DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004521 mmu-miR-15b* 64209 Herpud1 aucucgucguuuauuACUAAGc |||||| ucugcugguucgauuUGAUUCc 2 8 376 397 [mm9:8:96919031-96919052:+] 0.7896 120 6 -8.33 -0.1497 MIMAT0004525 mmu-miR-99b* 64209 Herpud1 gccugggugucugugCUCGAAc |||||| ugucguuauucugaaGAGCUUu 2 8 190 211 [mm9:8:96918845-96918866:+] 0.7002 120 6 -11.98 -0.1636 MIMAT0000143 mmu-miR-9* 64209 Herpud1 ugAAAGCCAAU-AGA----UCGAAAUa | || |||| ||| ||||||| caUGUC-GUUAUUCUGAAGAGCUUUAa 2 21 188 213 [mm9:8:96918843-96918868:+] 0.7002 148 7 -10.97 -1.1818 MIMAT0000154 mmu-miR-142-5p 64209 Herpud1 ucaUCACGAAAGAUGAAAUAc |||| | ||||||||| cuaAGUG--UACUACUUUAUa 2 19 419 437 [mm9:8:96919074-96919092:+] 0.7896 159 7 -13.99 -1.3283 MIMAT0004535 mmu-miR-150* 64209 Herpud1 gauAGGGGGUCCGGACAUGGUc | | |:| | |||||:| aauUACACUAAG--UGUACUAc 2 20 412 431 [mm9:8:96919067-96919086:+] 0.7896 128 0 -9.15 -0.1295 MIMAT0004542 mmu-miR-191* 64209 Herpud1 cccuUGCUUUAGGU-UC-ACGUCg |:|:|| :|| || ||||| cuacAUGGAAGUCAUAGAUGCAGa 2 19 346 369 [mm9:8:96919001-96919024:+] 0.7001 125 0 -16.61 -0.9151 MIMAT0000230 mmu-miR-199a-3p 64209 Herpud1 auUGGUUACACGUCUGAUGAca ||:|| |||: |||||| acACUAA-GUGU--ACUACUuu 3 21 416 434 [mm9:8:96919071-96919089:+] 0.7896 135 0 -12.94 -0.2981 MIMAT0004572 mmu-miR-290-3p 64209 Herpud1 cccGAAUUUUGAU-CCGCCG-UGAAa :||||| | | ||:||| |||| uccUUUAAACCGAGGGUGGCGACUUg 2 22 519 544 [mm9:8:96919174-96919199:+] 0.6978 136 0 -19.22 -0.2371 MIMAT0000370 mmu-miR-292-3p 64209 Herpud1 uguGAGUUUUGG--ACCGCCG-UGAAa ||: ||||| ||:||| |||| uucCUUUAAACCGAGGGUGGCGACUUg 2 22 518 544 [mm9:8:96919173-96919199:+] 0.6978 132 0 -23.05 -0.2371 MIMAT0004620 mmu-let-7a* 64209 Herpud1 ccUUUCUGUCAUCUAACAUAUc :|||| : | | |||||| cuGAAGA-GCUUUAAUGUAUAc 2 21 200 220 [mm9:8:96918855-96918875:+] 0.7002 122 6 -5.33 -0.1221 MIMAT0004620 mmu-let-7a* 64209 Herpud1 ccuuucugucaucuaACAUAUc |||||| ucuaggagagacuuaUGUAUAa 2 8 474 495 [mm9:8:96919129-96919150:+] 0.7391 120 6 -15.00 -0.3249 MIMAT0004621 mmu-let-7b* 64209 Herpud1 cccuuccgucauccaACAUAUc |||||| ucugaagagcuuuaaUGUAUAc 2 8 199 220 [mm9:8:96918854-96918875:+] 0.7002 120 6 -8.46 -0.1233 MIMAT0004621 mmu-let-7b* 64209 Herpud1 cccuuccgucauccaACAUAUc |||||| ucuaggagagacuuaUGUAUAa 2 8 474 495 [mm9:8:96919129-96919150:+] 0.7391 120 6 -7.82 -0.3276 MIMAT0005439 mmu-let-7c-2* 64209 Herpud1 ccUUUCUGUCAUCUAACAUAUc :|||| : | | |||||| cuGAAGA-GCUUUAAUGUAUAc 2 21 200 220 [mm9:8:96918855-96918875:+] 0.7002 122 6 -5.33 -0.1221 MIMAT0005439 mmu-let-7c-2* 64209 Herpud1 ccuuucugucaucuaACAUAUc |||||| ucuaggagagacuuaUGUAUAa 2 8 474 495 [mm9:8:96919129-96919150:+] 0.7391 120 6 -15.00 -0.3249 MIMAT0004623 mmu-let-7f* 64209 Herpud1 cccuuccguuaucuaACAUAUc |||||| ucugaagagcuuuaaUGUAUAc 2 8 199 220 [mm9:8:96918854-96918875:+] 0.7002 120 6 -9.19 -0.1233 MIMAT0004623 mmu-let-7f* 64209 Herpud1 cccuuccguuaucuaACAUAUc |||||| ucuaggagagacuuaUGUAUAa 2 8 474 495 [mm9:8:96919129-96919150:+] 0.7391 120 6 -8.60 -0.3303 MIMAT0004625 mmu-miR-16* 64209 Herpud1 agucgucgugucaguUAUGACc |||||| gaagagcuuuaauguAUACUGu 2 8 202 223 [mm9:8:96918857-96918878:+] 0.7002 120 6 -9.21 -0.1198 MIMAT0004627 mmu-miR-20a* 64209 Herpud1 gaaAUUCACGAGCA---UUACGUCa ||| ||||: | ||||||| guaUAAUUGCUUUUUAAAAUGCAGu 2 20 490 514 [mm9:8:96919145-96919169:+] 0.7391 158 7 -14.00 -1.2438 MIMAT0004631 mmu-miR-29a* 64209 Herpud1 gacuugugguuuucuUUAGUCa |||||| uguacuacuuuauauAAUCAGu 2 8 424 445 [mm9:8:96919079-96919100:+] 0.7896 120 6 -10.46 -0.3088 MIMAT0000549 mmu-miR-322* 64209 Herpud1 cacaacgucgcgaaGUACAAa |||||| agugaauugcuagaCAUGUUa 2 8 443 463 [mm9:8:96919098-96919118:+] 0.7850 120 6 -11.34 -0.2159 MIMAT0000551 mmu-miR-323-3p 64209 Herpud1 ucuccagcuggcacAUUACAc |||||| auucugaagagcuuUAAUGUa 2 8 197 217 [mm9:8:96918852-96918872:+] 0.7002 120 6 -5.80 -0.1686 MIMAT0000556 mmu-miR-324-3p 64209 Herpud1 ucgucguggacccCGUCACc |||||| ugcuuuuuaaaauGCAGUGc 2 8 497 516 [mm9:8:96919152-96919171:+] 0.6978 120 6 -8.47 -0.1732 MIMAT0004640 mmu-miR-325 64209 Herpud1 aacuauccuccACGAGUUAUUu ||:||||||| gccgaguuuucUGUUCAAUAAa 2 12 562 583 [mm9:8:96919217-96919238:+] 0.6918 151 7 -12.33 -1.2461 MIMAT0000569 mmu-miR-330* 64209 Herpud1 agaGACGUCCGGGACACGAA-ACg | | | | | ||||||| || ccaCAGGAUGACAUGUGCUUCUGu 2 21 106 129 [mm9:8:96918761-96918784:+] 0.5837 124 0 -18.45 -0.5011 MIMAT0000569 mmu-miR-330* 64209 Herpud1 agAGACGUCCGGGACA-CGAAACg ||||: | |: || |||||| gcUCUGUCG--CUGGUGGCUUUGa 2 22 11 32 [mm9:8:96918666-96918687:+] 0.6377 122 6 -22.23 -0.5025 MIMAT0000569 mmu-miR-330* 64209 Herpud1 agagacguccgggacACGAAAcg |||||| agacuuauguauaauUGCUUUuu 3 9 482 504 [mm9:8:96919137-96919159:+] 0.7391 120 0 -6.83 -0.3351 MIMAT0004665 mmu-miR-218-1* 64209 Herpud1 ccacgaacugccuugGUACAAa |||||| cagugaauugcuagaCAUGUUa 2 8 442 463 [mm9:8:96919097-96919118:+] 0.7850 120 6 -9.28 -0.2159 MIMAT0004667 mmu-miR-199b 64209 Herpud1 auUGGUUACACGUCUGAUGAca ||:|| |||: |||||| acACUAA-GUGU--ACUACUuu 3 21 416 434 [mm9:8:96919071-96919089:+] 0.7896 135 0 -12.94 -0.2981 MIMAT0004691 mmu-miR-382* 64209 Herpud1 uuUUUCACAACAGGCACUUACu ||||| ||| |: |||||| auAAAGUUUUG-CUAUGAAUGa 2 21 579 599 [mm9:8:96919234-96919254:+] 0.6918 142 6 -15.77 -0.1127 MIMAT0004691 mmu-miR-382* 64209 Herpud1 uuuuucACAACAGGCACUUAcu | | || |||||| acuuuaUAUAAUCAGUGAAUug 3 17 430 451 [mm9:8:96919085-96919106:+] 0.7896 128 0 -7.45 -0.1573 MIMAT0001422 mmu-miR-434-3p 64209 Herpud1 uccuCAGCUCACUA-CCAAGUUu | ||||| | |||||| cuuuGCCGAGUUUUCUGUUCAAu 2 19 558 580 [mm9:8:96919213-96919235:+] 0.6918 125 6 -12.17 -0.1153 MIMAT0001422 mmu-miR-434-3p 64209 Herpud1 ucCUCAGCUCA--CUACCAAGUUu || || || || |||||| uuGAUUCCUGUUGGAAUGUUCAAa 2 21 390 413 [mm9:8:96919045-96919068:+] 0.7896 123 6 -10.32 -0.4012 MIMAT0002107 mmu-miR-466a-3p 64209 Herpud1 agaAUACACACGCACAUACAUAu || | | | | ||||||| uucUAGGAGAGACU-UAUGUAUa 2 21 473 494 [mm9:8:96919128-96919149:+] 0.7391 146 7 -6.86 -1.2563 MIMAT0002108 mmu-miR-467a-1* 64209 Herpud1 cacAUCCACAC-ACAUACAUAUa |||| | | |||||||| uucUAGGAGAGACUUAUGUAUAa 2 20 473 495 [mm9:8:96919128-96919150:+] 0.7391 154 7 -9.56 -1.2941 MIMAT0002108 mmu-miR-467a-1* 64209 Herpud1 cacaUCCACACACAUACAUAUa | | | | ||||||| ucugAAGAGCUUUAAUGUAUAc 2 19 199 220 [mm9:8:96918854-96918875:+] 0.7002 142 7 -4.99 -1.0984 MIMAT0002112 mmu-miR-471 64209 Herpud1 cacuuuucgUGAUAUGAUGCAu | |:|||||| | auuacacuaAGUGUACUACUUu 2 14 413 434 [mm9:8:96919068-96919089:+] 0.7896 121 0 -9.89 -0.1398 MIMAT0004822 mmu-miR-770-5p 64209 Herpud1 gcaccgGGUCUGUGCAC-CACGa :|| | ||||| |||| uggaagUCAUAGACGUGUGUGCa 2 17 315 337 [mm9:8:96918970-96918992:+] 0.6105 124 0 -20.65 -0.3150 MIMAT0004822 mmu-miR-770-5p 64209 Herpud1 gcaccGGGUCUGUGCAC-CACGa ||||| |:||| |||| accucCCCAG--AUGUGUGUGCa 2 18 281 301 [mm9:8:96918936-96918956:+] 0.6554 122 0 -23.38 -0.5200 MIMAT0004188 mmu-miR-802 64209 Herpud1 uucCUACUUAGAA--ACA-AUGACu || ||: :|| ||| ||||| ucuGAAGAGCUUUAAUGUAUACUGu 2 20 199 223 [mm9:8:96918854-96918878:+] 0.7002 122 0 -10.69 -1.0937 MIMAT0003736 mmu-miR-670 64209 Herpud1 aaGUGGUGUAUGUGAGUCCCUa :||: :|||:| |||| || acUACUUUAUAUAAUCAGUGAa 2 21 427 448 [mm9:8:96919082-96919103:+] 0.7896 136 0 -12.46 -0.1218 MIMAT0003894 mmu-miR-764-5p 64209 Herpud1 uccuccuguacACUCGUGg ||||||| cauguucugccUGAGCACc 2 9 265 283 [mm9:8:96918920-96918938:+] 0.7002 140 7 -15.08 -0.1630 MIMAT0003740 mmu-miR-674 64209 Herpud1 auGUGGUGAGG-GUA-GAGUCACg :||:|||:: :|| |||||| ugUACUACUUUAUAUAAUCAGUGa 2 21 424 447 [mm9:8:96919079-96919102:+] 0.7896 130 6 -20.11 -0.5808 MIMAT0003451 mmu-miR-677 64209 Herpud1 agucuucGAU-UAGUAGUGACUu :|| || |||| ||| uacuacuUUAUAUAAUCAGUGAa 2 16 426 448 [mm9:8:96919081-96919103:+] 0.7896 122 0 -9.40 -0.2074 MIMAT0004825 mmu-miR-423-5p 64209 Herpud1 uuucagagcgagagaCGGGGAGu ||||||| uacaaacugaacaggGCCCCUCa 2 9 167 189 [mm9:8:96918822-96918844:+] 0.7002 140 7 -19.47 -0.8752 MIMAT0003478 mmu-miR-467b* 64209 Herpud1 cacAACCACAC-ACAUACAUAUa | || | | |||||||| uucUAGGAGAGACUUAUGUAUAa 2 20 473 495 [mm9:8:96919128-96919150:+] 0.7391 146 7 -7.59 -1.2941 MIMAT0003478 mmu-miR-467b* 64209 Herpud1 cacaaccacacacaUACAUAUa ||||||| ucugaagagcuuuaAUGUAUAc 2 9 199 220 [mm9:8:96918854-96918875:+] 0.7002 140 7 -4.99 -1.0984 MIMAT0004827 mmu-miR-297b-3p 64209 Herpud1 auACCCAUACACACAUACAUAu | || : | | ||||||| ucUAGGAGAGACU-UAUGUAUa 2 21 474 494 [mm9:8:96919129-96919149:+] 0.7391 142 7 -7.87 -1.2585 MIMAT0004827 mmu-miR-297b-3p 64209 Herpud1 auacccauacacacaUACAUAu |||||| uucugaagagcuuuaAUGUAUa 2 8 198 219 [mm9:8:96918853-96918874:+] 0.7002 120 6 -6.28 -0.1521 MIMAT0003494 mmu-miR-704 64209 Herpud1 gauccucgucUCGUGUACAGa || ||||||: gugaauugcuAG-ACAUGUUa 2 12 444 463 [mm9:8:96919099-96919118:+] 0.7850 125 0 -8.29 -0.1554 MIMAT0003497 mmu-miR-707 64209 Herpud1 gcauccguucgccgUACUGAc |||||| aaguuuugcuaugaAUGACUg 2 8 582 602 [mm9:8:96919237-96919257:+] 0.6918 120 6 -12.36 -0.2285 MIMAT0003500 mmu-miR-710 64209 Herpud1 gagUUGAGAGGG---GUUCUGAAcc :|||:|:|: :|||||| cagGACUUUUCUAGGAGAGACUUau 3 20 465 489 [mm9:8:96919120-96919144:+] 0.7804 130 0 -15.93 -0.1004 MIMAT0003504 mmu-miR-713 64209 Herpud1 cgACACACGGAAGUCACgu | | | : |||||| acUUUAUAUAAUCAGUGaa 3 18 430 448 [mm9:8:96919085-96919103:+] 0.7896 121 0 -8.48 -0.5464 MIMAT0003504 mmu-miR-713 64209 Herpud1 cgacacacggaaGUCACGu |||||| cuuuuuaaaaugCAGUGCu 2 8 499 517 [mm9:8:96919154-96919172:+] 0.6978 120 6 -9.70 -0.1538 MIMAT0003507 mmu-miR-500 64209 Herpud1 acuugggaaCGGGU-CCA-CGUAa ||||| ||| |||| aagcagaagGCCCAGGGUCGCAUg 2 14 245 268 [mm9:8:96918900-96918923:+] 0.7002 120 0 -20.66 -0.4222 MIMAT0003509 mmu-miR-501-3p 64209 Herpud1 guuuaggaaCGGG-CCCA-CGUAa |||| |||| |||| aagcagaagGCCCAGGGUCGCAUg 2 14 245 268 [mm9:8:96918900-96918923:+] 0.7002 120 0 -21.66 -0.4222 MIMAT0003782 mmu-miR-676 64209 Herpud1 ucGAGUUGUUGGA--GUCCUGcc || :||| :| |||||| ugCUAGACAUGUUAGCAGGACuu 3 20 450 472 [mm9:8:96919105-96919127:+] 0.7850 130 0 -14.84 -0.1088 MIMAT0004237 mmu-miR-742 64209 Herpud1 aaAUGGGUC-GU-ACCACCGAAAg |:|:| | |: |||||||||| ugUGCUCUGUCGCUGGUGGCUUUg 2 21 8 31 [mm9:8:96918663-96918686:+] 0.6377 162 7 -22.75 -0.3235 MIMAT0004839 mmu-miR-743b-5p 64209 Herpud1 acUACCUGUGGUCAGACUUgu || | |:::| |||||| ucAU-GUCGUUAUUCUGAAga 3 20 187 206 [mm9:8:96918842-96918861:+] 0.7002 133 0 -12.98 -0.1352 MIMAT0004841 mmu-miR-871 64209 Herpud1 guacugACCGUGAUUAGACUUau || |::|| |||||| cccucaUGUCGUUAUUCUGAAga 3 18 184 206 [mm9:8:96918839-96918861:+] 0.7002 141 0 -13.40 -0.1339 MIMAT0004849 mmu-miR-883a-3p 64209 Herpud1 uaugacucucgacaACGUCAau |||||| auugcuuuuuaaaaUGCAGUgc 3 9 495 516 [mm9:8:96919150-96919171:+] 0.6978 120 0 -6.98 -0.1428 MIMAT0004851 mmu-miR-883b-3p 64209 Herpud1 uaugacucucuacaACGUCAau |||||| auugcuuuuuaaaaUGCAGUgc 3 9 495 516 [mm9:8:96919150-96919171:+] 0.6978 120 0 -6.98 -0.1414 MIMAT0004864 mmu-miR-297a* 64209 Herpud1 auACCCAUACACACAUACAUAu | || : | | ||||||| ucUAGGAGAGACU-UAUGUAUa 2 21 474 494 [mm9:8:96919129-96919149:+] 0.7391 142 7 -7.87 -1.2585 MIMAT0004864 mmu-miR-297a* 64209 Herpud1 auacccauacacacaUACAUAu |||||| uucugaagagcuuuaAUGUAUa 2 8 198 219 [mm9:8:96918853-96918874:+] 0.7002 120 6 -6.28 -0.1521 MIMAT0004866 mmu-miR-297c* 64209 Herpud1 auACCCAUACACACAUACAUAu | || : | | ||||||| ucUAGGAGAGACU-UAUGUAUa 2 21 474 494 [mm9:8:96919129-96919149:+] 0.7391 142 7 -7.87 -1.2585 MIMAT0004866 mmu-miR-297c* 64209 Herpud1 auacccauacacacaUACAUAu |||||| uucugaagagcuuuaAUGUAUa 2 8 198 219 [mm9:8:96918853-96918874:+] 0.7002 120 6 -6.28 -0.1521 MIMAT0004876 mmu-miR-466b-3p 64209 Herpud1 agaAUACACACGCACAUACAUAu || | | | | ||||||| uucUAGGAGAGACU-UAUGUAUa 2 21 473 494 [mm9:8:96919128-96919149:+] 0.7391 146 7 -6.86 -1.2563 MIMAT0005453 mmu-miR-466b-3-3p 64209 Herpud1 agaAUACACACGCACAUACAUAa || | | | | ||||||| uucUAGGAGAGACU-UAUGUAUa 2 21 473 494 [mm9:8:96919128-96919149:+] 0.7391 146 7 -6.08 -1.2563 MIMAT0004878 mmu-miR-466c-3p 64209 Herpud1 agaAUACACACGCACAUACAUAu || | | | | ||||||| uucUAGGAGAGACU-UAUGUAUa 2 21 473 494 [mm9:8:96919128-96919149:+] 0.7391 146 7 -6.86 -1.2563 MIMAT0004880 mmu-miR-466e-3p 64209 Herpud1 agaAUACACACGCACAUACAUAu || | | | | ||||||| uucUAGGAGAGACU-UAUGUAUa 2 21 473 494 [mm9:8:96919128-96919149:+] 0.7391 146 7 -6.86 -1.2563 MIMAT0004883 mmu-miR-466g 64209 Herpud1 acACACACGUACACA-GACAUa ||||||||||||| ||||| ugUGUGUGCAUGUGUGCUGUAc 2 20 292 313 [mm9:8:96918947-96918968:+] 0.6105 159 0 -33.05 -0.4355 MIMAT0004887 mmu-miR-467d* 64209 Herpud1 cacAUCCACAC-ACAUACAUAUa |||| | | |||||||| uucUAGGAGAGACUUAUGUAUAa 2 20 473 495 [mm9:8:96919128-96919150:+] 0.7391 154 7 -9.56 -1.2941 MIMAT0004887 mmu-miR-467d* 64209 Herpud1 cacaUCCACACACAUACAUAUa | | | | ||||||| ucugAAGAGCUUUAAUGUAUAc 2 19 199 220 [mm9:8:96918854-96918875:+] 0.7002 142 7 -4.99 -1.0984 MIMAT0004898 mmu-miR-654-3p 64209 Herpud1 uucCACUACCAGUCGUCUGUAu |||| |:: :|||||| ucaGUGA--AUUGCUAGACAUg 2 20 441 460 [mm9:8:96919096-96919115:+] 0.7850 132 6 -13.44 -0.1174 MIMAT0004931 mmu-miR-466d-3p 64209 Herpud1 gaUACACACGCACAUACAUAu | | | | | ||||||| cuAGGAGAGACU-UAUGUAUa 2 20 475 494 [mm9:8:96919130-96919149:+] 0.7391 141 7 -7.04 -1.2563 MIMAT0004933 mmu-miR-878-3p 64209 Herpud1 agAUGGGUC-ACACCACA-GUACg | ||||| ||| |||| |||| ccUCCCCAGAUGU-GUGUGCAUGu 2 21 282 304 [mm9:8:96918937-96918959:+] 0.6554 133 0 -26.13 -0.3946 MIMAT0005294 mmu-miR-467e* 64209 Herpud1 uauAUCCACAC-ACAUACAUAUa |||| | | |||||||| uucUAGGAGAGACUUAUGUAUAa 2 20 473 495 [mm9:8:96919128-96919150:+] 0.7391 154 7 -9.44 -1.2941 MIMAT0005294 mmu-miR-467e* 64209 Herpud1 uauaUCCACACACAUACAUAUa | | | | ||||||| ucugAAGAGCUUUAAUGUAUAc 2 19 199 220 [mm9:8:96918854-96918875:+] 0.7002 142 7 -4.99 -1.0984 MIMAT0005834 mmu-miR-466i 64209 Herpud1 auCACACAUACACACAC-ACAUa ||||||: |||||| |||| auGUGUGUGCAUGUGUGCUGUAc 2 21 291 313 [mm9:8:96918946-96918968:+] 0.6554 144 0 -22.24 -0.5290 MIMAT0005835 mmu-miR-1-2-as 64209 Herpud1 accUUACAUUUCUUCAUACAu |||||| | |||||| uuuAAUGUAUA-CUGUAUGUa 2 19 209 228 [mm9:8:96918864-96918883:+] 0.7002 128 6 -12.66 -0.1044 MIMAT0005839 mmu-miR-669f 64209 Herpud1 uaUGCACACACACAUACAUAUac | | | | | |||||||| cuAGGAGAGACU-UAUGUAUAau 3 22 475 496 [mm9:8:96919130-96919151:+] 0.7391 131 0 -5.40 -0.1271 MIMAT0005846 mmu-miR-467f 64209 Herpud1 acAUCCACAC-ACACACAUAUa |||| | | | |||||| ucUAGGAGAGACUUAUGUAUAa 2 20 474 495 [mm9:8:96919129-96919150:+] 0.7391 122 6 -6.48 -0.3276 MIMAT0005846 mmu-miR-467f 64209 Herpud1 acauccacacacacACAUAUa |||||| cugaagagcuuuaaUGUAUAc 2 8 200 220 [mm9:8:96918855-96918875:+] 0.7002 120 6 -3.41 -0.1233 MIMAT0005853 mmu-miR-669e 64209 Herpud1 uaCUUGUACGUGUGUG-UUCUGu | | | ||||| || ||||| aaGCAAAAGCACAAACUAAGACa 2 21 133 155 [mm9:8:96918788-96918810:+] 0.6419 132 0 -17.43 -0.6420 MIMAT0005854 mmu-miR-467g 64209 Herpud1 uauAUACACAC-ACAUACAUAu || | | | ||||||| uucUAGGAGAGACUUAUGUAUa 2 19 473 494 [mm9:8:96919128-96919149:+] 0.7391 141 7 -6.86 -1.2646 MIMAT0007863 mmu-miR-1902 64209 Herpud1 uuCAGUACGGAUGACGUGGAGa ||: |||||: ||||||| auGUUCUGCCUG-AGCACCUCc 2 21 266 286 [mm9:8:96918921-96918941:+] 0.7002 162 7 -24.33 -0.4467 MIMAT0007873 mmu-miR-1896 64209 Herpud1 gaGGAGUGGGUGGUAGUCUCUc |:|:| :|: ||||| || uaCUUUA--UAUAAUCAGUGAa 2 21 429 448 [mm9:8:96919084-96919103:+] 0.7896 121 0 -11.76 -0.1267 MIMAT0007874 mmu-miR-1904 64209 Herpud1 ggagggaggucuccUCGUCUUg ||||||| ucauaggcacuguaAGCAGAAg 2 9 232 253 [mm9:8:96918887-96918908:+] 0.7002 140 7 -13.59 -0.3619 MIMAT0007877 mmu-miR-1894-5p 64209 Herpud1 ucucCGUCC----ACCAUCCCCUCUc ||||| | |||| |||| guuaGCAGGACUUUUCUAGGAGAGAc 2 19 460 485 [mm9:8:96919115-96919140:+] 0.7804 121 0 -18.52 -0.1058 MIMAT0009390 mmu-miR-1927 64209 Herpud1 agUCAGGGAUUGUA-GGUCUCCAg :|| | :|| | ||||||| agGGUGGC-GACUUGGCAGAGGUa 2 22 531 553 [mm9:8:96919186-96919208:+] 0.6948 142 7 -15.07 -0.5153 MIMAT0009417 mmu-miR-1950 64209 Herpud1 acUGGUAUAGGAAUCUACGUCu |: : | :| ||||||||| acAUGGAAGUCAUAGAUGCAGa 2 21 348 369 [mm9:8:96919003-96919024:+] 0.7001 156 7 -21.57 -1.0742 MIMAT0009417 mmu-miR-1950 64209 Herpud1 acUGGUAUAGGAAUCUACGUCu |::: |::| | |||||| uaAUUGCUUUUUAAAAUGCAGu 2 21 493 514 [mm9:8:96919148-96919169:+] 0.6978 124 6 -9.58 -0.1167 MIMAT0009419 mmu-miR-669m 64209 Herpud1 uauacaaacacaccUACAUAUa ||||||| ucugaagagcuuuaAUGUAUAc 2 9 199 220 [mm9:8:96918854-96918875:+] 0.7002 140 7 -4.69 -1.1007 MIMAT0009419 mmu-miR-669m 64209 Herpud1 uauacaaacacaccUACAUAUa ||||||| ucuaggagagacuuAUGUAUAa 2 9 474 495 [mm9:8:96919129-96919150:+] 0.7391 140 7 -4.99 -1.2964 MIMAT0009431 mmu-miR-1958 64209 Herpud1 ugaaUGACGAAGGUGAAAGGAu | ||| ::||||||| uuaaAAUGC-AGUGCUUUCCUu 2 19 503 523 [mm9:8:96919158-96919178:+] 0.6978 144 7 -12.02 -0.8218 MIMAT0011211 mmu-miR-2135 64209 Herpud1 caAAGCCGGGGUUC-UGGAGa ||| | ||::|| ||||| ugUUCUG-CCUGAGCACCUCc 2 19 267 286 [mm9:8:96918922-96918941:+] 0.7002 124 0 -17.62 -0.4402 MIMAT0011217 mmu-miR-2141 64209 Herpud1 uugaaaaGACU-GUGGAGGa |||| ||||||| guucugcCUGAGCACCUCCc 2 13 268 287 [mm9:8:96918923-96918942:+] 0.7002 151 7 -20.26 -0.2909 MIMAT0000133 mmu-miR-101a 64209 Herpud1 aagucaauagugucAUGACAu |||||| agagcuuuaauguaUACUGUa 2 8 204 224 [mm9:8:96918859-96918879:+] 0.7002 120 6 -7.83 -0.2315 MIMAT0000144 mmu-miR-132 64209 Herpud1 gcUGGUACCGACAUCUGACAau :|:||| | |||||| uuGCUAUGAAU---GACUGU-- 3 21 587 603 [mm9:8:96919242-96919258:+] 0.6918 124 0 -11.46 -0.2085 MIMAT0000144 mmu-miR-132 64209 Herpud1 gcUGGU-AC-CGAC-AUCUG-ACAAu |:|| || :|| ||||| |||| uaAUCAGUGAAUUGCUAGACAUGUUa 2 21 438 463 [mm9:8:96919093-96919118:+] 0.7850 121 0 -15.65 -1.1981 MIMAT0000155 mmu-miR-142-3p 64209 Herpud1 agguaUUUCAUCCUU--UGUGAUgu || || || |||||| guuggAAUGUUCAAAUUACACUAag 3 19 399 423 [mm9:8:96919054-96919078:+] 0.7896 125 0 -9.16 -0.2140 MIMAT0000156 mmu-miR-144 64209 Herpud1 ucauguAGUAGAUAUGACAu | || |||||||| gagcuuUAAUGUAUACUGUa 2 15 205 224 [mm9:8:96918860-96918879:+] 0.7002 154 7 -12.71 -1.2646 MIMAT0000210 mmu-miR-181a 64209 Herpud1 ugagUGGCUGUCGCAACU-UACAa ||| |||| | ||| |||| gaaaACCCACAG-GAUGACAUGUg 2 20 100 122 [mm9:8:96918755-96918777:+] 0.5837 129 0 -13.65 -0.2379 MIMAT0000221 mmu-miR-191 64209 Herpud1 guCGACGAA--AACCCUAAGG-CAAc |||| || | |||||| ||| cuGCUGGUUCGAUUUGAUUCCUGUUg 2 22 377 402 [mm9:8:96919032-96919057:+] 0.7896 124 0 -18.76 -1.1980 MIMAT0000518 mmu-miR-196a 64209 Herpud1 ggguUGUUGUAC-UUUGAUGGAu ||| :| | : |||||:| aauuACACUAAGUGUACUACUUu 2 19 412 434 [mm9:8:96919067-96919089:+] 0.7896 133 0 -11.53 -0.1398 MIMAT0000541 mmu-miR-96 64209 Herpud1 ucguUUUUACACGA--UCACGGUUu :| ||||||| ||||||| ggauGACAUGUGCUUCUGUGCCAAg 2 20 111 135 [mm9:8:96918766-96918790:+] 0.5837 162 7 -22.68 -0.4134 MIMAT0004651 mmu-miR-340-5p 64209 Herpud1 uuAGUCAGAGUAACGAAAUAUu | ||| | | | ||||||| acUAAGUGU-ACUACUUUAUAu 2 21 418 438 [mm9:8:96919073-96919093:+] 0.7896 154 7 -6.97 -1.2964 MIMAT0000616 mmu-miR-101b 64209 Herpud1 aagUCGAUAGUGU-CAUGACAu |||| | |:: |||||| aagAGCUUUAAUGUAUACUGUa 2 19 203 224 [mm9:8:96918858-96918879:+] 0.7002 125 6 -12.25 -0.2294 MIMAT0000656 mmu-miR-139-5p 64209 Herpud1 gaccucugUGCACGUGACAUcu |:|| :|||||| gagcuuuaAUGUAUACUGUAug 3 15 205 226 [mm9:8:96918860-96918881:+] 0.7002 134 0 -14.60 -0.1846 MIMAT0000659 mmu-miR-212 64209 Herpud1 acCGGCACUGACCUCUGACAau ||: ||| | |||||| uuGCUAUGAAU---GACUGU-- 3 21 587 603 [mm9:8:96919242-96919258:+] 0.6918 128 0 -12.13 -0.2124 MIMAT0000659 mmu-miR-212 64209 Herpud1 accGGCACUGACC--UCUG-ACAAu | |||| | | |||| |||| aauCAGUGAAUUGCUAGACAUGUUa 2 20 439 463 [mm9:8:96919094-96919118:+] 0.7850 122 0 -16.92 -1.2029 MIMAT0000663 mmu-miR-218 64209 Herpud1 ugUACCAAUCUAGUUCGUGUu :|| || ||||||| cuGUGCCAAGCAAAAGCACAa 2 20 126 146 [mm9:8:96918781-96918801:+] 0.6419 143 7 -12.23 -1.0761 MIMAT0000666 mmu-miR-320 64209 Herpud1 agcgggagaguugggUCGAAAa |||||| gucguuauucugaagAGCUUUa 2 8 191 212 [mm9:8:96918846-96918867:+] 0.7002 120 6 -13.87 -0.3135 MIMAT0000667 mmu-miR-33 64209 Herpud1 acgUUACG-UUGAUGUUACGUg | ||| :|| |||||| auaAUUGCUUUUUAAAAUGCAg 2 19 492 513 [mm9:8:96919147-96919168:+] 0.7391 121 6 -10.20 -0.1197 MIMAT0000673 mmu-miR-181b 64209 Herpud1 ugggUGGCUGUCGUUACU-UACAa ||| |||| :|||| |||| gaaaACCCACAG-GAUGACAUGUg 2 20 100 122 [mm9:8:96918755-96918777:+] 0.5837 133 0 -16.69 -0.2379 MIMAT0000674 mmu-miR-181c 64209 Herpud1 ugagUGGCUGUCCAACU-UACAa ||| ||||| ||| |||| gaaaACCCACAGGAUGACAUGUg 2 19 100 122 [mm9:8:96918755-96918777:+] 0.5837 138 0 -17.36 -0.2379 MIMAT0000679 mmu-miR-217 64209 Herpud1 agGUCAGUCAAGGA--CUACGUCAu :| |:: ||::| ||||||| uaUAAUUGCUUUUUAAAAUGCAGUg 2 22 491 515 [mm9:8:96919146-96919170:+] 0.7391 148 7 -11.82 -1.1909 MIMAT0000747 mmu-miR-382 64209 Herpud1 gcUUAG-GUGGU--GCUUGUUGAAg |||: |||:| :| || |||| caAAUUACACUAAGUGUACUACUUu 2 21 410 434 [mm9:8:96919065-96919089:+] 0.7896 126 0 -10.50 -0.1211 MIMAT0001076 mmu-miR-384-3p 64209 Herpud1 uaACACUUGUU----AAAGAUCCUUa ||| |:||: |||||||||: caUGUUAGCAGGACUUUUCUAGGAGa 2 21 457 482 [mm9:8:96919112-96919137:+] 0.7804 147 0 -18.67 -0.3165 MIMAT0001081 mmu-miR-196b 64209 Herpud1 ggguUGUUG-UCCUUUGAUGGAu ||| : || : |||||:| aauuACACUAAGUGUACUACUUu 2 19 412 434 [mm9:8:96919067-96919089:+] 0.7896 133 0 -10.09 -0.1398 MIMAT0001091 mmu-miR-410 64209 Herpud1 uguccgguagacacAAUAUAa |||||| cuaaguguacuacuUUAUAUa 2 8 419 439 [mm9:8:96919074-96919094:+] 0.7896 120 6 -4.67 -0.3122 MIMAT0001092 mmu-miR-376b 64209 Herpud1 uucaccUACAAGGAGAUACUa | |||:: |||||| ucaauaAAGUUUUGCUAUGAa 2 16 576 596 [mm9:8:96919231-96919251:+] 0.6918 127 6 -9.80 -0.3053 MIMAT0004747 mmu-miR-411 64209 Herpud1 gcAUGCGAUAUGCCA-GAUGAu ||| ||| | || ||||| auUACACUA-AGUGUACUACUu 2 20 413 433 [mm9:8:96919068-96919088:+] 0.7896 121 0 -10.93 -1.2265 MIMAT0001095 mmu-miR-370 64209 Herpud1 ugguccaagGUGGGGUCGUCCg ||: ::|||||| auugcuagaCAUGUUAGCAGGa 2 14 448 469 [mm9:8:96919103-96919124:+] 0.7850 133 6 -22.02 -0.3091 MIMAT0001632 mmu-miR-451 64209 Herpud1 uugAGUCAUUAC--CAUUGCCAAa ||| :||| | ||||||| aagUCAUAGAUGCAGAAACGGUUc 2 20 354 377 [mm9:8:96919009-96919032:+] 0.7896 154 7 -12.03 -0.9917 MIMAT0003112 mmu-miR-489 64209 Herpud1 cgaCGGUAUAUACACCACA-GUAa |:|||| | || |||| ||| gaaGUCAUAGACGU-GUGUGCAUg 2 21 317 339 [mm9:8:96918972-96918994:+] 0.6105 130 0 -15.56 -0.2796 MIMAT0003112 mmu-miR-489 64209 Herpud1 cgacGGUAUAUACACCACA-GUAa || | |||| |||| ||| accuCCCCAGAUGU-GUGUGCAUg 2 20 281 303 [mm9:8:96918936-96918958:+] 0.6554 121 0 -15.38 -0.4063 MIMAT0003168 mmu-miR-543 64209 Herpud1 uucuucacguggcgCUUACAAa ||||||| uuugauuccuguugGAAUGUUc 2 9 389 410 [mm9:8:96919044-96919065:+] 0.7896 140 7 -10.28 -0.8667 MIMAT0003168 mmu-miR-543 64209 Herpud1 uucuUCACGUGGCG--CU-UACAAa |||| |::|| || ||||| aaucAGUGAAUUGCUAGACAUGUUa 2 19 439 463 [mm9:8:96919094-96919118:+] 0.7850 125 0 -11.81 -1.2013 MIMAT0004324 mmu-miR-181d 64209 Herpud1 ugggUGGCUGUUGUUACU-UACAa ||| |||: :|||| |||| gaaaACCCACAG-GAUGACAUGUg 2 20 100 122 [mm9:8:96918755-96918777:+] 0.5837 129 0 -18.40 -0.2400 MIMAT0004869 mmu-miR-421 64209 Herpud1 cgCGGGUU-AAUUACAGACAACUa |::|:| ||:|| ||||||: ugGUUCGAUUUGAUUCCUGUUGGa 2 22 381 404 [mm9:8:96919036-96919059:+] 0.7896 148 0 -18.02 -0.2263 MIMAT0004941 mmu-miR-544 64209 Herpud1 cucgaaCGAUUUUUACGUCUUa |: | |:|||||||| auggaaGUCAUAGAUGCAGAAa 2 17 350 371 [mm9:8:96919005-96919026:+] 0.7001 156 7 -12.12 -1.0082

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G045867 Herpud1 Mus musculus 64209

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Herpud1 mmu-miR-142-5p beg:419 end:437 pic:3' TCATCACGAAAGATGAAATAC 5'& ||||. ||||||||| &5' ---AGTGTA--CTACTTTAT- 3' Herpud1 mmu-miR-2141 beg:272 end:287 pic:3' TTGAAAAGACT-GTGGAGGA 5'& |||| ||||||| &5' -------CTGAGCACCTCC- 3' Herpud1 mmu-miR-1958 beg:506 end:523 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& ||| ..||||||| &5' ------TGCAG-TGCTTTCCT- 3' Herpud1 mmu-miR-1950 beg:353 end:370 pic:3' ACTGGTATAGGAATCTACGTCT 5'& .|| |||||||||| &5' -------GTCA-TAGATGCAGA 3' Herpud1 mmu-miR-423-5p beg:179 end:190 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& |||||||| &5' ---------------GCCCCTCA 3' Herpud1 mcmv-miR-m01-1 beg:55 end:73 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& ||.| ||.||||| &5' -----CGGCTCC-TTTTCCTC- 3' Herpud1 mcmv-miR-m21-1 beg:57 end:78 pic:3' GCCGAACTTGCACAGGGGATA 5'& ||||| ||||||. &5' CGGCTCCTTTTCCTCCCCTG- 3' Herpud1 mmu-let-7astar beg:475 end:495 pic:3' CCTTTCTGTCATCTAACATATC 5'& |||.|||| |||||| &5' GGAGAGACTTA----TGTATA- 3' Herpud1 mmu-let-7c-2star beg:475 end:495 pic:3' CCTTTCTGTCATCTAACATATC 5'& |||.|||| |||||| &5' GGAGAGACTTA----TGTATA- 3' Herpud1 mmu-miR-101astar beg:586 end:602 pic:3' CGTAGTCGTGACAC-TATTGACT 5'& .|| || ||.|||| &5' --------GCTATGAATGACTG- 3' Herpud1 mmu-miR-1224 beg:52 end:73 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& ||||. ||||.. ||||| &5' CTCCGGCTCCTTT-TCCTC-- 3' Herpud1 mmu-miR-1-2-as beg:209 end:229 pic:3' ACCTTACATTTCTTCATACAT 5'& |||||| ||||||| &5' ---AATGTATACT-GTATGTA 3' Herpud1 mmu-miR-135b beg:308 end:326 pic:3' AGTGTATCCTTACTTTTCGGTAT 5'& .||||.| |||.|||| &5' -TACATGG-------AAGTCATA 3' Herpud1 mmu-miR-135b beg:344 end:362 pic:3' AGTGTATCCTTACTTTTCGGTAT 5'& .||||.| |||.|||| &5' -TACATGG-------AAGTCATA 3' Herpud1 mmu-miR-144 beg:204 end:225 pic:3' TCATGTAG-TAGATATGACAT 5'& .| || ||||||||| &5' ---GCTTTAATGTATACTGTA 3' Herpud1 mmu-miR-144 beg:292 end:313 pic:3' TCATGTA-GTAGATATGACAT 5'& ||. | ||| |.|.||||| &5' -GTGTGTGCATGTGTGCTGTA 3' Herpud1 mmu-miR-145star beg:460 end:482 pic:3' GTTCTTGTCAT--AAAGGTCCTTA 5'& |.||| ||||.||||. &5' ----AGCAGGACTTTTCTAGGAG- 3' Herpud1 mmu-miR-183 beg:290 end:313 pic:3' TCACTTAAGATGGT--CACGGTAT 5'& ||| | |.| ||||..|| &5' -GTG---TGTGCATGTGTGCTGTA 3' Herpud1 mmu-miR-184 beg:560 end:579 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& || ||||.||.||.|| &5' --CCG----AGTTTTCTGTTCA 3' Herpud1 mmu-miR-187 beg:138 end:159 pic:3' GGCCGACGTTG-TG-TTCTGTGCT 5'& ||| || ||||||.|| &5' ------GCACAAACTAAGACATGA 3' Herpud1 mmu-miR-1894-3p beg:58 end:80 pic:3' GAGGGAAGTGGGAGAGGGAACG 5'& ||||.||. |||| |||| || &5' CTCCTTTT--CCTC-CCCTGGC 3' Herpud1 mmu-miR-1902 beg:265 end:286 pic:3' TTCAGTACGGATGACGTGGAGA 5'& ||. |||||. ||||||| &5' --GTTCTGCCTGA-GCACCTC- 3' Herpud1 mmu-miR-1929 beg:568 end:590 pic:3' GAGACGAGATATTTCAGGATCTT 5'& ||||.|| |||||||..|. &5' -TCTGTTCAATAAAGTTTTG--- 3' Herpud1 mmu-miR-1935 beg:256 end:277 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& ||.| .||| .||||||| &5' AGGG--TCGCATG-TTCTGCCT 3' Herpud1 mmu-miR-193star beg:239 end:259 pic:3' AGTAGAACGGGCGTT-TCTGGGT 5'& ||. |||. ||.|||| &5' ------TGTAAGCAGAAGGCCCA 3' Herpud1 mmu-miR-1948 beg:258 end:279 pic:3' GACATGCTCACGAGACGGATTT 5'& || || ||.|||||||.|. &5' --GT-CGCATGTTCTGCCTGAG 3' Herpud1 mmu-miR-1957 beg:114 end:134 pic:3' CAGTATACGAG---ATGGTGAC 5'& |||.||||. |.||| &5' --CATGTGCTTCTGTGCCA--- 3' Herpud1 mmu-miR-1957 beg:258 end:276 pic:3' CAGTATACGAGATGGTGAC 5'& |||. |||.|||.|| &5' GTCGCATGTTCTGCC---- 3' Herpud1 mmu-miR-1958 beg:51 end:72 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& .|| || ||| .|||||| &5' GCTCCG-GC-TCC-TTTTCCT- 3' Herpud1 mmu-miR-1960 beg:223 end:244 pic:3' TCGGGAGAAGATTGTCGTGACC 5'& |. .||| .|||||| &5' -GTAG-TTTCATA-GGCACTG- 3' Herpud1 mmu-miR-1961 beg:416 end:436 pic:3' AAGATTG--ATGATGGAGT 5'& |||| ||||||.|.| &5' --CTAAGTGTACTACTTTA 3' Herpud1 mmu-miR-20astar beg:494 end:515 pic:3' GAAATTCACGAGCA---TTACGTCA 5'& ||||. |||||||| &5' -------TGCTTTTTAAAATGCAGT 3' Herpud1 mmu-miR-218 beg:125 end:147 pic:3' TGTACCAATCTAGTTCGTGTT 5'& .|| || |||||||| &5' --GTGCCAAGCAAAAGCACAA 3' Herpud1 mmu-miR-28 beg:44 end:67 pic:3' GAGTTATCTGACACTCGAGGAA 5'& ||. |.|| .||||||| &5' -TCGTCTGGCTCC-GGCTCCTT 3' Herpud1 mmu-miR-293 beg:150 end:170 pic:3' TGTGATGTTTGAGACGCCGTGA 5'& |||. ||.| | |.||.|| &5' ACATG--AAGC-C-GTGGTAC- 3' Herpud1 mmu-miR-325 beg:570 end:584 pic:3' AACTATCCTCCACGAGTTATTT 5'& ||.|||||||| &5' -----------TGTTCAATAAA 3' Herpud1 mmu-miR-326 beg:247 end:262 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& ||| |||||||.| &5' -------GAA-GGCCCAGGG- 3' Herpud1 mmu-miR-330 beg:241 end:262 pic:3' CGGATTCTGTG-TCCGGGTCTCT 5'& |||| || ||||||||.| &5' ---TAAG-CAGAAGGCCCAGGG- 3' Herpud1 mmu-miR-376b beg:581 end:596 pic:3' TTCACCTACAAGGAGATACTA 5'& |||. |||||| &5' --------GTTTTGCTATGA- 3' Herpud1 mmu-miR-380-3p beg:420 end:440 pic:3' TTCTACACCTGGTATGATGTAT 5'& ||| ||.| .||.||| &5' -----GTGTACTACTTTATATA 3' Herpud1 mmu-miR-384-3p beg:464 end:482 pic:3' TAACACTTGTTAAAGATCCTTA 5'& |.|| |||||||||. &5' -----GGACT-TTTCTAGGAG- 3' Herpud1 mmu-miR-431 beg:447 end:471 pic:3' ACGTACTGC-CGGACGTTCTGT 5'& ||| ||| |. |||.||| &5' TGCTAGACATGTTAGCAGGAC- 3' Herpud1 mmu-miR-450a-3p beg:269 end:291 pic:3' TACTTACGT-TTCGT--AGGGGTTA 5'& ||| .|||| ||||||. &5' -----TGCCTGAGCACCTCCCCAG- 3' Herpud1 mmu-miR-455 beg:289 end:312 pic:3' CACATATACGGGCACCTGACG 5'& |||.|.||| .||| |||. &5' -TGTGTGTGCATGTGTGCTGT 3' Herpud1 mmu-miR-466a-5p beg:291 end:317 pic:3' ATACATGTACATGTGTG-TGTAT 5'& |.|||.|||||. | ||||. &5' TGTGTGCATGTGTGCTGTACATG 3' Herpud1 mmu-miR-466a-5p beg:327 end:353 pic:3' ATACATGTACATGTGTG-TGTAT 5'& |.|||.|||||. | | ||||. &5' TGTGTGCATGTGTGCTCTACATG 3' Herpud1 mmu-miR-466d-3p beg:289 end:313 pic:3' GATACACACGCACATAC-ATAT 5'& |.||||||| |||.|| |.|| &5' -TGTGTGTGCATGTGTGCTGTA 3' Herpud1 mmu-miR-466e-5p beg:291 end:316 pic:3' ATACATGTACATGTGTG-TGTAG 5'& |.|||.|||||. | |||| &5' TGTGTGCATGTGTGCTGTACAT- 3' Herpud1 mmu-miR-466e-5p beg:327 end:352 pic:3' ATACATGTACATGTGTG-TGTAG 5'& |.|||.|||||. | | |||| &5' TGTGTGCATGTGTGCTCTACAT- 3' Herpud1 mmu-miR-466f-3p beg:289 end:313 pic:3' CACACATAC--ACACAC-ACATAC 5'& |||||.|| |||||| |||| &5' -TGTGTGTGCATGTGTGCTGTA-- 3' Herpud1 mmu-miR-466g beg:289 end:313 pic:3' ACACACACGTACACA-GACATA 5'& ||||||||||||||| ||||| &5' TGTGTGTGCATGTGTGCTGTA- 3' Herpud1 mmu-miR-466i beg:286 end:313 pic:3' ATC-ACACATAC--ACACAC-ACATA 5'& || |||||.|| |||||| |||| &5' -AGATGTGTGTGCATGTGTGCTGTA- 3' Herpud1 mmu-miR-466l beg:287 end:313 pic:3' TTATACACACGTACATAA-ATAT 5'& .||.|||||||||||.| |.|| &5' GATGTGTGTGCATGTGTGCTGTA 3' Herpud1 mmu-miR-467a-1star beg:290 end:308 pic:3' CACATCCACACACATACATATA 5'& ||||||| ||||.|. &5' ------GTGTGTGCATGTGTG- 3' Herpud1 mmu-miR-467a-1star beg:326 end:344 pic:3' CACATCCACACACATACATATA 5'& ||||||| ||||.|. &5' ------GTGTGTGCATGTGTG- 3' Herpud1 mmu-miR-467bstar beg:290 end:308 pic:3' CACAACCACACACATACATATA 5'& ||||||| ||||.|. &5' ------GTGTGTGCATGTGTG- 3' Herpud1 mmu-miR-467bstar beg:326 end:344 pic:3' CACAACCACACACATACATATA 5'& ||||||| ||||.|. &5' ------GTGTGTGCATGTGTG- 3' Herpud1 mmu-miR-467dstar beg:290 end:308 pic:3' CACATCCACACACATACATATA 5'& ||||||| ||||.|. &5' ------GTGTGTGCATGTGTG- 3' Herpud1 mmu-miR-467dstar beg:326 end:344 pic:3' CACATCCACACACATACATATA 5'& ||||||| ||||.|. &5' ------GTGTGTGCATGTGTG- 3' Herpud1 mmu-miR-467estar beg:290 end:308 pic:3' TATATCCACACACATACATATA 5'& ||||||| ||||.|. &5' ------GTGTGTGCATGTGTG- 3' Herpud1 mmu-miR-467estar beg:320 end:344 pic:3' TATATC--CACACACATACATATA 5'& |||| ||||||| ||||.|. &5' --ATAGACGTGTGTGCATGTGTG- 3' Herpud1 mmu-miR-493 beg:454 end:475 pic:3' GGACCGTGTG-TCATCCTGGAAGT 5'& | || . || |||||.||. &5' ---GACATGTTAGCAGGACTTTT- 3' Herpud1 mmu-miR-504 beg:244 end:264 pic:3' CTATCTCACGTCT----GGTCCCAGA 5'& ||||| |||||||| &5' --------GCAGAAGGCCCAGGGTC- 3' Herpud1 mmu-miR-542-3p beg:10 end:21 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& ||||||.| &5' -------------TCTGTCGC- 3' Herpud1 mmu-miR-544 beg:353 end:371 pic:3' CTCGAACGATTTTTACGTCTTA 5'& |. |.|||||||| &5' ------GTCATAGATGCAGAA- 3' Herpud1 mmu-miR-568 beg:289 end:309 pic:3' CACACATATGTAAATATGTA 5'& |||||.|.||| |.|.| &5' -TGTGTGTGCATGTGTGC-- 3' Herpud1 mmu-miR-615-5p beg:170 end:188 pic:3' CTAGGCTCGTGGCCCCTGGGGG 5'& |.|| || ||.||||. &5' ---CTGAACA----GGGCCCCT 3' Herpud1 mmu-miR-669f beg:288 end:313 pic:3' TATGCACACAC--ACATAC-ATATAC 5'& |.||||||| |||.|| |.|| &5' --ATGTGTGTGCATGTGTGCTGTA-- 3' Herpud1 mmu-miR-669g beg:500 end:517 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& |.|| ||.||.||| &5' ------TTAAA--ATGCAGTGC- 3' Herpud1 mmu-miR-669h-3p beg:293 end:317 pic:3' ACACGTACACAC-ATATACGTAT 5'& |||||||||||| |.|| |||. &5' TGTGCATGTGTGCTGTA--CATG 3' Herpud1 mmu-miR-669h-3p beg:329 end:353 pic:3' ACACGTACACACATATACGTAT 5'& |||||||||||| |||. &5' TGTGCATGTGTGCTCTA-CATG 3' Herpud1 mmu-miR-669i beg:292 end:313 pic:3' CATACGTACACAC-ATATACGT 5'& ||.|||||||||| |.|| &5' GTGTGCATGTGTGCTGTA---- 3' Herpud1 mmu-miR-669k beg:323 end:345 pic:3' AAC-GTACGCAC--ATATACGTAT 5'& | |.||.||| |.|.||| &5' --GACGTGTGTGCATGTGTGC--- 3' Herpud1 mmu-miR-669k beg:295 end:317 pic:3' AACGTACGCAC-ATATACGTAT 5'& ||||||.||| |.|| |||. &5' -TGCATGTGTGCTGTA--CATG 3' Herpud1 mmu-miR-669m beg:288 end:308 pic:3' TATACAAACACACCTACATATA 5'& |||| ||||| ||||.|. &5' --ATGT--GTGTGCATGTGTG- 3' Herpud1 mmu-miR-669m beg:320 end:344 pic:3' TATACAAACACACCTACATATA 5'& ||| |||||| ||||.|. &5' ATAGACGTGTGTGCATGTGTG- 3' Herpud1 mmu-miR-671-5p beg:53 end:72 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& ||||.||.|||. ||||| &5' CTCCGGCTCCTT------TTCCT 3' Herpud1 mmu-miR-676 beg:95 end:116 pic:3' TCGAGTTGTTGGA-GTCCTGCC 5'& | | |||| |||||.| &5' ---TTGAAAACCCACAGGATG- 3' Herpud1 mmu-miR-692 beg:464 end:483 pic:3' CTCACTCCGC--GAGTTTCTCTA 5'& ||| .|| |.|||| &5' -----AGGACTTTTCTAGGAGA- 3' Herpud1 mmu-miR-696 beg:102 end:124 pic:3' GGGTGTCGTTC-GTGTGCG 5'& ||||||| | | || .|| &5' CCCACAGGATGACATGTGC 3' Herpud1 mmu-miR-696 beg:128 end:149 pic:3' GGGTGTCGT--TCGTGTGCG 5'& ||| |||| |||||| | &5' -CCA-AGCAAAAGCACAAAC 3' Herpud1 mmu-miR-704 beg:250 end:271 pic:3' GATCCTCGTCTC-GTGTACAGA 5'& ||| |||.| |.|||||. &5' --AGGCCCAGGGTCGCATGTT- 3' Herpud1 mmu-miR-708 beg:48 end:67 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& | ||| .||||||| &5' -CTGGCTCC------GGCTCCTT 3' Herpud1 mmu-miR-742 beg:7 end:31 pic:3' AAATGGGT---CGTACCACCGAAAG 5'& |.|.| || |||||||||| &5' --TGCTCTGTCGC-TGGTGGCTTT- 3' Herpud1 mmu-miR-743b-5p beg:160 end:180 pic:3' ACTACCTGTGGTCAGACTTGT 5'& .||| .|| ||||||| &5' --GTGG-TACAAA-CTGAACA 3' Herpud1 mmu-miR-760 beg:245 end:265 pic:3' AGGGGTG-TCTGGGTCTCGGC 5'& || ||.|||||.|.|| &5' ----CAGAAGGCCCAGGGTCG 3' Herpud1 mmu-miR-96 beg:115 end:135 pic:3' TCGTTTTTACACGAT--CACGGTTT 5'& ||||||| |||||||. &5' -------ATGTGCTTCTGTGCCAAG 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Herpud1 RAID00103500 mmu-miR-467e-3p miRNA MIMAT0005294 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID00174469 mmu-miR-466p-3p miRNA MIMAT0014892 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID00182531 mmu-miR-144-3p miRNA MIMAT0000156 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6559 Herpud1 RAID00220630 mmu-miR-7651-3p miRNA MIMAT0029805 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID00225000 mmu-miR-7075-5p miRNA MIMAT0028056 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID00226749 mmu-miR-410-3p miRNA MIMAT0001091 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6478 Herpud1 RAID00434190 mmu-miR-466c-3p miRNA MIMAT0004878 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID00460350 mmu-miR-467b-3p miRNA MIMAT0003478 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID00473024 mmu-miR-325-3p miRNA MIMAT0004640 Herpud1 mRNA 64209 Prediction 0.2202 Herpud1 RAID00473275 mmu-miR-181c-5p miRNA MIMAT0000674 Herpud1 mRNA 64209 Prediction 0.2202 Herpud1 RAID00481732 mmu-miR-6978-3p miRNA MIMAT0027859 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID00498156 mmu-miR-96-5p miRNA MIMAT0000541 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6478 Herpud1 RAID00526124 mmu-miR-466o-3p miRNA MIMAT0014886 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID00554080 mmu-miR-182-5p miRNA MIMAT0000211 Herpud1 mRNA 64209 CLIP-seq 0.5483 Herpud1 RAID00676585 mmu-miR-132-3p miRNA MIMAT0000144 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6308 Herpud1 RAID00691813 mmu-miR-489-3p miRNA MIMAT0003112 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6308 Herpud1 RAID00780423 mmu-miR-423-5p miRNA MIMAT0004825 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID00894046 mmu-miR-218-5p miRNA MIMAT0000663 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID01062932 mmu-miR-181a-5p miRNA MIMAT0000210 Herpud1 mRNA 64209 Prediction 0.2202 Herpud1 RAID01115388 mmu-miR-669l-3p miRNA MIMAT0017345 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID01139665 mmu-miR-9769-5p miRNA MIMAT0036461 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID01169859 mmu-miR-101b-3p miRNA MIMAT0000616 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6559 Herpud1 RAID01181687 mmu-miR-196a-5p miRNA MIMAT0000518 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6308 Herpud1 RAID01243219 mmu-miR-6975-3p miRNA MIMAT0027853 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID01331008 mmu-miR-6899-5p miRNA MIMAT0027698 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID01383488 mmu-miR-384-3p miRNA MIMAT0001076 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID01434577 mmu-miR-330-3p miRNA MIMAT0000569 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID01452975 mmu-miR-376b-3p miRNA MIMAT0001092 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6478 Herpud1 RAID01455829 mmu-miR-181b-5p miRNA MIMAT0000673 Herpud1 mRNA 64209 Prediction 0.2202 Herpud1 RAID01537702 mmu-miR-3060-3p miRNA MIMAT0014827 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID01738944 mmu-miR-181b-1-3p miRNA MIMAT0017067 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID01770229 mmu-miR-382-5p miRNA MIMAT0000747 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6308 Herpud1 RAID01850831 mmu-miR-421-3p miRNA MIMAT0004869 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6308 Herpud1 RAID01976238 mmu-miR-212-3p miRNA MIMAT0000659 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6308 Herpud1 RAID02005638 mmu-miR-466b-3p miRNA MIMAT0004876 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02020540 mmu-miR-6345 miRNA MIMAT0025088 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02021269 mmu-miR-181d-5p miRNA MIMAT0004324 Herpud1 mRNA 64209 Prediction 0.2202 Herpud1 RAID02043289 mmu-miR-1927 miRNA MIMAT0009390 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02108177 mmu-miR-101a-3p miRNA MIMAT0000133 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6478 Herpud1 RAID02124470 mmu-miR-467d-3p miRNA MIMAT0004887 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02244213 mmu-miR-142a-3p miRNA MIMAT0000155 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6478 Herpud1 RAID02304629 mmu-miR-543-3p miRNA MIMAT0003168 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6559 Herpud1 RAID02307605 mmu-miR-467c-3p miRNA MIMAT0017275 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02372197 mmu-miR-6357 miRNA MIMAT0025100 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02434516 mmu-miR-451a miRNA MIMAT0001632 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02466141 mmu-miR-191-5p miRNA MIMAT0000221 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6308 Herpud1 RAID02483743 mmu-miR-181b-2-3p miRNA MIMAT0017084 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02523136 mmu-miR-20a-3p miRNA MIMAT0004627 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02553923 mmu-miR-184-3p miRNA MIMAT0000213 Herpud1 mRNA 64209 CLIP-seq 0.5483 Herpud1 RAID02685753 mmu-miR-6396 miRNA MIMAT0025147 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02688131 mmu-miR-7076-5p miRNA MIMAT0028058 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02733402 mmu-miR-6921-5p miRNA MIMAT0027742 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02868766 mmu-miR-669m-3p miRNA MIMAT0009419 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID02922810 mmu-miR-33-5p miRNA MIMAT0000667 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6308 Herpud1 RAID02940185 mmu-miR-142a-5p miRNA MIMAT0000154 Herpud1 mRNA 64209 Prediction 0.2202 Herpud1 RAID03119922 mmu-miR-139-5p miRNA MIMAT0000656 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6308 Herpud1 RAID03124811 mmu-miR-370-3p miRNA MIMAT0001095 Herpud1 mRNA 64209 Prediction 0.2202 Herpud1 RAID03125416 mmu-miR-466m-3p miRNA MIMAT0014883 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID03221123 mmu-miR-340-5p miRNA MIMAT0004651 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6559 Herpud1 RAID03318952 mmu-miR-544-3p miRNA MIMAT0004941 Herpud1 mRNA 64209 Prediction 0.2202 Herpud1 RAID03332986 mmu-mir-325 miRNA MI0000597 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID03339813 mmu-miR-7030-5p miRNA MIMAT0027964 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID03472210 mmu-miR-669d-2-3p miRNA MIMAT0014884 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID03475185 mmu-miR-217-5p miRNA MIMAT0000679 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6478 Herpud1 RAID03530934 mmu-miR-1950 miRNA MIMAT0009417 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID03576218 mmu-miR-320-3p miRNA MIMAT0000666 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6478 Herpud1 RAID03739368 mmu-miR-344d-3p miRNA MIMAT0014808 Herpud1 mRNA 64209 CLIP-seq 0.5483 Herpud1 RAID03835709 mmu-miR-196b-5p miRNA MIMAT0001081 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6308 Herpud1 RAID03883401 mmu-miR-411-5p miRNA MIMAT0004747 Herpud1 mRNA 64209 CLIP-seq//Prediction 0.6308 Herpud1 RAID03962129 mmu-miR-9-3p miRNA MIMAT0000143 Herpud1 mRNA 64209 Prediction 0.1828 Herpud1 RAID03962735 mmu-let-7b-5p miRNA MIMAT0000522 Herpud1 mRNA 64209 CLIP-seq 0.5483 Herpud1 RAID03982849 mmu-miR-6983-3p miRNA MIMAT0027869 Herpud1 mRNA 64209 Prediction 0.1828