DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT014690 mmu-miR-149-5p Mus musculus Usp10 22224 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 22224 Usp10 cgacguuuguaggcuGACUUUc |||||| uguaacuuuauuaccCUGAAAa 2 8 580 601 [mm9:8:122481250-122481271:+] 0.6478 120 6 -8.87 -0.1234 MIMAT0000137 mmu-miR-126-5p 22224 Usp10 gcgcAUGGUUUUCAUUAUUAc | |: ||| |||||| ucuuUCCUUAAAAAAAUAAUu 2 18 329 349 [mm9:8:122480999-122481019:+] 0.6097 125 6 -3.33 -0.3152 MIMAT0000154 mmu-miR-142-5p 22224 Usp10 ucaUCACGAAAGAUGAAAUAc :||| || : ||||||| gugGGUGAUUGUAACUUUAUu 2 19 571 591 [mm9:8:122481241-122481261:+] 0.6478 158 7 -8.79 -1.0253 MIMAT0004536 mmu-miR-151-5p 22224 Usp10 ugaucugacacucGAGGAGcu |||||| aauucaucacacuCUCCUCcu 3 9 355 375 [mm9:8:122481025-122481045:+] 0.6272 120 0 -9.23 -0.1518 MIMAT0004537 mmu-miR-154* 22224 Usp10 uuaUCCAGUUGGCACAU-ACUAa | || || ||||| |||| cccACGUACACAGUGUAUUGAUu 2 20 715 737 [mm9:8:122481385-122481407:+] 0.6296 127 0 -11.55 -0.3164 MIMAT0004539 mmu-miR-183* 22224 Usp10 aauaccggGAAGCCAUUAAGUg :||: ||||||| aaaaauaaUUUUUUUAAUUCAu 2 15 340 361 [mm9:8:122481010-122481031:+] 0.6185 146 7 -6.94 -1.1885 MIMAT0000249 mmu-miR-30e* 22224 Usp10 cgACAUU--UGUAGGCUGACUUUc ||||| :||: |||||| auUGUAACUUUAUUACCCUGAAAa 2 21 578 601 [mm9:8:122481248-122481271:+] 0.6478 123 6 -11.65 -0.1234 MIMAT0000367 mmu-miR-291a-5p 22224 Usp10 ucucucccGGAGGU--GAAACUAc ||| :| :|||||| uccuuuacCCUGUAGUUUUUGAUa 2 15 372 395 [mm9:8:122481042-122481065:+] 0.6272 129 6 -9.92 -0.1163 MIMAT0004574 mmu-miR-294* 22224 Usp10 ucuaucccGGAGGU--AAAACUca ||| :| |||||| uccuuuacCCUGUAGUUUUUGAua 3 15 372 395 [mm9:8:122481042-122481065:+] 0.6272 125 0 -6.91 -0.1043 MIMAT0004631 mmu-miR-29a* 22224 Usp10 gacuUGUGG-UUUUC-----UUUAGUca || |: ||||| |||||| uauuACCCUGAAAAGAUUUCAAAUCAca 3 19 588 615 [mm9:8:122481258-122481285:+] 0.6478 124 0 -8.66 -0.1446 MIMAT0004635 mmu-miR-92a* 22224 Usp10 caUUACGGUGGUUAGGG-GUGGa |:|| |: |:|||| |||| guAGUGGAAUAAGUCCCGCACCa 2 21 273 295 [mm9:8:122480943-122480965:+] 0.6097 128 0 -22.92 -0.6042 MIMAT0004640 mmu-miR-325 22224 Usp10 aacuauccuccacgAGUUAUUu ||||||| aaaguugucacccaUCAAUAAa 2 9 749 770 [mm9:8:122481419-122481440:+] 0.6398 140 7 -6.29 -1.0566 MIMAT0000595 mmu-miR-345-5p 22224 Usp10 uucgugaccUGAUCCCCAGUCg || : ||||||| gacguagacACCGCGGGUCAGa 2 14 522 543 [mm9:8:122481192-122481213:+] 0.6478 145 7 -17.37 -0.2514 MIMAT0000605 mmu-miR-350 22224 Usp10 cuuucacauacccgAAACACUu ||||||| gcagcucuuguaaaUUUGUGAa 2 9 296 317 [mm9:8:122480966-122480987:+] 0.6097 140 7 -9.82 -1.2885 MIMAT0004659 mmu-miR-10a* 22224 Usp10 auaaggggAUCUAUGCUUAAAc |: | |:|||||| uaaauuugUGAAAAUGAAUUUu 2 15 306 327 [mm9:8:122480976-122480997:+] 0.6097 134 6 -5.87 -0.1528 MIMAT0004670 mmu-miR-7a* 22224 Usp10 auacCGUC--UGACA-CUAAACAac |||| :||| |||||| accaGCAGCUCUUGUAAAUUUGUga 3 19 292 316 [mm9:8:122480962-122480986:+] 0.6097 128 0 -12.49 -0.2561 MIMAT0004704 mmu-miR-335-3p 22224 Usp10 ccaguccuCGUU--AUUACUUUUu |:|| | :|||||| cagcucuuGUAAAUUUGUGAAAAu 2 15 297 320 [mm9:8:122480967-122480990:+] 0.6097 129 6 -6.68 -0.1522 MIMAT0004217 mmu-miR-465a-3p 22224 Usp10 agaugaaucuuuccGGGACUag |||||| uuguaacuuuauuaCCCUGAaa 3 9 579 600 [mm9:8:122481249-122481270:+] 0.6478 120 0 -11.77 -0.1744 MIMAT0003189 mmu-miR-291b-5p 22224 Usp10 ccucucccGGAGGU--GAAACUAg ||| :| :|||||| uccuuuacCCUGUAGUUUUUGAUa 2 15 372 395 [mm9:8:122481042-122481065:+] 0.6272 129 6 -10.92 -0.1163 MIMAT0003725 mmu-miR-675-5p 22224 Usp10 ugacacccgggaAAGGCGUGGu | ||||||| uaguggaauaagUCCCGCACCa 2 11 274 295 [mm9:8:122480944-122480965:+] 0.6097 142 7 -22.66 -0.6984 MIMAT0003728 mmu-miR-374* 22224 Usp10 gagCCUGUUACUAUUAUGUUgg ||| ||| | ||||||| aaaGGA-AAU-A-AAUACAAaa 3 20 442 460 [mm9:8:122481112-122481130:+] 0.5746 133 0 -7.64 -0.1750 MIMAT0004822 mmu-miR-770-5p 22224 Usp10 gcacCGGGU-C-UGUGCAC-CACGa ||||: | :| |||| |||| ccguGCCCGUGUGCCCGUGUGUGCc 2 19 1 25 [mm9:8:122480671-122480695:+] 0.5961 120 0 -26.20 -0.4156 MIMAT0014815 mmu-miR-3099* 22224 Usp10 guucccgaccuucCUUCGACc ||||||| cugacugacuucaGAAGCUGg 2 9 153 173 [mm9:8:122480823-122480843:+] 0.5873 140 7 -17.11 -0.3084 MIMAT0003897 mmu-miR-759 22224 Usp10 caguuUUAACAAACGUGAGAcg |||| | |||||| uuuuuAAUUCAUCACACUCUcc 3 18 350 371 [mm9:8:122481020-122481041:+] 0.6185 133 0 -10.43 -0.1010 MIMAT0003739 mmu-miR-673-5p 22224 Usp10 gagguuccuggucuCGACACuc |||||| caaaucacauucauGCUGUGua 3 9 607 628 [mm9:8:122481277-122481298:+] 0.6335 120 0 -12.93 -0.1037 MIMAT0004826 mmu-miR-146b* 22224 Usp10 ugguCUUGACUCAGGGAUCCcg | |:||| |:|||||| caguGUAUUGA-UUCCUAGGag 3 19 725 745 [mm9:8:122481395-122481415:+] 0.6296 140 0 -21.17 -0.1051 MIMAT0003476 mmu-miR-669b 22224 Usp10 ugUACGUGUACGUGUGUUUUga | | | || |:|||||| aaAAGGAAAUAAAUACAAAAaa 3 21 441 462 [mm9:8:122481111-122481132:+] 0.5746 136 0 -7.59 -0.1866 MIMAT0003742 mmu-miR-455 22224 Usp10 cacauauacgggcACCUGACg ||||||| ugacuucagaagcUGGACUGu 2 9 158 178 [mm9:8:122480828-122480848:+] 0.5873 140 7 -12.53 -0.1291 MIMAT0003742 mmu-miR-455 22224 Usp10 cacauauacgggcACCUGACg ||||||| gugggcacaaugaUGGACUGa 2 9 639 659 [mm9:8:122481309-122481329:+] 0.6193 140 7 -17.71 -0.9131 MIMAT0003495 mmu-miR-705 22224 Usp10 acGGGUGGGGUG---GA-GGGUGg |||| |:||| || ||||| uuCCCAACUCACUCACUACCCACc 2 19 44 67 [mm9:8:122480714-122480737:+] 0.4800 125 0 -29.46 -0.2250 MIMAT0003508 mmu-miR-501-5p 22224 Usp10 aaagugggucccugUUUCCUaa |||||| ucgcucuuacuucaAAAGGAaa 3 9 428 449 [mm9:8:122481098-122481119:+] 0.5616 120 0 -12.39 -0.1969 MIMAT0003512 mmu-miR-450b-3p 22224 Usp10 uaCGUACGUUUUACAAGGGUUa || | | | | |||||||| cuGCUUCCUACA-GUUCCCAAc 2 21 31 51 [mm9:8:122480701-122480721:+] 0.4800 154 7 -12.39 -0.1693 MIMAT0003781 mmu-miR-676* 22224 Usp10 cguucaGGAUU-CC-A-ACAUCUCa :|||: || | ||||||| caccucUCUAGUGGCUCUGUAGAGa 2 17 64 88 [mm9:8:122480734-122480758:+] 0.5084 145 7 -15.06 -0.1279 MIMAT0004210 mmu-miR-804 22224 Usp10 agguccacuccuuGUUGAGUGu |||||||| uuccuacaguuccCAACUCACu 2 10 35 56 [mm9:8:122480705-122480726:+] 0.4800 145 7 -13.44 -0.1232 MIMAT0004846 mmu-miR-881 22224 Usp10 agAUAAGUCUUUUCUGUGUCAa |:| | | : ||||||| cgUGUCCCCCACGUACACAGUg 2 21 708 729 [mm9:8:122481378-122481399:+] 0.6193 144 7 -12.35 -0.5371 MIMAT0004850 mmu-miR-883b-5p 22224 Usp10 acUGA-CGAUGGGU-AAGAG-UCAu ||| ||||||| |||| ||| ucACUCACUACCCACCUCUCUAGUg 2 21 52 76 [mm9:8:122480722-122480746:+] 0.4800 130 0 -22.05 -0.1220 MIMAT0004872 mmu-miR-465b-3p 22224 Usp10 agaugaaucuuuccGGGACUag |||||| uuguaacuuuauuaCCCUGAaa 3 9 579 600 [mm9:8:122481249-122481270:+] 0.6478 120 0 -11.77 -0.1744 MIMAT0004874 mmu-miR-465c-3p 22224 Usp10 agaugaaucuuuccGGGACUag |||||| uuguaacuuuauuaCCCUGAaa 3 9 579 600 [mm9:8:122481249-122481270:+] 0.6478 120 0 -11.77 -0.1744 MIMAT0004893 mmu-miR-574-5p 22224 Usp10 uguguGAGUGUGUGUGUGUGAGu :| |: ||: ||||||| uuuuuUUAAUUCAU-CACACUCu 2 19 348 369 [mm9:8:122481018-122481039:+] 0.6185 148 7 -14.43 -1.1271 MIMAT0004898 mmu-miR-654-3p 22224 Usp10 uuccacuaccagucGUCUGUAu ||||||| uagacaccgcggguCAGACAUg 2 9 526 547 [mm9:8:122481196-122481217:+] 0.6478 140 7 -13.85 -0.1850 MIMAT0005843 mmu-miR-1188 22224 Usp10 aggaccGGGUUG---GAGUG-UGGu |||||| ||||| ||| acaguuCCCAACUCACUCACUACCc 2 16 40 64 [mm9:8:122480710-122480734:+] 0.4800 122 0 -20.15 -0.2487 MIMAT0005847 mmu-miR-1190 22224 Usp10 cuGU-CUCCCCU-UGGAGU-CGACu || | ||| | || ||| |||| gaCAUGUGGGUAGACGUCAGGCUGc 2 21 542 566 [mm9:8:122481212-122481236:+] 0.6478 122 0 -20.93 -0.4395 MIMAT0005858 mmu-miR-1197 22224 Usp10 ucuuCAU-CUGGUACACA-GGAu ||: | ||:||||| ||| gcccGUGUGCCCGUGUGUGCCUg 2 18 5 27 [mm9:8:122480675-122480697:+] 0.5961 124 0 -19.70 -0.2916 MIMAT0005859 mmu-miR-1198 22224 Usp10 gguucGGUCGGUCCUUGUGUAu |:| : :| ||||||| gguucCUAAUAGGAAACACAUu 2 18 474 495 [mm9:8:122481144-122481165:+] 0.5876 149 7 -17.58 -0.8858 MIMAT0009390 mmu-miR-1927 22224 Usp10 agUCAGGGAUUGUAGGUCUCCAg || | : |: | ||||||| guAGACGUCAGGCUGCAGAGGUg 2 22 551 573 [mm9:8:122481221-122481243:+] 0.6478 149 7 -16.60 -0.2072 MIMAT0009392 mmu-miR-1929 22224 Usp10 gagacgAGAUAUUUCAGGAUCUu | ||| :| ||||||: acacagUGUAUUGAUUCCUAGGa 2 18 722 744 [mm9:8:122481392-122481414:+] 0.6296 141 0 -12.01 -0.1021 MIMAT0009405 mmu-miR-1941-5p 22224 Usp10 uuCGGA-GACAUGGUCGUAGAGGGa |:|| ||||: :| ||||||| guGUCUGCUGUG-UA--AUCUCCCg 2 23 669 690 [mm9:8:122481339-122481360:+] 0.6193 152 7 -23.15 -0.3290 MIMAT0009424 mmu-miR-1953 22224 Usp10 guCUUCGGACUCUUGAAAGGGu ||| ::| | ||||||: auGAAUUUU---AUCUUUCCUu 2 21 319 337 [mm9:8:122480989-122481007:+] 0.6097 128 0 -14.21 -0.3299 MIMAT0009427 mmu-miR-669n 22224 Usp10 uguguguagguguGUGUUUa |||||| caucaauaaagauCACAAAg 2 8 761 780 [mm9:8:122481431-122481450:+] 0.6398 120 6 -7.01 -0.1792 MIMAT0009431 mmu-miR-1958 22224 Usp10 ugaaugacgAAGGU-GAAAGGAu ||::| ||||||| gaaaaugaaUUUUAUCUUUCCUu 2 14 315 337 [mm9:8:122480985-122481007:+] 0.6097 148 7 -11.64 -1.2948 MIMAT0009460 mmu-miR-1982.1 22224 Usp10 gacacccucuuguauCCCACUCu ||||||| gcuggacuguugccuGGGUGAGg 2 9 169 191 [mm9:8:122480839-122480861:+] 0.5222 140 7 -19.31 -0.1269 MIMAT0011221 mmu-miR-2145 22224 Usp10 uugguccGGGCUGGGACGa |:: ||||||: ucuccucCUUUACCCUGUa 2 13 367 385 [mm9:8:122481037-122481055:+] 0.6272 128 0 -14.39 -0.2196 MIMAT0011221 mmu-miR-2145 22224 Usp10 uugguccgggcUGGGACga |||||| guaacuuuauuACCCUGaa 3 9 581 599 [mm9:8:122481251-122481269:+] 0.6478 120 0 -12.02 -0.1950 MIMAT0012774 mmu-miR-664 22224 Usp10 auccgacccCUCAUUUACUUAu | | |||||||| uguaaauuuGUGAAAAUGAAUu 2 14 304 325 [mm9:8:122480974-122480995:+] 0.6097 149 7 -6.23 -1.1357 MIMAT0015641 mmu-miR-3470b 22224 Usp10 gguCGGACCAGAUGUCU-CACu |:| || ||:|||| ||| gacGUCAGG-CUGCAGAGGUGg 2 19 554 574 [mm9:8:122481224-122481244:+] 0.6478 124 0 -20.94 -0.2325 MIMAT0015645 mmu-miR-3473 22224 Usp10 ccgacucGGUAGAGAGGu ::||||:||| augaauuUUAUCUUUCCu 2 12 319 336 [mm9:8:122480989-122481006:+] 0.6097 131 0 -13.61 -0.1126 MIMAT0000123 mmu-miR-1 22224 Usp10 uaUGU-AUGAAGAAAUGU-AAGGu ||: |:|||| |||| |||| ugACGCUGCUUC-CUACAGUUCCc 2 21 26 48 [mm9:8:122480696-122480718:+] 0.4800 125 0 -14.74 -0.3648 MIMAT0000150 mmu-miR-138 22224 Usp10 gccggACUAAGUGUUGUGGUCGa | | || | :||||||| uggaaUAAGUC-CCGCACCAGCa 2 19 277 298 [mm9:8:122480947-122480968:+] 0.6097 148 7 -18.11 -0.4164 MIMAT0000159 mmu-miR-149 22224 Usp10 cccUCACU-UCUGUGCCUCGGUCu | ||| | | || ||||||| auaAAUGACAAAAAC-GAGCCAGu 2 21 393 415 [mm9:8:122481063-122481085:+] 0.5944 153 7 -16.59 -0.3172 MIMAT0000209 mmu-miR-129-5p 22224 Usp10 cguucgggucuggcGUUUUUc |||||| aaaggaaauaaauaCAAAAAa 2 8 442 462 [mm9:8:122481112-122481132:+] 0.5746 120 6 -3.96 -0.2400 MIMAT0000214 mmu-miR-185 22224 Usp10 agUCCUUGACGGAAAGAGAGGu | |||:| :| |||:||| aaAUGAAUU--UUAUCUUUCCu 2 21 317 336 [mm9:8:122480987-122481006:+] 0.6097 137 0 -11.34 -0.1092 MIMAT0000224 mmu-miR-194 22224 Usp10 agGUGUACCUCAACGACA-AUGu ||||| | |||||| ||| auCACAUUCA--UGCUGUGUACa 2 21 610 630 [mm9:8:122481280-122481300:+] 0.6335 125 0 -17.70 -0.6736 MIMAT0000225 mmu-miR-195 22224 Usp10 cgGUUAUAAAGACAC-GACGAu |||| | | ||| ||||| gaCAAU-UCCCAGUGUCUGCUg 2 20 658 678 [mm9:8:122481328-122481348:+] 0.6193 121 0 -14.06 -0.5219 MIMAT0000236 mmu-miR-203 22224 Usp10 gaucaccaGGA--UUUGUAAAGUg ||| ||| |||||| uuuauuacCCUGAAAAGAUUUCAa 2 15 586 609 [mm9:8:122481256-122481279:+] 0.6478 125 6 -11.19 -0.2516 MIMAT0000239 mmu-miR-206 22224 Usp10 ggUGUG-UGAAGGAAUGU-AAGGu ||:| :||||| |||| |||| ugACGCUGCUUCC-UACAGUUCCc 2 21 26 48 [mm9:8:122480696-122480718:+] 0.4800 133 0 -21.32 -0.3678 MIMAT0000656 mmu-miR-139-5p 22224 Usp10 gaccucugugcacguGACAUCu |||||| cucuccuccuuuaccCUGUAGu 2 8 366 387 [mm9:8:122481036-122481057:+] 0.6272 120 6 -8.74 -0.1021 MIMAT0000766 mmu-miR-335-5p 22224 Usp10 uguaaaaagcaauaaCGAGAACu ||||||| agucccgcaccagcaGCUCUUGu 2 9 284 306 [mm9:8:122480954-122480976:+] 0.6097 140 7 -11.77 -0.7773 MIMAT0003128 mmu-miR-485 22224 Usp10 cuuaAGUAG-UGCCGGU-CGGAGa | ||| | |||| ||||| ugugUAAUCUCCCGCCACGCCUCu 2 19 677 700 [mm9:8:122481347-122481370:+] 0.6193 121 0 -19.11 -0.1839 MIMAT0003188 mmu-miR-503 22224 Usp10 gacGUCAUGACAAGG---GCGACGAu | ||: ||| || ||||||| ugcCCGUG-UGUGCCUGACGCUGCUu 2 21 12 36 [mm9:8:122480682-122480706:+] 0.4800 149 7 -19.90 -0.4242 MIMAT0003730 mmu-miR-592 22224 Usp10 uguaGUAGCGUAUAACU-GUGUUa |||| ||| || ||||| caccCAUC-AAUAAAGAUCACAAa 2 20 757 779 [mm9:8:122481427-122481449:+] 0.6398 121 0 -9.34 -0.8138 MIMAT0003453 mmu-miR-497 22224 Usp10 auGUUUGGUGUC-A-CACGAC-GAc || | |:||| | |||||| || cgCACAGCGCAGCUCGUGCUGACUg 2 21 135 159 [mm9:8:122480805-122480829:+] 0.5873 126 0 -22.72 -0.1436 MIMAT0003486 mmu-miR-491 22224 Usp10 ggAGUACCUUCCCAAGGG-GUGa | :||||| |||| ||| cgUAGUGGAAUAAGUCCCGCACc 2 21 272 294 [mm9:8:122480942-122480964:+] 0.6097 120 0 -17.75 -0.5983 MIMAT0004847 mmu-miR-882 22224 Usp10 ugaUUACGCGAUUGAGAGAGGa |||| :| |||:||| gaaAAUGAAUUUUAUCUUUCCu 2 20 315 336 [mm9:8:122480985-122481006:+] 0.6097 135 0 -15.35 -0.1103

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G061334 Usp10 Mus musculus 22224

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Usp10 mmu-miR-1941-5p beg:672 end:690 pic:3' TTCGGA-GACATGGTCGTAGAGGGA 5'& || ||||.. ||||||| &5' ----CTGCTGTGTA---ATCTCCC- 3' Usp10 mmu-miR-138 beg:283 end:298 pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& || | .||||||| &5' ---------TC-CCGCACCAGC- 3' Usp10 mmu-miR-654-3p beg:533 end:559 pic:3' TTCCA--CTAC-CAGTCGTCTGTAT 5'& .||| || || .|.||||.| &5' -GGGTCAGACATGTGGGTAGACGT- 3' Usp10 mmu-miR-1927 beg:554 end:573 pic:3' AGTCAGGGATTGTAGGTCTCCAG 5'& ||| ..| | ||||||| &5' ---GTCA--GGC-TGCAGAGGT- 3' Usp10 mmu-miR-147 beg:125 end:141 pic:3' ATCGTCTTCGTAAAGGCGTGTG 5'& ||.| ||||||| &5' -----GAGGGC---CCGCACA- 3' Usp10 mmu-miR-675-5p beg:285 end:296 pic:3' TGACACCCGGGAAAGGCGTGGT 5'& |||||||| &5' --------------CCGCACCA 3' Usp10 mmu-miR-22star beg:202 end:220 pic:3' ATTTCGAACGGTGACTTCTTGA 5'& || ||. ||||||||| &5' ----GCC-GCTTCTGAAGAAC- 3' Usp10 mmu-miR-3099star beg:154 end:174 pic:3' GTTCCCGACCTTC--CTTCGACC 5'& ||| |||||||| &5' ------CTGACTTCAGAAGCTGG 3' Usp10 mmu-miR-149 beg:396 end:415 pic:3' CCCTCACTTCTGTGC---CTCGGTCT 5'& |||| ||||||| &5' ---------GACAAAAACGAGCCAG- 3' Usp10 mmu-miR-2139 beg:129 end:149 pic:3' CGTCAATGGTCCTCGTCGCGTCGA 5'& .|| | |||||||||| &5' ------GCCCGCA-CAGCGCAGCT 3' Usp10 mcmv-miR-m108-1star beg:138 end:152 pic:3' GTAAAGCCCGCCAACGAGCACT 5'& ||| ||||||| &5' --------GCGCA-GCTCGTG- 3' Usp10 mmu-miR-335-5p beg:296 end:306 pic:3' TGTAAAAAGCAATAACGAGAACT 5'& ||||||| &5' ---------------GCTCTTG- 3' Usp10 mmu-miR-1982.1 beg:172 end:191 pic:3' GACACCCTCTTGTATCCCACTCT 5'& |||| .| |||||||. &5' CTGTT-----GCCT-GGGTGAGG 3' Usp10 mmu-miR-1198 beg:475 end:495 pic:3' GGTTCGGTCGGTCC-TTGTGTAT 5'& || .||| ||||||| &5' -----CCTAATAGGAAACACAT- 3' Usp10 mmu-miR-122 beg:358 end:370 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& ||||||||. &5' ------------TCACACTCT- 3' Usp10 mmu-miR-132 beg:160 end:180 pic:3' GCTGGTAC-CGACATCTGACAAT 5'& .|| |||| |||||||. &5' ---TCAGAAGCTG--GACTGTTG 3' Usp10 mmu-miR-139-5p beg:71 end:87 pic:3' GACCTCTGTGCA-CGTGACATCT 5'& || || ||||||| &5' ----------GTGGCTCTGTAGA 3' Usp10 mmu-miR-142-3p beg:474 end:493 pic:3' AGGTATTTCATCCTTTGTGATGT 5'& ||| ||| |||||||||| &5' TCC-TAA--TAGGAAACAC---- 3' Usp10 mmu-miR-151-3p beg:246 end:268 pic:3' GGAGTTC--CTCGGAGTCAGATC 5'& |||. | |.| ||||||. &5' -CTCGCACCGTGTCCCAGTCTG- 3' Usp10 mmu-miR-15b beg:459 end:475 pic:3' ACATTTGGTACTACACGACGAT 5'& ||||. ||.||||. &5' ---AAACT------TGTTGCTG 3' Usp10 mmu-miR-17star beg:554 end:569 pic:3' GATGTTCACGGGAGTGACGTCA 5'& |.| .|||||| &5' --------GTCAG-GCTGCAG- 3' Usp10 mmu-miR-1896 beg:409 end:428 pic:3' GAGGAGTGGGTGGTAGTCTCTC 5'& || .| |||.||||| &5' -----CAGTCGTCATTAGAGA- 3' Usp10 mmu-miR-1907 beg:463 end:474 pic:3' TGGAGGTCTAGGAGACGACGAG 5'& .||.|||| &5' -------------TTGTTGCT- 3' Usp10 mmu-miR-1929 beg:724 end:745 pic:3' GAGACGAGATATTTCAGGATCTT 5'& |. ||| .| ||||||.| &5' ----GTG-TATTGATTCCTAGGA 3' Usp10 mmu-miR-1948 beg:7 end:29 pic:3' GACATGCTCACGAGACGGATTT 5'& |||.| |||. |||||.| &5' -TGTGCCCGTGTG-TGCCTGA- 3' Usp10 mmu-miR-1958 beg:316 end:337 pic:3' TGAATGACGAAGGT-GAAAGGAT 5'& |. ||..| ||||||| &5' ----ATGAATTTTATCTTTCCT- 3' Usp10 mmu-miR-200b beg:727 end:749 pic:3' AGTAG-TAATGGTCCGTCATAAT 5'& .||. ||| |.||| ||||| &5' -TATTGATTCCTAGG-AGTAT-- 3' Usp10 mmu-miR-203 beg:591 end:609 pic:3' GATCACCAGGATTTG--TAAAGTG 5'& |||.|| |||||| &5' --------CCTGAAAAGATTTCA- 3' Usp10 mmu-miR-203star beg:209 end:225 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& ||| |||||||.|| &5' -------CTG--AAGAACCGCT 3' Usp10 mmu-miR-20bstar beg:549 end:569 pic:3' GATCTTCACGAGTGTGACGTCA 5'& |||| | ||| .|||||| &5' -TAGACG---TCAGGCTGCAG- 3' Usp10 mmu-miR-210 beg:703 end:725 pic:3' AGTCGGCGACAGT--GTGCGTGTC 5'& |||| |||| ||||.||| &5' ---GCCG-TGTCCCCCACGTACA- 3' Usp10 mmu-miR-2136 beg:748 end:762 pic:3' GTGTAGAGTCAGTTGTGGGTC 5'& |||.. |||||| &5' --------AGTTGTCACCCA- 3' Usp10 mmu-miR-2140 beg:87 end:104 pic:3' TGGTGGTTCTAGACGTGGA 5'& || || |||||.|| &5' ACTCCC----TCTGCGCC- 3' Usp10 mmu-miR-214 beg:666 end:680 pic:3' TGACGGACAGACACGGACGACA 5'& |||.||||||| &5' -----------GTGTCTGCTGT 3' Usp10 mmu-miR-2146 beg:54 end:74 pic:3' GTGTACCTTGGGA--AGAGGTG 5'& ||| |||| ||||.| &5' CACT----ACCCACCTCTCTA- 3' Usp10 mmu-miR-218 beg:177 end:197 pic:3' TGTACCAATCTAGTTCGTGTT 5'& .| ||| || .||||| &5' GCCTGGGT-GAG--GGCACA- 3' Usp10 mmu-miR-218 beg:627 end:649 pic:3' TGTACCAATCTAGTTCGTGTT 5'& ||||| || ..|||||| &5' ACATGAACAGT--GGGCACAA 3' Usp10 mmu-miR-223 beg:639 end:662 pic:3' ACCCCATAAACTGTTTGACTGT 5'& ||| ||| .||||||| &5' -GGGCACAATGATGGACTGACA 3' Usp10 mmu-miR-297b-5p beg:705 end:725 pic:3' TGTACAAGTACGT---GTGTATGTA 5'& |.||. |||.|||| &5' -------CGTGTCCCCCACGTACA- 3' Usp10 mmu-miR-298 beg:81 end:101 pic:3' CCCTTCTTGTC-GGGAGGAGACGG 5'& |||. || |.| ||||||| &5' ----AGAG-AGACTC-CCTCTGC- 3' Usp10 mmu-miR-30c-2star beg:30 end:50 pic:3' TCTCATTTGTCGGAA---GAGGGTC 5'& .| ||| .||||| &5' -------GCTTCCTACAGTTCCCA- 3' Usp10 mmu-miR-322 beg:453 end:475 pic:3' AGGTTTTGTACTTAACGACGAC 5'& ||||| |||.||||| &5' --CAAAAAAAAC-TTGTTGCTG 3' Usp10 mmu-miR-327 beg:701 end:722 pic:3' TAGGAGTACGGGGAGTTCA 5'& || | |.||.||| || || &5' ATGC-CGTGTCCCCCACGT 3' Usp10 mmu-miR-328 beg:552 end:577 pic:3' TGCCTTCC--CGTCTCT-CCCGGTC 5'& ||| ||| ||||||. |||. &5' ACGTCAGGCTGCAGAGGTGGGT--- 3' Usp10 mmu-miR-330star beg:92 end:113 pic:3' AGAGACGTCCGGG-ACACGAAACG 5'& |||||| |||| || |||| &5' -CTCTGC--GCCCGTGGGCTT--- 3' Usp10 mmu-miR-338-3p beg:761 end:785 pic:3' GTTG-TTTTAGTGACTACGACCT 5'& |||. ||.||||| |.||| &5' CAATAAAGATCACAAA-GTTGG- 3' Usp10 mmu-miR-3473 beg:60 end:74 pic:3' CCGACTCGGTAGAGAGGT 5'& ||| |||||.| &5' -------CCACCTCTCTA 3' Usp10 mmu-miR-34a beg:20 end:36 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& || |||.||||. &5' -------GCCT-GACGCTGCT- 3' Usp10 mmu-miR-361 beg:376 end:397 pic:3' CATGGGGACCTCTAAGACTATT 5'& ||||| || ||.|||||| &5' ----CCCTGTAGTTTTTGATAA 3' Usp10 mmu-miR-361 beg:692 end:707 pic:3' CATGGGGACCTCTAAGACTATT 5'& .||.| ||||||. &5' --GCCTC-------TCTGATG- 3' Usp10 mmu-miR-363 beg:664 end:685 pic:3' ATGTCTACCTATGGCACGTTAA 5'& ||| || |.|.|||.||| &5' --CAG-TGTCTGCTGTGTAAT- 3' Usp10 mmu-miR-383 beg:247 end:271 pic:3' TCGGTGT-CAGTGGA-AGACTAGA 5'& || |. ||| || ||||||| &5' -GCACCGTGTC-CCAGTCTGATC- 3' Usp10 mmu-miR-384-3p beg:724 end:747 pic:3' TAACACTT-GTTAAAGATCCTTA 5'& ||| ..||| ||||||.| &5' ---GTGTATTGATTCCTAGGAGT 3' Usp10 mmu-miR-450a-3p beg:29 end:51 pic:3' TACTTACGTTTCG---TAGGGGTTA 5'& ||| .|.||||| &5' -----TGCTTCCTACAGTTCCCAA- 3' Usp10 mmu-miR-450b-3p beg:29 end:51 pic:3' TACGTACGTTTTA---CAAGGGTTA 5'& || ||| |||||||| &5' --GC-TGCTTCCTACAGTTCCCAA- 3' Usp10 mmu-miR-450b-5p beg:555 end:571 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& ||||| |||||.|. &5' ---TCAGG------CTGCAGAG 3' Usp10 mmu-miR-455 beg:14 end:35 pic:3' CACATATACGGGCACCTGACG 5'& ||.|.||||.| .|||| &5' --GTGTGTGCCTGAC-GCTGC 3' Usp10 mmu-miR-466c-5p beg:615 end:634 pic:3' ATACATGTACG-TGTGTGTGTAG 5'& ||||| . .|||||| &5' ------CATGCTGTGTACACAT- 3' Usp10 mmu-miR-467c beg:626 end:647 pic:3' GTGTATATGTACGTGCGTGAAT 5'& |||||. ||| |.. |||| &5' CACATGAACA-GTGGGCAC--- 3' Usp10 mmu-miR-497 beg:459 end:475 pic:3' ATGTTTGGTGTCACACGACGAC 5'& ||||. ||.||||| &5' ---AAACT------TGTTGCTG 3' Usp10 mmu-miR-503 beg:15 end:36 pic:3' GACGTCAT-GACAAGGGCGACGAT 5'& ||. ||. ||| ||||||| &5' -TGT-GTGCCTGA---CGCTGCT- 3' Usp10 mmu-miR-542-5p beg:578 end:599 pic:3' AGCACTGTACTACTAGGGGCTC 5'& |.|| || |||.|| &5' TTGTAACTTTATTA-CCCTGA- 3' Usp10 mmu-miR-669a beg:627 end:650 pic:3' TGTACTTGTACGTGTGTGTTGA 5'& ||||||||| |.. .|||||. &5' ACATGAACA-GTGGGCACAAT- 3' Usp10 mmu-miR-671-5p beg:60 end:82 pic:3' GAGGTCGGGGAGGTC-CCGAAGGA 5'& ||| ||.|||.|| ||| ||. &5' --CCA-CCTCTCTAGTGGC-TCT- 3' Usp10 mmu-miR-684 beg:498 end:517 pic:3' AACTGAACTTC-CCTTTTGA 5'& ||.| .|| ||.|||| &5' --GATTACGAGAGGGAAAC- 3' Usp10 mmu-miR-702 beg:558 end:577 pic:3' CTCGCCCCATTTC-CCACCCGT 5'& || |. || ||||||. &5' -----GGCTGCAGAGGTGGGT- 3' Usp10 mmu-miR-705 beg:52 end:72 pic:3' ACGGGTG--GGGTGGAGGGTGG 5'& |.||| ||||||||.| &5' --CTCACTACCCACCTCTC--- 3' Usp10 mmu-miR-710 beg:93 end:115 pic:3' GAGTTGAGAGGGGTTCTGAACC 5'& ||| .| ||| .|.||||| &5' CTCTGCG--CCCGTGGGCTTGG 3' Usp10 mmu-miR-741 beg:318 end:335 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& |||| .||||.|| &5' --------GAATTTTATCTTTC- 3' Usp10 mmu-miR-744 beg:274 end:293 pic:3' ACGACAATCGGGATCGGGGCGT 5'& |.| . ||.|||||| &5' ------TGGAATAAGTCCCGCA 3' Usp10 mmu-miR-764-5p beg:533 end:554 pic:3' TCCTC-CTGTACACTCGTGG 5'& .|| ||||||||.|.| &5' GGGTCAGACATGTGGGTA-- 3' Usp10 mmu-miR-802 beg:463 end:476 pic:3' TTCCTACTTAGAAACAATGACT 5'& |||||.|||. &5' ------------TTGTTGCTGG 3' Usp10 mmu-miR-874 beg:174 end:195 pic:3' AGCCAG-GGAGCCCGGTCCCGTC 5'& ||. ||| |||. |||||| &5' ---GTTGCCT-GGGTGAGGGCA- 3' Usp10 mmu-miR-92a beg:665 end:685 pic:3' GTC-CGGCCCTGTTCACGTTAT 5'& ||| |.| .| |||.||| &5' CAGTGTCT--GCT-GTGTAAT- 3' Usp10 mmu-miR-455 beg:166 end:179 pic:3' CACATATACGGGCACCTGACG 5'& || |||||||. &5' --------GC---TGGACTGT 3' Usp10 mmu-miR-455 beg:640 end:659 pic:3' CACATATACGG---GC-ACCTGACG 5'& || .| ||||||| &5' --------GCACAATGATGGACTG- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp10 RAID00316125 mmu-miR-139-5p miRNA MIMAT0000656 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID00519340 mmu-miR-325-3p miRNA MIMAT0004640 Usp10 mRNA 22224 Prediction 0.2202 Usp10 RAID00555690 mmu-miR-882 miRNA MIMAT0004847 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID00702163 mmu-miR-206-3p miRNA MIMAT0000239 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID00839800 mmu-miR-194-5p miRNA MIMAT0000224 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID00981782 mmu-miR-6715-5p miRNA MIMAT0029876 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID00986059 mmu-mir-325 miRNA MI0000597 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID01029219 mmu-miR-138-5p miRNA MIMAT0000150 Usp10 mRNA 22224 Prediction 0.2381 Usp10 RAID01117497 mmu-miR-6961-5p miRNA MIMAT0027822 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID01455664 mmu-miR-1a-3p miRNA MIMAT0000123 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID01534875 mmu-miR-1958 miRNA MIMAT0009431 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID01630679 mmu-miR-149-5p miRNA MIMAT0000159 Usp10 mRNA 22224 NGS (Next Generation Sequencing)//Prediction 0.6478 Usp10 RAID02424580 mmu-miR-142a-5p miRNA MIMAT0000154 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID02597194 mmu-miR-491-5p miRNA MIMAT0003486 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID02634803 mmu-miR-574-5p miRNA MIMAT0004893 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID02685319 mmu-miR-6986-3p miRNA MIMAT0027875 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID02701736 mmu-miR-3100-5p miRNA MIMAT0014919 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID02894834 mmu-miR-485-5p miRNA MIMAT0003128 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID03046370 mmu-miR-185-5p miRNA MIMAT0000214 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID03088380 mmu-miR-881-3p miRNA MIMAT0004846 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID03159270 mmu-miR-592-5p miRNA MIMAT0003730 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID03380601 mmu-miR-129-5p miRNA MIMAT0000209 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID03409190 mmu-miR-335-5p miRNA MIMAT0000766 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID03409354 mmu-miR-7051-3p miRNA MIMAT0028007 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID03470562 mmu-miR-350-3p miRNA MIMAT0000605 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID03547129 mmu-miR-195a-5p miRNA MIMAT0000225 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID03547414 mmu-miR-203-3p miRNA MIMAT0000236 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID03812262 mmu-miR-497a-5p miRNA MIMAT0003453 Usp10 mRNA 22224 Prediction 0.1828 Usp10 RAID03957883 mmu-miR-503-5p miRNA MIMAT0003188 Usp10 mRNA 22224 Prediction 0.1828