iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

PPI - IID
Symbol 1	Symbol 2	PMID	DBs	Evidence Type	Adipose Tissue	Adrenal Gland	Amygdala	Bone	Bone Marrow	Brain	Dorsal Root Ganglia	Eye	Heart	Hindgut	Hypothalamus	Kidney	Liver	Lung	Lymph Nodes	Mammary Gland	Midgut	Neurons	Ovary	Pancreas	Pituitary Gland	Placenta	Prostate	Salivary Gland	Skeletal Muscle	Small Intestine	Spleen	Stomach	Testes	Uterus
Tnfrsf1a	Rnf111	15102471	intact	exp	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Axin2	Rnf111	16601693	mint,intact	exp	G	G	G			G		G	G	G	G		G	G	G	G	G	G	G	G	G	G	G			G	G	G		G
Axin1	Rnf111	16601693	biogrid,mint,intact	exp, ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Smad7	Rnf111	16601693	biogrid	exp, ortho	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Smad2	Rnf111	17341133	biogrid	exp, ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2g2	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Trim21	Rnf111			ortho	G	G		G	G		G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G		G
Pml	Rnf111			ortho	G	G		G	G					G		G	G	G	G	G	G		G	G	G	G	G	G		G	G	G		G
Smurf2	Rnf111			ortho
Ube2k	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Csnk2a2	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ctbp1	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Rnf111	March7			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2d2b	Rnf111			ortho																													G
Rnf111	Anapc11			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2i	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Hsp90aa1	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2m	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Sumo1	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2w	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Rnf111	Phf7			ortho	G	G		G	G	G		G	G	G		G	G	G	G	G	G	G	G	G	G		G	G	G	G	G		G	G
Ube2d2	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2d1	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2d3	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Rnf111	Ube2v1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Fhl2	Rnf111			ortho		G	G	G	G	G		G	G	G	G	G		G		G	G	G	G	G	G	G	G		G	G	G	G	G	G
Smad3	Rnf111			ortho			G		G	G				G		G		G	G	G		G	G	G	G	G			G					G
Creb1	Rnf111			ortho	G		G	G	G	G		G	G	G		G		G	G	G	G	G		G	G	G		G		G	G	G		G
Rnf111	Sumo3			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ski	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Traf5	Rnf111			ortho	G			G	G			G	G	G		G	G	G	G	G			G	G						G	G	G		G
Xpc	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Rnf111	Mvp			ortho	G	G		G	G		G	G	G	G		G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G		G
Smad6	Rnf111			ortho	G	G		G				G	G	G		G	G	G		G	G		G	G	G	G			G	G		G	G	G
Rnf111	Trim8			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G		G
Ube2n	Rnf111			ortho
Dtx3l	Rnf111			ortho
Lrsam1	Rnf111			ortho
Tsg101	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Hsp90ab1	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Rnf111	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Csnk2a1	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e1	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Sumo2	Rnf111			ortho
Skil	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Uba1	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e2	Rnf111			ortho	G	G	G			G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2q2	Rnf111			ortho
Edaradd	Rnf111			ortho									G						G					G				G			G
Rnf111	Rb1cc1			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
Ube2e3	Rnf111			ortho	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

PPI - iRefIndex
UniProt A	UniProt B	Method	PMID	Interaction Type	Edge type	Num Participants
Q99ML9	P68400-2	two hybrid	20368287	direct interaction	X	2
Q99ML9	P61956-2	enzymatic study	24912682	direct interaction	X	2
Q99ML9	E9QMJ8	two hybrid	16601693	direct interaction	X	2
Q99ML9	E9QMJ8	affinity chromatography technology	16601693	physical association	X	2
Q99ML9	E9QMJ8	affinity chromatography technology	16601693	physical association	X	2
Q99ML9		affinity chromatography technology	17341133	physical association	X	2
Q99ML9	Q96CW1-2	two hybrid	20965945	direct interaction	X	2
Q99ML9	Q96CW1-2	affinity chromatography technology	20965945	physical association	X	2
Q99ML9	P63010-3	affinity chromatography technology	20965945	physical association	X	2
Q99ML9	O94973	affinity chromatography technology	20965945	physical association	X	2
Q99ML9	P0CG48	affinity chromatography technology	20965945	physical association	X	2
Q99ML9	O00257	affinity chromatography technology	24912682	physical association	X	2
Q99ML9	O35253	affinity chromatography technology	16601693	physical association	X	2
Q99ML9	Q15796-2	affinity chromatography technology	17341133	physical association	X	2
Q99ML9	Q62432	pull down	17341133	direct interaction	X	2
Q99ML9	O35625	anti tag coimmunoprecipitation	16601693	physical association	X	2
Q99ML9	O35625	anti tag coimmunoprecipitation	16601693	physical association	X	2
Q99ML9	O35625	two hybrid	16601693	physical association	X	2
Q99ML9	O35625	pull down	16601693	physical association	X	2
Q99ML9	Q5U5J2	two hybrid	20368287	physical association	X	2
O15105	Q99ML9	anti tag coimmunoprecipitation	16601693	physical association	X	2
O15105	Q99ML9	anti tag coimmunoprecipitation	16601693	physical association	X	2
Q99ML9	P25118	two hybrid	15102471	physical association	X	2
Q99ML9	P25118	two hybrid	15102471	physical association	X	2
Q99ML9	O15169	anti tag coimmunoprecipitation	16601693	physical association	X	2
Q99ML9	O15169	anti tag coimmunoprecipitation	16601693	physical association	X	2
Q99ML9	O88566	anti tag coimmunoprecipitation	16601693	physical association	X	2
Q99ML9	O15169	anti tag coimmunoprecipitation	16601693	physical association	X	2
Q99ML9	O15169	imaging technique	16601693	colocalization	X	2
Q99ML9	O15169	anti tag coimmunoprecipitation	16601693	physical association	X	2
Q99ML9	Q9C0C9	anti tag coimmunoprecipitation	23455153	physical association	X	2

PPI - Mentha
Protein A	Protein B	Gene A	Gene B	Score	PMID
Q99ML9	Q62432	RNF111	SMAD2	0.309	17341133
Q99ML9	O88566	RNF111	AXIN2	0.21	16601693
Q99ML9	Q96CW1	RNF111	AP2M1	0.454	20965945
Q99ML9	O35625	RNF111	AXIN1	0.853	16601693
Q99ML9	O00257	RNF111	CBX4	0.21	24912682
Q99ML9	O15105	RNF111	SMAD7	0.376	16601693
Q99ML9	O15169	RNF111	AXIN1	0.309	16601693
Q99ML9	O35253	RNF111	SMAD7	0.21	16601693
Q99ML9	O94973	RNF111	AP2A2	0.21	20965945
Q99ML9	P25118	RNF111	TNFRSF1A	0.183	15102471
Q99ML9	P61956	RNF111	SUMO2	0.309	24912682
Q99ML9	P63010	RNF111	AP2B1	0.21	20965945
Q99ML9	P84022	RNF111	SMAD3	0.21	17341133
Q99ML9	Q15796	RNF111	SMAD2	0.21	17341133
Q99ML9	Q5U5J2	RNF111	CSNK2A1	0.332	20368287
Q9C0C9	Q99ML9	UBE2O	RNF111	0.126	23455153
Q99ML9	P68400	RNF111	CSNK2A1	0.183	20368287