||. &5' -AGGTGCAACTTG-CCAGGAG- 3' Rnf40 mmu-miR-150 beg:821 end:839 pic:3' GTGACCATGTTCCCAACCCTCT 5'& .|||| .| ||||||| &5' -GCTGGAGC------TGGGAGA 3' Rnf40 mmu-miR-150star beg:154 end:177 pic:3' GATAGGGGGTCCGGA-CATGGTC 5'& .|| |||| ||. ||.||| &5' --GTCACCCAAGCTGAGTGCCA- 3' Rnf40 mmu-miR-15a beg:895 end:916 pic:3' GTGTTTGGTAATACA----CGACGAT 5'& .||.||| ||||||| &5' --------GTTGTGTATGGGCTGCTA 3' Rnf40 mmu-miR-15b beg:893 end:916 pic:3' ACATTTGGTAC-TACACGACGAT 5'& ||. . || ||| ||||||| &5' -GTG--TTGTGTATGGGCTGCTA 3' Rnf40 mmu-miR-17star beg:839 end:850 pic:3' GATGTTCACGGGAGTGACGTCA 5'& |.|||||| &5' -------------CGCTGCAG- 3' Rnf40 mmu-miR-1892 beg:580 end:602 pic:3' TAGGAGGGAGGGCAGGGGTTTA 5'& ||||||.|.|| .|||||.| &5' -TCCTCCTTTCC--TCCCAAGT 3' Rnf40 mmu-miR-1927 beg:876 end:898 pic:3' AGTCAGGGATTGTAGGTCTCCAG 5'& ||| ||. .| ||.|||||| &5' -CAG-CCTCTGC-TCTAGAGGT- 3' Rnf40 mmu-miR-1929 beg:880 end:902 pic:3' GAGACGAGATATTTCAGGATCTT 5'& |||||||||| .|.|| .|. &5' CTCTGCTCTA-GAGGTGTTG--- 3' Rnf40 mmu-miR-1930 beg:681 end:695 pic:3' TGCGACGTCCATGATACCTCCA 5'& |.|.||||||| &5' -----------ATTGTGGAGGT 3' Rnf40 mmu-miR-1935 beg:869 end:890 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& .|| | ||||||||||. &5' --GGACTCA-CAGCCTCTGCT- 3' Rnf40 mmu-miR-1949 beg:454 end:473 pic:3' TTGATACGACTGTAGGACCATATC 5'& ||| .| ||||||.||| &5' -------CTG-TACCCTGGTGTAG 3' Rnf40 mmu-miR-195 beg:897 end:916 pic:3' CGGTTATAAAGACACGACGAT 5'& |.| || ||||||| &5' -----TGTGTATGGGCTGCTA 3' Rnf40 mmu-miR-1953 beg:650 end:667 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& |||| .|||||.. &5' ----AGCCCT---GCTTTCTT- 3' Rnf40 mmu-miR-1954 beg:187 end:203 pic:3' TTGTCCCAGAGTGAGACGTCA 5'& ||| ||||||| &5' ------GTCAGA-TCTGCAG- 3' Rnf40 mmu-miR-1956 beg:412 end:430 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& || | ||| |||||.| &5' ---GCC--C-CAGGCCTGGGC- 3' Rnf40 mmu-miR-1956 beg:349 end:372 pic:3' AGGCGACTGAGTCG--GGACCTGA 5'& .|||||| ||| |||||.|| &5' --TGCTGAC-CAGGGACCTGGGCT 3' Rnf40 mmu-miR-1962 beg:186 end:207 pic:3' TACACAGGGTC-ACGGTCGGAGA 5'& |||| || ||||||| &5' ---TGTCAGATCTG-CAGCCTC- 3' Rnf40 mmu-miR-1982star beg:579 end:600 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& ||||.| .|||||||| &5' -CTCCTCCTT-TCCTCCCAA 3' Rnf40 mmu-miR-201 beg:163 end:174 pic:3' TTCTTGTTACGGAATGACTCAT 5'& .||||||. &5' --------------GCTGAGTG 3' Rnf40 mmu-miR-204 beg:295 end:306 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& .||||||| &5' --------------GAAGGGAA 3' Rnf40 mmu-miR-204 beg:703 end:714 pic:3' TCCGTATCCTACTGTTTCCCTT 5'& ..|||||| &5' --------------GGAGGGAA 3' Rnf40 mmu-miR-206 beg:722 end:743 pic:3' GGTGTGTGAAGGAATGTAAGGT 5'& .||||| | .||||||| &5' ----GCACTTGCAGGCATTCCA 3' Rnf40 mmu-miR-207 beg:133 end:154 pic:3' CTCCCTCCTCTCG-GTCCTCTTCG 5'& || | |. |||||||.|. &5' ------GGTGCGTGCAGGAGAGGT 3' Rnf40 mmu-miR-20bstar beg:828 end:850 pic:3' GATCTTCACGAGTGTGACGTCA 5'& ||.|.|| | .|.|||||| &5' CTGGGAGA-CG-GCGCTGCAG- 3' Rnf40 mmu-miR-211 beg:692 end:714 pic:3' TCCGTTTCCTACTG-TTTCCCTT 5'& |||| || ..|||||| &5' --GCAACT--TGCCAGGAGGGAA 3' Rnf40 mmu-miR-2136 beg:320 end:336 pic:3' GTGTAGAGTC-AGTTGTGGGTC 5'& .| ||| |||||| &5' --------GGCTCACCACCCA- 3' Rnf40 mmu-miR-2145 beg:640 end:662 pic:3' TTGGTCCGGGC-TGGGACGA 5'& ||| ||||| .||||||| &5' -ACCTGGCCCTAGCCCTGCT 3' Rnf40 mmu-miR-2145 beg:770 end:790 pic:3' TTGGTCCGGGCTGGGACGA 5'& |.|| |.||.||||| &5' AGCCTACACTGATCCTGC- 3' Rnf40 mmu-miR-221 beg:458 end:475 pic:3' CTTTGGGTCGTCTGTTACATCGA 5'& |||| ...||||||| &5' ---ACCC------TGGTGTAGCT 3' Rnf40 mmu-miR-222 beg:452 end:475 pic:3' TGGGTCATCGGTCTACATCGA 5'& .|| ||| || |.||||||| &5' -TCCTGTACCCTGGTGTAGCT 3' Rnf40 mmu-miR-2861 beg:412 end:426 pic:3' GGCGGGCGGCGGTCCGGGG 5'& ||| |||||||. &5' ------GCC-CCAGGCCT- 3' Rnf40 mmu-miR-290-3p beg:533 end:557 pic:3' CCCGAATTTTGATCCGCCGTGAAA 5'& || |.| | ||| ||||.||| &5' -GGTCTGATTC-AGG-GGCATTTT 3' Rnf40 mmu-miR-292-3p beg:539 end:557 pic:3' TGTGAGTTTTGGACCGCCGTGAAA 5'& |.||| || ||||.||| &5' --ATTCA------GG-GGCATTTT 3' Rnf40 mmu-miR-295 beg:710 end:731 pic:3' TCTGAGTTTTCATCATCGTGAAA 5'& ||| ||| |||||||| &5' AGAAACAATC----TAGCACTT- 3' Rnf40 mmu-miR-296-3p beg:314 end:339 pic:3' CCT--CTCGGA-GGTGGGTTGGGAG 5'& ||| |.||. ||||||| |. &5' GGAAAGGGCTCACCACCCATCT--- 3' Rnf40 mmu-miR-302a beg:711 end:732 pic:3' AGTGGTTTTGTACCTTCGTGAAT 5'& .||||| |||||||. &5' -----GAAACAATCTAGCACTTG 3' Rnf40 mmu-miR-302b beg:711 end:732 pic:3' GATGATTTTGTACCTTCGTGAAT 5'& .||||| |||||||. &5' -----GAAACAATCTAGCACTTG 3' Rnf40 mmu-miR-3099 beg:755 end:778 pic:3' AGGGGTTGGAGAGAGATCGGAT 5'& |||. ||| |||||||| &5' --CCCGTGCTCCAGCTAGCCTA 3' Rnf40 mmu-miR-3099 beg:872 end:894 pic:3' AGGG-GTTGGAGA-GAGATCGGAT 5'& |.| ||.||||| |||||| &5' -CTCACAGCCTCTGCTCTAG---- 3' Rnf40 mmu-miR-3099star beg:231 end:252 pic:3' GTTCCCGACCTT----CCTTCGACC 5'& ||| |||||||| &5' ------CTGTAACCTTGGAAGCTG- 3' Rnf40 mmu-miR-30c-2star beg:584 end:599 pic:3' TCTCATTTGTCGGAA--GAGGGTC 5'& |||| |||||| &5' -----------CCTTTCCTCCCA- 3' Rnf40 mmu-miR-320 beg:459 end:478 pic:3' AGCGGGAGAGTTGGGTCGAAAA 5'& ||| . . .||||||| &5' ---CCC---TGGTGTAGCTTTT 3' Rnf40 mmu-miR-337-3p beg:241 end:253 pic:3' TCCGTAGTATATCC-TCGACTT 5'& || |||||| &5' ------------GGAAGCTGA- 3' Rnf40 mmu-miR-337-3p beg:814 end:834 pic:3' TCCGTAGTATATCCTCGACTT 5'& ||| .|| |||||||. &5' AGG-GTCTGCT-GGAGCTGG- 3' Rnf40 mmu-miR-339-5p beg:800 end:820 pic:3' GCACTCGAGGACCTCCTGTCCCT 5'& ||| | || ||| ||||||| &5' --TGAACGCC-GGA-GACAGGG- 3' Rnf40 mmu-miR-339-5p beg:415 end:435 pic:3' GCACTCGAGGACCT--CCTGTCCCT 5'& || || ||.|||||| &5' --------CCAGGCCTGGGCAGGGA 3' Rnf40 mmu-miR-342-5p beg:210 end:233 pic:3' GAGTTAGTGTCTA----TCGTGGGGA 5'& || |||.| ||||.||. &5' -----TCCCAGGTACACAGCATCCT- 3' Rnf40 mmu-miR-3470b beg:876 end:899 pic:3' GGTCGG--ACCAGATGTCTCACT 5'& ||||| || |||| || ||| &5' -CAGCCTCTGCTCTAGAG-GTG- 3' Rnf40 mmu-miR-3473 beg:163 end:184 pic:3' CCGACT--CGGTAGAGAGGT 5'& ||||| |||||||.|.| &5' -GCTGAGTGCCATCTTTTC- 3' Rnf40 mmu-miR-3474 beg:200 end:220 pic:3' CTTAGGTGCAGAGGAGGGTCCC 5'& || || |||||||| &5' ----CCTCGGGGACTCCCAGG- 3' Rnf40 mmu-miR-34a beg:507 end:529 pic:3' TGTTGGTCGA--TTCTGTGACGGT 5'& .||| | ..|||||||||| &5' ----TCAGGTCAGGGACACTGCCA 3' Rnf40 mmu-miR-34b-5p beg:507 end:529 pic:3' TGTTAGTCGA-TTAATGTGACGGA 5'& |||| | |. |||||||| &5' ----TCAGGTCAGGGACACTGCC- 3' Rnf40 mmu-miR-34c beg:760 end:783 pic:3' CGTTAGTCGATT-GATGTGACGGA 5'& || ||||||. |||||||| &5' GCTC-CAGCTAGCCTACACTG--- 3' Rnf40 mmu-miR-351 beg:528 end:551 pic:3' GTCCGAGTTTCCCGAG-GAGTCCCT 5'& |||| || || .||||||. &5' ----CTCAT-GGTCTGATTCAGGGG 3' Rnf40 mmu-miR-378star beg:498 end:521 pic:3' TGTGTCCTGGACC---TCAGTCCTC 5'& .||| ||| .||||||. &5' GCAC----CCTATTCAGGTCAGGG- 3' Rnf40 mmu-miR-449a beg:507 end:529 pic:3' TGGTCGATTGTTA-TGTGACGGT 5'& .||| | ||. ||||||||| &5' -TCAGGT--CAGGGACACTGCCA 3' Rnf40 mmu-miR-449b beg:508 end:529 pic:3' CGGTCGA-TTGTTGTGACGGA 5'& .||| | |. .|||||||| &5' -TCAGGTCAGGGACACTGCC- 3' Rnf40 mmu-miR-449c beg:508 end:529 pic:3' GGTCGA-TCGTTACGTGACGGA 5'& ||| | || .| ||||||| &5' -CAGGTCAGGGA--CACTGCC- 3' Rnf40 mmu-miR-455 beg:893 end:914 pic:3' CACATATACGGGCACCTGACG 5'& |||| |.||. |||.|||| &5' GTGT-TGTGTA--TGGGCTGC 3' Rnf40 mmu-miR-465a-3p beg:459 end:469 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||||.| &5' --------------CCCTGGT- 3' Rnf40 mmu-miR-465b-3p beg:459 end:469 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||||.| &5' --------------CCCTGGT- 3' Rnf40 mmu-miR-465c-3p beg:459 end:469 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||||.| &5' --------------CCCTGGT- 3' Rnf40 mmu-miR-470 beg:338 end:364 pic:3' TGAGTG-GTCACGGTCAGGTTCTT 5'& || .| ||||||. |||.|.| &5' ACAAGCTCAGTGCTGA-CCAGGGA 3' Rnf40 mmu-miR-486 beg:125 end:149 pic:3' GAGCCCCG----TCGAGTCATGTCCT 5'& ||||| .|. ||.||||| &5' ---GGGGCTACTGGTGC-GTGCAGGA 3' Rnf40 mmu-miR-488 beg:67 end:90 pic:3' CTGGTTCTTTGTC-GGAAAGTT 5'& |.|| ||| |||||||. &5' GGCCCC--AACCTCCCTTTCAG 3' Rnf40 mmu-miR-500 beg:127 end:143 pic:3' ACTTGGGAACGGGT-CCACGTAA 5'& ||. |||||.| &5' ---------GCTACTGGTGCGT- 3' Rnf40 mmu-miR-599 beg:267 end:286 pic:3' CAAACTA-TTTGACTGTGTT 5'& ||| |.|| ||.||| &5' ---TGAGAAGACAGATACA- 3' Rnf40 mmu-miR-615-5p beg:196 end:217 pic:3' CTAGGC-TCGTGGCCCCTGGGGG 5'& |.| ||| .|||||||.||| &5' ---CTGCAGCCTCGGGGACTCCC 3' Rnf40 mmu-miR-652 beg:157 end:178 pic:3' GTGTTGGGATC-AC-CGCGGTAA 5'& |||| || || |.||||| &5' ----ACCCAAGCTGAGTGCCAT- 3' Rnf40 mmu-miR-654-3p beg:728 end:739 pic:3' TTCCACTACCAGTCGTCTGTAT 5'& ||||.||| &5' -------------GCAGGCAT- 3' Rnf40 mmu-miR-654-5p beg:691 end:706 pic:3' TGTGTACAAGACGTCGAATGGT 5'& |||| |||.||| &5' ----------TGCAACTTGCCA 3' Rnf40 mmu-miR-664 beg:905 end:929 pic:3' ATCCGACCCCT--CATTTACTTAT 5'& |.||||| || ||||||| &5' TGGGCTGCTAATTGTT-ATGAATA 3' Rnf40 mmu-miR-670 beg:500 end:522 pic:3' AAGTGGTGTATG-TGAGTCCCTA 5'& |||| .|| . ||||||| &5' --CACCCTATTCAGGTCAGGGA- 3' Rnf40 mmu-miR-670 beg:344 end:364 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& ||| ..| || |||||| &5' -TCAGTGCTG--AC-CAGGGA- 3' Rnf40 mmu-miR-670 beg:539 end:551 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& |.||||||. &5' ------------ATTCAGGGG- 3' Rnf40 mmu-miR-670 beg:0 end:17 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& ||| ||||||||. &5' ---ACCTGAA--ACTCAGGGG- 3' Rnf40 mmu-miR-672 beg:62 end:82 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& .|| .| |||||||| &5' ----GCAATG-GCCCCAACCTC- 3' Rnf40 mmu-miR-673-3p beg:215 end:246 pic:3' CCACGTGTCT-----TGA-GTCGGGGCCT 5'& ||| ||||| ||| .| ||..||| &5' GGTACACAGCATCCTACTGTAACCTTGGA 3' Rnf40 mmu-miR-673-3p beg:186 end:209 pic:3' CCACGTGTCTTGA-GTCGGGGCCT 5'& ||. |||| || |||||.|||. &5' --TGT-CAGATCTGCAGCCTCGGG 3' Rnf40 mmu-miR-673-3p beg:335 end:356 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& |||||| |.|||||. |.| &5' --TGCACA-AGCTCAGTGCTG-- 3' Rnf40 mmu-miR-677 beg:765 end:784 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& ||||| | |||||| &5' -----AGCTAGCCTACACTGA- 3' Rnf40 mmu-miR-690 beg:422 end:444 pic:3' AAACCAACACTCGGATCGGAAA 5'& ||| | ..|.||||| &5' --TGGGCAGGGATTTGGCCTT- 3' Rnf40 mmu-miR-691 beg:305 end:321 pic:3' AAAAGACGGAGAGAAGTCCTTA 5'& |||| | |||||| &5' -------CCTC-CACCAGGAA- 3' Rnf40 mmu-miR-693-3p beg:230 end:252 pic:3' AATGTCGGTGTAGACTTTCGACG 5'& ||| |. || .||.|||||| &5' -TACTGTAACC-TTGGAAGCTG- 3' Rnf40 mmu-miR-694 beg:540 end:558 pic:3' GAAGTCCGTTGTAAAAGTC 5'& |||||| ..||||||. &5' -TTCAGG-GGCATTTTT-- 3' Rnf40 mmu-miR-696 beg:329 end:354 pic:3' GGGTGT-CGT--TCGTGT-GCG 5'& ||||. ||| ||| || .|| &5' CCCATCTGCACAAGCTCAGTGC 3' Rnf40 mmu-miR-705 beg:32 end:56 pic:3' ACGG-GTGGGGTGGA-GGGTGG 5'& ||. ..||||| || |||||. &5' -GCTGTGCCCCAGCTCCCCACT 3' Rnf40 mmu-miR-709 beg:578 end:597 pic:3' AGGAGGACGGAGACGGAGG 5'& .||||| |||.| ||||| &5' -TCTCCT-CCTTT-CCTCC 3' Rnf40 mmu-miR-713 beg:342 end:354 pic:3' CGACACACGGAAGTCACGT 5'& || ||||||| &5' -------GC--TCAGTGC- 3' Rnf40 mmu-miR-743b-5p beg:412 end:431 pic:3' ACTACCTGTGGTCA-GACTTGT 5'& .| |||| |||..|| &5' ------GCCCCAGGCCTGGGCA 3' Rnf40 mmu-miR-744 beg:638 end:661 pic:3' ACGACAATCGGGATCGGGGCGT 5'& |. |.||||||||||.|| &5' -GTACCTGGCCCTAGCCCTGC- 3' Rnf40 mmu-miR-760 beg:79 end:102 pic:3' AGGGGT-GTCTG-GGT-CTCGGC 5'& ||||. ||||| ||| ||||| &5' TCCCTTTCAGACTCCATGAGCC- 3' Rnf40 mmu-miR-762 beg:30 end:51 pic:3' CGAGACAGGGC-CGGGGTCGGGG 5'& | |.| ||||||||.|| &5' -----GGGCTGTGCCCCAGCTCC 3' Rnf40 mmu-miR-767 beg:449 end:472 pic:3' ACGAGTCTGTTGGTACCACGT 5'& |.|. ||| |||||.| &5' -GTTTCCTGTACCCTGGTGTA 3' Rnf40 mmu-miR-770-3p beg:308 end:330 pic:3' GGTCGAGGTGCAG----TCCGGGTGC 5'& |||||| .|||.||| &5' ----CTCCACCAGGAAAGGGCTCAC- 3' Rnf40 mmu-miR-804 beg:859 end:881 pic:3' AGGTCCACTCCTTG-----TTGAGTGT 5'& ||||.| .||||||| &5' --------AGGAGCTTTTGGACTCACA 3' Rnf40 mmu-miR-872 beg:238 end:262 pic:3' GGACT--TGATTGTTCATTGGAA 5'& |.||. .||.|| ||||| &5' CTTGGAAGCTGACCAA-AACCT- 3' Rnf40 mmu-miR-9 beg:341 end:364 pic:3' AGTATGTCGA-TCT--ATTGGTTTCT 5'& |||| || |.||||..|| &5' ------AGCTCAGTGCTGACCAGGGA 3' Rnf40 mmu-miR-92astar beg:37 end:56 pic:3' CATTACGGTGGTT-AGGGGTGGA 5'& .|||| |||. |||||||. &5' ---GTGCC-CCAGCTCCCCACT- 3' Rnf40 mmu-miR-124star beg:9 end:28 pic:3' TAGTTCCAGGCGACACTTGTGC 5'& |||.|| | ||||||| &5' -TCAGGGGACTT--TGAACAC- 3' Rnf40 mmu-miR-466f-3p beg:893 end:908 pic:3' CACACATACACACACACATAC 5'& |||| |||||||| &5' --------GTGT-TGTGTATG 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf40 RAID00086944 mmu-miR-3097-3p miRNA MIMAT0014916 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID00149382 mmu-miR-666-3p miRNA MIMAT0004823 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID00150304 mmu-miR-669o-3p miRNA MIMAT0017347 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID00263326 mmu-miR-7048-5p miRNA MIMAT0028000 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID00309079 mmu-miR-762 miRNA MIMAT0003892 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID00323782 mmu-miR-449b miRNA MIMAT0005447 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID00336642 mmu-miR-449a-5p miRNA MIMAT0001542 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID00406127 mmu-miR-6914-5p miRNA MIMAT0027728 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID00633684 mmu-miR-6929-5p miRNA MIMAT0027758 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID00671057 mmu-miR-365-3p miRNA MIMAT0000711 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID00775365 mmu-miR-351-5p miRNA MIMAT0000609 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID00781732 mmu-miR-294-3p miRNA MIMAT0000372 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID00843659 mmu-miR-872-5p miRNA MIMAT0004934 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01059702 mmu-miR-377-3p miRNA MIMAT0000741 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01262412 mmu-miR-669a-3-3p miRNA MIMAT0017251 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01271036 mmu-miR-3099-5p miRNA MIMAT0014815 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01290620 mmu-miR-181d-5p miRNA MIMAT0004324 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01311075 mmu-miR-125a-5p miRNA MIMAT0000135 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01369603 mmu-miR-181a-5p miRNA MIMAT0000210 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01386215 mmu-miR-3070-5p miRNA MIMAT0014846 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01403890 mmu-miR-491-5p miRNA MIMAT0003486 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01488207 mmu-miR-7032-5p miRNA MIMAT0027968 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01540654 mmu-miR-291a-3p miRNA MIMAT0000368 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01557705 mmu-miR-6940-5p miRNA MIMAT0027780 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01624433 mmu-miR-34b-5p miRNA MIMAT0000382 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01652247 mmu-miR-181c-5p miRNA MIMAT0000674 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01692135 mmu-miR-296-3p miRNA MIMAT0004576 Rnf40 mRNA 233900 CLIP-seq//Prediction 0.6478 Rnf40 RAID01806139 mmu-miR-15a-5p miRNA MIMAT0000526 Rnf40 mRNA 233900 NGS (Next Generation Sequencing) 0.5483 Rnf40 RAID01840578 mmu-miR-3083-5p miRNA MIMAT0014874 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01857005 mmu-miR-7064-5p miRNA MIMAT0028032 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01972071 mmu-miR-9768-5p miRNA MIMAT0036459 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID01973828 mmu-miR-6904-5p miRNA MIMAT0027708 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02075589 mmu-miR-669a-3p miRNA MIMAT0017243 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02085935 mmu-miR-1982-5p miRNA MIMAT0009459 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02110699 mmu-miR-34a-5p miRNA MIMAT0000542 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02319107 mmu-miR-34c-5p miRNA MIMAT0000381 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02325966 mmu-miR-7681-3p miRNA MIMAT0029883 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02345738 mmu-miR-7648-3p miRNA MIMAT0029799 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02390667 mmu-miR-302a-3p miRNA MIMAT0000380 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02425460 mmu-miR-1962 miRNA MIMAT0009435 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02482804 mmu-miR-185-3p miRNA MIMAT0016996 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02547943 mmu-miR-6990-5p miRNA MIMAT0027882 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02548809 mmu-miR-7049-3p miRNA MIMAT0028003 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02681018 mmu-miR-485-5p miRNA MIMAT0003128 Rnf40 mRNA 233900 CLIP-seq//Prediction 0.6478 Rnf40 RAID02705793 mmu-miR-7051-5p miRNA MIMAT0028006 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02730027 mmu-miR-295-3p miRNA MIMAT0000373 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID02914338 mmu-miR-183-5p miRNA MIMAT0000212 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID03031067 mmu-miR-449c-5p miRNA MIMAT0003460 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID03117700 mmu-miR-302b-3p miRNA MIMAT0003374 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID03240326 mmu-miR-125b-5p miRNA MIMAT0000136 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID03573869 mmu-miR-302d-3p miRNA MIMAT0003377 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID03676828 mmu-miR-6388 miRNA MIMAT0025135 Rnf40 mRNA 233900 Prediction 0.1828 Rnf40 RAID03774064 mmu-miR-181b-5p miRNA MIMAT0000673 Rnf40 mRNA 233900 Prediction 0.1828