DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT576977 mmu-miR-129-5p Mus musculus Triml1 244448 Mus musculus HITS-CLIP Functional MTI (Weak) 26203562 MIRT576978 mmu-miR-375-3p Mus musculus Triml1 244448 Mus musculus HITS-CLIP Functional MTI (Weak) 26203562 MIRT576979 mmu-miR-542-5p Mus musculus Triml1 244448 Mus musculus HITS-CLIP Functional MTI (Weak) 26203562

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0003409 mmu-miR-467a 244448 Triml1 gcguAUAUGUACGUCC-GUGAAu |:|:::||| || ||||| augcUGUGUGUGCUGGCCACUUa 2 19 242 264 [mm9:8:44215240-44215262:-] 0.5658 130 0 -23.36 -0.6280 MIMAT0003171 mmu-miR-542-5p 244448 Triml1 agcacuguacuacuaGGGGCUc |||||| ucacauaucagauuaCCCCGAa 2 8 80 101 [mm9:8:44215403-44215424:-] 0.5152 120 6 -14.27 -0.2522 MIMAT0004789 mmu-miR-450a-3p 244448 Triml1 uacuuacguuucguAGGGGUUa ||||||| aaaaaucuucccucUCCCCAAa 2 9 113 134 [mm9:8:44215370-44215391:-] 0.5213 140 7 -11.11 -0.8504 MIMAT0004188 mmu-miR-802 244448 Triml1 uuccUACUUAGAAACAAUGACu || || | | ||||||| agucAUUAA-CGUGGUUACUGu 2 19 48 68 [mm9:8:44215436-44215456:-] 0.5032 152 7 -10.35 -0.5959 MIMAT0003476 mmu-miR-669b 244448 Triml1 uguacguguacGUGUGUUUUga |: |||||| ucagauuacccCGAACAAAAaa 3 12 87 108 [mm9:8:44215396-44215417:-] 0.5113 123 0 -7.17 -0.1303 MIMAT0005448 mmu-miR-467b 244448 Triml1 guAUAUGUACGUCC-GUGAAUg |:|:::||| || |||||| gcUGUGUGUGCUGGCCACUUAa 2 20 244 265 [mm9:8:44215239-44215260:-] 0.5658 135 6 -19.64 -0.5362 MIMAT0004891 mmu-miR-509-3p 244448 Triml1 gguaaugucuuuACAGUUAGu |||||||| uccauucuugccUGUCAAUCu 2 10 284 304 [mm9:8:44215200-44215220:-] 0.5165 145 7 -15.48 -0.5763 MIMAT0005836 mmu-miR-1186 244448 Triml1 guacggaaauuaAGGUCGUGag |:|||||| acuaaaaaucuaUUCAGCACca 3 11 171 192 [mm9:8:44215312-44215333:-] 0.4793 126 0 -12.65 -0.1543 MIMAT0007871 mmu-miR-1892 244448 Triml1 uaGGAGGGAGGGCAGGGGUUUa |:|||||| |||||||| auCUUCCCUC---UCCCCAAAg 2 21 117 135 [mm9:8:44215369-44215387:-] 0.5213 164 7 -28.85 -0.7784 MIMAT0009446 mmu-miR-1971 244448 Triml1 agagucGGGUCGGAAAUg ||| ||||||| augauaCCCUGCCUUUAa 2 13 204 221 [mm9:8:44215283-44215300:-] 0.4793 152 7 -17.11 -0.8040 MIMAT0009458 mmu-miR-1981 244448 Triml1 cggUGCAGAUUCGGGUCGGAAAUg | | : | ||| ||||||| agaAAGAUGAUACCCUGCCUUUAa 2 22 198 221 [mm9:8:44215283-44215306:-] 0.4793 153 7 -17.11 -0.8004 MIMAT0011221 mmu-miR-2145 244448 Triml1 uugguccgggcUGGGACGa ||||||| agaaagaugauACCCUGCc 2 9 198 216 [mm9:8:44215288-44215306:-] 0.4793 140 7 -13.38 -1.0608 MIMAT0000133 mmu-miR-101a 244448 Triml1 aaGUCAAUAGUGUC-AUGACAu || ||| |:::| |||||| guCA-UUAACGUGGUUACUGUa 2 20 49 69 [mm9:8:44215435-44215455:-] 0.5032 125 6 -15.29 -0.7968 MIMAT0000209 mmu-miR-129-5p 244448 Triml1 cguucgggucuggcGUUUUUc |||||| cagauuaccccgaaCAAAAAa 2 8 88 108 [mm9:8:44215396-44215416:-] 0.5113 120 6 -10.87 -0.1334 MIMAT0000219 mmu-miR-24 244448 Triml1 gacaaggacgACUUGACUCGGu || ||||||| ----gggacaUGCCCUGAGCCu 2 13 1 18 [mm9:8:44215486-44215503:-] 0.4620 144 7 -15.33 -0.1732 MIMAT0000220 mmu-miR-190 244448 Triml1 ugGAUUAUAUAGUUUGUAUAGu | || | ||| ||||||| uuCAAAGACAUC--ACAUAUCa 2 21 70 89 [mm9:8:44215415-44215434:-] 0.5152 153 7 -10.48 -0.9312 MIMAT0000223 mmu-miR-193 244448 Triml1 ugACCCUGAAAC---AUCCGGUCAa || | | || ||||||||| ccUGUCAAUCUGUCAUAGGCCAGUu 2 21 294 318 [mm9:8:44215186-44215210:-] 0.5165 151 7 -20.12 -1.0588 MIMAT0000538 mmu-miR-31 244448 Triml1 gucGAUACGGUCGUAGAACGGa ||:| ||| ||||||| ucaCUGU-CCA--UUCUUGCCu 2 20 278 296 [mm9:8:44215208-44215226:-] 0.5165 146 7 -20.52 -0.8045 MIMAT0000539 mmu-miR-92a 244448 Triml1 guccggcccuguuCACGUUAu ||||||| cacaaacccaguuGUGCAAUg 2 9 142 162 [mm9:8:44215342-44215362:-] 0.5314 140 7 -12.83 -0.6497 MIMAT0000616 mmu-miR-101b 244448 Triml1 aaGUCGAUAGUGUC-AUGACAu || :|| |:::| |||||| guCA-UUAACGUGGUUACUGUa 2 20 49 69 [mm9:8:44215435-44215455:-] 0.5032 121 6 -15.50 -0.8041 MIMAT0000652 mmu-miR-25 244448 Triml1 agUCUGGCUCUGUUCACGUUAc | ||| || : ||||||| acAAACCCAGUU--GUGCAAUg 2 21 143 162 [mm9:8:44215342-44215361:-] 0.5314 149 7 -19.49 -0.6137 MIMAT0000654 mmu-miR-32 244448 Triml1 acgUUGAAUCAUUACACGUUAu ||| ||| |||||||| acaAACCCAGU--UGUGCAAUg 2 20 143 162 [mm9:8:44215342-44215361:-] 0.5314 156 7 -14.83 -0.6460 MIMAT0000708 mmu-miR-363 244448 Triml1 augucuaccuaUGGCACGUUAa :::||||||| ccacaaacccaGUUGUGCAAUg 2 12 141 162 [mm9:8:44215342-44215363:-] 0.5314 143 7 -10.72 -0.6572 MIMAT0000711 mmu-miR-365 244448 Triml1 uauuccuaaaaauccCCGUAAu |||||| guuuuauaaauacauGGCAUUu 2 8 316 337 [mm9:8:44215167-44215188:-] 0.5463 120 6 -6.73 -0.2337 MIMAT0000739 mmu-miR-375 244448 Triml1 agugcgcucggcuuGCUUGUUu ||||||| auaucagauuacccCGAACAAa 2 9 84 105 [mm9:8:44215399-44215420:-] 0.5113 140 7 -13.08 -1.0205 MIMAT0003181 mmu-miR-367 244448 Triml1 agugguaacgauuuCACGUUAa ||||||| ccacaaacccaguuGUGCAAUg 2 9 141 162 [mm9:8:44215342-44215363:-] 0.5314 140 7 -10.95 -0.6572 MIMAT0004186 mmu-miR-301b 244448 Triml1 cgaAACUG-UUAUGGUAAC-GUGAc || || || | |:||| |||| cacUUAACAAACAGCGUUGUCACUg 2 21 259 283 [mm9:8:44215221-44215245:-] 0.5165 127 0 -17.57 -0.3408 MIMAT0004852 mmu-miR-190b 244448 Triml1 uuGGGUUAUAGU-UUGUAUAGu ::||| : || ||||||| uaUUCAAAGACAUCACAUAUCa 2 20 68 89 [mm9:8:44215415-44215436:-] 0.5152 150 7 -14.08 -0.9558 MIMAT0004859 mmu-miR-193b 244448 Triml1 ucgcccugaaacACCCGGUCAa | ||||||| gucaaucugucaUAGGCCAGUu 2 11 297 318 [mm9:8:44215186-44215207:-] 0.5165 142 7 -14.19 -1.0588 MIMAT0004899 mmu-miR-92b 244448 Triml1 ccuccggcccugcuCACGUUAu ||||||| ccacaaacccaguuGUGCAAUg 2 9 141 162 [mm9:8:44215342-44215363:-] 0.5314 140 7 -12.24 -0.6497

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G064503 Triml1 Mus musculus 244448

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Triml1 mmu-miR-1971 beg:207 end:221 pic:3' AGAGTCGGGTCGGAAATG 5'& ||| ||||||| &5' ------CCCTGCCTTTA- 3' Triml1 mmu-miR-193 beg:306 end:319 pic:3' TGACCCTGAAACATCCGGTCAA 5'& |||||||||| &5' ------------TAGGCCAGTT 3' Triml1 mmu-miR-193b beg:308 end:319 pic:3' TCGCCCTGAAACACCCGGTCAA 5'& |||||||| &5' --------------GGCCAGTT 3' Triml1 mmu-miR-509-3p beg:293 end:304 pic:3' GGTAATGTCTTTACAGTTAGT 5'& |||||||| &5' ------------TGTCAATC- 3' Triml1 mmu-miR-32 beg:143 end:163 pic:3' ACGTTGAATCATTACACGTTAT 5'& ||| ||| ||||||||. &5' ---AACCCAGT--TGTGCAATG 3' Triml1 mmu-miR-367 beg:144 end:162 pic:3' AGTGGTAACGATTTCACGTTAA 5'& ||| |.| ||||||| &5' --ACCCA-GTT---GTGCAAT- 3' Triml1 mmu-miR-92b beg:152 end:163 pic:3' CCTCCGGCCCTGCTCACGTTAT 5'& |||||||. &5' --------------GTGCAATG 3' Triml1 mcmv-miR-m88-1star beg:46 end:65 pic:3' GGCTACAGTCCCCCAGCCAGTA 5'& |||| .|||.| &5' -----GTCATTAACGTGGTTA- 3' Triml1 mmu-let-7d beg:201 end:220 pic:3' TTGATACGTTGGATGATGGAGA 5'& ||| ||| ||.|||.| &5' ----ATGATACC--CTGCCTTT 3' Triml1 mmu-miR-101a beg:54 end:70 pic:3' AAGTCAATAGTGTC-ATGACAT 5'& |. | ||||||| &5' ---------CGTGGTTACTGTA 3' Triml1 mmu-miR-101b beg:54 end:70 pic:3' AAGTCGATAGTGTC-ATGACAT 5'& |. | ||||||| &5' ---------CGTGGTTACTGTA 3' Triml1 mmu-miR-103 beg:231 end:249 pic:3' AGTATCGGGACATGTTACGACGA 5'& .||| .| ||||||. &5' -------TCTGAGCTATGCTGT- 3' Triml1 mmu-miR-1190 beg:217 end:231 pic:3' CTGTCTCCCCTTGGAGTCGACT 5'& |||| |||.||| &5' ----------AACC-CAGTTGA 3' Triml1 mmu-miR-144 beg:53 end:70 pic:3' TCATGTAGTAGATATGACAT 5'& ||.| .| ||||||| &5' ---ACGTGGT---TACTGTA 3' Triml1 mmu-miR-184 beg:270 end:288 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& | ||.||| |.||||| &5' --CGTTGTCA-----CTGTCCA 3' Triml1 mmu-miR-1892 beg:114 end:135 pic:3' TAGGAGGGAGGGCAGGGGTTTA 5'& |||.|||||| |||||||| &5' ATCTTCCCTC---TCCCCAAA- 3' Triml1 mmu-miR-190b beg:66 end:90 pic:3' TTGGGTTATAGTT-TGTATAGT 5'& |..||| || |||||||| &5' -ATTCAAAGACATCACATATCA 3' Triml1 mmu-miR-20b beg:317 end:339 pic:3' GATGGACGTGATACTCGTGAAAC 5'& ||. .|| ||| |||.||| &5' -TATAAATAC-ATG-GCATTTT- 3' Triml1 mmu-miR-2135 beg:122 end:141 pic:3' CAAAGCCGGGG-TTCTGGAGA 5'& || |||| |||||.|. &5' ---TCT-CCCCAAAGACTTT- 3' Triml1 mmu-miR-22star beg:149 end:169 pic:3' ATTTCGA-ACGGTGACTTCTTGA 5'& ||.| ||| ||||||.| &5' ---AGTTGTGCAA-TGAAGAGC- 3' Triml1 mmu-miR-24 beg:220 end:243 pic:3' GACAAGGACGACTT---GACTCGGT 5'& || |.||| ||||||.| &5' -----CCAGTTGATTATCTGAGCTA 3' Triml1 mmu-miR-25 beg:141 end:163 pic:3' AGTCTGGCTCTGTTCACGTTAC 5'& || ||| || |||||||| &5' -CAAACCCAGTT--GTGCAATG 3' Triml1 mmu-miR-31 beg:278 end:297 pic:3' GTCGATACGGTCGTAGAACGGA 5'& ||.| ||| |||||||| &5' ---CTGT-CCAT--TCTTGCCT 3' Triml1 mmu-miR-338-3p beg:241 end:258 pic:3' GTTGTTTTAGTGAC---TACGACCT 5'& .||| .|||||| &5' ----------GCTGTGTGTGCTGG- 3' Triml1 mmu-miR-463 beg:289 end:309 pic:3' GATGGAATATACCACAGATAGT 5'& |.||| |||.||| &5' -TGCCTGTCAA----TCTGTCA 3' Triml1 mmu-miR-542-3p beg:293 end:311 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& |.|||||||||||.| &5' -------TGTCAATCTGTCATA 3' Triml1 mmu-miR-666-5p beg:281 end:299 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& || ||. || ||||.|. &5' ---TC-CATT-CT-TGCCTGT- 3' Triml1 mmu-miR-669j beg:236 end:255 pic:3' ACAAACG-TACACTCATATACGT 5'& || ||| ||.|.||| &5' -----GCTATGCT-GTGTGTGC- 3' Triml1 mmu-miR-705 beg:119 end:145 pic:3' ACGGGT--GGGG----TGGAGGGTGG 5'& ||| |||| ||.|.|||| &5' --CCCTCTCCCCAAAGACTTTCCAC- 3' Triml1 mmu-miR-743b-5p beg:220 end:241 pic:3' ACTACCTGTGGTC-------AGACTTGT 5'& || |||| |||||.| &5' ------AC-CCAGTTGATTATCTGAGC- 3' Triml1 mmu-miR-758 beg:308 end:326 pic:3' ATCACCTGGTCC-AGTGTTT 5'& |.|||| |.|.||| &5' -----GGCCAGTTTTATAAA 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Triml1 RAID00306396 mmu-miR-340-5p miRNA MIMAT0004651 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID00446767 mmu-miR-92b-3p miRNA MIMAT0004899 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID00470404 mmu-miR-6541 miRNA MIMAT0025588 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID00479768 mmu-miR-1981-5p miRNA MIMAT0009458 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID00490897 mmu-miR-32-5p miRNA MIMAT0000654 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID00500856 mmu-miR-190b-5p miRNA MIMAT0004852 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID00572102 mmu-miR-365-3p miRNA MIMAT0000711 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID00605148 mmu-miR-25-3p miRNA MIMAT0000652 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID00803905 mmu-miR-1971 miRNA MIMAT0009446 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID01321555 mmu-miR-450a-2-3p miRNA MIMAT0004789 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID01474112 mmu-miR-8093 miRNA MIMAT0031394 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID01629791 mmu-miR-190a-5p miRNA MIMAT0000220 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID01699451 mmu-miR-24-3p miRNA MIMAT0000219 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID01720984 mmu-miR-542-5p miRNA MIMAT0003171 Triml1 mRNA 244448 CLIP-seq 0.5483 Triml1 RAID01811681 mmu-miR-129-5p miRNA MIMAT0000209 Triml1 mRNA 244448 CLIP-seq//Prediction 0.6308 Triml1 RAID01866108 mmu-miR-367-3p miRNA MIMAT0003181 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID02201576 mmu-miR-667-5p miRNA MIMAT0017239 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID02312399 mmu-miR-101b-3p miRNA MIMAT0000616 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID02482740 mmu-miR-5112 miRNA MIMAT0020620 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID03011762 mmu-miR-375-3p miRNA MIMAT0000739 Triml1 mRNA 244448 CLIP-seq//Prediction 0.6308 Triml1 RAID03091232 mmu-miR-31-5p miRNA MIMAT0000538 Triml1 mRNA 244448 Prediction 0.2202 Triml1 RAID03200916 mmu-miR-193a-3p miRNA MIMAT0000223 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID03249025 mmu-miR-101a-3p miRNA MIMAT0000133 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID03268694 mmu-miR-1892 miRNA MIMAT0007871 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID03558066 mmu-miR-363-3p miRNA MIMAT0000708 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID03701758 mmu-miR-193b-3p miRNA MIMAT0004859 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID03758125 mmu-miR-92a-3p miRNA MIMAT0000539 Triml1 mRNA 244448 Prediction 0.1828 Triml1 RAID03945521 mmu-miR-301b-3p miRNA MIMAT0004186 Triml1 mRNA 244448 Prediction 0.1828