DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000137 mmu-miR-126-5p 234664 Nae1 gcgcaugguuuucAUUAUUac |||||| uaaauuguuuccuUAAUAAaa 3 9 93 113 [mm9:8:107034945-107034965:-] 0.5783 120 0 -3.25 -0.1175 MIMAT0004578 mmu-miR-300* 234664 Nae1 ugUUUCCUAUUGGAGAGAAGUu :|| :||| :| |||||| ugGAACUGUAA-UUGUCUUCAu 2 21 31 51 [mm9:8:107035007-107035027:-] 0.5560 126 6 -9.97 -0.2040 MIMAT0000551 mmu-miR-323-3p 234664 Nae1 ucuCCAGCUGGCACAUU-ACAc |||:|: ||||| ||| aauGGUUGGAACUGUAAUUGUc 2 19 25 46 [mm9:8:107035012-107035033:-] 0.5560 122 0 -13.68 -0.8690 MIMAT0000569 mmu-miR-330* 234664 Nae1 agAGACGUCCGGGACACGAAACg ||| || : :||||||||| ugUCUUCA--UAUUGUGCUUUGg 2 22 43 63 [mm9:8:107034995-107035015:-] 0.5408 158 7 -17.77 -0.7978 MIMAT0004647 mmu-miR-338-5p 234664 Nae1 gugAGUCGUGGUCCUAUAACAa | | :::| ||||||| cugUAAUUGUCUUCAUAUUGUg 2 20 36 57 [mm9:8:107035001-107035022:-] 0.5560 143 7 -5.49 -0.6036 MIMAT0004665 mmu-miR-218-1* 234664 Nae1 ccacgaacugcCUUGGUACAaa | ||||||| ------aauaaGCACCAUGUgu 3 12 1 16 [mm9:8:107035042-107035057:-] 0.6346 127 0 -8.67 -0.5384 MIMAT0004670 mmu-miR-7a* 234664 Nae1 auaccgucuGACACUAAACAac :| | |||||| uaaaaguuuUUCUCAUUUGUaa 3 14 109 130 [mm9:8:107034928-107034949:-] 0.5783 125 0 -2.20 -0.2356 MIMAT0003373 mmu-miR-302b* 234664 Nae1 ucuuucguaaggguACAAUUUCa |||||||| gguuuguaaaaaucUGUUAAAGg 2 10 62 84 [mm9:8:107034974-107034996:-] 0.5408 145 7 -9.94 -0.7956 MIMAT0003375 mmu-miR-302c* 234664 Nae1 cgucCAUUGGGGUACAAUUUCg |||| : |||||||| guuuGUAAAAAUCUGUUAAAGg 2 19 63 84 [mm9:8:107034974-107034995:-] 0.5408 154 7 -13.72 -0.7956 MIMAT0003376 mmu-miR-302c 234664 Nae1 ggugacuuuguaccUUCGUGaa |||||| -----------aauAAGCACca 3 9 1 11 [mm9:8:107035047-107035057:-] 0.6980 120 0 -9.02 -0.2084 MIMAT0004238 mmu-miR-743a 234664 Nae1 agaugagucgaaccACAGAAag |||||| guuggaacuguaauUGUCUUca 3 9 29 50 [mm9:8:107035008-107035029:-] 0.5560 120 0 -8.65 -0.2966 MIMAT0004840 mmu-miR-743b-3p 234664 Nae1 agauaagUCGUACU-ACAGAAag | ::| | |||||| gguuggaACUGUAAUUGUCUUca 3 16 28 50 [mm9:8:107035008-107035030:-] 0.5560 122 0 -9.45 -0.2941 MIMAT0004882 mmu-miR-466f-3p 234664 Nae1 cacacauacacacACACAUac |||||| --aauaagcaccaUGUGUAau 3 9 1 19 [mm9:8:107035039-107035057:-] 0.6346 120 0 -5.31 -0.1398 MIMAT0005291 mmu-miR-582-5p 234664 Nae1 ucAUUGACCAACUUGUUGACAu ||| |||||| |||||| guUAA-UGGUUG--GAACUGUa 2 21 22 40 [mm9:8:107035018-107035036:-] 0.5713 131 6 -18.34 -0.1539 MIMAT0005834 mmu-miR-466i 234664 Nae1 aucacacauacacacACACAUa |||||| ----aauaagcaccaUGUGUAa 2 8 1 18 [mm9:8:107035040-107035057:-] 0.6346 120 6 -5.51 -0.4307 MIMAT0005852 mmu-miR-1194 234664 Nae1 uccuagaucgucaauGAGUAAg |||||| uuaauaaaaguuuuuCUCAUUu 2 8 105 126 [mm9:8:107034932-107034953:-] 0.5783 120 6 -10.47 -0.2517 MIMAT0005858 mmu-miR-1197 234664 Nae1 ucUUCAUCUGGUACACAGGAu |||| | : ||| |||| ggAAGUUAAAU-UGUUUCCUu 2 20 87 106 [mm9:8:107034952-107034971:-] 0.5595 121 0 -13.15 -0.1044 MIMAT0009431 mmu-miR-1958 234664 Nae1 ugaaugacgaaggugAAAGGAu |||||| acggaaguuaaauugUUUCCUu 2 8 85 106 [mm9:8:107034952-107034973:-] 0.5595 120 6 -10.27 -0.3490 MIMAT0000663 mmu-miR-218 234664 Nae1 uguaccaaucUAGUUCGUGuu | :|||||| ----------AAUAAGCACca 3 12 1 11 [mm9:8:107035047-107035057:-] 0.6980 123 0 -7.71 -0.2084 MIMAT0000677 mmu-miR-7a 234664 Nae1 uguugUUUUA-GUGAUCAGAAGgu :|| | :| | |||||| gguugGAACUGUAAUUGUCUUCau 3 19 28 51 [mm9:8:107035007-107035030:-] 0.5560 129 0 -9.75 -0.1690 MIMAT0000678 mmu-miR-7b 234664 Nae1 uguuGUUUUAGUGUU--CAGAAGgu :::|| :::|| |||||| ugguUGGAACUGUAAUUGUCUUCau 3 20 27 51 [mm9:8:107035007-107035031:-] 0.5560 130 0 -9.09 -0.1690 MIMAT0003182 mmu-miR-494 234664 Nae1 cuccaaagggcacauACAAAGu |||||| ggacggaaguuaaauUGUUUCc 2 8 83 104 [mm9:8:107034954-107034975:-] 0.5595 120 6 -6.77 -0.2094 MIMAT0003456 mmu-miR-495 234664 Nae1 uucuUCACGUGGUA-CAAACAaa | ||::|: | |||||| ucauAUUGUGCUUUGGUUUGUaa 3 19 48 70 [mm9:8:107034988-107035010:-] 0.5408 133 0 -10.22 -0.1013 MIMAT0005850 mmu-miR-1192 234664 Nae1 uuaAACCAGACAAACAAACAaa ||| || || |||||| auaUUGUGCU-UUGGUUUGUaa 3 20 50 70 [mm9:8:107034988-107035008:-] 0.5408 137 0 -10.24 -0.1023

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G042643 Nae1 Mus musculus 234664

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Appbp1 mmu-miR-139-3p beg:29 end:51 pic:3' GAGGTTGTCCC-GGCG----CAGAGGT 5'& || |.|. ||||.|| &5' --------GGAACTGTAATTGTCTTCA 3' Appbp1 mmu-miR-302cstar beg:64 end:84 pic:3' CGTCCATTGG-GGTACAATTTCG 5'& |||| .| |||||||| &5' ----GTAAAAATC-TGTTAAAG- 3' Appbp1 mmu-miR-32 beg:3 end:21 pic:3' ACGTTGAATCATTACACGTTAT 5'& ||| | |||||.|||| &5' -GCACC------ATGTGTAATA 3' Appbp1 mmu-miR-330star beg:42 end:63 pic:3' AGAGACGTCCGGGACACGAAACG 5'& ||| || .||||||||| &5' --TCTTCATA--TTGTGCTTTG- 3' Appbp1 mmu-miR-367 beg:4 end:20 pic:3' AGTGGTAACGATTTCACGTTAA 5'& |||||| |||.||| &5' -CACCAT-------GTGTAAT- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Nae1; Appbp1 mmu-miR-124a 43 64 CCGUAAGUGGCGCACGGAAU- |: ||||: :||||:||: UGUCUUCAUAUUGUGCUUUGG Nae1; Appbp1 mmu-miR-330 35 64 AGAGACGUC--CGGG------ACACGAAACG |||:| |:|: ||||||||| --ACUGUAAUUGUCUUCAUAUUGUGCUUUGG Nae1; Appbp1 mmu-miR-340 61 91 -CC-GAUAUUUCAUUGAC-----UCUGCCU- || :|:|||| ||| :|||||| UGGUUUGUAAAAAU-CUGUUAAAGGACGGAA Nae1; Appbp1 mmu-miR-676 61 90 -UCGAGUUG--UUGGAG----UCCUGCC- :|:|:: ||:|| ||||||| UGGUUUGUAAAAAUCUGUUAAAGGACGGA Nae1; Appbp1 mmu-miR-330 56 63 AGA------------GACGUC--CGG------GACACGAAACG |||:| |:| :||||||||| UGUUAAUGGUUGGAACUGUAAUUGUCUUCAUAUUGUGCUUUGG Nae1; Appbp1 mmu-miR-330 43 63 AGAGACGUCCGGGACACGAAACg | ||| || : :||||||||| TGTCTTCA--TATTGTGCTTTGg Nae1; Appbp1 mmu-miR-340 62 89 CC-GAUAUUU-----CAUUGACUCUGCCU || :|:|||| || | | |||||| GGTTTGTAAAAATCTGTTAAAG-GACGGA Nae1; Appbp1 mmu-miR-676 68 88 ucgaguuguuggagUCCUGCC ||||||| taaaaatctgttaaAGGACGG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nae1 RAID00055442 mmu-miR-7a-5p miRNA MIMAT0000677 Nae1 mRNA 234664 Prediction 0.1828 Nae1 RAID00134808 mmu-miR-582-5p miRNA MIMAT0005291 Nae1 mRNA 234664 Prediction 0.2202 Nae1 RAID01154233 mmu-miR-1192 miRNA MIMAT0005850 Nae1 mRNA 234664 Prediction 0.1828 Nae1 RAID01794493 mmu-miR-7b-5p miRNA MIMAT0000678 Nae1 mRNA 234664 Prediction 0.1828 Nae1 RAID01956749 mmu-miR-495-3p miRNA MIMAT0003456 Nae1 mRNA 234664 Prediction 0.1828 Nae1 RAID02103371 mmu-miR-7116-5p miRNA MIMAT0028129 Nae1 mRNA 234664 Prediction 0.1828 Nae1 RAID02793953 mmu-miR-494-3p miRNA MIMAT0003182 Nae1 mRNA 234664 Prediction 0.1828 Nae1 RAID03004526 mmu-miR-7025-3p miRNA MIMAT0027955 Nae1 mRNA 234664 Prediction 0.1828 Nae1 RAID03401455 mmu-miR-218-5p miRNA MIMAT0000663 Nae1 mRNA 234664 Prediction 0.1828 Nae1 RAID04052033 mmu-miR-147-5p miRNA MIMAT0017269 Nae1 mRNA 234664 Prediction 0.1828