DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Amfr ATTTA 147-2066 2208-2212;3053-3057;3280-3284 Coordinated posttranscriptional mRNA population dynamics during#Mol Syst Biol 2009; 5: 288.! Amfr WWATTTAWW 147-2066 2206-2214;3278-3286 Coordinated posttranscriptional mRNA population dynamics during#Mol Syst Biol 2009; 5: 288.! Amfr WWWATTTAWWW 147-2066 3277-3287 Coordinated posttranscriptional mRNA population dynamics during#Mol Syst Biol 2009; 5: 288.!

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT011756 mmu-miR-15a-5p Mus musculus Amfr 23802 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT008968 mmu-miR-362-5p Mus musculus Amfr 23802 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004526 mmu-miR-101a* 23802 Amfr cguAGUCGUGAC-AC----UAUUGACu |:|| |||| || :|||||| uuuUUAG-ACUGUUGAUAAGUAACUGa 2 20 1158 1183 [mm9:8:96495884-96495909:-] 0.7257 131 6 -16.62 -0.1308 MIMAT0000152 mmu-miR-140* 23802 Amfr ggcACCAAGAU-GGGACACCau | ||| | :||||||| uguUAGUUAAAUUCCUGUGGgu 3 19 1256 1277 [mm9:8:96495790-96495811:-] 0.7257 133 0 -17.63 -0.1075 MIMAT0004533 mmu-miR-141* 23802 Amfr agguugugacgugacCUUCUAc |||||| aacaggcgccuagguGAAGAUa 2 8 1192 1213 [mm9:8:96495854-96495875:-] 0.7257 120 6 -12.59 -0.1229 MIMAT0004540 mmu-miR-186* 23802 Amfr ggguUUUUUAAGUGGAAUCCCg ||| : | ||||||| gauuAAAUGCUGUGCUUAGGGa 2 19 459 480 [mm9:8:96496587-96496608:-] 0.4484 146 7 -12.72 -0.1172 MIMAT0004541 mmu-miR-188-3p 23802 Amfr acguuugGGACG-UACACC-CUc ||||| :||||| || aguucugCCUGCUGUGUGGAGAc 2 15 60 82 [mm9:8:96496985-96497007:-] 0.5334 121 0 -23.40 -0.1170 MIMAT0004546 mmu-miR-202-5p 23802 Amfr uuuCUUCAUA--UACGUAUCCUu ||| || | ||||||| uuuGAAACAUGCAAUCAUAGGAu 2 19 996 1018 [mm9:8:96496049-96496071:-] 0.6303 145 7 -10.05 -1.0208 MIMAT0004578 mmu-miR-300* 23802 Amfr uguuuccuauUGGAGAGAAGuu |::||||||| ucuuugugacAUUUCUCUUCcc 3 13 163 184 [mm9:8:96496883-96496904:-] 0.7470 132 0 -11.82 -0.1007 MIMAT0004583 mmu-miR-130b* 23802 Amfr ucaucACGUUGUCCCUUUCUCa || |::| ||||||| guaccUGGAGUA--GAAAGAGg 2 18 548 567 [mm9:8:96496500-96496519:-] 0.5419 146 7 -11.06 -0.1507 MIMAT0004624 mmu-miR-15a* 23802 Amfr acuccgucgugUCAUACCGGAc :| ||||||| uuuuaacucuaGGCAUGGCCUc 2 12 202 223 [mm9:8:96496844-96496865:-] 0.6115 143 7 -14.29 -0.1862 MIMAT0004628 mmu-miR-21* 23802 Amfr cugUCGG---GUAGC-UGACGACAAc |||| | |:| ||||||||| aaaAGCCUUACCUUGAACUGCUGUUa 2 20 1235 1260 [mm9:8:96495807-96495832:-] 0.7257 157 7 -21.25 -1.0769 MIMAT0004628 mmu-miR-21* 23802 Amfr cuGUCGGGUAGCUGACGACAAc ::|:::|| | ||||||| cgUGGUUUAU--AAUGCUGUUc 2 21 1451 1470 [mm9:8:96495597-96495616:-] 0.4389 149 7 -14.00 -0.1553 MIMAT0004628 mmu-miR-21* 23802 Amfr cugUCGGGUAGCUGACGACAAc :|:::|| | ||||||| uggGGUUUAU--AAUGCUGUUc 2 20 1419 1438 [mm9:8:96495629-96495648:-] 0.4615 148 7 -13.75 -0.3231 MIMAT0004638 mmu-miR-323-5p 23802 Amfr cgCUUGCGCGGUGCCUGGUGGa | | | || | ||||||| caGCAGGAGC--CUGACCACCa 2 21 420 439 [mm9:8:96496628-96496647:-] 0.4143 145 7 -19.15 -0.1369 MIMAT0000551 mmu-miR-323-3p 23802 Amfr ucuccagcuggcacAUUACAc |||||| agguuuuuuuuuuuUAAUGUu 2 8 1045 1065 [mm9:8:96496002-96496022:-] 0.6303 120 6 -5.88 -0.1112 MIMAT0004640 mmu-miR-325 23802 Amfr aaCUAUCCUCCACGAGUUAUUu |||| | :||||||| aaGAUAAUUUAU-UUCAAUAAa 2 21 1208 1228 [mm9:8:96495839-96495859:-] 0.7257 142 7 -9.59 -1.2939 MIMAT0004640 mmu-miR-325 23802 Amfr aacuauccuccacgaGUUAUUu |||||| uuuauuguaaagcaaCAAUAAu 2 8 1324 1345 [mm9:8:96495722-96495743:-] 0.7257 120 6 -4.79 -0.1615 MIMAT0004643 mmu-miR-331-5p 23802 Amfr ccuagggacccugGUAUGGAUc |||||||: uaaauguauuuuaCAUACCUGg 2 10 1133 1154 [mm9:8:96495913-96495934:-] 0.7257 129 0 -15.48 -0.1153 MIMAT0004647 mmu-miR-338-5p 23802 Amfr gugagucgugguccuAUAACAa |||||| guagcaauuuguuuuUAUUGUa 2 8 1311 1332 [mm9:8:96495735-96495756:-] 0.7257 120 6 -8.75 -0.3147 MIMAT0000605 mmu-miR-350 23802 Amfr cuuucacauacccGAAACACUu |||||||| uuuguaauacuuuCUUUGUGAc 2 10 151 172 [mm9:8:96496895-96496916:-] 0.7470 145 7 -9.52 -1.0217 MIMAT0004666 mmu-miR-33* 23802 Amfr cacuACGUGACACCUUUGUAAc | | || | |||||||| cucuUCCCCU-UAGAAACAUUg 2 19 177 197 [mm9:8:96496870-96496890:-] 0.6792 152 7 -11.70 -0.4240 MIMAT0004668 mmu-miR-138* 23802 Amfr gggaccACAACACUUCAUCGGc | | | |||||||| caccacUAUGGCAAAGUAGCCu 2 17 435 456 [mm9:8:96496611-96496632:-] 0.4314 148 7 -15.11 -0.2967 MIMAT0004670 mmu-miR-7a* 23802 Amfr auACCGUC-UGACACUAAACAAc || || :: | ||||||| gcUGAGAGCGUAGCAAUUUGUUu 2 21 1302 1324 [mm9:8:96495743-96495765:-] 0.7257 143 7 -6.31 -0.9675 MIMAT0004704 mmu-miR-335-3p 23802 Amfr ccaGUCC-UCGUUAUUACUUUUu |||| ||| ||||||| uucCAGGCUGCA--CAUGAAAAu 2 20 1540 1560 [mm9:8:96495507-96495527:-] 0.4802 147 7 -13.13 -0.1402 MIMAT0001090 mmu-miR-409-3p 23802 Amfr uccccAAGUGGC---UCGUUGUAAg ||:|::| ||||||| | uuguuUUUAUUGUAAAGCAACAAUa 2 18 1319 1343 [mm9:8:96495724-96495748:-] 0.7257 124 0 -11.40 -0.1187 MIMAT0003388 mmu-miR-376b* 23802 Amfr auUGGUAUCUU-C--CUUA-UAGGUg | || ||:| | |||| ||||| gaAACAGAGGAUGUUGAAUAAUCCAc 2 21 915 940 [mm9:8:96496127-96496152:-] 0.5599 122 0 -15.31 -0.3437 MIMAT0001093 mmu-miR-411* 23802 Amfr ccaaucaccuggcacAAUGUAu |||||| aaaguuaaauguauuUUACAUa 2 8 1128 1149 [mm9:8:96495918-96495939:-] 0.7257 120 6 -9.26 -0.1687 MIMAT0002107 mmu-miR-466a-3p 23802 Amfr agaauacacacgcacaUACAUAu |||||| uuauuggcaaaguuaaAUGUAUu 2 8 1120 1142 [mm9:8:96495925-96495947:-] 0.7257 120 6 -5.66 -0.1909 MIMAT0002108 mmu-miR-467a-1* 23802 Amfr cacauccacacacaUACAUAua |||||| auuggcaaaguuaaAUGUAUuu 3 9 1122 1143 [mm9:8:96495924-96495945:-] 0.7257 120 0 -4.36 -0.1709 MIMAT0002889 mmu-miR-532-5p 23802 Amfr ugCCAGGAUGUGAGUUCCGUAc | |||| : ||||||| uuGAUCCUUGGAAAAAGGCAUg 2 21 775 796 [mm9:8:96496271-96496292:-] 0.5599 148 7 -19.85 -0.1427 MIMAT0005295 mmu-miR-376c* 23802 Amfr auUUGUAUCUU-C--CUUA-UAGGUg |||| ||:| | |||| ||||| gaAACAGAGGAUGUUGAAUAAUCCAc 2 21 915 940 [mm9:8:96496127-96496152:-] 0.5599 130 0 -17.63 -0.3437 MIMAT0003186 mmu-miR-369-3p 23802 Amfr uuUCUAGUUGGUACAUAAUAa :|| ||:| ||||||| ugGGAAAAAUCCAGUAUUAUc 2 20 1094 1114 [mm9:8:96495953-96495973:-] 0.7257 155 7 -11.33 -1.0388 MIMAT0004790 mmu-miR-503* 23802 Amfr gguccgucaccuuUGUUAUGAg ::|||||| aauuuaauccuuuGUAAUACUu 2 10 141 162 [mm9:8:96496905-96496926:-] 0.7470 125 6 -8.00 -0.1003 MIMAT0003373 mmu-miR-302b* 23802 Amfr ucUUUCGUAA-GGGUACAAUUUca ||| :||| | | |||||| uaAAAUUAUUGGCAAAGUUAAAug 3 22 1115 1138 [mm9:8:96495929-96495952:-] 0.7257 140 0 -5.29 -0.1936 MIMAT0003375 mmu-miR-302c* 23802 Amfr cguccauuggGGUACAAUUUcg | | |||||| aaauuauuggCAAAGUUAAAug 3 13 1117 1138 [mm9:8:96495929-96495950:-] 0.7257 124 0 -6.35 -0.1991 MIMAT0004820 mmu-miR-744* 23802 Amfr uccaacuccaaucacCGUUGUc |||||| uguuuuuauuguaaaGCAACAa 2 8 1320 1341 [mm9:8:96495726-96495747:-] 0.7257 120 6 -6.18 -0.2763 MIMAT0003896 mmu-miR-763 23802 Amfr cggugaccaaGAAGGGU-CGACc |||:||| |||| ucuuugacacCUUUCCAGGCUGc 2 13 1528 1550 [mm9:8:96495517-96495539:-] 0.4576 120 0 -16.52 -0.2586 MIMAT0004823 mmu-miR-666-3p 23802 Amfr ucgUCCGCUAGUG--C-GACGUCGg :|||| ||:| | ||||||| cugGGGCGCUCGCCUGCCUGCAGCa 2 20 279 303 [mm9:8:96496764-96496788:-] 0.6115 157 7 -25.83 -0.1562 MIMAT0003897 mmu-miR-759 23802 Amfr caguuuuaacaaacGUGAGACg ||||||| ggcuucacuuccguCACUCUGg 2 9 644 665 [mm9:8:96496402-96496423:-] 0.6197 140 7 -11.73 -0.1386 MIMAT0003459 mmu-miR-682 23802 Amfr gucugaaguGACACUGACGUc ||| ||||||| uguggagacCUGCGACUGCAu 2 13 74 94 [mm9:8:96496973-96496993:-] 0.6402 152 7 -18.03 -0.1099 MIMAT0003461 mmu-miR-683 23802 Amfr cucCUGUGUCGAAUGUCGUCc ||:|:| ||||||| uuuGAUAUAAACCACAGCAGa 2 19 322 342 [mm9:8:96496725-96496745:-] 0.4691 150 7 -14.83 -0.4099 MIMAT0003464 mmu-miR-686 23802 Amfr agaaguggcagacccUUCGUUa |||||| uuuguuuuuauuguaAAGCAAc 2 8 1318 1339 [mm9:8:96495728-96495749:-] 0.7257 120 6 -12.56 -0.1896 MIMAT0003469 mmu-miR-690 23802 Amfr aaaccaacacucggaUCGGAAa |||||| aauaaaucuuucaaaAGCCUUa 2 8 1223 1244 [mm9:8:96495823-96495844:-] 0.7257 120 6 -8.12 -0.1586 MIMAT0003476 mmu-miR-669b 23802 Amfr uguacguguacguguGUUUUGa |||||| uuuuuuuuaauguuuCAAAACa 2 8 1052 1073 [mm9:8:96495994-96496015:-] 0.6303 120 6 -7.34 -0.2975 MIMAT0003478 mmu-miR-467b* 23802 Amfr cacaaccacacacaUACAUAua |||||| auuggcaaaguuaaAUGUAUuu 3 9 1122 1143 [mm9:8:96495924-96495945:-] 0.7257 120 0 -7.56 -0.1709 MIMAT0004827 mmu-miR-297b-3p 23802 Amfr auACCCAUACACACAUACAUAu ||| | || | |||||| auUGGCAAAGU-UAAAUGUAUu 2 21 1122 1142 [mm9:8:96495925-96495945:-] 0.7257 122 6 -5.82 -0.1891 MIMAT0003487 mmu-miR-697 23802 Amfr agaggUGUCCUGG--UCCUACAa ||:| | | ||||||| auuaaACGGAAACAGAGGAUGUu 2 17 907 929 [mm9:8:96496138-96496160:-] 0.5599 147 7 -17.15 -0.1510 MIMAT0003493 mmu-miR-703 23802 Amfr aagaaaggaagACUUCCAAAa | ||||||| gucccauuggaUUAAGGUUUu 2 11 1031 1051 [mm9:8:96496016-96496036:-] 0.6303 142 7 -12.83 -1.1663 MIMAT0003506 mmu-miR-715 23802 Amfr gugcGCCCCCACACGUGCCUc :|| | ||||||| cagcUGGAAGGAAGCACGGAu 2 18 363 383 [mm9:8:96496684-96496704:-] 0.4691 141 7 -17.65 -0.1534 MIMAT0003508 mmu-miR-501-5p 23802 Amfr aaAGUGGGUCCCUGUUUCCUAa | | : | || ||||||| gaUAAGUAACUGAGAAAGGAUa 2 21 1171 1192 [mm9:8:96495875-96495896:-] 0.7257 148 7 -9.60 -0.8875 MIMAT0004237 mmu-miR-742 23802 Amfr aaaugggUCGUACCACC-GAAAg ||||| |||| |||| ugcauaaAGCAU-GUGGUCUUUa 2 16 101 122 [mm9:8:96496945-96496966:-] 0.7470 125 0 -16.02 -0.8704 MIMAT0004842 mmu-miR-879 23802 Amfr ccgaAUCUCGA---UAUUCGGAGa || | || | ||||||: ucaaUAAAUCUUUCAAAAGCCUUa 2 18 1221 1244 [mm9:8:96495823-96495846:-] 0.7257 128 0 -8.18 -0.1215 MIMAT0004863 mmu-miR-220 23802 Amfr uucACAGACUGUGACACCACc | ||| ::| ||||||| aaaUCUCUUGUAGUGUGGUGu 2 19 1354 1374 [mm9:8:96495693-96495713:-] 0.5327 158 7 -15.04 -0.1281 MIMAT0004864 mmu-miR-297a* 23802 Amfr auACCCAUACACACAUACAUAu ||| | || | |||||| auUGGCAAAGU-UAAAUGUAUu 2 21 1122 1142 [mm9:8:96495925-96495945:-] 0.7257 122 6 -5.82 -0.1891 MIMAT0004866 mmu-miR-297c* 23802 Amfr auACCCAUACACACAUACAUAu ||| | || | |||||| auUGGCAAAGU-UAAAUGUAUu 2 21 1122 1142 [mm9:8:96495925-96495945:-] 0.7257 122 6 -5.82 -0.1891 MIMAT0004867 mmu-miR-327 23802 Amfr uaGGAGUACGGGGAGUUCa || |||| ||||||| auCCACAUG--CCUCAAGc 2 18 935 951 [mm9:8:96496116-96496132:-] 0.5599 154 7 -19.76 -0.1218 MIMAT0004876 mmu-miR-466b-3p 23802 Amfr agaauacacacgcacaUACAUAu |||||| uuauuggcaaaguuaaAUGUAUu 2 8 1120 1142 [mm9:8:96495925-96495947:-] 0.7257 120 6 -5.66 -0.1909 MIMAT0005453 mmu-miR-466b-3-3p 23802 Amfr agaauacacacgcacaUACAUAa |||||| uuauuggcaaaguuaaAUGUAUu 2 8 1120 1142 [mm9:8:96495925-96495947:-] 0.7257 120 6 -6.39 -0.1909 MIMAT0004878 mmu-miR-466c-3p 23802 Amfr agaauacacacgcacaUACAUAu |||||| uuauuggcaaaguuaaAUGUAUu 2 8 1120 1142 [mm9:8:96495925-96495947:-] 0.7257 120 6 -5.66 -0.1909 MIMAT0004880 mmu-miR-466e-3p 23802 Amfr agaauacacacgcacaUACAUAu |||||| uuauuggcaaaguuaaAUGUAUu 2 8 1120 1142 [mm9:8:96495925-96495947:-] 0.7257 120 6 -5.66 -0.1909 MIMAT0004887 mmu-miR-467d* 23802 Amfr cacauccacacacaUACAUAua |||||| auuggcaaaguuaaAUGUAUuu 3 9 1122 1143 [mm9:8:96495924-96495945:-] 0.7257 120 0 -4.36 -0.1709 MIMAT0004890 mmu-miR-509-5p 23802 Amfr uaCUAACGGUGUAAGACCUCAu | ||| :|| ||||||| ugGUUUGGUAC---CUGGAGUa 2 21 541 559 [mm9:8:96496508-96496526:-] 0.5419 148 7 -19.00 -0.3891 MIMAT0004890 mmu-miR-509-5p 23802 Amfr uacUAACGGUGUA-AGACC-UCAu ||| ::|||| |||| ||| uguAUU-UUACAUACCUGGAAGUu 2 20 1137 1159 [mm9:8:96495908-96495930:-] 0.7257 120 0 -12.82 -1.0082 MIMAT0004931 mmu-miR-466d-3p 23802 Amfr gauacacacgcacaUACAUAu |||||| auuggcaaaguuaaAUGUAUu 2 8 1122 1142 [mm9:8:96495925-96495945:-] 0.7257 120 6 -4.79 -0.1909 MIMAT0004940 mmu-miR-511 23802 Amfr acucACGUCUCGUUUUCCGUa | | :| |||||||| uugaUCCUUGGAAAAAGGCAu 2 18 775 795 [mm9:8:96496272-96496292:-] 0.5599 149 7 -11.83 -0.1247 MIMAT0005294 mmu-miR-467e* 23802 Amfr uauauccacacacaUACAUAua |||||| auuggcaaaguuaaAUGUAUuu 3 9 1122 1143 [mm9:8:96495924-96495945:-] 0.7257 120 0 -4.36 -0.1709 MIMAT0005854 mmu-miR-467g 23802 Amfr uauauacacacacaUACAUAu |||||| auuggcaaaguuaaAUGUAUu 2 8 1122 1142 [mm9:8:96495925-96495945:-] 0.7257 120 6 -4.42 -0.1891 MIMAT0007872 mmu-miR-1906 23802 Amfr ucgGGACG--GA-GU-CCGACGACGu ||||| || || |||||||| agaCCUGCGACUGCAUUGCUGCUGCa 2 20 79 104 [mm9:8:96496963-96496988:-] 0.6402 156 7 -26.47 -0.3793 MIMAT0007876 mmu-miR-1907 23802 Amfr ugGAGGUCUAGGAGACGACGAg || |: | | :||||||| acCUGCGACUGCAUUGCUGCUg 2 21 81 102 [mm9:8:96496965-96496986:-] 0.6402 152 7 -20.64 -0.1750 MIMAT0007877 mmu-miR-1894-5p 23802 Amfr ucucCGUCCACCAUCCCCU-CUc |: || |||||||| || acuuGUUGGGAGUAGGGGACGAg 2 19 240 262 [mm9:8:96496805-96496827:-] 0.6115 126 0 -25.05 -0.3283 MIMAT0009399 mmu-miR-1935 23802 Amfr ucucuAGGCGGUCGGA-GACGGa |:| :|||||| ||||| ucaccUUCCUCAGCCUCCUGCCc 2 18 8 30 [mm9:8:96497037-96497059:-] 0.3671 133 0 -24.66 -0.2647 MIMAT0009409 mmu-miR-1944 23802 Amfr uuAGUCUUGAACUGUAAGUCGUGU-CUc | | | ||| || | ||||| || uuUGACACCUUUCCAGGCUGCACAUGAa 2 26 1530 1557 [mm9:8:96495510-96495537:-] 0.4576 125 0 -14.23 -0.5551 MIMAT0009413 mmu-miR-1947 23802 Amfr guCGUGAG-UCGAUCGAG-CAGGa || ||| ||| : ||| |||| auGC-CUCAAGCAGACUCGGUCCc 2 21 941 963 [mm9:8:96496104-96496126:-] 0.5827 121 0 -20.47 -0.3098 MIMAT0009419 mmu-miR-669m 23802 Amfr uauacaaacacaccUACAUAua |||||| auuggcaaaguuaaAUGUAUuu 3 9 1122 1143 [mm9:8:96495924-96495945:-] 0.7257 120 0 -4.19 -0.1709 MIMAT0009428 mmu-miR-1956 23802 Amfr aggcgacugaGUCGGGACCUga || |||||| auguauuuuaCAUACCUGGAag 3 13 1136 1157 [mm9:8:96495910-96495931:-] 0.7257 124 0 -15.57 -0.2516 MIMAT0009431 mmu-miR-1958 23802 Amfr ugaAUGACGAAG-GUGAAAGGAu |:| || || : ||||||| ggcUGCCGCCUCUUCCUUUCCUu 2 20 696 718 [mm9:8:96496349-96496371:-] 0.3845 154 7 -18.14 -0.1112 MIMAT0009433 mmu-miR-1960 23802 Amfr ucgggagaagauugUCGUGACc ||||||| uacuuggaggaggaAGCACUGa 2 9 1501 1522 [mm9:8:96495545-96495566:-] 0.4508 140 7 -12.78 -0.1725 MIMAT0009436 mmu-miR-1963 23802 Amfr cuUCCGGAGUAC--UAGAG-CAGGGu | |||||| | : ||| ||||| acAUGCCUCAAGCAGACUCGGUCCCa 2 22 939 964 [mm9:8:96496103-96496128:-] 0.5827 128 0 -25.41 -0.5655 MIMAT0009441 mmu-miR-1968 23802 Amfr ucAGGUGGUAGGAAUUGU-CGACGu |::: || |||| || ||||| ucUUUGACA-CCUUUCCAGGCUGCa 2 23 1528 1551 [mm9:8:96495516-96495539:-] 0.4576 124 0 -20.28 -0.3173 MIMAT0009444 mmu-miR-1970 23802 Amfr guUUCGGAUAGGGGUCACUGUGu || || |:|:: ||||||: guAAUACU-UUCUUUGUGACAUu 2 22 154 175 [mm9:8:96496892-96496913:-] 0.7470 139 0 -15.85 -0.1014 MIMAT0011214 mmu-miR-2138 23802 Amfr uaAGGCGGUUCGGG----CAAGGGAa ||| : :||||| ||||||| ugUCCCUGGAGCCCUUGAGUUCCCUg 2 21 861 886 [mm9:8:96496181-96496206:-] 0.5599 155 7 -24.48 -0.2135 MIMAT0011215 mmu-miR-2139 23802 Amfr cgUCAAUGGUCCUCGUCGCGUCGa || ::||| || ||||||| acAGCAGUCAGAAGGUGCGCAGCa 2 23 401 424 [mm9:8:96496643-96496666:-] 0.4143 162 7 -24.90 -0.1529 MIMAT0011222 mmu-miR-2146 23802 Amfr guguaccuugggAAGAGGUg ||||||| gaucggcucaaaUUCUCCAc 2 9 965 984 [mm9:8:96496083-96496102:-] 0.6055 140 7 -16.13 -0.4728 MIMAT0015640 mmu-miR-3470a 23802 Amfr ggucggaccAGAUGUUUCAcu |: :|||||| cuaaaauuaUUGGCAAAGUua 3 13 1114 1134 [mm9:8:96495933-96495953:-] 0.7257 124 0 -7.83 -0.2219 MIMAT0015644 mmu-miR-1186b 23802 Amfr caccacguacggAAAUUAGGGu ||||||||: acagcugacaaaUUUAAUCCUu 2 11 131 152 [mm9:8:96496915-96496936:-] 0.7470 134 0 -12.10 -0.1345 MIMAT0000124 mmu-miR-15b 23802 Amfr acaUUUGG-UACU-AC---ACGACGAu |:||| : || || ||||||| uggAGACCUGCGACUGCAUUGCUGCUg 2 20 76 102 [mm9:8:96496965-96496991:-] 0.6402 144 7 -17.86 -0.1750 MIMAT0000127 mmu-miR-29b 23802 Amfr uuGUGACUAAAGU-UUACCACGAu |||| ||| ||||||| uuCACUUCCGUCACUCUGGUGCUc 2 22 647 670 [mm9:8:96496397-96496420:-] 0.6197 148 7 -17.31 -0.1258 MIMAT0000144 mmu-miR-132 23802 Amfr gcuggUACCGACAUCUGACAAu | | :| ||||||||| ccuggAAGUUUUUAGACUGUUg 2 18 1150 1171 [mm9:8:96495896-96495917:-] 0.7257 157 7 -18.45 -1.1582 MIMAT0000145 mmu-miR-133a 23802 Amfr gucgaccaacuuccCCUGGUUu ||||||| gcccuuaacauucaGGACCAAu 2 9 603 624 [mm9:8:96496443-96496464:-] 0.4942 140 7 -11.04 -0.2833 MIMAT0000153 mmu-miR-141 23802 Amfr ggUAGAAAUGGUCU-GUC-ACAAu || | |||| | ||| |||| ugAUAUAAACCACAGCAGAUGUUg 2 21 324 347 [mm9:8:96496720-96496743:-] 0.4691 123 0 -12.62 -0.1587 MIMAT0000160 mmu-miR-150 23802 Amfr guGACCAUGUUCCCAACCCUCu |||| || |||||||| gaCUGG-AC--UUGUUGGGAGu 2 21 234 252 [mm9:8:96496815-96496833:-] 0.6115 147 7 -23.82 -0.1694 MIMAT0000160 mmu-miR-150 23802 Amfr gugACCAUGUUCCCAACCCUcu ||||| |||||| uuaUGGUAGUCCUUUUGGGAaa 3 20 1079 1100 [mm9:8:96495967-96495988:-] 0.6780 127 0 -12.99 -0.1383 MIMAT0000209 mmu-miR-129-5p 23802 Amfr cguucgggUCUG-GCGUUUUUc :||| ||||||| ggaguaggGGACGAGCAAAAAg 2 14 248 269 [mm9:8:96496798-96496819:-] 0.6115 144 7 -17.30 -0.1297 MIMAT0000211 mmu-miR-182 23802 Amfr gccacacucaagaUGGUAACGGUUu |::|||| ||| aguauuaucuaaaAUUAUUGGCAAa 2 13 1106 1130 [mm9:8:96495937-96495961:-] 0.7257 120 0 -10.88 -0.1141 MIMAT0000219 mmu-miR-24 23802 Amfr gacAAGGAC-GACUUGACUCGGu ||| | | | ||||||| acaUUCAGGACCAAUCUGAGCCc 2 20 610 632 [mm9:8:96496435-96496457:-] 0.4942 146 7 -16.71 -0.1432 MIMAT0000225 mmu-miR-195 23802 Amfr cgguuaUAAAGACACGACGAu | | | ||||||| ccugcgACUGCAUUGCUGCUg 2 16 82 102 [mm9:8:96496965-96496985:-] 0.6402 143 7 -14.99 -0.1750 MIMAT0000233 mmu-miR-200b 23802 Amfr aguaguaaugguccGUCAUAAu ||||||| uuuugggaaaaaucCAGUAUUa 2 9 1091 1112 [mm9:8:96495955-96495976:-] 0.7257 140 7 -8.68 -1.1520 MIMAT0000235 mmu-miR-202-3p 23802 Amfr agaaggguacgcgaUAUGGAga |||||| uaaauguauuuuacAUACCUgg 3 9 1133 1154 [mm9:8:96495913-96495934:-] 0.7257 120 0 -6.86 -0.1130 MIMAT0000236 mmu-miR-203 23802 Amfr gaUCACCAGGAUU-UGUAAAGUg :||| ||| :|||||| uaGGUGAAGAUAAUUUAUUUCAa 2 21 1202 1224 [mm9:8:96495843-96495865:-] 0.7257 131 6 -10.23 -0.4005 MIMAT0000513 mmu-miR-19b 23802 Amfr agucaaaacguaccuaAACGUGu |||||| cuuccccuuagaaacaUUGCACa 2 8 179 201 [mm9:8:96496866-96496888:-] 0.6792 120 6 -8.77 -0.1084 MIMAT0000526 mmu-miR-15a 23802 Amfr guguUUGGUAAUACACGACGAu :||:: || ||||||| cugcGACUG-CAU-UGCUGCUg 2 19 83 102 [mm9:8:96496965-96496984:-] 0.6402 142 7 -14.58 -0.1610 MIMAT0000527 mmu-miR-16 23802 Amfr gcgguuauaaaugcACGACGAu ||||||| accugcgacugcauUGCUGCUg 2 9 81 102 [mm9:8:96496965-96496986:-] 0.6402 140 7 -14.77 -0.1750 MIMAT0000531 mmu-miR-22 23802 Amfr uguCAAGAAGUUG---ACC-GUCGAa | ||||:|:: ||| ||||| uguGGUCUUUAGUGUGUGGACAGCUg 2 20 112 137 [mm9:8:96496930-96496955:-] 0.7470 122 0 -15.89 -1.0830 MIMAT0000535 mmu-miR-29a 23802 Amfr auuggcuaaagucuACCACGAu ||||||| cacuuccgucacucUGGUGCUc 2 9 649 670 [mm9:8:96496397-96496418:-] 0.6197 140 7 -16.05 -0.1258 MIMAT0000536 mmu-miR-29c 23802 Amfr auuggcuaaaguuuACCACGAu ||||||| cacuuccgucacucUGGUGCUc 2 9 649 670 [mm9:8:96496397-96496418:-] 0.6197 140 7 -15.96 -0.1258 MIMAT0000548 mmu-miR-322 23802 Amfr agguuUUGUACUUAACGACGAc :|| || ||||||||| ccugcGAC-UGCAUUGCUGCUg 2 18 82 102 [mm9:8:96496965-96496985:-] 0.6402 159 7 -21.16 -0.1750 MIMAT0000651 mmu-miR-19a 23802 Amfr agucaaaacguaucuaAACGUGu |||||| cuuccccuuagaaacaUUGCACa 2 8 179 201 [mm9:8:96496866-96496888:-] 0.6792 120 6 -10.09 -0.1084 MIMAT0000652 mmu-miR-25 23802 Amfr agucUGGCUCUGUUCA-CGUUAc :|:|||| : || ||||| uuuuGCUGAGA-GCGUAGCAAUu 2 19 1298 1319 [mm9:8:96495748-96495769:-] 0.7257 120 0 -14.09 -0.8539 MIMAT0000657 mmu-miR-200c 23802 Amfr agguaguaaugggccGUCAUAAu ||||||| cuuuugggaaaaaucCAGUAUUa 2 9 1090 1112 [mm9:8:96495955-96495977:-] 0.7257 140 7 -10.51 -1.1520 MIMAT0000659 mmu-miR-212 23802 Amfr accggcaCUGACCUCUGACAAu | :| |||||||| ccuggaaGUUUUUAGACUGUUg 2 16 1150 1171 [mm9:8:96495896-96495917:-] 0.7257 147 7 -16.84 -1.1582 MIMAT0000661 mmu-miR-214 23802 Amfr ugaCGGACAGACAC-GGACGACa |||| | || |||||| aaaGCCUUACCUUGAACUGCUGu 2 20 1236 1258 [mm9:8:96495809-96495831:-] 0.7257 122 6 -19.13 -0.1422 MIMAT0000665 mmu-miR-223 23802 Amfr accccauaAACUGU---UUGACUgu ||||:| |||||| uuagacugUUGAUAAGUAACUGAga 3 15 1161 1185 [mm9:8:96495882-96495906:-] 0.7257 129 0 -10.96 -0.1004 MIMAT0000677 mmu-miR-7a 23802 Amfr uguuguuuuaGUGAUCAGAAGGu ||:| |||||| uucuuugugaCAUUUCUCUUCCc 2 14 162 184 [mm9:8:96496883-96496905:-] 0.7470 121 6 -12.27 -0.1243 MIMAT0000678 mmu-miR-7b 23802 Amfr uguuguuuuaguguucAGAAGGu |||||| uucuuugugacauuucUCUUCCc 2 8 162 184 [mm9:8:96496883-96496905:-] 0.7470 120 6 -9.75 -0.1243 MIMAT0000769 mmu-miR-133b 23802 Amfr aucgaccaacuuccCCUGGUUu ||||||| gcccuuaacauucaGGACCAAu 2 9 603 624 [mm9:8:96496443-96496464:-] 0.4942 140 7 -11.04 -0.2833 MIMAT0001095 mmu-miR-370 23802 Amfr ugguccaAGGUGGGGUCGUCCg ||:| |||||||| cuggaccUCUAGACCAGCAGGa 2 16 502 523 [mm9:8:96496544-96496565:-] 0.5419 155 7 -23.49 -0.2229 MIMAT0001537 mmu-miR-429 23802 Amfr ugccguaauggucuGUCAUAAu ||||||| uuuugggaaaaaucCAGUAUUa 2 9 1091 1112 [mm9:8:96495955-96495976:-] 0.7257 140 7 -11.41 -1.1520 MIMAT0001542 mmu-miR-449a 23802 Amfr ugguCGA-UUGUUAUGUG-ACGGu |:| ||:||| ||| |||| ggauGUUGAAUAAUCCACAUGCCu 2 19 923 946 [mm9:8:96496121-96496144:-] 0.5599 129 0 -13.94 -0.1839 MIMAT0003168 mmu-miR-543 23802 Amfr uucuucacguggcgcUUACAAa |||||| agguuuuuuuuuuuuAAUGUUu 2 8 1045 1066 [mm9:8:96496001-96496022:-] 0.6303 120 6 -4.12 -0.1111 MIMAT0003169 mmu-miR-539 23802 Amfr ugugugguuccuauUAAAGAGg ||||||| acuuucuuugugacAUUUCUCu 2 9 159 180 [mm9:8:96496887-96496908:-] 0.7470 140 7 -9.12 -0.8816 MIMAT0003182 mmu-miR-494 23802 Amfr cuCCAAAGGGCACA---UACAAAGu |||||::: | | ||||||| aaGGUUUUUUUUUUUUAAUGUUUCa 2 21 1044 1068 [mm9:8:96495999-96496023:-] 0.6303 155 7 -15.89 -1.2875 MIMAT0003893 mmu-miR-761 23802 Amfr acacagucaaaguggGACGACg |||||| aagccuuaccuugaaCUGCUGu 2 8 1237 1258 [mm9:8:96495809-96495830:-] 0.7257 120 6 -15.13 -0.1422 MIMAT0003450 mmu-miR-488 23802 Amfr cuGGUUCUUUGUCGGAAAGUu :||| ||| :|||||| uuUCAAUAAA---UCUUUCAa 2 20 1219 1236 [mm9:8:96495831-96495848:-] 0.7257 135 6 -9.68 -0.2534 MIMAT0003453 mmu-miR-497 23802 Amfr auguUUGGUGUCACACGACGAc :||::|| | ||||||| cugcGACUGCA-U-UGCUGCUg 2 19 83 102 [mm9:8:96496965-96496984:-] 0.6402 150 7 -19.74 -0.1594 MIMAT0003460 mmu-miR-449c 23802 Amfr gguCGA-UCGUUACGUG-ACGGa |:| | :||| ||| |||| gauGUUGAAUAAUCCACAUGCCu 2 19 924 946 [mm9:8:96496121-96496143:-] 0.5599 121 0 -14.22 -0.1873 MIMAT0004869 mmu-miR-421 23802 Amfr cgcgggUUAAUUA-CAGACAACUa |:|| | | ||||||| ccuggaAGUUUUUAGACUGUUGAu 2 18 1150 1173 [mm9:8:96495894-96495917:-] 0.7257 148 7 -12.50 -1.0711 MIMAT0004896 mmu-miR-590-3p 23802 Amfr ugaUCGAAUAUGUAUUUUAAu ||: | ||: ||||||| uccAGUAU-UAUCUAAAAUUa 2 19 1103 1122 [mm9:8:96495945-96495964:-] 0.7257 152 7 -6.72 -1.1925 MIMAT0004899 mmu-miR-92b 23802 Amfr ccucCGGCCCUGCUCA-CGUUAu ||:| || | || ||||| uuuuGCUGAGA-GCGUAGCAAUu 2 19 1298 1319 [mm9:8:96495748-96495769:-] 0.7257 120 0 -13.12 -0.8609 MIMAT0004936 mmu-miR-873 23802 Amfr uccucugaguguuCAAGGACg ||||||| guucccugcuuuuGUUCCUGu 2 9 879 899 [mm9:8:96496168-96496188:-] 0.5599 140 7 -13.39 -0.3645 MIMAT0004936 mmu-miR-873 23802 Amfr ucCUCUGAGUGUUCAA-GGACg ||| | | ::|||| |||| ugGAG-CCCUUGAGUUCCCUGc 2 20 867 887 [mm9:8:96496180-96496200:-] 0.5599 121 0 -20.35 -0.3137 MIMAT0004943 mmu-miR-653 23802 Amfr guCAUCUCU--AACAAAGUUGUg | ||| | || ||||||:| guGAAGAUAAUUUAUUUCAAUAa 2 20 1205 1227 [mm9:8:96495840-96495862:-] 0.7257 142 0 -9.13 -0.1137

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G038271 Amfr Mus musculus 23802 19536157 0 0 R54341; MOUSE$AMFR_01; Binding factors: mmu-miR-153-3p // 0 0 R54342; MOUSE$AMFR_02; Binding factors: mmu-miR-106a-5p , mmu-miR-17-5p , mmu-miR-20b-5p , mmu-miR-93-5p // 0 0 R54343; MOUSE$AMFR_03; Binding factors: mmu-let-7a-5p , mmu-let-7b-5p , mmu-let-7c-5p , mmu-let-7e-5p , mmu-let-7f-5p , mmu-let-7g-5p , mmu-let-7i-5p , mmu-miR-672-5p , mmu-miR-98-5p // 0 0 R54344; MOUSE$AMFR_04; Binding factors: mmu-miR-128-3p , mmu-miR-27a-3p , mmu-miR-27b-3p // 0 0 R54345; MOUSE$AMFR_05; Binding factors: mmu-let-7a-5p , mmu-let-7b-5p , mmu-let-7c-5p , mmu-let-7d-5p , mmu-let-7e-5p , mmu-let-7f-5p , mmu-let-7g-5p , mmu-let-7i-5p , mmu-miR-196a-5p , mmu-miR-196b-5p , mmu-miR-98-5p // 0 0 R54346; MOUSE$AMFR_06; Binding factors: mmu-miR-193a-3p , mmu-miR-193b-3p // 0 0 R54489; MOUSE$AMFR_07; Binding factors: mmu-miR-103-3p , mmu-miR-107-3p , mmu-miR-15a-5p , mmu-miR-15b-5p , mmu-miR-16-5p , mmu-miR-1907 , mmu-miR-195a-5p , mmu-miR-322-5p , mmu-miR-497a-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Amfr mmu-miR-1962 beg:8 end:25 pic:3' TACACAGGGTCACGGTCGGAGA 5'& ||. .||||||| &5' ------CCTTCC-TCAGCCTC- 3' Amfr mmu-miR-763 beg:626 end:646 pic:3' CGGTGACCAAGAAGGGTCGACC 5'& ||| | || ||||||||| &5' GCC-CAG--TC--CCCAGCTGG 3' Amfr mmu-miR-761 beg:56 end:75 pic:3' ACACAGTCAAAGTGGGACGACG 5'& ||||| . |||||||. &5' -----CAGTTCTG-CCTGCTGT 3' Amfr mmu-miR-125a-5p beg:560 end:578 pic:3' AGTGTCCAATTTCCCA-GAGTCCCT 5'& |.||| ||||||| &5' ---------AGAGGAAGCTCAGGG- 3' Amfr mmu-miR-125b-5p beg:562 end:578 pic:3' AGTGTTCAATCCCA-GAGTCCCT 5'& ||| ||||||| &5' ---------AGGAAGCTCAGGG- 3' Amfr mmu-miR-421 beg:1163 end:1174 pic:3' CGCGGGTTAATTACAGACAACTA 5'& |||||||| &5' ---------------CTGTTGAT 3' Amfr mmu-miR-682 beg:76 end:94 pic:3' GTCTGAAGTGACACTGACGTC 5'& |||| ||| ||||||| &5' -AGAC----CTGCGACTGCA- 3' Amfr mmu-miR-484 beg:423 end:434 pic:3' TAGCCCTCCCCTGACTCGGACT 5'& |||||||| &5' --------------GAGCCTGA 3' Amfr mmu-miR-129-5p beg:253 end:270 pic:3' CGTTCGGGTCTGG-CGTTTTTC 5'& .||| |||||||| &5' --------GGACGAGCAAAAAG 3' Amfr mcmv-miR-M23-2 beg:681 end:696 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& |||| |||||||| &5' --GCTT-------GCCCCCAT 3' Amfr mmu-miR-2139 beg:405 end:424 pic:3' CGTCAATGGTCCTCGTCGCGTCGA 5'& .||| || ||||||| &5' -------TCAGAAGGTGCGCAGC- 3' Amfr mmu-miR-133a beg:614 end:624 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& ||||||| &5' --------------GGACCAA- 3' Amfr mmu-miR-133b beg:614 end:624 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& ||||||| &5' --------------GGACCAA- 3' Amfr mmu-miR-193b beg:474 end:491 pic:3' TCGCCCTGAAACACCCGGTCAA 5'& |||| | ||||||| &5' ---GGGA----GGAGGCCAGT- 3' Amfr mmu-miR-193 beg:474 end:491 pic:3' TGACCCTGAAACATCCGGTCAA 5'& |||| | |||||||| &5' ---GGGAG---G-AGGCCAGT- 3' Amfr mmu-miR-501-3p beg:381 end:400 pic:3' GTTTAGGAACGGG-CCCACGTAA 5'& .|||| |||||||| &5' -----TCTTGGGGAGGGTGCAT- 3' Amfr mmu-miR-30bstar beg:49 end:62 pic:3' CTGCATTTGTAGGTGTAGGGTC 5'& || ..|||||| &5' -----------CC-TGTCCCAG 3' Amfr mmu-miR-30bstar beg:945 end:966 pic:3' CTGCATTTGTAGGTG-TAGGGTC 5'& ||.|| | | .|||||| &5' -----AAGCAGACTCGGTCCCAG 3' Amfr mmu-miR-2138 beg:867 end:886 pic:3' TAAGGCGGTTCGGG----CAAGGGAA 5'& .||||| ||||||| &5' --------GAGCCCTTGAGTTCCCT- 3' Amfr mmu-miR-873 beg:883 end:900 pic:3' TCCTCTGAGTGTTCAAGGACG 5'& .||. |||||||. &5' -----GCTTTT--GTTCCTGT 3' Amfr mcmv-miR-m01-1 beg:166 end:183 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& .||| |||||.|| &5' -----TGACAT--TTCTCTTC- 3' Amfr mcmv-miR-m01-2 beg:160 end:183 pic:3' TGGCAAGGTTGGGCT---AAGAGAAG 5'& ||.| . .|| |||||||| &5' ----TTTCTTTGTGACATTTCTCTTC 3' Amfr mcmv-miR-m01-3 beg:636 end:653 pic:3' AGCTCCGTTGTC-AGCGAAGTGGC 5'& ||| | |||||||. &5' ---------CAGCTGGCTTCACT- 3' Amfr mcmv-miR-m21-1 beg:871 end:887 pic:3' GCCGAACTTGCACAGGGGATA 5'& ||||| ||.||||. &5' ---CTTGA----GTTCCCTG- 3' Amfr mcmv-miR-M23-2 beg:622 end:641 pic:3' GGCGAACTGGCTC----CGGGGGTA 5'& |.||| |.||||| &5' --------CTGAGCCCAGTCCCCA- 3' Amfr mcmv-miR-M44-1 beg:1177 end:1193 pic:3' TGGCGCCGAGACCTTTTTCTAT 5'& ||| |||.|||| &5' ---------CTGAGAAAGGATA 3' Amfr mcmv-miR-m59-1 beg:824 end:841 pic:3' GACTGCCAGCTCC-GTGACGATT 5'& |||| |||||||.| &5' ---------GAGGACACTGCTGA 3' Amfr mcmv-miR-M87-1 beg:681 end:703 pic:3' CG-ACGGCGACGGCTGCCGACGGA 5'& || |||| || |.||||||| &5' GCTTGCC----CCCATGGCTGCC- 3' Amfr mghv-miR-M1-2 beg:1412 end:1427 pic:3' TTTCTCCCCCTCTCCCCCAGAC 5'& ||| |||||.| &5' -------GGGTT--GGGGTTT- 3' Amfr mmu-let-7a beg:929 end:949 pic:3' TTGATATGTTGGATG-ATGGAGT 5'& |.||.| || |.||||| &5' ------ATAATCCACATGCCTCA 3' Amfr mmu-let-7b beg:929 end:949 pic:3' TTGGTGTGTTGGATG-ATGGAGT 5'& |.||.| || |.||||| &5' ------ATAATCCACATGCCTCA 3' Amfr mmu-let-7c beg:929 end:949 pic:3' TTGGTATGTTGGATG-ATGGAGT 5'& |.||.| || |.||||| &5' ------ATAATCCACATGCCTCA 3' Amfr mmu-let-7e beg:929 end:949 pic:3' TTGATATGTTGGAGG-ATGGAGT 5'& |.||.| | |.||||| &5' ------ATAATCCACATGCCTCA 3' Amfr mmu-let-7g beg:927 end:949 pic:3' TTGACATGTTTGATG-ATGGAGT 5'& .|| |.|| | || |.||||| &5' --TTGAATAATCCACATGCCTCA 3' Amfr mmu-let-7i beg:929 end:949 pic:3' TTGTCGTGTTTGATG-ATGGAGT 5'& |.|| | || |.||||| &5' ------ATAATCCACATGCCTCA 3' Amfr mmu-miR-103 beg:449 end:472 pic:3' AGTATCGGGACATG--TTACGACGA 5'& .|||||. |||||||. &5' --GTAGCCTACGATTAAATGCTGT- 3' Amfr mmu-miR-106b beg:190 end:207 pic:3' TAGACGTGACAGTCGTGAAAT 5'& ||.|| || ||.|||| &5' -----CATTG-CA-CATTTTA 3' Amfr mmu-miR-106bstar beg:105 end:128 pic:3' CGTCGTTCATGGGT-GTCACGCC 5'& |||| ||. .| .||||.| &5' --AGCATGTGGTCTTTAGTGTG- 3' Amfr mmu-miR-107 beg:449 end:472 pic:3' ACTATCGGGACATG--TTACGACGA 5'& .|||||. |||||||. &5' --GTAGCCTACGATTAAATGCTGT- 3' Amfr mmu-miR-1 beg:155 end:178 pic:3' TATGTATGAAGAAATGTAAGGT 5'& |||| |||. |||||.| &5' ATACTTTCTTTGTGACATTTC- 3' Amfr mmu-miR-1186b beg:131 end:152 pic:3' CACCACGTAC-GG--AAATTAGGGT 5'& || || | ||||||||. &5' -----GC-TGACAAATTTAATCCT- 3' Amfr mmu-miR-1186b beg:765 end:783 pic:3' CACCACGTACGGAAATTAGGGT 5'& .||| |||.||||. &5' ------TATGGGTTTGATCCT- 3' Amfr mmu-miR-1186b beg:716 end:738 pic:3' CACCACGTACGGAAATTAGGGT 5'& |||| .||| |||||||.|| &5' -TGGT-TATGACTTTAATTCC- 3' Amfr mmu-miR-1198 beg:1003 end:1024 pic:3' GGTTCGGTCG-GTCCTTGTGTAT 5'& || .||| |.||||| &5' ----GCAATCATAGG-ATACATA 3' Amfr mmu-miR-125a-3p beg:272 end:295 pic:3' CCGAGGGTTCTTG-GAGTGGACA 5'& ||| | .| .| |||.|||| &5' GGCA-CTGGG-GCGCTCGCCTG- 3' Amfr mmu-miR-127star beg:633 end:651 pic:3' TAGTCTCGGGA---GACTCGAAGTC 5'& |.|| ||| |||||| &5' ------GTCCCCAGCTG-GCTTCA- 3' Amfr mmu-miR-129-5p beg:563 end:586 pic:3' CGTTCGGGT-CTGGCGTTTTTC 5'& | ||||.|| |.|.|||.|| &5' GGAAGCTCAGGGCTGCAGAA-- 3' Amfr mmu-miR-132 beg:1150 end:1172 pic:3' GCTGGTACCGAC----ATCTGACAAT 5'& ||| |||||||||. &5' ------TGGAAGTTTTTAGACTGTTG 3' Amfr mmu-miR-138star beg:434 end:456 pic:3' GGG---ACCACAACACTTCATCGGC 5'& || ||| |||||||| &5' CCACTATGGCA-----AAGTAGCC- 3' Amfr mmu-miR-142-3p beg:186 end:200 pic:3' AGGTATTTCATCCTTTGTGATGT 5'& ||||||.|.|| &5' ------------GAAACATTGCA 3' Amfr mmu-miR-145 beg:222 end:242 pic:3' TCCCTAAGGACC-CTTTTGACCTG 5'& |.|||| | .||||||| &5' ------TTCTGGTGTTGACTGGAC 3' Amfr mmu-miR-145 beg:235 end:260 pic:3' TCCCT-AAGGACCCTTTTGACCTG 5'& ||| || .|||||. |||| &5' --GGACTTGTTGGGAGTAGGGGAC 3' Amfr mmu-miR-146bstar beg:461 end:480 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& ||. || |.||||| &5' -----AATGCTGTGCTTAGGG- 3' Amfr mmu-miR-148a beg:1513 end:1523 pic:3' TGTTTCAAGACATCACGTGACT 5'& ||||||| &5' ---------------GCACTGA 3' Amfr mmu-miR-150 beg:232 end:252 pic:3' GTGACCATGTTCCCAACCCTCT 5'& ||||| || |||||||| &5' -ACTGG-ACTT--GTTGGGAG- 3' Amfr mmu-miR-152 beg:1513 end:1523 pic:3' GGTTCAAGACAGTACGTGACT 5'& ||||||| &5' --------------GCACTGA 3' Amfr mmu-miR-152 beg:80 end:97 pic:3' GGTTCAAGACAGT--ACGTGACT 5'& ||| |. ||||.|| &5' -------CTG-CGACTGCATTG- 3' Amfr mmu-miR-154 beg:441 end:458 pic:3' GCTTCCGTTGTGCCTATTGGAT 5'& ||||| .||.|||| &5' ----GGCAAA----GTAGCCTA 3' Amfr mmu-miR-15a beg:1238 end:1261 pic:3' GTGTTTGGTAATACACGACGAT 5'& | ||| |||||.|| &5' --CTTACCTTGAACTGCTGTTA 3' Amfr mmu-miR-16 beg:1248 end:1261 pic:3' GCGGTTATAAATGCACGACGAT 5'& || |||||.|| &5' -----------AC-TGCTGTTA 3' Amfr mmu-miR-17star beg:567 end:584 pic:3' GATGTTCACGGGAG-TGACGTCA 5'& ||.| .|||||| &5' --------GCTCAGGGCTGCAG- 3' Amfr mmu-miR-1839-3p beg:895 end:906 pic:3' CGACAACCATCTATTCATCCAGA 5'& ||.||||| &5' ---------------GTGGGTCT 3' Amfr mmu-miR-1839-5p beg:21 end:41 pic:3' GTTCTGGACAAGAT-AGATGGAA 5'& |||| ||||||| &5' -----CCTGCCCAGCTCTACCT- 3' Amfr mmu-miR-1894-3p beg:695 end:721 pic:3' GAGGGA--AGTGGGAGAGGGAACG 5'& || || || .|||.|||.||| &5' CTGCCGCCTCTTCCTTTCCTTTG- 3' Amfr mmu-miR-1894-5p beg:377 end:395 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& || ||||||.| &5' -------GGATCTTGGGGAGGG 3' Amfr mmu-miR-18astar beg:265 end:286 pic:3' GTCTTC-CTCGTGAATCCCGTCA 5'& ||||| |.|||| |.|||| &5' -AGAAGTGGGCAC-TGGGGC--- 3' Amfr mmu-miR-18astar beg:1361 end:1384 pic:3' GTCTT-CCTCGTGAATCCCGTCA 5'& .|| || |. .||||||| &5' TAGTGTGGTGTG---GGGGCAGT 3' Amfr mmu-miR-1903 beg:1494 end:1517 pic:3' ACAGAGT---CCTTCTTCTTCTTCC 5'& |||.|.| |||.||.|||| &5' TGTTTTACTTGGAGGAGGAAG---- 3' Amfr mmu-miR-1903 beg:551 end:571 pic:3' ACAGAGTCCT--TC-TTCTTCTTCC 5'& ||| || ||||.|||| &5' -------GGAGTAGAAAGAGGAAG- 3' Amfr mmu-miR-1906 beg:82 end:105 pic:3' TCGG-GACGGAGTCCGACGACGT 5'& || |||| ||||||||| &5' -GCGACTGCATT--GCTGCTGCA 3' Amfr mmu-miR-1906 beg:1242 end:1259 pic:3' TCGGGACGGAGTCCGACGACGT 5'& |||.. ||||||. &5' -------CCTTGAACTGCTGT- 3' Amfr mmu-miR-1907 beg:1241 end:1260 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& ||||. || ||||||.| &5' ACCTT--GAA---CTGCTGTT- 3' Amfr mmu-miR-1933-5p beg:679 end:700 pic:3' TTTGATTCTGGCTTGTGGTACTGA 5'& ||.|| .|| | |||||.|| &5' AAGCTT--GCC---C-CCATGGCT 3' Amfr mmu-miR-1935 beg:50 end:70 pic:3' TCTCTAGGC--GGTCGGAGACGGA 5'& |.| |||| .||||||| &5' ------CTGTCCCAG-TTCTGCCT 3' Amfr mmu-miR-1946b beg:421 end:447 pic:3' TTTTCGTACACGGTGGTGACGGGCCG 5'& |..||| || |||||||| .||| &5' AGGAGCCTGA-CCACCACTA--TGGC 3' Amfr mmu-miR-1948 beg:453 end:477 pic:3' GACATGCTC----ACGAGACGGATTT 5'& ||||| |||| |||.||. &5' ---TACGATTAAATGCTGTGCTTAG- 3' Amfr mmu-miR-1949 beg:515 end:534 pic:3' TTGATACGA-CTGTAGGACCATATC 5'& || |||| ||||.||| &5' ------GCAGGACA---TGGTGTAG 3' Amfr mmu-miR-1953 beg:700 end:718 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& |||| ||||||. &5' -----GCCTCTTC-CTTTCCT- 3' Amfr mmu-miR-1958 beg:694 end:718 pic:3' TGAATGACGAAGGT----GAAAGGAT 5'& .|||| || ||||||| &5' ----GCTGCCGCCTCTTCCTTTCCT- 3' Amfr mmu-miR-1960 beg:1500 end:1522 pic:3' TCGGGAGAAGATTG--TCGTGACC 5'& ||. .| ||||||| &5' ----CTTGGAGGAGGAAGCACTG- 3' Amfr mmu-miR-1961 beg:930 end:949 pic:3' AAGATTGA-TG-ATGGAGT 5'& |||. || |.||||| &5' ---TAATCCACATGCCTCA 3' Amfr mmu-miR-1968 beg:573 end:583 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& .|||||| &5' -----------------GGCTGCA 3' Amfr mmu-miR-196a beg:25 end:42 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& ||||.| ||||||| &5' CCCAGCT--------CTACCTA 3' Amfr mmu-miR-1981 beg:96 end:123 pic:3' CGGTGCAGATTCGG--GTCGGAAATG 5'& || | |||| ..|.||||| &5' GCTGCATA-AAGCATGTGGTCTTTA- 3' Amfr mmu-miR-1982star beg:9 end:33 pic:3' GGAGGGGTCCTGGGA-GGGTT 5'& |.|||.||| .||| ||||. &5' CTTCCTCAGCCTCCTGCCCAG 3' Amfr mmu-miR-1983 beg:1189 end:1209 pic:3' TCTTTTGTACGA-GGTCCACTC 5'& |||| || |.|||||| &5' ----AACAGGCGCCTAGGTGA- 3' Amfr mmu-miR-199a-3p beg:1241 end:1259 pic:3' ATTGGTTACACGTCTGATGACA 5'& ||| || |||.|||| &5' --ACCT---TGA--ACTGCTGT 3' Amfr mmu-miR-199a-5p beg:270 end:284 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& ||..||||||| &5' ------------TGGGCACTGGG 3' Amfr mmu-miR-199b beg:1241 end:1259 pic:3' ATTGGTTACACGTCTGATGACA 5'& ||| || |||.|||| &5' --ACCT---TGA--ACTGCTGT 3' Amfr mmu-miR-199b beg:822 end:840 pic:3' ATTGGTTACACGTC---TGATGACA 5'& || || |||.||| &5' ---------TGGAGGACACTGCTG- 3' Amfr mmu-miR-19a beg:184 end:202 pic:3' AGTCAAAACGTATCTA---AACGTGT 5'& |||| ||||||| &5' -----------TAGAAACATTGCACA 3' Amfr mmu-miR-206 beg:154 end:178 pic:3' GGTGTGTGAAGGAA----TGTAAGGT 5'& |.||||.||| |||||.| &5' ----ATACTTTCTTTGTGACATTTC- 3' Amfr mmu-miR-207 beg:1560 end:1572 pic:3' CTCCCTCCTCTCGGTCCTCTTCG 5'& |||.||||| &5' --------------AGGGGAAGC 3' Amfr mmu-miR-20b beg:155 end:177 pic:3' GATGGACGTGATACTCGTGAAAC 5'& |||.| | .|.||| ||.|| &5' -TACTTTCTTTGTGA-CATTT-- 3' Amfr mmu-miR-212 beg:1150 end:1172 pic:3' ACCGGCACTGACCT--------CTGACAAT 5'& ||||| |||||||. &5' ---------CTGGAAGTTTTTAGACTGTTG 3' Amfr mmu-miR-2132 beg:281 end:297 pic:3' GTAGCGCAGTTGTGGGCGG 5'& ||| | |.||.||| &5' ----GCG-CT-CGCCTGCC 3' Amfr mmu-miR-2135 beg:494 end:512 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& ||| || .||||||| &5' -----GGCGCCTGGACCTCT 3' Amfr mmu-miR-2140 beg:78 end:96 pic:3' TGGTGGTT-CTAGACGTGGA 5'& ||| || |||||.. &5' ---ACCTGCGA-CTGCATT- 3' Amfr mmu-miR-2146 beg:966 end:985 pic:3' GTGTACCTTGGG-AAGAGGTG 5'& || | |||||||| &5' -----GGCTCAAATTCTCCAC 3' Amfr mmu-miR-2146 beg:415 end:441 pic:3' GTGTA--CCTTGGGAA-GAGGTG 5'& |.|| |||.||. | |||| &5' CGCAGCAGGAGCCTGACCACCAC 3' Amfr mmu-miR-2183 beg:1412 end:1428 pic:3' TCCTCCAGTCCCCAAGTT 5'& .|||. ||||||.| &5' ---GGGTT-GGGGTTTA- 3' Amfr mmu-miR-21star beg:1242 end:1260 pic:3' CTGTCGGGTAGC-TGACGACAAC 5'& || |.| ||||||||| &5' ------CC-TTGAACTGCTGTT- 3' Amfr mmu-miR-220 beg:1356 end:1373 pic:3' TTCACAGACTGTGACACCACC 5'& ||| .| ||||||| &5' -----TCTTGTAGTGTGGTG- 3' Amfr mmu-miR-223 beg:120 end:141 pic:3' ACCCCATAAA-CTGTTTGACTGT 5'& ||.| ||| |.|||||| &5' ----GTGTGTGGAC-AGCTGACA 3' Amfr mmu-miR-23a beg:1351 end:1373 pic:3' CCTTTAGGGACCGTTACACTA 5'& |||||.|| |.|.||||.| &5' --AAATCTCTTGTAGTGTGGT 3' Amfr mmu-miR-23b beg:1352 end:1373 pic:3' CCATTAGGGACCGTTACACTA 5'& ||||.|| |.|.||||.| &5' ---AATCTCTTGTAGTGTGGT 3' Amfr mmu-miR-24 beg:1513 end:1526 pic:3' GACAAGGACGACTTGACTCGGT 5'& || |||||||. &5' --------GC---ACTGAGCT- 3' Amfr mmu-miR-24 beg:610 end:632 pic:3' GACAAGGACGACTT-GACTCGGT 5'& ||| | ||||||| &5' ---TTCAGGACCAATCTGAGCC- 3' Amfr mmu-miR-26a beg:1486 end:1509 pic:3' TCGGATAGGAC-CT-AATGAACTT 5'& || ||||| | |||||||.| &5' -GC---TCCTGTGTTTTACTTGGA 3' Amfr mmu-miR-26b beg:1488 end:1509 pic:3' TGGATAGGACTT--AATGAACTT 5'& ||||| |||||||.| &5' -----TCCTGTGTTTTACTTGGA 3' Amfr mmu-miR-291a-5p beg:707 end:723 pic:3' TCTCTCCCGGAGGTGAAACTAC 5'& |||. |||||.| &5' --------CCTTTCCTTTGGT- 3' Amfr mmu-miR-291b-5p beg:707 end:724 pic:3' CCTCTCCCGGAGGTGAAACTAG 5'& |||. |||||.|. &5' --------CCTTTCCTTTGGTT 3' Amfr mmu-miR-296-3p beg:16 end:37 pic:3' CCTCTCGGAGG-TGGGTTGGGAG 5'& ||||||| .||||.|.|| &5' ----AGCCTCCTGCCCAGCTCT- 3' Amfr mmu-miR-29a beg:651 end:670 pic:3' ATTGGCTAAAGTCT-ACCACGAT 5'& ||| ||| ||||||| &5' ---CCG---TCACTCTGGTGCT- 3' Amfr mmu-miR-29b beg:654 end:670 pic:3' TTGTGACTAAAGTTT-ACCACGAT 5'& ||| ||||||| &5' ----------TCACTCTGGTGCT- 3' Amfr mmu-miR-29c beg:651 end:670 pic:3' ATTGGCTAAAGTTT-ACCACGAT 5'& ||| ||| ||||||| &5' ---CCG---TCACTCTGGTGCT- 3' Amfr mmu-miR-302c beg:1498 end:1521 pic:3' GGTG-ACTTTGTACCTTCGTGAA 5'& .|| ||.|. | ||||||||| &5' -TACTTGGAGGA-GGAAGCACT- 3' Amfr mmu-miR-3072 beg:1360 end:1382 pic:3' TCTTCCGAAGGACCT--CCCCCGT 5'& |. . ||| ||||||| &5' -----GTAGTGTGGTGTGGGGGCA 3' Amfr mmu-miR-3099star beg:362 end:382 pic:3' GTTCCCGACCTTCCTTCGA-CC 5'& ||||||||||||| || &5' -----GCTGGAAGGAAGCACGG 3' Amfr mmu-miR-30estar beg:1165 end:1189 pic:3' CGACATTTGTAGGCTGACTTTC 5'& |||| .|.| |||||.| &5' -CTGTTGATAAGTAACTGAGA- 3' Amfr mmu-miR-31star beg:210 end:221 pic:3' CTACCGTTATACAACCGTATCGT 5'& |||||.|| &5' --------------GGCATGGC- 3' Amfr mmu-miR-31star beg:1304 end:1317 pic:3' CTACCGTTATACAAC-CGTATCGT 5'& | ||.||||| &5' --------------GAGCGTAGCA 3' Amfr mmu-miR-322 beg:80 end:103 pic:3' AGGTT-TTGTACTTAACGACGAC 5'& || .|| || |||||||||| &5' -CCTGCGAC-TGCATTGCTGCTG 3' Amfr mmu-miR-323-5p beg:419 end:439 pic:3' CGCTTGCGCGGTGCCTGGTGGA 5'& || . ||| ||||||| &5' GCAGGA--GCCT--GACCACC- 3' Amfr mmu-miR-324-3p beg:1365 end:1386 pic:3' TCGTCGTGGACCCCGTCACC 5'& | | . |||||||||| &5' -GTGGTGTG-GGGGCAGTGG 3' Amfr mmu-miR-326 beg:1437 end:1456 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& |||| |||.|||| ..| &5' ACTG--GGAGGGGCGTGG--- 3' Amfr mmu-miR-331-5p beg:537 end:556 pic:3' CCTAGGGACCCTGGTATGGATC 5'& |||| . .|||||.| &5' ------CTGGTTTGGTACCTGG 3' Amfr mmu-miR-335-3p beg:1540 end:1560 pic:3' CCAGTCCT-CGTTATTACTTTTT 5'& |||| ||| ||||||| &5' ---CAGGCTGCAC--ATGAAAA- 3' Amfr mmu-miR-339-3p beg:650 end:671 pic:3' GCCGAGACAGCGGCTCCGCGAGT 5'& .|| ||| |. ||.|||| &5' ---TTCCGTCACTCTGGTGCTC- 3' Amfr mmu-miR-33star beg:1360 end:1385 pic:3' CACTACGTGACACCTTTGTAAC 5'& || .||.. ||||| .|| || &5' GTAGTGTGGTGTGGGGGCAGTG 3' Amfr mmu-miR-3471 beg:892 end:908 pic:3' TTACGGAATGTCAACCTAGAGT 5'& ||| |||.||||| &5' ----CCTG-----TGGGTCTCA 3' Amfr mmu-miR-34a beg:821 end:839 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& . | .||||||||. &5' ----TTGGA--GGACACTGCT- 3' Amfr mmu-miR-361 beg:311 end:329 pic:3' CATGGGGACCTCTAAGACTATT 5'& |. ||| ||.||||| &5' --ATTTCTG----TTTTGATA- 3' Amfr mmu-miR-370 beg:503 end:523 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& ||| ||.| |||||||| &5' ACC----TCTAGACCAGCAGG- 3' Amfr mmu-miR-374star beg:990 end:1012 pic:3' GAGCCTGTTACTAT-TATGTTGG 5'& |||. ||| ||.|||.| &5' ---GGATT-TGAAACATGCAATC 3' Amfr mmu-miR-375 beg:244 end:267 pic:3' AGTGCGCTCGG--CTTGCTTGTTT 5'& | |||. |.||||.|||| &5' ----GGGAGTAGGGGACGAGCAAA 3' Amfr mmu-miR-377 beg:110 end:131 pic:3' TGTTTTCAACGGAA---ACACACTA 5'& || |.||| ||||||. &5' ------GTGGTCTTTAGTGTGTGG- 3' Amfr mmu-miR-409-3p beg:596 end:616 pic:3' TCCCCAAG-TGGCTCGTTGTAAG 5'& ||| .|| .||||||| &5' -----TTCTGCCCT-TAACATTC 3' Amfr mmu-miR-423-5p beg:172 end:189 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& .||||| |||||.| &5' ---------TTCTCTTCCCCTTA 3' Amfr mmu-miR-431star beg:865 end:887 pic:3' TCTTCGGGACGTTCTGCTGGAC 5'& |.|||||| ..|| |||| &5' -GGAGCCCT-TGAGTTC-CCTG 3' Amfr mmu-miR-432 beg:1529 end:1547 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& || ||| || .||||.| &5' -TGA-CAC----CT-TTCCAGG- 3' Amfr mmu-miR-449a beg:78 end:99 pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||| || .|| |.||.|||. &5' ACCTGC-GAC--TGCATTGCT- 3' Amfr mmu-miR-450a-3p beg:624 end:642 pic:3' TACTTACGTTTCG---TAGGGGTTA 5'& .||| .||||||. &5' ---------GAGCCCAGTCCCCAG- 3' Amfr mmu-miR-450b-5p beg:569 end:586 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& ||||| .|||||.|| &5' ---TCAGG-----GCTGCAGAA 3' Amfr mmu-miR-450b-5p beg:516 end:536 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& |||| ||||. ||.|.|| &5' ----CAGG-ACATGGTGTAGAA 3' Amfr mmu-miR-465a-3p beg:724 end:744 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||| || ||.||.|| &5' ---ACTTT--AATTCCTTGGTC 3' Amfr mmu-miR-465b-3p beg:724 end:744 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||| || ||.||.|| &5' ---ACTTT--AATTCCTTGGTC 3' Amfr mmu-miR-465c-3p beg:724 end:744 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||| || ||.||.|| &5' ---ACTTT--AATTCCTTGGTC 3' Amfr mmu-miR-469 beg:33 end:53 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& .||| |.||||||| &5' ---TACCTACC-----GGAAGAGGC- 3' Amfr mmu-miR-485 beg:5 end:25 pic:3' CTTAAGTAGTGCC---GGTCGGAGA 5'& |||| .||||||| &5' -------TCACCTTCCTCAGCCTC- 3' Amfr mmu-miR-494 beg:1042 end:1069 pic:3' CTCCAAAGGGCACA---TACAAAGT 5'& ||||||... |||||||| &5' -AGGTTTTTTTTTTTTAATGTTTCA 3' Amfr mmu-miR-494 beg:1271 end:1293 pic:3' CTCCAAAGGGCACAT-ACAAAGT 5'& .|||||. ||| |||||.| &5' -GGGTTTT---TGTTTTGTTTTA 3' Amfr mmu-miR-497 beg:324 end:348 pic:3' ATGTTTGGTGTCACACGACGAC 5'& ||.||||||||| ||.|| &5' TATAAACCACAGCAGA-TGTTG 3' Amfr mmu-miR-503 beg:1236 end:1261 pic:3' GACGTCATGACAAG-GGCGACGAT 5'& || ||| |.||||.|| &5' --GCCTTACCTTGAACTGCTGTTA 3' Amfr mmu-miR-503 beg:1378 end:1400 pic:3' GACGTCATGACAAGG-GCGACGAT 5'& |||||. || || ||||||| &5' --GCAGTGGAGTCCCACGCTGCT- 3' Amfr mmu-miR-503star beg:1449 end:1467 pic:3' GGTCCGTCACCTT-TGTTATGAG 5'& || |||| |.|||.|| &5' ----GC-GTGGTTTATAATGCT- 3' Amfr mmu-miR-509-5p beg:538 end:560 pic:3' TACT-AACGGTGTAAGACCTCAT 5'& ||. ||| .|| |||||||| &5' -TGGTTTGGTAC---CTGGAGTA 3' Amfr mmu-miR-511 beg:774 end:796 pic:3' ACTCACGTCTCGTTTTCCGTA 5'& ||| | .| ||||||||| &5' TGATC-CTTGGAAAAAGGCAT 3' Amfr mmu-miR-532-3p beg:1360 end:1379 pic:3' ACGTTCGGAAC-CCACACCCTCC 5'& |. || ||||||||.| &5' -----GTAGTGTGGTGTGGGGG- 3' Amfr mmu-miR-532-5p beg:776 end:797 pic:3' TGCCAGGATGTGAGTTCCGTAC 5'& | |||| |||||||| &5' --GATCCTTGGAAAAAGGCATG 3' Amfr mmu-miR-539 beg:154 end:181 pic:3' TGTGT--GGTTC-CTATTAAAGAGG 5'& |.|| |. | || |||||||. &5' ATACTTTCTTTGTGAC-ATTTCTCT 3' Amfr mmu-miR-546 beg:422 end:440 pic:3' CTGAGGCAC-GGTGGTA 5'& |. || || |||||| &5' GGAGCC-TGACCACCA- 3' Amfr mmu-miR-665 beg:12 end:28 pic:3' TCCCTGGAGTCGGAGGACCA 5'& ||||||||||||| &5' -----CCTCAGCCTCCTG-- 3' Amfr mmu-miR-666-3p beg:280 end:303 pic:3' TCGTCCGCTAGTG--C-GACGTCGG 5'& .|||| ||.| | ||||||| &5' ---GGGCGCTCGCCTGCCTGCAGC- 3' Amfr mmu-miR-666-5p beg:280 end:300 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& ||| |||.| ||||.|| &5' GGCGCTCGCC----TGCCTGC- 3' Amfr mmu-miR-666-5p beg:47 end:73 pic:3' CC-GAGAGTGTCGACACGGGCGA 5'& || || || |||.| ||||.||| &5' GGCCTGTCCCAGTTCTGCCTGCT 3' Amfr mmu-miR-669i beg:1393 end:1409 pic:3' CATACGTACACACATATACGT 5'& || |||.|.||| &5' ----GCTGCTCTGTGTGTGC- 3' Amfr mmu-miR-672 beg:2 end:25 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& || | ||| | .||.|||| &5' TC-CTCACCTT-CCTCAGCCTC- 3' Amfr mmu-miR-680 beg:330 end:347 pic:3' GGGGGTACAGTCGTCTACGGG 5'& ||| |||||||||.. &5' ---CCA---CAGCAGATGTT- 3' Amfr mmu-miR-681 beg:291 end:313 pic:3' TCGACGGACG--GTCGCTCCGAC 5'& |||||||| |||| || .|| &5' --CTGCCTGCAGCAGCTAGTTTG 3' Amfr mmu-miR-682 beg:564 end:584 pic:3' GTCTGAAGTGACA-CTGACGTC 5'& .|| .|| |.|||||| &5' -GGAA---GCTCAGGGCTGCAG 3' Amfr mmu-miR-683 beg:322 end:342 pic:3' CTCCTGTGTCGAATGTCGTCC 5'& ||.|.| ||||||| &5' ---GATATAAACCACAGCAG- 3' Amfr mmu-miR-683 beg:408 end:427 pic:3' CTCCTGTGTCGAATGTCGTCC 5'& || .|. .||||||| &5' ---GAA--GGTGCGCAGCAGG 3' Amfr mmu-miR-683 beg:283 end:305 pic:3' CTCCTGTGT-CGAATGTCGTCC 5'& | |.| || |.|||||| &5' --GCTCGCCTGCCTGCAGCAG- 3' Amfr mmu-miR-684 beg:1551 end:1573 pic:3' AACTGAAC-TTCCCTTTTGA 5'& ||| |||||.||.|| &5' -TGAAAATAAAGGGGAAGCT 3' Amfr mmu-miR-687 beg:1002 end:1020 pic:3' AGTAACGACGTAAG-GTCCTATC 5'& |||| || .|||||| &5' -------TGCAATCATAGGATA- 3' Amfr mmu-miR-706 beg:1034 end:1055 pic:3' AAAAAACTCTGTC-CCAAAGAGA 5'& ||| ||. |||||.|.| &5' ----TTG-GATTAAGGTTTTTTT 3' Amfr mmu-miR-708 beg:1386 end:1411 pic:3' GGGT-CGATCTAACATTCGAGGAA 5'& |||| |||. |||. |. || &5' CCCACGCTGCTCTGTGTGTGCC-- 3' Amfr mmu-miR-709 beg:2 end:26 pic:3' AGGA--GGACGGAGACGGAGG 5'& |||| ||| |||| |||||| &5' TCCTCACCTTCCTCAGCCTCC 3' Amfr mmu-miR-709 beg:701 end:720 pic:3' AGGAGGACGGAGACGGAGG 5'& ||||.| |||.| |||.. &5' -CCTCTT-CCTTT-CCTTT 3' Amfr mmu-miR-713 beg:106 end:127 pic:3' CG-ACACACGGAAGTCACGT 5'& || |||| |.|||.||||. &5' GCATGTG-GTCTTTAGTGT- 3' Amfr mmu-miR-741 beg:165 end:180 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& .|| |||.|||| &5' ----------GTGACATTTCTC- 3' Amfr mmu-miR-743a beg:1515 end:1533 pic:3' AGATGAGTCGAACCACAGAAAG 5'& ||| |||| ||||||| &5' ---ACTGAGCT---TGTCTTT- 3' Amfr mmu-miR-743b-3p beg:1512 end:1533 pic:3' AGATAAGTCGT-ACT---ACAGAAAG 5'& |||| ||| ||||||| &5' -------AGCACTGAGCTTGTCTTT- 3' Amfr mmu-miR-759 beg:1282 end:1299 pic:3' CAGTTTTAACAAACGTGAGACG 5'& |||||| .|||.||. &5' -------TTGTTT-TACTTTGT 3' Amfr mmu-miR-760 beg:860 end:882 pic:3' AGGGGTGTCTGGGT-CTCGGC 5'& ||||.. || ||| |||.. &5' TCCCTGGAG-CCCTTGAGTT- 3' Amfr mmu-miR-764-5p beg:1472 end:1494 pic:3' TCCTCCTGTACACTCGTGG 5'& .|||||.|.|| || || &5' GGGAGGGCGTGGTCGCTCC 3' Amfr mmu-miR-764-5p beg:514 end:533 pic:3' TCCTCCTGTACACTCGTGG 5'& || |||||||| | |.| &5' AGCAGGACATG-GTGTA-- 3' Amfr mmu-miR-767 beg:1355 end:1375 pic:3' ACGAGTCTGTTGGTACCACGT 5'& ||| | ..|||||. &5' --CTCTTGT-AGTGTGGTGT- 3' Amfr mmu-miR-767 beg:510 end:533 pic:3' ACGAGTCTGTTG-GTACCACGT 5'& | ||| ||. |||||||.| &5' -GACCAG-CAGGACATGGTGTA 3' Amfr mmu-miR-871 beg:298 end:316 pic:3' GTACTGACCGT-GATTAGACTTAT 5'& ||| |||.|.||||| &5' --------GCAGCTAGTTTGAAT- 3' Amfr mmu-miR-876-5p beg:1082 end:1107 pic:3' ATCACTAAGTGTCTCTTTAGGT 5'& |||| ||. .|| ||||||| &5' TAGTCCTTTTGGGAAAAATCCA 3' Amfr mmu-miR-877star beg:813 end:834 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& |||.| | .||||||| &5' ----AGGGGTGTTTGGAGGACA 3' Amfr mmu-miR-881 beg:1007 end:1027 pic:3' AGATAAGTCTTTTCTGTGTCAA 5'& ||| |..| |||.|||| &5' -----TCATAGGATACATAGTT 3' Amfr mmu-miR-98 beg:929 end:949 pic:3' TTGTTATGTTGAATG-ATGGAGT 5'& |.||. || |.||||| &5' ------ATAATCCACATGCCTCA 3' Amfr mmu-miR-99bstar beg:1509 end:1528 pic:3' GCCTGGGTGTCTGTGCTCGAAC 5'& ||| ||| .||||||| &5' -GGAAGCAC-----TGAGCTTG 3' Amfr mmu-miR-9star beg:1012 end:1031 pic:3' TGAAAGCCAATAGATCGAAATA 5'& || || |||.||||| &5' ------GGATACATAGTTTTAT 3' Amfr mmu-miR-544 beg:567 end:587 pic:3' CTCGAACGATTTTT-ACGTCTTA 5'& ||| |... |||||||| &5' ------GCTCAGGGCTGCAGAAT 3' Amfr mmu-miR-195 beg:86 end:103 pic:3' CGGTTATAAAGAC---ACGACGAT 5'& ||| |||||||. &5' ----------CTGCATTGCTGCTG 3' Amfr mmu-miR-505 beg:219 end:237 pic:3' TCTTTTGGTCGT--TCACAACTGC 5'& || .|||||||| &5' ------CCTCTTCTGGTGTTGAC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Amfr RAID00001795 mmu-miR-421-3p miRNA MIMAT0004869 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00037395 mmu-miR-539-5p miRNA MIMAT0003169 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00042188 mmu-miR-206-5p miRNA MIMAT0017004 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00071945 mmu-miR-132-3p miRNA MIMAT0000144 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00163090 mmu-miR-325-3p miRNA MIMAT0004640 Amfr mRNA 23802 Prediction 0.2202 Amfr RAID00208481 mmu-miR-761 miRNA MIMAT0003893 Amfr mRNA 23802 Prediction 0.2202 Amfr RAID00316009 mmu-miR-590-3p miRNA MIMAT0004896 Amfr mRNA 23802 Prediction 0.2202 Amfr RAID00346804 mmu-miR-29a-3p miRNA MIMAT0000535 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00365179 mmu-miR-6919-3p miRNA MIMAT0027739 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00377587 mmu-miR-25-3p miRNA MIMAT0000652 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00427350 mmu-miR-682 miRNA MIMAT0003459 Amfr mRNA 23802 Prediction 0.2202 Amfr RAID00497101 mmu-miR-21a-3p miRNA MIMAT0004628 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00514903 mmu-miR-3057-3p miRNA MIMAT0014823 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00527966 mmu-miR-6410 miRNA MIMAT0025163 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00537089 mmu-miR-19a-3p miRNA MIMAT0000651 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00557717 mmu-miR-6353 miRNA MIMAT0025096 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00576745 mmu-miR-7074-5p miRNA MIMAT0028054 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00602041 mmu-miR-683 miRNA MIMAT0003461 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00630849 mmu-miR-1907 miRNA MIMAT0007876 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00680684 mmu-miR-3087-5p miRNA MIMAT0014895 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00736451 mmu-miR-141-3p miRNA MIMAT0000153 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00796090 mmu-miR-330-3p miRNA MIMAT0000569 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00805427 mmu-miR-214-3p miRNA MIMAT0000661 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00815000 mmu-miR-200b-3p miRNA MIMAT0000233 Amfr mRNA 23802 Prediction 0.2381 Amfr RAID00823347 mmu-miR-494-3p miRNA MIMAT0003182 Amfr mRNA 23802 Prediction 0.2202 Amfr RAID00857503 mmu-miR-19b-3p miRNA MIMAT0000513 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00898549 mmu-miR-6918-5p miRNA MIMAT0027736 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00933769 mmu-miR-6925-3p miRNA MIMAT0027751 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00934874 mmu-miR-223-3p miRNA MIMAT0000665 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID00946312 mmu-miR-195a-5p miRNA MIMAT0000225 Amfr mRNA 23802 CLIP-seq//Prediction 0.6478 Amfr RAID00998288 mmu-miR-6943-3p miRNA MIMAT0027787 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01053211 mmu-miR-7033-5p miRNA MIMAT0027970 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01066086 mmu-miR-133a-3p miRNA MIMAT0000145 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01075343 mmu-miR-7b-5p miRNA MIMAT0000678 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01092897 mmu-miR-7024-3p miRNA MIMAT0027953 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01099962 mmu-mir-325 miRNA MI0000597 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01125261 mmu-miR-193a-5p miRNA MIMAT0004544 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01133786 mmu-miR-16-5p miRNA MIMAT0000527 Amfr mRNA 23802 CLIP-seq//Prediction 0.6478 Amfr RAID01198397 mmu-miR-429-3p miRNA MIMAT0001537 Amfr mRNA 23802 Prediction 0.2381 Amfr RAID01229743 mmu-miR-133b-3p miRNA MIMAT0000769 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01416234 mmu-miR-15b-5p miRNA MIMAT0000124 Amfr mRNA 23802 CLIP-seq//Prediction 0.6478 Amfr RAID01446539 mmu-miR-505-3p miRNA MIMAT0003513 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01542102 mmu-miR-7119-3p miRNA MIMAT0028136 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01631419 mmu-miR-876-5p miRNA MIMAT0004854 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01722092 mmu-miR-433-3p miRNA MIMAT0001420 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01854146 mmu-miR-499-5p miRNA MIMAT0003482 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID01900885 mmu-miR-873a-5p miRNA MIMAT0004936 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02035942 mmu-miR-411-3p miRNA MIMAT0001093 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02056293 mmu-miR-7118-5p miRNA MIMAT0028133 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02062912 mmu-miR-8095 miRNA MIMAT0031396 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02082280 mmu-miR-5107-5p miRNA MIMAT0020615 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02121701 mmu-miR-488-3p miRNA MIMAT0003450 Amfr mRNA 23802 Prediction 0.2202 Amfr RAID02186191 mmu-miR-7002-3p miRNA MIMAT0027907 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02249401 mmu-miR-369-3p miRNA MIMAT0003186 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02328957 mmu-miR-449a-5p miRNA MIMAT0001542 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02336737 mmu-miR-6369 miRNA MIMAT0025113 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02359161 mmu-miR-22-3p miRNA MIMAT0000531 Amfr mRNA 23802 Prediction 0.2202 Amfr RAID02466338 mmu-miR-6914-3p miRNA MIMAT0027729 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02549782 mmu-miR-322-5p miRNA MIMAT0000548 Amfr mRNA 23802 CLIP-seq//Prediction 0.6478 Amfr RAID02567322 mmu-miR-1906 miRNA MIMAT0007872 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02735321 mmu-miR-15a-5p miRNA MIMAT0000526 Amfr mRNA 23802 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7353 Amfr RAID02788473 mmu-miR-5124b miRNA MIMAT0025136 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02838660 mmu-miR-202-3p miRNA MIMAT0000235 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02854062 mmu-miR-182-5p miRNA MIMAT0000211 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID02920092 mmu-miR-192-3p miRNA MIMAT0017012 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03009847 mmu-miR-208b-3p miRNA MIMAT0004939 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03036631 mmu-miR-150-5p miRNA MIMAT0000160 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03037622 mmu-miR-6361 miRNA MIMAT0025104 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03066996 mmu-miR-6413 miRNA MIMAT0025166 Amfr mRNA 23802 Prediction 0.2202 Amfr RAID03105444 mmu-miR-24-3p miRNA MIMAT0000219 Amfr mRNA 23802 Prediction 0.2202 Amfr RAID03127102 mmu-miR-7647-3p miRNA MIMAT0029797 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03155067 mmu-miR-7069-5p miRNA MIMAT0028044 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03157820 mmu-miR-129-5p miRNA MIMAT0000209 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03170106 mmu-miR-497a-5p miRNA MIMAT0003453 Amfr mRNA 23802 CLIP-seq//Prediction 0.6478 Amfr RAID03206907 mmu-miR-195b miRNA MIMAT0025076 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03282781 mmu-miR-6342 miRNA MIMAT0025085 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03296307 mmu-miR-3098-3p miRNA MIMAT0014918 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03308288 mmu-miR-6419 miRNA MIMAT0025175 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03329403 mmu-miR-212-3p miRNA MIMAT0000659 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03373477 mmu-miR-7647-5p miRNA MIMAT0029796 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03384490 mmu-miR-142b miRNA MIMAT0031402 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03581383 mmu-miR-449c-5p miRNA MIMAT0003460 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03591482 mmu-miR-6974-5p miRNA MIMAT0027850 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03740478 mmu-miR-92b-3p miRNA MIMAT0004899 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03776214 mmu-miR-200c-3p miRNA MIMAT0000657 Amfr mRNA 23802 Prediction 0.2381 Amfr RAID03853536 mmu-miR-7076-3p miRNA MIMAT0028059 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03858708 mmu-miR-370-3p miRNA MIMAT0001095 Amfr mRNA 23802 Prediction 0.2381 Amfr RAID03888830 mmu-miR-543-3p miRNA MIMAT0003168 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03896525 mmu-miR-3102-5p.2-5p miRNA MIMAT0014934 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03908537 mmu-miR-29c-3p miRNA MIMAT0000536 Amfr mRNA 23802 Prediction 0.2202 Amfr RAID03909725 mmu-miR-496a-3p miRNA MIMAT0003738 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03922316 mmu-miR-29b-3p miRNA MIMAT0000127 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID03936556 mmu-miR-362-5p miRNA MIMAT0000706 Amfr mRNA 23802 NGS (Next Generation Sequencing) 0.5483 Amfr RAID03949022 mmu-miR-203-3p miRNA MIMAT0000236 Amfr mRNA 23802 Prediction 0.2202 Amfr RAID03955590 mmu-miR-653-5p miRNA MIMAT0004943 Amfr mRNA 23802 Prediction 0.2202 Amfr RAID04007960 mmu-miR-7044-3p miRNA MIMAT0027993 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID04018866 mmu-miR-7a-5p miRNA MIMAT0000677 Amfr mRNA 23802 Prediction 0.1828 Amfr RAID04056522 mmu-miR-142a-3p miRNA MIMAT0000155 Amfr mRNA 23802 Prediction 0.1828