DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Usp28; Kiaa1515 ATTTA 947-3172 3583-3587

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004519 mmu-let-7g* 235323 Usp28 cguuCCGUCACCGGACA-UGUCa |||||| :||| |||| auguGGCAGUCUGUUGUGACAGa 2 19 52 74 [mm9:9:48849706-48849728:+] 0.5988 126 0 -17.67 -0.4441 MIMAT0004519 mmu-let-7g* 235323 Usp28 cguuccgucaccggaCAUGUCa |||||| aguugcacauuuuagGUACAGa 2 8 160 181 [mm9:9:48849814-48849835:+] 0.6329 120 6 -12.44 -0.1464 MIMAT0004523 mmu-miR-29b* 235323 Usp28 auuugGUGGUAUACUUUGGUCg | ::| || ||||||| uuauaCUUUAGAU-AAACCAGa 2 18 560 580 [mm9:9:48850214-48850234:+] 0.5827 147 7 -12.58 -1.0879 MIMAT0004527 mmu-miR-124* 235323 Usp28 uaguuccaggcgacaCUUGUGc |||||| aaucaugggagggaaGAACACa 2 8 887 908 [mm9:9:48850541-48850562:+] 0.6282 120 6 -12.56 -0.1213 MIMAT0000137 mmu-miR-126-5p 235323 Usp28 gcgcauGGUUUUC-AUUAUUAc ::|| || ||||||| gaacacUUAAUAGUUAAUAAUc 2 16 665 686 [mm9:9:48850319-48850340:+] 0.5525 150 7 -4.42 -0.6634 MIMAT0000154 mmu-miR-142-5p 235323 Usp28 ucAUCACG-AAAGAUGAAAUac |:|| : ||| ||||||| uuUGGUCUGUUUAUACUUUAga 3 20 550 571 [mm9:9:48850204-48850225:+] 0.5827 142 0 -9.99 -0.1374 MIMAT0000217 mmu-miR-188-5p 235323 Usp28 gggaggugGUACGUUCCCUAc ::| :||||||| gugaugugUGUUUAAGGGAUu 2 14 131 151 [mm9:9:48849785-48849805:+] 0.6329 145 7 -10.58 -0.9472 MIMAT0000217 mmu-miR-188-5p 235323 Usp28 gggaggugguacGUUCCCUAc :||||||| uuuuaaagaaaaUAAGGGAUg 2 10 753 773 [mm9:9:48850407-48850427:+] 0.5385 141 7 -15.18 -0.8395 MIMAT0004547 mmu-miR-203* 235323 Usp28 acaacuugaCAGUUCUUGGUGa || |||||||| acauuuuagGUACAGAACCACa 2 14 166 187 [mm9:9:48849820-48849841:+] 0.6329 149 7 -13.57 -1.1833 MIMAT0004573 mmu-miR-293* 235323 Usp28 guUUUACAGUGU--GUCA-AACUCa ||| ||||| |||| ||||| gaAAACCUCACAUUCAGUCUUGAGu 2 21 579 603 [mm9:9:48850233-48850257:+] 0.5827 135 0 -17.17 -0.5997 MIMAT0004579 mmu-miR-302a* 235323 Usp28 cguuCAUGUUGGUGCAAAUUCa ||: | :::||||||| ucucGUG-AUGUGUGUUUAAGg 2 19 127 147 [mm9:9:48849781-48849801:+] 0.6329 144 7 -11.03 -0.5367 MIMAT0004616 mmu-miR-30c-1* 235323 Usp28 ccucauuuguugggAGAGGGUc ||||||| acugccuuuguaaaUCUCCCAu 2 9 255 276 [mm9:9:48849909-48849930:+] 0.5672 140 7 -12.85 -0.9531 MIMAT0005438 mmu-miR-30c-2* 235323 Usp28 ucucAUUUGUCGGA-------AGAGGGUc |:||| |||| ||||||| gaccUGAACUGCCUUUGUAAAUCUCCCAu 2 19 248 276 [mm9:9:48849902-48849930:+] 0.5672 145 7 -19.70 -0.9562 MIMAT0004617 mmu-miR-148a* 235323 Usp28 ucaGCCUCACAGAGUCUUGAAa | | | |: ||||||| aagCUGCUUUUUAAAGAACUUc 2 20 819 840 [mm9:9:48850473-48850494:+] 0.5385 143 7 -8.03 -0.9951 MIMAT0004620 mmu-let-7a* 235323 Usp28 ccUUUCUGUCAUCU-AACAUAUc ||:|: ||: | ||||||| auAAGGGAUGUGAAUUUGUAUAa 2 21 764 786 [mm9:9:48850418-48850440:+] 0.5385 155 7 -11.62 -1.2445 MIMAT0004621 mmu-let-7b* 235323 Usp28 cccUUCCGU-CA-UCCAACAUAUc |||| | || | ||||||| aauAAGGGAUGUGAAUUUGUAUAa 2 20 763 786 [mm9:9:48850417-48850440:+] 0.5385 153 7 -11.67 -1.2421 MIMAT0005439 mmu-let-7c-2* 235323 Usp28 ccUUUCUGUCAUCU-AACAUAUc ||:|: ||: | ||||||| auAAGGGAUGUGAAUUUGUAUAa 2 21 764 786 [mm9:9:48850418-48850440:+] 0.5385 155 7 -11.62 -1.2445 MIMAT0004623 mmu-let-7f* 235323 Usp28 cccUUCCGU-UAUCU-AACAUAUc |||| | :|: | ||||||| aauAAGGGAUGUGAAUUUGUAUAa 2 20 763 786 [mm9:9:48850417-48850440:+] 0.5385 153 7 -10.46 -1.2433 MIMAT0004627 mmu-miR-20a* 235323 Usp28 gaaauucacgagcauUACGUCa |||||| gaacacaauacaacuAUGCAGg 2 8 902 923 [mm9:9:48850556-48850577:+] 0.7178 120 6 -7.12 -0.1827 MIMAT0004628 mmu-miR-21* 235323 Usp28 cugucGGGUAGCUGAC-GACAAc || :|| ||| ||||| ggucuCCGGUCCCCUGCCUGUUa 2 18 30 52 [mm9:9:48849684-48849706:+] 0.6117 121 0 -16.40 -0.3177 MIMAT0004629 mmu-miR-22* 235323 Usp28 auUUCGAACGGUGACUUCUUGa || | || | ||||||| gcAAUCAUGGGAGGGAAGAACa 2 21 885 906 [mm9:9:48850539-48850560:+] 0.6282 152 7 -10.10 -0.8115 MIMAT0004630 mmu-miR-26b* 235323 Usp28 cucGGUUCAUUACC-UCUUGUcc :|| | :| || |||||| caaUCAUGGGAGGGAAGAACAca 3 20 886 908 [mm9:9:48850540-48850562:+] 0.6282 134 0 -11.16 -0.1081 MIMAT0000549 mmu-miR-322* 235323 Usp28 cacaacgucgcgaAGUACAAa ||||||| ucuaauuggaaacUCAUGUUu 2 9 839 859 [mm9:9:48850493-48850513:+] 0.5385 140 7 -8.71 -0.8255 MIMAT0000551 mmu-miR-323-3p 235323 Usp28 ucuccAGCU-GGCACAU-UACAc || | |:||||| |||| uaacaUCUAUCUGUGUAUAUGUa 2 17 791 813 [mm9:9:48850445-48850467:+] 0.5385 123 0 -11.50 -0.8848 MIMAT0004640 mmu-miR-325 235323 Usp28 aacuauccuccacgaGUUAUUu |||||| gguuuuauaaaugugCAAUAAa 2 8 922 943 [mm9:9:48850576-48850597:+] 0.7178 120 6 -6.70 -0.3616 MIMAT0000571 mmu-miR-331-3p 235323 Usp28 aagaUCCUAUCCGGGUCCCCg || | | ||||||| caucAGAACUGAGCCAGGGGa 2 18 356 376 [mm9:9:48850010-48850030:+] 0.6186 145 7 -17.89 -0.4567 MIMAT0004656 mmu-miR-345-3p 235323 Usp28 cagaggucuggGGAUCAAGUCc :| ||||||| uaguuauuuugUCAAGUUCAGg 2 12 385 406 [mm9:9:48850039-48850060:+] 0.6186 143 7 -17.10 -0.8525 MIMAT0004659 mmu-miR-10a* 235323 Usp28 auaaggggaUCUAUGCUUAAAc :|||::|||||| gaaaauaagGGAUGUGAAUUUg 2 14 760 781 [mm9:9:48850414-48850435:+] 0.5385 141 6 -15.51 -0.1147 MIMAT0004670 mmu-miR-7a* 235323 Usp28 auaccgucugaCACUAAACAAc || ||||||| gugcaauaaaaGU-AUUUGUUu 2 12 934 954 [mm9:9:48850588-48850608:+] 0.6574 141 7 -5.03 -1.2539 MIMAT0000706 mmu-miR-362-5p 235323 Usp28 uaaGUGUGGA-UCCAAGGUUCCUAa ::::::| ||| ::|||||| augUGUGUUUAAGGGAUUAAGGAUa 2 22 134 158 [mm9:9:48849788-48849812:+] 0.6329 136 6 -15.56 -0.2098 MIMAT0004704 mmu-miR-335-3p 235323 Usp28 ccaguccucGUUAUUACUUUUu ||:|:||||||| ggcucuugcCAGUGAUGAAAAg 2 14 458 479 [mm9:9:48850112-48850133:+] 0.6186 157 7 -16.50 -0.1392 MIMAT0001094 mmu-miR-412 235323 Usp28 gccgaucacCUGGUCCACUu | :||||||| uuuugucaaGUUCAGGUGAc 2 12 391 410 [mm9:9:48850045-48850064:+] 0.6186 143 7 -13.43 -0.8170 MIMAT0002108 mmu-miR-467a-1* 235323 Usp28 cacaUCCACACACAUACAUAUa :| |||| | |||||| uaagGGAUGUGAAUUUGUAUAa 2 19 765 786 [mm9:9:48850419-48850440:+] 0.5385 130 6 -13.66 -0.2291 MIMAT0004786 mmu-miR-540-5p 235323 Usp28 ugUCUCAGUCUCCCACU-GGGAAc |||| : | ||||| ||||| aaAGAGGU-GCUGGUGAGCCCUUc 2 22 476 498 [mm9:9:48850130-48850152:+] 0.5800 127 0 -21.80 -0.2161 MIMAT0004790 mmu-miR-503* 235323 Usp28 gguCCGUCAC--CUU-UGUUAUGag || || | ||| ||||||| cauGGGAGGGAAGAACACAAUACaa 3 20 890 914 [mm9:9:48850544-48850568:+] 0.7178 137 0 -16.10 -0.1347 MIMAT0003373 mmu-miR-302b* 235323 Usp28 ucuuucguAAGGGUACAAUUUCa ||::: | |||||| ucucccuuUUUUUUUUUUAAAGa 2 16 739 761 [mm9:9:48850393-48850415:+] 0.5370 123 6 -6.06 -0.1654 MIMAT0003375 mmu-miR-302c* 235323 Usp28 cguccauugggguacAAUUUCg |||||| cucccuuuuuuuuuuUUAAAGa 2 8 740 761 [mm9:9:48850394-48850415:+] 0.5385 120 6 -7.04 -0.1732 MIMAT0005460 mmu-miR-1224 235323 Usp28 gagguggaggggUCAGGAGUg |||||||| gugacauuuaaaAGUCCUCAg 2 10 406 426 [mm9:9:48850060-48850080:+] 0.6186 145 7 -18.81 -0.9366 MIMAT0003728 mmu-miR-374* 235323 Usp28 gagCCUGUUACUAUUAUGUUGg ||| :| | |||||||| gagGGAAGAACACAAUACAACu 2 20 895 916 [mm9:9:48850549-48850570:+] 0.7178 159 7 -12.51 -1.0996 MIMAT0003731 mmu-miR-671-5p 235323 Usp28 gaggucggGGAGGUCCCGAAGGa | ||| |||||||| aaagaaagCAUCCUGGGCUUCCa 2 16 610 632 [mm9:9:48850264-48850286:+] 0.5557 159 7 -25.48 -0.1603 MIMAT0003734 mmu-miR-667 235323 Usp28 gaacccgacccacCGUCCACAGu ||||||||| auaaucaucagaaGCAGGUGUCu 2 11 681 703 [mm9:9:48850335-48850357:+] 0.5440 150 7 -17.15 -0.3744 MIMAT0003892 mmu-miR-762 235323 Usp28 cgagacAGGGCC--GGGGUCGGGg |||:|| ::||||||| aaagcaUCCUGGGCUUCCAGCCCu 2 17 614 637 [mm9:9:48850268-48850291:+] 0.5557 155 7 -28.61 -0.2663 MIMAT0003735 mmu-miR-672 235323 Usp28 agugugugucauguggUUGGAGu |||||| uuuagauaaaccagaaAACCUCa 2 8 566 588 [mm9:9:48850220-48850242:+] 0.5827 120 6 -14.10 -0.1048 MIMAT0014815 mmu-miR-3099* 235323 Usp28 guucccgACCUUCCUUCGACc | ||| ||||||| guauaugUAGAAAGAAGCUGc 2 15 805 825 [mm9:9:48850459-48850479:+] 0.5385 154 7 -11.95 -1.0166 MIMAT0003451 mmu-miR-677 235323 Usp28 agUCUUCGAUUAGUAGUGACUu | :||||| | ||||||| acAAGAGCUAUU--UCACUGAa 2 21 185 204 [mm9:9:48849839-48849858:+] 0.6329 157 7 -20.53 -1.0900 MIMAT0003452 mmu-miR-678 235323 Usp28 ggaggUCAGGA-ACG-UGG-CUCUg |||||| || ||| |||| uuaaaAGUCCUCAGCUACCAGAGAu 2 18 413 437 [mm9:9:48850067-48850091:+] 0.6186 123 0 -21.24 -0.3727 MIMAT0003457 mmu-miR-680 235323 Usp28 ggGGGUACAGUCGUCUACGGg |: :||| | |||||||| ugCUGGUGUGA-CAGAUGCCa 2 20 639 658 [mm9:9:48850293-48850312:+] 0.5406 157 7 -22.25 -0.3863 MIMAT0003464 mmu-miR-686 235323 Usp28 agaaGUGG-CAGACCCU-UCGUUa |||| |||| || ||||| caggCACCAGUCUUUGACAGCAAa 2 19 323 346 [mm9:9:48849977-48850000:+] 0.6186 129 0 -19.54 -0.5660 MIMAT0003466 mmu-miR-687 235323 Usp28 aguaacgacguaaggUCCUAUc |||||| guguuuaagggauuaAGGAUAa 2 8 138 159 [mm9:9:48849792-48849813:+] 0.6329 120 6 -8.97 -0.1636 MIMAT0004189 mmu-miR-693-3p 235323 Usp28 aaugUCGGU-GUAGACUUUCGACg ||||: || |||||||| augaAGCCGCCAAGGGAAAGCUGc 2 20 519 542 [mm9:9:48850173-48850196:+] 0.5262 158 7 -24.92 -0.1018 MIMAT0004189 mmu-miR-693-3p 235323 Usp28 aaugucgguguagacUUUCGACg :|||||| guguauauguagaaaGAAGCUGc 2 9 803 825 [mm9:9:48850457-48850479:+] 0.5385 124 6 -13.42 -0.1327 MIMAT0003478 mmu-miR-467b* 235323 Usp28 cacaaCCACACACAUACAUAUa | |||| | |||||| uaaggGAUGUGAAUUUGUAUAa 2 18 765 786 [mm9:9:48850419-48850440:+] 0.5385 129 6 -12.14 -0.2291 MIMAT0003479 mmu-miR-669c 235323 Usp28 uguguguagGUG-UGUGUUGAUa ||| |:||||||| agggaagaaCACAAUACAACUAu 2 14 896 918 [mm9:9:48850550-48850572:+] 0.7178 152 7 -15.94 -1.1053 MIMAT0004827 mmu-miR-297b-3p 235323 Usp28 auacccAUACACACAUACAUau | ||||| |||||| caucuaUCUGUGUAUAUGUAga 3 17 794 815 [mm9:9:48850448-48850469:+] 0.5385 144 0 -10.44 -0.1008 MIMAT0003484 mmu-miR-720 235323 Usp28 acCUCCGGGGUCGCUCUa |: |:|: ||||||| ugGGUGUCUGAGCGAGAu 2 17 94 111 [mm9:9:48849748-48849765:+] 0.5859 152 7 -25.18 -0.1153 MIMAT0003485 mmu-miR-455* 235323 Usp28 gcuacaucagguuucCGUGUAu |||||| auuaaggauaaaguuGCACAUu 2 8 149 170 [mm9:9:48849803-48849824:+] 0.6329 120 6 -13.25 -0.1094 MIMAT0003487 mmu-miR-697 235323 Usp28 agagguguccuggUCCUACAa :|||||| uuaaagaaaauaaGGGAUGUg 2 9 755 775 [mm9:9:48850409-48850429:+] 0.5385 124 6 -9.23 -0.1372 MIMAT0003493 mmu-miR-703 235323 Usp28 aagaaaggaagACUUCCAAAa | ||||||| gagccagugcaUUAAGGUUUu 2 11 213 233 [mm9:9:48849867-48849887:+] 0.6162 142 7 -8.52 -0.9034 MIMAT0003493 mmu-miR-703 235323 Usp28 aagaaaggaagacuUCCAAAa |||||| caauacaacuaugcAGGUUUu 2 8 907 927 [mm9:9:48850561-48850581:+] 0.7178 120 6 -9.28 -0.1597 MIMAT0003498 mmu-miR-708* 235323 Usp28 gaUCUUCGAGUGUCAGAUCAAc ||::| || ||||||| ccAGGGGAGCAGUUUCUAGUUa 2 21 369 390 [mm9:9:48850023-48850044:+] 0.6186 152 7 -16.15 -0.9680 MIMAT0003507 mmu-miR-500 235323 Usp28 acuugggaaCGGGUCCAC-GUAa |::|||||| ||| uuuugucaaGUUCAGGUGACAUu 2 14 391 413 [mm9:9:48850045-48850067:+] 0.6186 121 0 -18.04 -0.8828 MIMAT0003508 mmu-miR-501-5p 235323 Usp28 aaagugggUCCCUGUUUCCUAa |||||: |||||| uguguuuaAGGGAUUAAGGAUa 2 15 137 158 [mm9:9:48849791-48849812:+] 0.6329 134 6 -18.31 -0.2098 MIMAT0003711 mmu-miR-652 235323 Usp28 guGUUGGGAU-CACCGCGGUAa | || : | | ||||||| uuCCACAUAAGGCUGCGCCAUg 2 20 500 521 [mm9:9:48850154-48850175:+] 0.5413 142 7 -16.27 -0.3284 MIMAT0004864 mmu-miR-297a* 235323 Usp28 auacccAUACACACAUACAUau | ||||| |||||| caucuaUCUGUGUAUAUGUAga 3 17 794 815 [mm9:9:48850448-48850469:+] 0.5385 144 0 -10.44 -0.1008 MIMAT0004866 mmu-miR-297c* 235323 Usp28 auacccAUACACACAUACAUau | ||||| |||||| caucuaUCUGUGUAUAUGUAga 3 17 794 815 [mm9:9:48850448-48850469:+] 0.5385 144 0 -10.44 -0.1008 MIMAT0004882 mmu-miR-466f-3p 235323 Usp28 cacacaUACACACACACAUAc || | | ||||||| aauaacAUCUAUCUGUGUAUa 2 16 789 809 [mm9:9:48850443-48850463:+] 0.5385 151 7 -5.83 -0.9862 MIMAT0004887 mmu-miR-467d* 235323 Usp28 cacaUCCACACACAUACAUAUa :| |||| | |||||| uaagGGAUGUGAAUUUGUAUAa 2 19 765 786 [mm9:9:48850419-48850440:+] 0.5385 130 6 -13.66 -0.2291 MIMAT0005293 mmu-miR-467e 235323 Usp28 uguaUAUGUACGAGUGUGAAUa | ||| | ||||||| ugccACACAAG-GAACACUUAa 2 19 654 674 [mm9:9:48850308-48850328:+] 0.5406 144 7 -9.00 -0.9949 MIMAT0005294 mmu-miR-467e* 235323 Usp28 uaUAUCCACACACAUACAUAUa | :| |||| | |||||| uaAGGGAUGUGAAUUUGUAUAa 2 21 765 786 [mm9:9:48850419-48850440:+] 0.5385 132 6 -13.66 -0.2291 MIMAT0005831 mmu-miR-669k 235323 Usp28 aacguacgcacauAUACGUau |||||| aacacaauacaacUAUGCAgg 3 9 903 923 [mm9:9:48850557-48850577:+] 0.7178 120 0 -4.38 -0.1508 MIMAT0005833 mmu-miR-669d 235323 Usp28 uguaUAUGUACGUGUGUGUUCa | | |||| |||||||| ugugACAGAUGC-CACACAAGg 2 19 645 665 [mm9:9:48850299-48850319:+] 0.5406 160 7 -18.27 -0.1719 MIMAT0005833 mmu-miR-669d 235323 Usp28 uguauauguacgugUGUGUUca |||||| caugggagggaagaACACAAua 3 9 890 911 [mm9:9:48850544-48850565:+] 0.7178 120 0 -7.94 -0.1197 MIMAT0005835 mmu-miR-1-2-as 235323 Usp28 accuuacauuucuUCAUACAu :|||||| uuguuuuaccuuuGGUAUGU- 2 9 949 968 [mm9:9:48850603-48850622:+] 0.6574 124 6 -5.39 -0.3346 MIMAT0005839 mmu-miR-669f 235323 Usp28 uaugcacACACACAUACAUAUAc | | | |:||||||| aauaacaUCUAUCUGUGUAUAUg 2 17 789 811 [mm9:9:48850443-48850465:+] 0.5385 152 7 -11.07 -0.5615 MIMAT0005839 mmu-miR-669f 235323 Usp28 uaUGCACACACACAUACAUAUac | | |||| | |||||| uaAGGGAUGUGAAUUUGUAUAaa 3 22 765 787 [mm9:9:48850419-48850441:+] 0.5385 137 0 -8.96 -0.2940 MIMAT0005842 mmu-miR-669h-3p 235323 Usp28 acacguacacacauAUACGUau |||||| gaacacaauacaacUAUGCAgg 3 9 902 923 [mm9:9:48850556-48850577:+] 0.7178 120 0 -4.38 -0.1537 MIMAT0005846 mmu-miR-467f 235323 Usp28 acauccACACACACACAUAUa | | | |||||||| auaacaUCUAUCUGUGUAUAu 2 16 790 810 [mm9:9:48850444-48850464:+] 0.5385 151 7 -9.24 -0.9237 MIMAT0005846 mmu-miR-467f 235323 Usp28 acaUCCACACACACACAUAUa :| |||| | |||||| aagGGAUGUGAAUUUGUAUAa 2 19 766 786 [mm9:9:48850420-48850440:+] 0.5385 130 6 -12.98 -0.2291 MIMAT0005848 mmu-miR-466j 235323 Usp28 aaugugUGUAC-GUGUAC-GUGUGu :::|| || ||| ||||| gugcugGUGUGACAGAUGCCACACa 2 18 638 662 [mm9:9:48850292-48850316:+] 0.5406 120 0 -16.80 -0.6597 MIMAT0005855 mmu-miR-467h 235323 Usp28 uguaUAUGUACGUGUGUGAAUa | ||| | | ||||||| ugccACACAAGGA-ACACUUAa 2 19 654 674 [mm9:9:48850308-48850328:+] 0.5406 152 7 -8.97 -0.9716 MIMAT0005860 mmu-miR-1199 235323 Usp28 ggcgcGCUGGCCCUGAGUCu | ::| ||||||| auggaCAGUCAAGACUCAGu 2 16 8 27 [mm9:9:48849662-48849681:+] 0.6641 143 7 -15.77 -0.5354 MIMAT0007868 mmu-miR-1903 235323 Usp28 acagaguccuucuuCUUCUUCc ||||||| agagcuauuucacuGAAGAAGg 2 9 188 209 [mm9:9:48849842-48849863:+] 0.6329 140 7 -14.33 -0.3693 MIMAT0009392 mmu-miR-1929 235323 Usp28 gagaCGAGAUAUUUCAGGAUCUu |:|:|: | ||||||| uaagGUUUUGAAUUAUCCUAGAa 2 20 225 247 [mm9:9:48849879-48849901:+] 0.5996 151 7 -16.00 -1.1747 MIMAT0009398 mmu-miR-1934 235323 Usp28 ucuccuGCUUCGUCC--CCU-GGUCu :|||| ||| ||| |||| uuucacUGAAGAAGGCAGGAGCCAGu 2 18 195 220 [mm9:9:48849849-48849874:+] 0.6329 124 0 -19.56 -0.5016 MIMAT0009399 mmu-miR-1935 235323 Usp28 ucUCUAG-GCGGUCGGAG-ACGGa :|:|| :||| | ||| |||| agGGGUCUUGCCUGGCUCUUGCCa 2 21 445 468 [mm9:9:48850099-48850122:+] 0.6186 127 0 -28.16 -0.2598 MIMAT0009399 mmu-miR-1935 235323 Usp28 ucUCUAGGCGG--UCGGAG-ACGGa :|:|::|:| | |||| |||| uuGGGUUUGUCUAAACCUCGUGCCa 2 21 282 306 [mm9:9:48849936-48849960:+] 0.5848 123 0 -22.08 -0.8656 MIMAT0009405 mmu-miR-1941-5p 235323 Usp28 uuCGGAGACAUGGUCGUAGAGGGa ||||:|||| | ||||||| cuGCCUUUGUA--A--AUCUCCCa 2 23 256 275 [mm9:9:48849910-48849929:+] 0.5672 160 7 -25.38 -1.1817 MIMAT0009405 mmu-miR-1941-5p 235323 Usp28 uucgGAGACAUGGUCGUAGAGGGa :|:|| || : |||||| agaaUUUUGAUCCUUUCUCUCCCu 2 21 722 745 [mm9:9:48850376-48850399:+] 0.5370 124 6 -18.81 -0.1017 MIMAT0009416 mmu-miR-1949 235323 Usp28 uugAUAC-GACUGUAGGACCAUAUc | || :| || | :||||||: guaUUUGUUUUACCU-UUGGUAUGu 2 22 945 968 [mm9:9:48850599-48850622:+] 0.6574 134 0 -10.80 -0.2826 MIMAT0009417 mmu-miR-1950 235323 Usp28 acugguauaggaaucUACGUCu |||||| gaacacaauacaacuAUGCAGg 2 8 902 923 [mm9:9:48850556-48850577:+] 0.7178 120 6 -10.05 -0.1827 MIMAT0009419 mmu-miR-669m 235323 Usp28 uauacaaacacaccuACAUAUa |||||| uaagggaugugaauuUGUAUAa 2 8 765 786 [mm9:9:48850419-48850440:+] 0.5385 120 6 -9.40 -0.2312 MIMAT0009421 mmu-miR-669o 235323 Usp28 ugUAUUUGUACGUGUGUGUUGAu | :|||| || |:|||||| ggAAGAACA--CA-AUACAACUa 2 22 898 917 [mm9:9:48850552-48850571:+] 0.7178 140 6 -15.20 -0.1996 MIMAT0009427 mmu-miR-669n 235323 Usp28 uguguguaggugUGUGUUua |||||| ugggagggaagaACACAAua 3 9 892 911 [mm9:9:48850546-48850565:+] 0.7178 120 0 -5.34 -0.1209 MIMAT0009428 mmu-miR-1956 235323 Usp28 aggcGACUGAGUCGGGACCUGa | ||:|: |||||||| gugaCAGAUUU--CCCUGGACa 2 19 67 86 [mm9:9:48849721-48849740:+] 0.5988 151 7 -20.05 -0.4220 MIMAT0009455 mmu-miR-1983 235323 Usp28 ucuuuuGUACGAGGUCCACUc || | |:||||||| uuuuguCAAG-UUCAGGUGAc 2 16 391 410 [mm9:9:48850045-48850064:+] 0.6186 149 7 -13.74 -0.8242 MIMAT0015645 mmu-miR-3473 235323 Usp28 ccGACUCGG-UAGAGAGGu :||| || ||||||| uuUUGAUCCUUUCUCUCCc 2 17 726 744 [mm9:9:48850380-48850398:+] 0.5370 151 7 -17.27 -0.8927 MIMAT0000125 mmu-miR-23b 235323 Usp28 ccauuagggacCGUUACACUa | :|||||| aaagaaaauaaGGGAUGUGAa 2 11 757 777 [mm9:9:48850411-48850431:+] 0.5385 126 6 -10.83 -0.1527 MIMAT0000125 mmu-miR-23b 235323 Usp28 ccaUUAGGGACCGUUACACua |: :::| |||||| ugcAGGUUUUAUAAAUGUGca 3 19 918 938 [mm9:9:48850572-48850592:+] 0.7178 122 0 -7.62 -0.3115 MIMAT0000142 mmu-miR-9 235323 Usp28 aguAUGUCGAUCUAUUGGU-UUCu | :|| || | ||||| ||| cauUUUAGGUACAGAACCACAAGa 2 21 167 190 [mm9:9:48849821-48849844:+] 0.6329 128 0 -13.57 -0.8927 MIMAT0000148 mmu-miR-136 235323 Usp28 ggUAGUAGUUUUGUUUACCUCa ||: | |::|: ||||||| aaAUUUUAAGGAUUAAUGGAGc 2 21 865 886 [mm9:9:48850519-48850540:+] 0.5385 160 7 -13.19 -0.8242 MIMAT0000149 mmu-miR-137 235323 Usp28 gaugcgcauaagaauuCGUUAUu |||||| cagguuuuauaaauguGCAAUAa 2 8 920 942 [mm9:9:48850574-48850596:+] 0.7178 120 6 -6.27 -0.2392 MIMAT0000159 mmu-miR-149 235323 Usp28 cccucaCUUCUGUGCCUCGGUCu ||||:|| |||||||| acugaaGAAGGCA-GGAGCCAGu 2 18 199 220 [mm9:9:48849853-48849874:+] 0.6329 167 7 -28.26 -0.5024 MIMAT0000159 mmu-miR-149 235323 Usp28 ccCUCACU--UCUGUGCCUCGGUCu || | | ||| || ||||||| guGACUCAUCAGA-ACUGAGCCAGg 2 22 350 373 [mm9:9:48850004-48850027:+] 0.6186 154 7 -18.97 -0.5581 MIMAT0000163 mmu-miR-153 235323 Usp28 cuagugaaaacacUGAUACGUu |||||||| agaacacaauacaACUAUGCAg 2 10 901 922 [mm9:9:48850555-48850576:+] 0.7178 145 7 -14.80 -1.1318 MIMAT0000213 mmu-miR-184 235323 Usp28 uggGAAU-AGUCAAGAGG-CAGGu || | || | ||||| |||| agaCUCAGUCUGGUCUCCGGUCCc 2 20 19 42 [mm9:9:48849673-48849696:+] 0.6117 126 0 -20.32 -0.4263 MIMAT0000214 mmu-miR-185 235323 Usp28 agUC-CUU--GAC--GGAAAGAGAGGu || ||| :|| ||||||||||| uaAGAGAAUUUUGAUCCUUUCUCUCCc 2 21 718 744 [mm9:9:48850372-48850398:+] 0.5370 161 7 -23.31 -0.9027 MIMAT0000219 mmu-miR-24 235323 Usp28 gacaAGGACGACUUGACUCGGu || | | |||||||||| ugacUCAU-CAGAACUGAGCCa 2 19 351 371 [mm9:9:48850005-48850025:+] 0.6186 160 7 -20.91 -0.9028 MIMAT0000233 mmu-miR-200b 235323 Usp28 aguaguaaugguccgUCAUAAu |||||| uaaaugugcaauaaaAGUAUUu 2 8 929 950 [mm9:9:48850583-48850604:+] 0.7178 120 6 -5.88 -0.1499 MIMAT0000513 mmu-miR-19b 235323 Usp28 agucAAAACGUACCUAAACGUGu || | || | |||||| gggaUUAAGGAUAAAGUUGCACa 2 20 146 168 [mm9:9:48849800-48849822:+] 0.6329 123 6 -12.72 -0.3307 MIMAT0000532 mmu-miR-23a 235323 Usp28 ccuuuagggacCGUUACACUa | :|||||| aaagaaaauaaGGGAUGUGAa 2 11 757 777 [mm9:9:48850411-48850431:+] 0.5385 126 6 -10.98 -0.1527 MIMAT0000532 mmu-miR-23a 235323 Usp28 ccuUUAGGGACCGUUACACua |: :::| |||||| ugcAGGUUUUAUAAAUGUGca 3 19 918 938 [mm9:9:48850572-48850592:+] 0.7178 122 0 -7.64 -0.3115 MIMAT0000538 mmu-miR-31 235323 Usp28 gucGAUACGGUCGUAGAACGGa || |||| | ||||||| gguCU-UGCCUGGCUCUUGCCa 2 20 448 468 [mm9:9:48850102-48850122:+] 0.6186 157 7 -21.57 -0.2232 MIMAT0000539 mmu-miR-92a 235323 Usp28 guccggcccUGUUCACGUUAu | | ||||||| agguuuuauAAAUGUGCAAUa 2 13 921 941 [mm9:9:48850575-48850595:+] 0.7178 144 7 -14.04 -1.3153 MIMAT0000555 mmu-miR-324-5p 235323 Usp28 ugugguuacgggAUCCCCUACGc || ||||||: uuuuaaagaaaaUAAGGGAUGUg 2 12 753 775 [mm9:9:48850407-48850429:+] 0.5385 131 0 -14.96 -0.1137 MIMAT0004651 mmu-miR-340-5p 235323 Usp28 uuagucagaguaaCGAAAUAUu |:|||||| uacaacuaugcagGUUUUAUAa 2 10 910 931 [mm9:9:48850564-48850585:+] 0.7178 129 6 -8.25 -0.1400 MIMAT0000651 mmu-miR-19a 235323 Usp28 agucAAAACGUAUCUAAACGUGu || | ||| | |||||| gggaUUAAGGAUAAAGUUGCACa 2 20 146 168 [mm9:9:48849800-48849822:+] 0.6329 131 6 -11.62 -0.3307 MIMAT0000652 mmu-miR-25 235323 Usp28 agUCUGGCUCUGUUCACGUUAc :| :: | | | ||||||| caGGUUUUAUAAAUGUGCAAUa 2 21 920 941 [mm9:9:48850574-48850595:+] 0.7178 148 7 -12.39 -1.3142 MIMAT0000654 mmu-miR-32 235323 Usp28 acguuGAAUCAUUACACGUUAu :||| |||||||||| cagguUUUAUAAAUGUGCAAUa 2 18 920 941 [mm9:9:48850574-48850595:+] 0.7178 165 7 -15.33 -1.3124 MIMAT0000657 mmu-miR-200c 235323 Usp28 agguaguaaugggccgUCAUAAu |||||| auaaaugugcaauaaaAGUAUUu 2 8 928 950 [mm9:9:48850582-48850604:+] 0.7178 120 6 -7.58 -0.1499 MIMAT0000666 mmu-miR-320 235323 Usp28 agcGGGAGAGU-UG-GGUC-GAAAa |||| ||| :| |||| |||| uuaCCCU-UCAGGCACCAGUCUUUg 2 20 315 338 [mm9:9:48849969-48849992:+] 0.6017 123 0 -19.81 -0.4443 MIMAT0000679 mmu-miR-217 235323 Usp28 aggucaGUCAAG--GACUACGUCau || | | || |||||| agaacaCAAUACAACU-AUGCAGgu 3 18 901 924 [mm9:9:48850555-48850578:+] 0.7178 122 0 -8.94 -0.1732 MIMAT0000708 mmu-miR-363 235323 Usp28 auGUCU-ACCUA-UGGCACGUUAa |||: | || | :||||||| ugCAGGUUUUAUAAAUGUGCAAUa 2 21 918 941 [mm9:9:48850572-48850595:+] 0.7178 150 7 -16.45 -1.3130 MIMAT0000766 mmu-miR-335-5p 235323 Usp28 uguaaaaagcaauAACGAGAACu | ||||||| uaggggucuugccUGGCUCUUGc 2 11 444 466 [mm9:9:48850098-48850120:+] 0.6186 142 7 -13.61 -0.1386 MIMAT0000904 mmu-miR-215 235323 Usp28 caGACAGUUUAGUAUCCA-GUa :|| || ||: ||||| || agUUG-CACAUUUUAGGUACAg 2 20 160 180 [mm9:9:48849814-48849834:+] 0.6329 121 0 -9.78 -0.9847 MIMAT0001418 mmu-miR-431 235323 Usp28 acguACUGCCGGAC-GUUCUGu | |:|| | | |||||| ccgcUCAUGGACAGUCAAGACu 2 18 2 23 [mm9:9:48849656-48849677:+] 0.6641 121 6 -13.68 -0.4033 MIMAT0001533 mmu-miR-448 235323 Usp28 uaccCUGUAGGAUGUAUACGUu |:: |: || ||:|||| ugcaGGUUUUAUAAAUGUGCAa 2 19 918 939 [mm9:9:48850572-48850593:+] 0.7178 138 0 -11.35 -0.1423 MIMAT0001533 mmu-miR-448 235323 Usp28 uacccuguaggauguAUACGUu |||||| agaacacaauacaacUAUGCAg 2 8 901 922 [mm9:9:48850555-48850576:+] 0.7178 120 6 -11.79 -0.1938 MIMAT0001537 mmu-miR-429 235323 Usp28 ugccguaauggucugUCAUAAu |||||| uaaaugugcaauaaaAGUAUUu 2 8 929 950 [mm9:9:48850583-48850604:+] 0.7178 120 6 -9.02 -0.1499 MIMAT0003181 mmu-miR-367 235323 Usp28 agugguAACGAUUU-CACGUUAa || |||| ||||||| gcagguUUUAUAAAUGUGCAAUa 2 17 919 941 [mm9:9:48850573-48850595:+] 0.7178 155 7 -10.32 -1.3130 MIMAT0003729 mmu-miR-216b 235323 Usp28 aguGUAAACGGACGUCUCUAAa | | ||: |||||||| aguCCUCAGCUACCAGAGAUUg 2 20 418 439 [mm9:9:48850072-48850093:+] 0.6186 151 7 -12.32 -0.1090 MIMAT0003456 mmu-miR-495 235323 Usp28 uucUUCACGUGGU----ACAAACAAa | ||||| :| | |||||| uaaAUGUGCAAUAAAAGUAUUUGUUu 2 20 929 954 [mm9:9:48850583-48850608:+] 0.6574 122 6 -10.13 -0.2338 MIMAT0003780 mmu-miR-490 235323 Usp28 gucguaccucaggagGUCCAAc |||||| cacaauacaacuaugCAGGUUu 2 8 905 926 [mm9:9:48850559-48850580:+] 0.7178 120 6 -8.56 -0.3223 MIMAT0004847 mmu-miR-882 235323 Usp28 ugauuacgcgauuGAGAGAGGa :||||||| gaauuuugauccuUUCUCUCCc 2 10 723 744 [mm9:9:48850377-48850398:+] 0.5370 141 7 -15.24 -0.8960 MIMAT0004899 mmu-miR-92b 235323 Usp28 ccuccggcccugcuCACGUUAu ||||||| cagguuuuauaaauGUGCAAUa 2 9 920 941 [mm9:9:48850574-48850595:+] 0.7178 140 7 -13.78 -1.3153 MIMAT0005850 mmu-miR-1192 235323 Usp28 uuaaaccagacaaacAAACAAa |||||| ugugcaauaaaaguaUUUGUUu 2 8 933 954 [mm9:9:48850587-48850608:+] 0.6574 120 6 -4.90 -0.2381

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G040794 Usp28 Mus musculus 235323 19536157 0 0 R54791; MOUSE$USP28_01; Binding factors: mmu-miR-124-3p // 0 0 R54808; MOUSE$USP28_02; Binding factors: mmu-miR-128-3p , mmu-miR-27a-3p , mmu-miR-27b-3p , mmu-miR-673-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Usp28 mghv-miR-M1-9 beg:918 end:937 pic:3' TTTTTCCAGGTCCGTTTACACT 5'& ||||.. .||||||| &5' ----AGGTTTTA-TAAATGTG- 3' Usp28 mmu-miR-188-5p beg:135 end:151 pic:3' GGGAGGTGGTACG--TTCCCTAC 5'& .||. ||||||| &5' ---------GTGTTTAAGGGAT- 3' Usp28 mmu-miR-188-5p beg:762 end:774 pic:3' GGGAGGTGGTACGTTCCCTAC 5'& .|||||||| &5' ------------TAAGGGATG 3' Usp28 mmu-miR-669c beg:902 end:918 pic:3' TGTGTGTAGGTG-TGTGTTGATA 5'& ||| |.|||||||| &5' ---------CACAATACAACTAT 3' Usp28 mmu-miR-669d beg:648 end:665 pic:3' TGTATATGTACGTGTGTGTTCA 5'& | |||| |||||||| &5' ------AGATGC-CACACAAG- 3' Usp28 mmu-miR-720 beg:92 end:112 pic:3' ACCTCCGGGGTCGCTCTA 5'& |||. |.|. |||||||| &5' TGGGTGTCTGAGCGAGAT 3' Usp28 mmu-miR-667 beg:691 end:703 pic:3' GAACCCGACCCACCGTCCACAGT 5'& ||||||||| &5' -------------GCAGGTGTC- 3' Usp28 mmu-miR-1941-5p beg:256 end:275 pic:3' TTCGGAGACATGGTCGTAGAGGGA 5'& ||||.|||| ||||||| &5' --GCCTTTGTAA----ATCTCCC- 3' Usp28 mmu-miR-335-3p beg:462 end:479 pic:3' CCAGTCCTC-GTTATTACTTTTT 5'& | ||.|.|||||||. &5' --------GCCAGTGATGAAAAG 3' Usp28 mmu-miR-412 beg:396 end:410 pic:3' GCCGATCACCTGGTCCACTT 5'& ||| .||||||| &5' -----AGT---TCAGGTGA- 3' Usp28 mmu-miR-1983 beg:397 end:410 pic:3' TCTTTTGTACGAGGTCCACTC 5'& |.| ||||||| &5' ---------GTT-CAGGTGA- 3' Usp28 mmu-miR-1956 beg:70 end:86 pic:3' AGGCGACTGAGTCGGGACCTGA 5'& ||.|. |||||||| &5' ------GATTT--CCCTGGAC- 3' Usp28 mmu-miR-24 beg:358 end:372 pic:3' GACAAGGACGACTTGACTCGGT 5'& ||||||||||| &5' -----------GAACTGAGCCA 3' Usp28 mmu-miR-3099star beg:811 end:825 pic:3' GTTCCCGACCTTCCTTCGACC 5'& ||| ||||||| &5' ---------GAAAGAAGCTG- 3' Usp28 mmu-miR-1199 beg:8 end:27 pic:3' GGCGCGCTGGCC---CTGAGTCT 5'& ||| ||||||| &5' ------GACAGTCAAGACTCAG- 3' Usp28 mmu-miR-149 beg:202 end:220 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& ||||.|| |||||||| &5' ------GAAGGCA-GGAGCCAG- 3' Usp28 mmu-miR-149 beg:357 end:374 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& ||| || |||||||. &5' --------AGA-ACTGAGCCAGG 3' Usp28 mmu-miR-335-5p beg:456 end:466 pic:3' TGTAAAAAGCAATAACGAGAACT 5'& ||||||| &5' ---------------GCTCTTG- 3' Usp28 mmu-miR-671-5p beg:613 end:632 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& ||| ||| |||||||| &5' ----AGCA--TCCTGGGCTTCC- 3' Usp28 mmu-miR-1224 beg:407 end:426 pic:3' GAGGTGGAGGGGTCAGGAGTG 5'& ||..| |||||||| &5' ---CATTTAAA-AGTCCTCA- 3' Usp28 mmu-miR-367 beg:926 end:941 pic:3' AGTGGTAACGATTT-CACGTTAA 5'& |||| ||||||| &5' ----------TAAATGTGCAAT- 3' Usp28 mmu-miR-32 beg:928 end:942 pic:3' ACGTTGAATCATTACACGTTAT 5'& ||||||||||| &5' -----------AATGTGCAATA 3' Usp28 mmu-miR-363 beg:930 end:941 pic:3' ATGTCTACCTATGGCACGTTAA 5'& .||||||| &5' -------------TGTGCAAT- 3' Usp28 mcmv-miR-m108-2-5p.2 beg:592 end:606 pic:3' CACTGGCGAGCGCTGCTCACT 5'& |. .|||||| &5' ----------GTCTTGAGTGA 3' Usp28 mcmv-miR-m21-1 beg:27 end:45 pic:3' GCCGAACTTGCACAGGGGATA 5'& ||. || |||||||. &5' -GGTCTC--CG-GTCCCCTG- 3' Usp28 mghv-miR-M1-2 beg:431 end:453 pic:3' TTTCTCCCCCTCTCCCCCAGAC 5'& |.||| || || ||||||| &5' AGAGATTGGTAGTAGGGGTCT- 3' Usp28 mghv-miR-M1-6 beg:363 end:385 pic:3' TTTTGGTGGAGTGTGTCAAAGT 5'& .|.||| .||||||| &5' -GAGCCAGGGGA-GCAGTTTC- 3' Usp28 mmu-let-7d beg:245 end:264 pic:3' TTGATACGTTGGA--TGATGGAGA 5'& .|||| |||.|||.| &5' --------GACCTGAACTGCCTTT 3' Usp28 mmu-let-7d beg:910 end:930 pic:3' TTGATACGTTGGATGATGGAGA 5'& |||||||||. .| .||. &5' AACTATGCAGGTT-TTAT---- 3' Usp28 mmu-let-7fstar beg:765 end:786 pic:3' CCCTTCCGTTATCTAACATATC 5'& |||| | | ||||||| &5' GGGAT-GTGAAT--TTGTATA- 3' Usp28 mmu-let-7g beg:252 end:263 pic:3' TTGACATGTTTGATGATGGAGT 5'& |||.|||. &5' -------------ACTGCCTT- 3' Usp28 mmu-miR-106b beg:551 end:570 pic:3' TAGACGTGACAGTCGTGAAAT 5'& |. ||||. .|||||| &5' ----GT-CTGTTTATACTTTA 3' Usp28 mmu-miR-1188 beg:573 end:593 pic:3' AGGACCGGG---TTGGAGTGTGGT 5'& || |||||||||.. &5' ------CCAGAAAACCTCACATT- 3' Usp28 mmu-miR-125a-3p beg:821 end:847 pic:3' CCGAGGG--TTCTTGGAGTG-GACA 5'& |||.. ||||||.|| .|| &5' -GCTTTTTAAAGAACTTCTAATTG- 3' Usp28 mmu-miR-135astar beg:23 end:43 pic:3' GCGGTGCC-GAGGTTAGGGATAT 5'& |.| .|| ||||..|||| &5' -GTC-TGGTCTCCGGTCCC---- 3' Usp28 mmu-miR-150star beg:619 end:645 pic:3' GATA-GGGGGTCCGGACATGGTC 5'& ||. |..|||| |||||.| | &5' CTGGGCTTCCAGCCCTGTGCTGG 3' Usp28 mmu-miR-151-3p beg:13 end:32 pic:3' GGAGTTCCTCGGAGTCAGATC 5'& ||||| ||||||||.| &5' --TCAAGA---CTCAGTCTGG 3' Usp28 mmu-miR-185 beg:720 end:744 pic:3' AGTCCTTGAC----GGAAAGAGAGGT 5'& |||.| ||||||||||| &5' ----GAATTTTGATCCTTTCTCTCC- 3' Usp28 mmu-miR-188-5p beg:75 end:93 pic:3' GGGAGGTGGTACGTTCCCTAC 5'& |||| || .|||||| &5' CCCTGGACA----GAGGGAT- 3' Usp28 mmu-miR-1906 beg:38 end:69 pic:3' TCGGGACGGA---------GTCCGACGACGT 5'& |||||||| ||| |||.||. &5' --CCCTGCCTGTTATGTGGCAGTCTGTTGT- 3' Usp28 mmu-miR-1928 beg:42 end:59 pic:3' CTCGACCGTTACATCGA 5'& || |. ||||.|| &5' --GCCTGTTATGTGGC- 3' Usp28 mmu-miR-1929 beg:226 end:248 pic:3' GAGACGAGATATTTCAGGATCTT 5'& |.|.|. |||||||| &5' ----GTTTTGAATTATCCTAGAA 3' Usp28 mmu-miR-1931 beg:247 end:267 pic:3' CGGTAGCGTGGTCGGGAACGTA 5'& || ||. |||.|||.| &5' -CCTGA--ACT-GCCTTTGTA- 3' Usp28 mmu-miR-193star beg:6 end:26 pic:3' AGTAGAACGGG-CGTTTCTGGGT 5'& || | |. |||||.|| &5' ------TGGACAGTCAAGACTCA 3' Usp28 mmu-miR-1940 beg:482 end:505 pic:3' TTGACGAGGT-GGAAGAGTCAGGAGGTA 5'& .||| | . ||||| |.|||| &5' -GCTGGTGAGCCCTTC-----CTTCCA- 3' Usp28 mmu-miR-1944 beg:161 end:182 pic:3' TTAGTCTTGAAC-TGTAAG--TCGTGTCTC 5'& ||| |||||. .|.||||| &5' ---------TTGCACATTTTAGGTACAGA- 3' Usp28 mmu-miR-1950 beg:795 end:816 pic:3' ACTGGTATAGGA--ATCTACGTCT 5'& ||||. || |||.||| &5' ------TATCTGTGTATATGTAGA 3' Usp28 mmu-miR-1953 beg:719 end:741 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& |||| ..||| |||||.| &5' -AGAATTTTGATC-CTTTCTC- 3' Usp28 mmu-miR-1957 beg:295 end:309 pic:3' CAGTATACGAG-ATGGTGAC 5'& ||| |.||||| &5' --------CTCGTGCCACT- 3' Usp28 mmu-miR-1959 beg:525 end:549 pic:3' GAGGTGAC---TCGATGTAGGGG 5'& ||| | ||||.||||||| &5' --CCAAGGGAAAGCTGCATCCCC 3' Usp28 mmu-miR-1961 beg:248 end:263 pic:3' AAGATTGATGATGGAGT 5'& ||.| |||.|||. &5' --CTGA--ACTGCCTT- 3' Usp28 mmu-miR-196a beg:245 end:262 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& .|| || ||||.||| &5' ------GACCTG-AACTGCCT- 3' Usp28 mmu-miR-1971 beg:619 end:642 pic:3' AGAGTCG--GGTCGGAA-ATG 5'& || .|| |||||| |.| &5' -CTGGGCTTCCAGCCCTGTGC 3' Usp28 mmu-miR-1981 beg:243 end:265 pic:3' CGGTGCAGATTC-GGGT----CGGAAATG 5'& ||| ||. ||||||. &5' ---------AAGACCTGAACTGCCTTTG- 3' Usp28 mmu-miR-1981 beg:316 end:339 pic:3' CGGTGCAGATTCG-GGTCGGAAATG 5'& || | || |.|| ||||.||||. &5' -CC-CTTC-AGGCACCAGTCTTTG- 3' Usp28 mmu-miR-1982.2 beg:335 end:354 pic:3' GACACCCTCTTGTA-TCCCACT 5'& || |.|| ||||||| &5' ------GACAGCAAAAGGGTGA 3' Usp28 mmu-miR-19a beg:151 end:169 pic:3' AGTCAAAACGTATCTAAACGTGT 5'& | ||| ||||||| &5' --------GGATAAAGTTGCACA 3' Usp28 mmu-miR-19b beg:151 end:169 pic:3' AGTCAAAACGTACCTA----AACGTGT 5'& |||| ||||||| &5' ------------GGATAAAGTTGCACA 3' Usp28 mmu-miR-211 beg:879 end:902 pic:3' TC-CGTTTCCTACTGTTTCCCTT 5'& .| |||| |||. .|||||| &5' GGAGCAATC-ATGG--GAGGGAA 3' Usp28 mmu-miR-211 beg:518 end:537 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& .||| .| ||||||| &5' ----GAAGCC--GCCAAGGGAA 3' Usp28 mmu-miR-2140 beg:524 end:546 pic:3' TGGTGGTTCTA----GACGTGGA 5'& ||.|||||. |||||.| &5' -CCGCCAAGGGAAAGCTGCATC- 3' Usp28 mmu-miR-214 beg:40 end:69 pic:3' TGACGGACAG-ACA----CGGACGACA 5'& ||||||||. ||| |.|||.||| &5' -CTGCCTGTTATGTGGCAGTCTGTTGT 3' Usp28 mmu-miR-219 beg:1 end:19 pic:3' TCTTAACGCAAACCTGTTAGT 5'& || ||||||.||| &5' ------GCTCATGGACAGTCA 3' Usp28 mmu-miR-222 beg:39 end:59 pic:3' TGGGTCATCGGTC--TACATCGA 5'& ||| ||| ||||.|| &5' -CCCT---GCCTGTTATGTGGC- 3' Usp28 mmu-miR-22star beg:886 end:906 pic:3' ATTTCGAACGGTGA-----CTTCTTGA 5'& .||. ||||||| &5' ---------TCATGGGAGGGAAGAAC- 3' Usp28 mmu-miR-23a beg:765 end:777 pic:3' CCTTTAGGGACCGTTACACTA 5'& || .|||||| &5' ----------GG-GATGTGA- 3' Usp28 mmu-miR-27astar beg:481 end:497 pic:3' ACGAGTGTTCGTCGATTCGGGA 5'& || | |.|||||| &5' ---------GCTGGTGAGCCCT 3' Usp28 mmu-miR-291b-5p beg:538 end:557 pic:3' CCTCTCCCGGAGGT-GAAACTAG 5'& || ||| |||||.|| &5' -------GCATCCCCCTTTGGTC 3' Usp28 mmu-miR-299 beg:487 end:509 pic:3' TTCGCCAAATGGCAGGGTGTAT 5'& .||| || |.||||||| &5' GAGCCCTT--CC-TTCCACATA 3' Usp28 mmu-miR-29astar beg:404 end:427 pic:3' GACTTGT-GGTTTTCTTTAGTCA 5'& || ||| ..||||| |||| &5' -TG-ACATTTAAAAGTCCTCAG- 3' Usp28 mmu-miR-29bstar beg:560 end:580 pic:3' ATTTGGTGGTATAC-TTTGGTCG 5'& .||. || ||||||| &5' -----TACTTTAGATAAACCAG- 3' Usp28 mmu-miR-30astar beg:818 end:850 pic:3' CGACG--------TTTGTAGGCTGACTTTC 5'& ||||| .||| || |.||.|| &5' GCTGCTTTTTAAAGAACTTCTAATTGGAA- 3' Usp28 mmu-miR-30c-2star beg:484 end:505 pic:3' TCTCATTTGTCGGAA-GAGGGTC 5'& .||.|.| |||| ||.||| &5' --GGTGAGC--CCTTCCTTCCA- 3' Usp28 mmu-miR-30c-2star beg:244 end:276 pic:3' TCTC-ATTTGTCGGA-------AGAGGGTC 5'& ||| |.||| |||| ||||||| &5' AGACCTGAACTGCCTTTGTAAATCTCCCA- 3' Usp28 mmu-miR-30d beg:544 end:565 pic:3' GAAGGTCAGCCCCTACAAATGT 5'& || |.|| ||||||.| &5' ---CCCTTTGGTC-TGTTTATA 3' Usp28 mmu-miR-31 beg:445 end:468 pic:3' GTCGATACGG-TCGTAGAACGGA 5'& .|. |||| .|| ||||||| &5' -GGTCTTGCCTGGC-TCTTGCC- 3' Usp28 mmu-miR-33 beg:206 end:225 pic:3' ACGTTA-CGTTGATGTTACGTG 5'& |||. || ||.||||. &5' -GCAGGAGC-----CAGTGCAT 3' Usp28 mmu-miR-331-3p beg:366 end:376 pic:3' AAGATCCTATCCGGGTCCCCG 5'& ||||||| &5' -------------CCAGGGG- 3' Usp28 mmu-miR-338-3p beg:468 end:489 pic:3' GTTGTTTTAGTGACTACGACCT 5'& .| ||| |.|||||| &5' -GATGAAAAGA--GGTGCTGG- 3' Usp28 mmu-miR-342-5p beg:528 end:548 pic:3' GAGTTAGTG-TCTATCGTGGGGA 5'& ||| || |||.||| &5' --CAAGGGAAAGCT-GCATCCC- 3' Usp28 mmu-miR-3473 beg:725 end:744 pic:3' CCGACTCGGT-AGAGAGGT 5'& .||| || ||||||| &5' --TTGATCCTTTCTCTCC- 3' Usp28 mmu-miR-362-5p beg:142 end:158 pic:3' TAAGTGTGGATCCAAGGTTCCTAA 5'& ||| ..|||||| &5' ----------AGGGATTAAGGAT- 3' Usp28 mmu-miR-381 beg:764 end:786 pic:3' TGTCTCTCGAACGGGAACATAT 5'& ||.|| || .||||||| &5' --AGGGATG-TGAATTTGTATA 3' Usp28 mmu-miR-433 beg:879 end:895 pic:3' TGTGGCTCCTCGGGTAGTACTA 5'& ||||| ||||||. &5' -------GGAGCA-ATCATGG- 3' Usp28 mmu-miR-452 beg:248 end:270 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& || | |||.||.|||. &5' --CTGAACTGCCTTTGTAAAT- 3' Usp28 mmu-miR-465a-5p beg:298 end:316 pic:3' AGTGTAGTCACGGT-AAGATTTAT 5'& |||||| ||.||||| &5' --------GTGCCACTTTTAAAT- 3' Usp28 mmu-miR-465c-5p beg:298 end:316 pic:3' GTCTAGTCGCGGT-AAGATTTAT 5'& |.|||| ||.||||| &5' -------GTGCCACTTTTAAAT- 3' Usp28 mmu-miR-466l beg:931 end:953 pic:3' TTATACACACGTA-----CATAAATAT 5'& |||||| ||||||.| &5' ------TGTGCAATAAAAGTATTTGT- 3' Usp28 mmu-miR-470 beg:682 end:708 pic:3' TGAGTGGTCA-CGGT--CAGGTTCTT 5'& |||.||| || |||.|||. &5' --TCATCAGAAGCAGGTGTCTAAGG- 3' Usp28 mmu-miR-470star beg:475 end:490 pic:3' AGAAGAGTCTTTCCATGACCAA 5'& |.||||.||||| &5' ---------AGAGGTGCTGGT- 3' Usp28 mmu-miR-470star beg:625 end:646 pic:3' AGAAGAGTCTTTCCATGACCAA 5'& |||| ||| ||.||||| &5' -CTTC-CAGCCCTGTGCTGGT- 3' Usp28 mmu-miR-485 beg:318 end:338 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& |||| .| ||||.||.| &5' ---TTCAG-GCA-CCAGTCTTT 3' Usp28 mmu-miR-488 beg:813 end:833 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& |||||.| ||.|||.|| &5' ----AAGAAGCTGCTTTTTAA 3' Usp28 mmu-miR-499 beg:580 end:602 pic:3' TTTGTAGTGACGTTCAGAATT 5'& |||| |||| ||||||.| &5' AAACCTCACATTCAGTCTTGA 3' Usp28 mmu-miR-652 beg:500 end:521 pic:3' GTGTTGGGATCACCGCGGTAA 5'& |||| .| ||||||| &5' CACATAA--GGCTGCGCCAT- 3' Usp28 mmu-miR-666-5p beg:31 end:52 pic:3' CCGAGAGTGTCGAC--ACGGGCGA 5'& |||| |.|. ||||.|.| &5' ---TCTC-CGGTCCCCTGCCTGTT 3' Usp28 mmu-miR-669i beg:795 end:813 pic:3' CATACGTACACACATATACGT 5'& .|| ||||||||||.| &5' -----TATCTGTGTATATGTA 3' Usp28 mmu-miR-669j beg:795 end:813 pic:3' ACAAACGTACACTCATATACGT 5'& .|| || |||||||.| &5' ------TATCTGTGTATATGTA 3' Usp28 mmu-miR-673-3p beg:64 end:85 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& ||| |||| |.|. |||.||| &5' -GTG-ACAG-ATTT--CCCTGGA 3' Usp28 mmu-miR-675-5p beg:529 end:546 pic:3' TGACACCCGGGAAAGGCGTGGT 5'& ||| |.|||.| &5' -----GGGAAAG--CTGCATC- 3' Usp28 mmu-miR-677 beg:183 end:205 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& || ||||| |||||||| &5' -CAAGAGCTATT--TCACTGAA 3' Usp28 mmu-miR-680 beg:638 end:658 pic:3' GGGGGTACAGTCGTCTACGGG 5'& |. .||| | |||||||| &5' --CTGGTGTGA-CAGATGCC- 3' Usp28 mmu-miR-684 beg:517 end:541 pic:3' AACTGAAC---TTCCCTTTTGA 5'& ||| ||||||||.|| &5' -TGAAGCCGCCAAGGGAAAGCT 3' Usp28 mmu-miR-686 beg:682 end:698 pic:3' AGAAGTGGCAGACCCTTCGTTA 5'& |||.| ||||||. &5' ---TCATCA-----GAAGCAG- 3' Usp28 mmu-miR-693-3p beg:520 end:543 pic:3' AATGTCGGTGTAGA-CTTTCGACG 5'& ||||.| ||||||||| &5' ----AGCCGCCAAGGGAAAGCTGC 3' Usp28 mmu-miR-696 beg:653 end:671 pic:3' GGGTGTCGTTCG-TGTGCG 5'& ||||| |||| |||| &5' -CCACA-CAAGGAACAC-- 3' Usp28 mmu-miR-708star beg:370 end:390 pic:3' GATCTTCGAGTGTC--AGATCAAC 5'& ||..| .||| ||||||| &5' --AGGGGA--GCAGTTTCTAGTT- 3' Usp28 mmu-miR-712 beg:879 end:901 pic:3' CCATGGCGGGCCCACTTCCTC 5'& || .| .| || ||.||| &5' GGAGCAATCATGG-GAGGGA- 3' Usp28 mmu-miR-717 beg:83 end:106 pic:3' TCTCTTCCATAGAG-ACAGACTC 5'& |||.|| ||. |||||||| &5' --AGAGGG-ATTGGGTGTCTGAG 3' Usp28 mmu-miR-743b-5p beg:87 end:107 pic:3' ACTACCTGTGGT-CAGACTTGT 5'& |||. ||||||.| &5' ----GGATTGGGTGTCTGAGC- 3' Usp28 mmu-miR-762 beg:617 end:638 pic:3' CGAGACAGGG-CCG-GGGTCGGGG 5'& |||. ||| .|||||||. &5' ------TCCTGGGCTTCCAGCCCT 3' Usp28 mmu-miR-873 beg:345 end:367 pic:3' TCCTCTGAGTGTTCAAGGACG 5'& .|| ||||||. || ||| &5' GGGTGACTCATCAGAA-CTG- 3' Usp28 mmu-miR-9 beg:421 end:437 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& ||||| ||||.||| &5' -----CAGCT-----ACCAGAGA 3' Usp28 mmu-miR-92a beg:919 end:942 pic:3' GTCCGGCCCTGTT-CACGTTAT 5'& ||||.. |||||||| &5' CAGGTTTTATAAATGTGCAATA 3' Usp28 mmu-miR-92b beg:919 end:942 pic:3' CCTCCGGCCCTGCT-CACGTTAT 5'& |||.. |||||||| &5' --AGGTTTTATAAATGTGCAATA 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Usp28; Kiaa1515 mmu-let-7a 241 264 UGAUAUGUUGGA--UGAUGGAGU ||| :|||| |||:|||: CCUAGAAGACCUGAACUGCCUUU Usp28; Kiaa1515 mmu-let-7b 241 264 UUGGUGUGUUGGA--UGAUGGAGU |:| | :|||| |||:|||: -CCUAGAAGACCUGAACUGCCUUU Usp28; Kiaa1515 mmu-let-7c 241 264 UUGGUAUGUUGGA--UGAUGGAGU |:| :|||| |||:|||: -CCUAGAAGACCUGAACUGCCUUU Usp28; Kiaa1515 mmu-let-7d 241 265 UGAUACGUUGGA--UGAUGGAGA- ||| :|||| |||:|||:| CCUAGAAGACCUGAACUGCCUUUG Usp28; Kiaa1515 mmu-let-7e 241 264 UGAUAUGUUGGAG--GAUGGAGU ||| :|||| ||:|||: CCUAGAAGACCUGAACUGCCUUU Usp28; Kiaa1515 mmu-let-7i 176 201 -UGUC---GUGUUUGAUGAUGGAGU- |||| |||||: :|||::||| UACAGAACCACAAGA-GCUAUUUCAC Usp28; Kiaa1515 mmu-miR-103 631 658 AGUAUCGGGACAUGU---UACG----ACGA ||||||||:| :|| ||| ---CAGCCCUGUGCUGGUGUGACAGAUGCC Usp28; Kiaa1515 mmu-miR-124a 284 307 -CCGUA-AG---UGGCGCACGGAAU ||: || ||| |||||| GGGUUUGUCUAAACCUCGUGCCA-- Usp28; Kiaa1515 mmu-miR-127 14 40 -CGGUUC-GAGUCU-GCCU-AGGCU- |:|||| ||||| :|| ||||: AGUCAAGACUCAGUCUGGUCUCCGGU Usp28; Kiaa1515 mmu-miR-133a 338 382 -UGUCGA----CCA-------------ACU---UCCCCUGGUU ||||| ||| ||| |||||| ||: GACAGCAAAAGGGUGACUCAUCAGAACUGAGCCAGGGGAGCAGU Usp28; Kiaa1515 mmu-miR-133b 340 382 AUCGA----CCA-------------ACU---UCCCCUGGUU ||| ||| ||| |||||| ||: CAGCAAAAGGGUGACUCAUCAGAACUGAGCCAGGGGAGCAGU Usp28; Kiaa1515 mmu-miR-135a 502 529 AGUGUA-UCCUUAUU----UUUCGGUAU ||||| ||| :|||||: CCACAUAAGGCUGCGCCAUGAAGCCGC- Usp28; Kiaa1515 mmu-miR-138 320 335 CUAAGUGUUGUGGUCGA |||| ::||||||: -CUUCA-GGCACCAGUC Usp28; Kiaa1515 mmu-miR-140* 619 648 -AGGCACCA--AGA-UGGGACA---CCAU- ||| ||| || :|||||| |||: AUCC-UGGGCUUCCAGCCCUGUGCUGGUGU Usp28; Kiaa1515 mmu-miR-149 204 221 CCUCACUUCUGUGCCUCGGUCU ||||:|| |||||||| ----AGAAGGCA-GGAGCCAGU Usp28; Kiaa1515 mmu-miR-150 79 106 GUGACCAUGU-UCCC-AACCCU----CU- |||| ||| |||| ||||| || -CCUGG-ACAGAGGGAUUGGGUGUCUGAG Usp28; Kiaa1515 mmu-miR-151 4 33 GGAGUUCCUCG-------GAGUCAGAUC- |||| ||| ||||||||:| GCUCAUGGACAGUCAAGACUCAGUCUGGU Usp28; Kiaa1515 mmu-miR-15a 625 648 GUGUUUGGUAAU-ACACGACGAU- :| ||| ||||||| |: GGCUU-CCAGCCCUGUGCUGGUGU Usp28; Kiaa1515 mmu-miR-16 464 492 GCGGUUAUAAA-----UGCACGACGAU- ||||:|: | |||||| |: UGCCAGUGAUGAAAAGAGGUGCUGGUGA Usp28; Kiaa1515 mmu-miR-181a 584 606 UGAGUGGCUGUCGCAACUUACAA ||||| |||: ||||:|| CCUCACAUUCAGUCUUGAGUGA- Usp28; Kiaa1515 mmu-miR-181c 584 606 UGAGUGGCUGUCC-AACUUACAA ||||| ||| ||||:|| CCUCACAUUCAGUCUUGAGUGA- Usp28; Kiaa1515 mmu-miR-183 282 308 GUCACUUA---AGA--UGGU-CACGGUAU || | ||| ||| |||||| --UUGGGUUUGUCUAAACCUCGUGCCAC- Usp28; Kiaa1515 mmu-miR-184 3 43 -UGGGAAU------------AGUCA----AGAGG-CAGGU :|:| |: ||||| ||||| |||| CGCUCAUGGACAGUCAAGACUCAGUCUGGUCUCCGGUCCC Usp28; Kiaa1515 mmu-miR-185 252 275 -CUUGACGGAAAG----AGAGGU ||||||||||| ||||| UGAACUGCCUUUGUAAAUCUCCC Usp28; Kiaa1515 mmu-miR-187 640 672 -GGCCG--------ACGUUGUGUUC--UGUGCU |:||: ||| ||||||| |||| GCUGGUGUGACAGAUGCCACACAAGGAACACU- Usp28; Kiaa1515 mmu-miR-188 115 152 -UGGGAGGUGG------------UACG--UUCCCUAC ||||||| || :||: ||||||| GACCCUCCCCCCUCUCGUGAUGUGUGUUUAAGGGAUU Usp28; Kiaa1515 mmu-miR-193 445 472 GACCCU-GAAAC-AUC-----CGGUCAA |||: ||| |:| |||||| -AGGGGUCUUGCCUGGCUCUUGCCAGUG Usp28; Kiaa1515 mmu-miR-196b 687 714 -GGUUGUUGUCC------UUUGAUGGAU :||: |:|||| |::||||| AUCAGAAGCAGGUGUCUAAGGCUACCC- Usp28; Kiaa1515 mmu-miR-199a* 44 71 UUGGU---UACA-CGUCUGAUGACAU- :|| |||| |||| ||::|||: UGCCUGUUAUGUGGCAGUCUGUUGUGA Usp28; Kiaa1515 mmu-miR-204 322 352 -GUCCGUA-UCCU--ACUGU----UUCCCUU |||||| || ||||| ||||| UCAGGCACCAGUCUUUGACAGCAAAAGGGU- Usp28; Kiaa1515 mmu-miR-207 346 380 CUCCCUCCU------------CUCGGUCCUCUUCG- |||| || |||||||| |:||| AAGGGU-GACUCAUCAGAACUGAGCCAGG-GGAGCA Usp28; Kiaa1515 mmu-miR-211 341 378 UCCG-UUUCCUACUG-----------UU---UCCCUU- || |||||:|||| :| ||||:| -AGCAAAAGGGUGACUCAUCAGAACUGAGCCAGGGGAG Usp28; Kiaa1515 mmu-miR-214 42 70 -GACGGACAG---ACA--CGGACGACA- ||||||||: || |:|||:||| CCUGCCUGUUAUGUGGCAGUCUGUUGUG Usp28; Kiaa1515 mmu-miR-216b 43 82 AGUGUAAACGGA--------CGUC-----------UCUAAAGGG ||||| |||| ||||||||| ------CUGCCUGUUAUGUGGCAGUCUGUUGUGACAGAUUUCCCU Usp28; Kiaa1515 mmu-miR-219 3 20 UCUUAACGCAAACCUGUUAGU- || ||||||:||| -----CGCUCAUGGACAGUCAA Usp28; Kiaa1515 mmu-miR-221 40 60 UUUGGGUCGUCUGUUACAUCGA ||| || ||||:|| --CCCCUGCCUGUUAUGUGGCA Usp28; Kiaa1515 mmu-miR-222 18 60 CUCUGGGUCA--UC---GGUC-------------UACAUCGA ||||:|||| :| ||:| ||||:|| AAGACUCAGUCUGGUCUCCGGUCCCCUGCCUGUUAUGUGGCA Usp28; Kiaa1515 mmu-miR-23a 623 651 -CCUUUA----GGGAC-CG-UUACACUA ||: ||||| || ::||||| UGGGCUUCCAGCCCUGUGCUGGUGUGAC Usp28; Kiaa1515 mmu-miR-24 621 660 -GACA---AGG-------ACGACUUGACU-----CGGU- ||| ||| |||||: ||| |||| CCUGGGCUUCCAGCCCUGUGCUGGUGUGACAGAUGCCAC Usp28; Kiaa1515 mmu-miR-25 357 383 -AGUC-UGGCUCUGUUCA--CGUUAC |||| ||:||| ||:| |||:| AUCAGAACUGAGCCAGGGGAGCAGUU Usp28; Kiaa1515 mmu-miR-28 480 499 GAGUUAUC-UGA-CACUCGAGGAA- :| :|| |||||| |||| -----AGGUGCUGGUGAGC-CCUUC Usp28; Kiaa1515 mmu-miR-291a-3p 656 674 CCGUGUGUUUCACCUUCGUGAAA ||||||| |||| ||||| -CCACACAA---GGAA-CACUUA Usp28; Kiaa1515 mmu-miR-293 42 61 UGUGAUGUUUGAGACGCCGUGA ||:| ||:|||| --CCUGCCUGUUAUGUGGCAG- Usp28; Kiaa1515 mmu-miR-296 430 455 UGUC-CUAAC--UCCCCCCCGGGA- ||| ||||| || ||||:|:| CCAGAGAUUGGUAGUAGGGGUCUUG Usp28; Kiaa1515 mmu-miR-29a 464 489 UUGG---CUAAAG-UCUACCACGAU- :|| ||| ||| ||||||: UGCCAGUGAUGAAAAGA-GGUGCUGG Usp28; Kiaa1515 mmu-miR-29b 466 489 UUGUGACUAAAGUUUACCACGAU- || |||| ||: ||||||: -CCAGUGAUGAAAAGAGGUGCUGG Usp28; Kiaa1515 mmu-miR-29c 464 489 -UGG---CUAAAGUUUACCACGAU- :|| ||| ||: ||||||: UGCCAGUGAUGAAAAGAGGUGCUGG Usp28; Kiaa1515 mmu-miR-300 444 468 CUUCUCU---CGAA-CGGGAACGUAU |:|:| || ||:||||| UAGGGGUCUUGCCUGGCUCUUGCC-- Usp28; Kiaa1515 mmu-miR-302 354 384 -AGUGGUUUUGUA------CCUUCGUGAAU |||:||:||| ||:|||| || CUCAUCAGAACUGAGCCAGGGGAGCAGUUU Usp28; Kiaa1515 mmu-miR-302b 362 384 GAUGAUUUUGUACCUUCGUGAA- |||:|: || ||:|||| || -AACUGAGCCAGGGGAGCAGUUU Usp28; Kiaa1515 mmu-miR-302c 362 384 GGUGACUUUGUACCUUCGUGAAC |||||: || ||:|||| || -AACUGAGCCAGGGGAGCAGUUU Usp28; Kiaa1515 mmu-miR-31 447 469 GUCGAUACGG-UCGUAGAACGGA :|: |||| :|| ||||||| GGGUCUUGCCUGGC-UCUUGCCA Usp28; Kiaa1515 mmu-miR-32 918 943 -CGUU--GAAUCAUUACACGUUAU- |||: :||| ||||||||||| UGCAGGUUUUAUAAAUGUGCAAUAA Usp28; Kiaa1515 mmu-miR-324-3p 443 473 GGUCGUCG---UGGACCC----C-GUCACC :|| :|: :||||| | ||||| GUAGGGGUCUUGCCUGGCUCUUGCCAGUGA Usp28; Kiaa1515 mmu-miR-324-5p 362 380 GUGGUUACGGGAUCCCCUACGC ||::| ||| |||||| || AACUGA-GCC--AGGGGA-GCA Usp28; Kiaa1515 mmu-miR-328 198 221 -UGCCUUC--CCGUCUCUCCCGGUC- || |||| ||||| || ||||| CACUGAAGAAGGCAG-GA--GCCAGU Usp28; Kiaa1515 mmu-miR-329 475 492 -UUUUUCCAAUCGACCCACACAA |||:|||| ||||| || AAAAGAGGU--GCUGG-UGA--- Usp28; Kiaa1515 mmu-miR-330 621 649 AGAGACGUC---CGGGACACGAA-ACG- || || |||||||||| ||: CCUGGGCUUCCAGCCCUGUGCUGGUGUG Usp28; Kiaa1515 mmu-miR-331 431 452 AAGAUC-CUAUCCGG-GUCCCCG- || ||| ||: :|||||: ---CAGAGAUUGGUAGUAGGGGUC Usp28; Kiaa1515 mmu-miR-335 451 467 UGUAAAAAGCAAUAACGAGAACU |:| ||||||| ------CUUGCCUG-GCUCUUGC Usp28; Kiaa1515 mmu-miR-339 622 668 -ACUCGAG-----------GACCUC-CUGUC--------- CCU ||:|||: |||| | ||||| ||| CUGGGCUUCCAGCCCUGUGCUGGUGUGACAGAUGCCACACAAGGAA Usp28; Kiaa1515 mmu-miR-340 873 902 -CCGA--UAUUUCAUUG--ACUCUGCCU- || ||::|| ||: ||:|| ||| AGGAUUAAUGGAGCAAUCAUGGGAGGGAA Usp28; Kiaa1515 mmu-miR-345 435 457 CGUGACC-UGAUCCCCAGU-CGU |:||| | |||||||| || -GAUUGGUAGUAGGGGUCUUGCC Usp28; Kiaa1515 mmu-miR-34c 693 720 -CGUUAGUC-GAU--UGAUGUGACGGA- |||: | ||| :|||| | |||| AGCAGGU-GUCUAAGGCUACCCGGCCUA Usp28; Kiaa1515 mmu-miR-374-3p 880 918 GAGCCU-GUUACUAU---------------UAUGUUGG- :||| |||| ||: |||||||: -AUGGAGCAAUCAUGGGAGGGAAGAACACAAUACAACUA Usp28; Kiaa1515 mmu-miR-383 1 36 UCGG--------UGUCAGUG--GA---AGACUAGA- ||| ||||||| || ||||:||| -GCCGCUCAUGGACAGUCAAGACUCAGUCUGGUCUC Usp28; Kiaa1515 mmu-miR-424 465 492 AGGUUUUGUACUUA-----ACGACGAC- || |: ||||| ||||| || GCC-AGUGAUGAAAAGAGGUGCUGGUGA Usp28; Kiaa1515 mmu-miR-463 80 101 ACUACCUGUUG-UUUAAUCCAU- ||||||: ::|||:|||: --CUGGACAGAGGGAUUGGGUGU Usp28; Kiaa1515 mmu-miR-465-5p 295 317 AGUGUAGUCACGGU-AAGAUUUAU || || |||||| ||:||||| -AACCUC-GUGCCACUUUUAAAUU Usp28; Kiaa1515 mmu-miR-484 88 112 UAGCCCU--CCC-CUGACUCGGACU- |||| ||| | |||||| || --AGGGAUUGGGUGUCUGAGCGAGAU Usp28; Kiaa1515 mmu-miR-485-5p 612 639 -CUUAAGUA-GUGCCG---GUCGGAGA- ||| ||| | ||| ||||| || AGAAAGCAUCCUGGGCUUCCAGCC-CUG Usp28; Kiaa1515 mmu-miR-497 616 648 AUGUUUGGUGUC----------ACACGACGAC- :|| || :| ||||||| || AGCAU-CCUGGGCUUCCAGCCCUGUGCUGGUGU Usp28; Kiaa1515 mmu-miR-500 455 487 -GACUUGGGAACGGG-----------UCCACGUA ||| :|:|||||| |||||| CCUG-GCUCUUGCCAGUGAUGAAAAGAGGUGCU- Usp28; Kiaa1515 mmu-miR-501 74 93 -AAAGUGGGUCCCUGUUUCCUAA |||| ||: |||||:|||: AUUUC-CCU--GGACAGAGGGA- Usp28; Kiaa1515 mmu-miR-542-5p 66 85 GCACUGUACUACUAGGGGCUC |||||| ||| ||||:|: UGUGACA-GAUU-UCCCUGGA Usp28; Kiaa1515 mmu-miR-546 295 310 CUGAGGCACGGUGGUA || :||||||||: AACCUCGUGCCACUU- Usp28; Kiaa1515 mmu-miR-551b 425 453 GUGACUUUGGU------UCAUA---CCCAGC :|| |||| :||| ||||| AGCU---ACCAGAGAUUGGUAGUAGGGGUCU Usp28; Kiaa1515 mmu-miR-652 482 522 -ACGUGU---UGGGA------------UCAC-CGCGGUAA ||| : :|||| || ||||||| GUGCUGGUGAGCCCUUCCUUCCACAUAAGGCUGCGCCAUG Usp28; Kiaa1515 mmu-miR-665 623 647 AUUCCCUGGA-GUCGG---AGGACCA- ||:|:| ||||| | ||||| ---UGGGCUUCCAGCCCUGUGCUGGUG Usp28; Kiaa1515 mmu-miR-666 457 491 -CCGAGAGU-GUCGA----------CACGGGCGA ||||||:: |||: ||||: |: UGGCUCUUGCCAGUGAUGAAAAGAGGUGCUGGUG Usp28; Kiaa1515 mmu-miR-667 622 649 GAACCCGACCC-----AC-CGUCCACAGU |||||| || || ||||| -CUGGGCUUCCAGCCCUGUGCUGGUGUG- Usp28; Kiaa1515 mmu-miR-669a 645 665 UGUACU-UGUACGUGUGUGUUGA :||| | |||| ||||||| -UGUGACAGAUGC-CACACAAG- Usp28; Kiaa1515 mmu-miR-673 619 642 GAGGUUCCU--GGUCUCGACACUC ||| :|| |||| ||||| AUCCUGGGCUUCCAGCCCUGUGC- Usp28; Kiaa1515 mmu-miR-674 113 141 AUGUGGUGAGGGU--AGAGU----CACG- | ||| ||||| ||||: |||: CAGACC-CUCCCCCCUCUCGUGAUGUGUG Usp28; Kiaa1515 mmu-miR-674* 363 383 AACAAGACUCUA--CCCUCGACAC ||||| |||||| || ----ACUGAGCCAGGGGAGCAGUU Usp28; Kiaa1515 mmu-miR-675-5p 483 521 -UGA-CACCCGGGAAA-------------GGCGUGGU- :|| ||| |||||| |:||:||| UGCUGGUGAGCCCUUCCUUCCACAUAAGGCUGCGCCAU Usp28; Kiaa1515 mmu-miR-677 177 206 AGUCU--------UCGAUUAGUAGUGACUU- |||| ||||| |||||||| ACAGAACCACAAGAGCUAUU--UCACUGAAG Usp28; Kiaa1515 mmu-miR-679 15 43 UGGUUCU----CAGU--GGAGUGUCAGG- :||||| ||| :||| |:|||| GUCAAGACUCAGUCUGGUCUC-CGGUCCC Usp28; Kiaa1515 mmu-miR-680 633 659 GGGGGUA----CAGUC-GUCUACGGG |||::| || | |||||||| GCCCUGUGCUGGUGUGACAGAUGCCA Usp28; Kiaa1515 mmu-miR-683 323 351 CUCC-UGUGUC-GAA--UGUCGU---CC- ||| || ||| ||| |||||| || CAGGCAC-CAGUCUUUGACAGCAAAAGGG Usp28; Kiaa1515 mmu-miR-684 509 542 AACUGA------ACU--------UCCCUUUUGA- |:|| ||| |||||||:|| -AGGCUGCGCCAUGAAGCCGCCAAGGGAAAGCUG Usp28; Kiaa1515 mmu-miR-685 452 474 CACGGAGUG-GAGUCGGUAACU- ||||| :| ||: |||| ||| UUGCCUGGCUCUU-GCCAGUGAU Usp28; Kiaa1515 mmu-miR-686 363 383 AGAAGUGGCAGACCCUUCGUUA- || :|| |||:||||:| ACUGAGCCA---GGGGAGCAGUU Usp28; Kiaa1515 mmu-miR-689 351 378 CCUGGGGC-----GGCUCG--CCCCUGC |||:| |:|||| ||||| UGACUCAUCAGAACUGAGCCAGGGGAG- Usp28; Kiaa1515 mmu-miR-692 478 494 CUCACUCCGCGAGUUUCUCUA ||||:||| : ||| ---AGAGGUGCUGGU-GAGC- Usp28; Kiaa1515 mmu-miR-693-3p 522 544 AAUGUCGGUGUAGA-CUUUCGACG- ||||:| ||||||||| ---AAGCCGCCAAGGGAAAGCUGCA Usp28; Kiaa1515 mmu-miR-695 12 36 AAGUCAGUG--GAUACGGGUUAGA- |||||| || |:|:::||| -ACAGUCAAGACUCAGUCUGGUCUC Usp28; Kiaa1515 mmu-miR-698 87 112 -UCCCU--UCC-----UUUGCUCUUAC ||||| :|| :|:||||| GAGGGAUUGGGUGUCUGAGCGAGAU-- Usp28; Kiaa1515 mmu-miR-7 12 39 -GUU-GUUUU-AGU--GAUCAGAAGGU- ||: |||:| ||| ||:|||| ||: ACAGUCAAGACUCAGUCUGGUCU-CCGG Usp28; Kiaa1515 mmu-miR-700 28 51 CCACCUGAG-CCAA-GGGCGCAC- ||| ||| ||| ||:|| || -CUGGUCUCCGGUCCCCUGCCUGU Usp28; Kiaa1515 mmu-miR-705 482 507 -ACGGG----UGGGGUGGAGGGUGG |||: :|||: |||:|||| GUGCUGGUGAGCCCUUCCUUCCACA Usp28; Kiaa1515 mmu-miR-706 364 387 AAAAAACUCUGUCCCAA----AGAGA- |||| ||||| |:||| ----CUGAGCCAGGGGAGCAGUUUCUA Usp28; Kiaa1515 mmu-miR-709 249 275 AGGAG--GACGGAGACG----GAGG- ||| ||||||:||: |||| ACCUGAACUGCCUUUGUAAAUCUCCC Usp28; Kiaa1515 mmu-miR-710 264 287 GAGUUGAGAGGG-GUUCUGAACC- :|| |||||| :|| |||||| -GUAAAUCUCCCAUAACACUUGGG Usp28; Kiaa1515 mmu-miR-711 25 44 GAAUGUAGAG-AGGGGCCCAGGG- :||| ||:||| ||||| ----AGUCUGGUCUCCG-GUCCCC Usp28; Kiaa1515 mmu-miR-712* 337 358 GUUGUGGGCC-CCCACUGAGCGU :||| | ||||||||| UGACAGCAAAAGGGUGACUCA-- Usp28; Kiaa1515 mmu-miR-717 85 107 UCUCUUCCAUAGAG-ACAGACUC- |||:|| ||: |||||||| -CAGAGGG-AUUGGGUGUCUGAGC Usp28; Kiaa1515 mmu-miR-720 93 113 -ACCUCCGGGGUCGCUCUA- |||: |:|: |||||||| UUGGGUGUCUGAGCGAGAUU Usp28; Kiaa1515 mmu-miR-744 483 519 -CGACAA-UCGGGA-------------UCGGGGCGU |||| |||||| :||: ||| UGCUGGUGAGCCCUUCCUUCCACAUAAGGCUGCGCC Usp28; Kiaa1515 mmu-miR-762 26 50 CGAGA-CAG-GGCC-GGGGUCGGGG ||| ||| |||| |||| |||: -GUCUGGUCUCCGGUCCCCUGCCUG Usp28; Kiaa1515 mmu-miR-763 616 646 -CGGU-GACCA--AGAA-GGGU--CGACC- || |||| || ||| ||||| AGCAUCCUGGGCUUCCAGCCCUGUGCUGGU Usp28; Kiaa1515 mmu-miR-764-3p 35 65 UGUCA----ACGGUGA---UACCGG-AGGA |:|| |||| | :|||| ||: CCGGUCCCCUGCCUGUUAUGUGGCAGUCUG Usp28; Kiaa1515 mmu-miR-764-5p 478 497 UCCUCCUGUA-CACUCGUGG- |||| |||||| || -AGAGGUGCUGGUGAGC-CCU Usp28; Kiaa1515 mmu-miR-99b 425 452 GCG-----UUCCAGCCAAGAUGCCCAC || :|| |:||| || |||| AGCUACCAGAGAUUGGUAGUAGGGGUC Usp28; Kiaa1515 mmu-miR-136 879 886 A------------------GGUAGU-AGUUUUGU-UUACCUCA ||| |:||:: ||||||| UUGGAAACUCAUGUUUUAACCAAAUUUUAAGGAUUAAUGGAGC Usp28; Kiaa1515 mmu-miR-149 213 220 CCUCA----------------------CUUCUGUGCCUCGGUCU ||||:|| |||||||| CAGAACCACAAGAGCUAUUUCACUGAAGAAGGCA-GGAGCCAGU Usp28; Kiaa1515 mmu-miR-149 366 373 C----------------CUCACU------UCUGUGCCUCGGUCU |:|||| ||| || |||||||: AGUCUUUGACAGCAAAAGGGUGACUCAUCAGA-ACUGAGCCAGGG Usp28; Kiaa1515 mmu-miR-185 737 744 ---------------------CUUGAC----GGAAAGAGAGGU |||:| ||||||||||| CUAAGGCUACCCGGCCUAAGAGAAUUUUGAUCCUUUCUCUCCC Usp28; Kiaa1515 mmu-miR-188 144 151 -------UGGGAGGUGG------------UAC--GUUCCCUAC ||||||| || :|| :||||||| GAUUCAGACCCUCCCCCCUCUCGUGAUGUGUGUUUAAGGGAUU Usp28; Kiaa1515 mmu-miR-188 766 773 U------GGGAGGUGGUAC----------------GUUCCCUAC |:|||| |: :|||||||| AUCCUUUCUCUCC-CUUUUUUUUUUUUAAAGAAAAUAAGGGAUGU Usp28; Kiaa1515 mmu-miR-216b 73 80 AGUGUAAACGGACGUC-------------------UCUAAAGGG ||||||: ||||||||| GUCCCC-UGCCUGUUAUGUGGCAGUCUGUUGUGACAGAUUUCCCU Usp28; Kiaa1515 mmu-miR-24 364 371 GA-------------------CAAGGACGA--CUUGACUCGGU || || ||||||||||| CCAGUCUUUGACAGCAAAAGGGUGACUCAUCAGAACUGAGCCAG Usp28; Kiaa1515 mmu-miR-31 450 457 ---------GUCGAUACGGUCG--------------UAGAACGGA |||||| |||| :|||||||| AAAAGUCCUCAGCUA--CCAGAGAUUGGUAGUAGGGGUCUUGCCUG Usp28; Kiaa1515 mmu-miR-31 461 468 G---------------------UCGAUACGG-UCGUAGAACGGA :|: |||| :|| ||||||| GCUACCAGAGAUUGGUAGUAGGGGUCUUGCCUGGC-UCUUGCCA Usp28; Kiaa1515 mmu-miR-32 934 941 --------------------CGUUGAAUCA--UUACACGUUAU |||: || ||||||||||| GAAGAACACAAUACAACUAUGCAGGUUUUAUAAAUGUGCAAUAA Usp28; Kiaa1515 mmu-miR-331 369 376 AAGA---------UCCUAU-------------CCGGGUCCCCG |||:|: | ||||||| CUUUGACAGCAAAAGGGUGACUCAUCAGAACUGAGCCAGGGGA Usp28; Kiaa1515 mmu-miR-335 459 466 UGUAAAA---------------------AGCAAUAACGAGAACU |:| ||||||| CAGCUACCAGAGAUUGGUAGUAGGGGUCUUGCCUG-GCUCUUGC Usp28; Kiaa1515 mmu-miR-374-3p 909 916 GAG---------------------CCUGUUACUAUUAUGUUGG ||| ||||||||: GGAUUAAUGGAGCAAUCAUGGGAGGGAAGAACACAAUACAACUA Usp28; Kiaa1515 mmu-miR-652 514 521 ----ACGUG---UUGGGA------------UCAC-CGCGGUAA ||| |:|||| || ||||||| GAGGUGCUGGUGAGCCCUUCCUUCCACAUAAGGCUGCGCCAUG Usp28; Kiaa1515 mmu-miR-667 696 703 GAACCCGACCCAC--------------------CGUCCACAGU ||||||||| CAAGGAACACUUAAUAGUUAAUAAUCAUCAGAAGCAGGUGUCU Usp28; Kiaa1515 mmu-miR-669c 911 918 UG--------------------------UGUGUAGGUGUGUGUUGAUA ||||| |:|||||||| AUUAAUGGAGCAAUCAUGGGAGGGAAGAACACA-----AUACAACUAUG Usp28; Kiaa1515 mmu-miR-671 625 632 GGAGGUCGGGG--------------------AGGUCCCGAAGGA |:|||:|:: ||| |||||||| A-UUCAGUCUUGAGUGAAAGAAAAGAAAGCAUCCUGGGCUUCCA Usp28; Kiaa1515 mmu-miR-677 197 204 A-----------------------GUCUUCGAUUAGUAGUGACUU || ||||| |||||||| UUGCACAUUUUAGGUACAGAACCACAAGAGCUAUU--UCACUGAAG Usp28; Kiaa1515 mmu-miR-680 651 658 G-----------------GGGGUACAGUC-----GUCUACGGG |||::|| :| |||||||| AGCAUCCUGGGCUUCCAGCCCUGUGCUGGUGUGACAGAUGCCA Usp28; Kiaa1515 mmu-miR-693-3p 535 542 AAUG-------------------UCGGUGUAGA-CUUUCGACG ||||:| ||||||||| UUCCACAUAAGGCUGCGCCAUGAAGCCGCCAAGGGAAAGCUGCA Usp28; Kiaa1515 mmu-miR-708 383 390 A----------------------UCUUCGAGUGUC--AGAUCAAC ||::| :||| ||||||| GGGUGACUCAUCAGAACUGAGCCAGGGGA--GCAGUUUCUAGUUA Usp28; Kiaa1515 mmu-miR-717 98 105 UC---------------------UCUUCCAUAGAG-ACAGACUC |||:|| ||: |||||||| UGUUGUGACAGAUUUCCCUGGACAGAGGG-AUUGGGUGUCUGAGC Usp28; Kiaa1515 mmu-miR-720 104 111 -------------------------ACCUCCGGGGUCGCUCUA |||: |:|: |||||||| GACAGAUUUCCCUGGACAGAGGGAUUGGGUGUCUGAGCGAGAUU Usp28; Kiaa1515 mmu-miR-762 630 637 CGAGAC-------------------AGGGCC--GGGGUCGGGG |||:|| ::|||||||: GUCUUGAGUGAAAGAAAAGAAAGCAUCCUGGGCUUCCAGCCCUG Usp28; Kiaa1515 mmu-miR-92 934 941 ---------------------GUCCGGCCCUGUU-CACGUUAU ||||:: |||||||| GAAGAACACAAUACAACUAUGCAGGUUUUAUAAAUGUGCAAUAA Usp28; Kiaa1515 mmu-let-7b 240 263 uuGGUGUGUUGGA--UGAUGGAgu |:| | :|||| |||:||| tcCTAGAAGACCTGAACTGCCTtt Usp28; Kiaa1515 mmu-let-7c 240 263 uuGGUAUGUUGGA--UGAUGGAgu |:| | :|||| |||:||| tcCTAGAAGACCTGAACTGCCTtt Usp28; Kiaa1515 mmu-let-7i 177 199 UGUC---GUGUUUGAUGAUGGAGU |||| |||||: :|||::||| ACAGAACCACAAG-AGCTATTTCA Usp28; Kiaa1515 mmu-miR-103 620 645 AGUAUC---GGGACAUGUUACGACga || |:| :|| | | :||||| TCCTGGGCTTCCAGCCCTGTGCTGgt Usp28; Kiaa1515 mmu-miR-124a 285 308 CCGUA-AG---UGGCGCACGGaau ||: | || ||| |||||| GGTTTGTCTAAACCTCGTGCCact Usp28; Kiaa1515 mmu-miR-127 15 38 CGGUUC-GAGUCUG-CC-UAGGCu |:|||| ||||| | || |||| GTCAAGACTCAGTCTGGTCTCCGg Usp28; Kiaa1515 mmu-miR-133a 358 380 uGUC--GAC-CAACUUCCCCUGGUu ||| ||| | |||||| || tCAGAACTGAG--CCAGGGGAGCAg Usp28; Kiaa1515 mmu-miR-133b 357 380 aucgaccaACU---UCCCCUGGUu ||| |||||| || atcagaacTGAGCCAGGGGAGCAg Usp28; Kiaa1515 mmu-miR-135a 502 529 aGUGUAUCCUUA-----UUUUUCGGuau |||||| |: | | :||||| cCACATAAGGCTGCGCCATGAAGCCgcc Usp28; Kiaa1515 mmu-miR-136 862 886 aGG--UAGUAGUUUUGUUUACCUCa || ||: | |::|: ||||||| aCCAAATTTTAAGGATTAATGGAGc Usp28; Kiaa1515 mmu-miR-138 319 334 cuAAGUGUUGUGGUCga |||| ::|||||| ccTTCA-GGCACCAGtc Usp28; Kiaa1515 mmu-miR-140* 620 643 AGG-CACCAAGAU-GGGACACCAu ||| | | ||| | ||||||| | TCCTGGGCTTCCAGCCCTGTGCTg Usp28; Kiaa1515 mmu-miR-149 200 220 ccucaCUUCUGUGCCUCGGUCu ||||:|| |||||||| ctgaaGAAGGCA-GGAGCCAGt Usp28; Kiaa1515 mmu-miR-149 347 373 cCUCACU------UCUGUGCCUCGGUCu |:|||| ||| || ||||||| aGGGTGACTCATCAGA-ACTGAGCCAGg Usp28; Kiaa1515 mmu-miR-150 78 100 GUGACCAUGU-UCCC-AACCCUCu | |||| ||| |||| ||||| | CCCTGG-ACAGAGGGATTGGGTGt Usp28; Kiaa1515 mmu-miR-15a 629 646 guGUUUGGUAAUACACGACGAu ||: || ||||||| | tcCAGCCC----TGTGCTGGTg Usp28; Kiaa1515 mmu-miR-181a 584 606 uGAGUGGCUGUCGCAACUUACaa ||||| |||: ||||:|| cCTCACATTCAGTCTTGAGTGaa Usp28; Kiaa1515 mmu-miR-181c 584 606 uGAGUGGCUGUC-CAACUUACaa ||||| ||| ||||:|| cCTCACATTCAGTCTTGAGTGaa Usp28; Kiaa1515 mmu-miR-183 280 308 gucACUUA---AGAU---GGUCACGGUau ||::| |||| |: |||||| actTGGGTTTGTCTAAACCTCGTGCCAct Usp28; Kiaa1515 mmu-miR-184 21 42 UGGGAAUAGUCAAGAGG-CAGGu ||:| :|| | ||||| |||| ACTC-AGTCTGGTCTCCGGTCCc Usp28; Kiaa1515 mmu-miR-185 723 744 CUU--GAC--GGAAAGAGAGGu ||| :|| ||||||||||| GAATTTTGATCCTTTCTCTCCc Usp28; Kiaa1515 mmu-miR-185 253 275 CUUGACGGAA------AGAGAGGU |||||||||| |||| ||| GAACTGCCTTTGTAAATCTC-CCA Usp28; Kiaa1515 mmu-miR-187 649 672 gGCCGACGUUGUGUUC--UGUGcu | | ||| ||||||| |||| aCAGATGCCACACAAGGAACACtt Usp28; Kiaa1515 mmu-miR-188 116 151 UGGGAGGUGG--------UAC------GUUCCCUAc ||||||| || ||| :||||||| ACCCTCCCCCCTCTCGTGATGTGTGTTTAAGGGATt Usp28; Kiaa1515 mmu-miR-188 752 773 ugggaggugguacgUUCCCUAC |||||||| tttttaaagaaaatAAGGGATG Usp28; Kiaa1515 mmu-miR-193 456 471 GACCCUGAAACAUCCGGUCAa |||| ||| |||||| CTGGCTCTT-----GCCAGTg Usp28; Kiaa1515 mmu-miR-196b 688 714 gGUUGUUGUCC------UUUGAUGGau ||: |:|||| |::||||| tCAGAAGCAGGTGTCTAAGGCTACCcg Usp28; Kiaa1515 mmu-miR-199a* 47 69 uugguUACA-CGUCUGAUGACAu |||| |||| ||::||| ctgttATGTGGCAGTCTGTTGTg Usp28; Kiaa1515 mmu-miR-204 323 352 GUCCGU-AUC--CUACUG----UUUCCCuu |||||| || |||| |||||| CAGGCACCAGTCTTTGACAGCAAAAGGGtg Usp28; Kiaa1515 mmu-miR-207 357 381 cuccCUCCUCUCGGU--CCUCUUCg || |||||| |||| || atcaGAACTGAGCCAGGGGAGCAGt Usp28; Kiaa1515 mmu-miR-211 324 352 UCCGU-UUC--CUACUG----UUUCCCuu ||||| || |||| |||||| AGGCACCAGTCTTTGACAGCAAAAGGGtg Usp28; Kiaa1515 mmu-miR-214 43 68 GACGGACAG-ACA----CGGACGACA ||||||||: ||| |:|||:||| CTGCCTGTTATGTGGCAGTCTGTTGT Usp28; Kiaa1515 mmu-miR-214 24 49 GACGGA-CAGA---CA-CGGACGaca | |:|| |||| || ||||| CAGTCTGGTCTCCGGTCCCCTGCctg Usp28; Kiaa1515 mmu-miR-216b 52 80 aguguaaaCGGACGUC----UCUAAAGGG |:|||: | ||||||||| atgtggcaGTCTGTTGTGACAGATTTCCC Usp28; Kiaa1515 mmu-miR-219 1 18 ucuuaaCGCAAACCUGUUAGU || ||||||:||| ---gccGCTCATGGACAGTCA Usp28; Kiaa1515 mmu-miR-221 38 59 uuuGGGUCGUCUGUUACAUCGa ||| || :: ||||:|| gtcCCCTGCCTGTTATGTGGCa Usp28; Kiaa1515 mmu-miR-222 35 59 cuCUGGGUCAUCGGUC--UACAUCGa |::|| | ||| | ||||:|| ccGGTCCCCT-GCCTGTTATGTGGCa Usp28; Kiaa1515 mmu-miR-23a 628 650 ccuuUAGGGAC-CG-UUACACUa | ||||| || ::||||| ttccAGCCCTGTGCTGGTGTGAc Usp28; Kiaa1515 mmu-miR-24 350 371 gACAAGGACGACUUGACUCGGU || :| | ||||||||||| gTGACTCATCAGAACTGAGCCA Usp28; Kiaa1515 mmu-miR-24 636 658 GACAAGGACGAC-UUGACU-CGGU ||| | ||| || :|| || |||| CTG-TGCTGGTGTGACAGATGCCA Usp28; Kiaa1515 mmu-miR-25 358 382 AGUC-UGGCUCUGU--UCACGUUAc |||| ||:||| || :| |||:| TCAGAACTGAGCCAGGGGAGCAGTt Usp28; Kiaa1515 mmu-miR-28 472 497 gAGUUAUCU----GA-CACUCGAGGAA | || ||| || |||||| |||| aTGAAAAGAGGTGCTGGTGAGC-CCTT Usp28; Kiaa1515 mmu-miR-291a-3p 655 673 CCGUGUGUUUCACCUUCGUGAAa | ||||||| |:| ||||| GCCACACAA----GGAACACTTa Usp28; Kiaa1515 mmu-miR-293 40 61 uGUGAUGUUUGAGACGCCGUga | ||:| ::| ||:|||| cCCCTGCCTGTTATGTGGCAgt Usp28; Kiaa1515 mmu-miR-29a 467 487 uuggcuaaagucuaCCACGAu |||||| cagtgatgaaaagaGGTGCTg Usp28; Kiaa1515 mmu-miR-29b 465 487 uuGUGACUAAAGUUUACCACGAu || |||| ||: |||||| gcCAGTGATGAAAAGAGGTGCTg Usp28; Kiaa1515 mmu-miR-29c 468 487 UGGCUAAAGUUUACCACGAu | :||| ||: |||||| AGTGATGAAAAGAGGTGCTg Usp28; Kiaa1515 mmu-miR-300 443 469 CUUCUCUCGAACGG-----GAACGuau | ||:|: |||||| ||||| GTAGGGGTCTTGCCTGGCTCTTGCcag Usp28; Kiaa1515 mmu-miR-302 355 383 AGUGGUUUU------GUACCUUCGUGAAu |||:||:|| || ||:|||| || TCATCAGAACTGAGCCAGGGGAGCAGTTt Usp28; Kiaa1515 mmu-miR-302b 361 382 gaUGAUUUUGUACCUUCGUGAA |||:|: || ||:|||| || gaACTGAGCCAGGGGAGCAGTT Usp28; Kiaa1515 mmu-miR-302c 361 383 ggUGACUUUGUACCUUCGUGAAc |||||: || ||:|||| || gaACTGAGCCAGGGGAGCAGTTt Usp28; Kiaa1515 mmu-miR-31 448 468 gucGAUACGGUCGUAGAACGGa || |||| | ||||||| ggtCT-TGCCTGGCTCTTGCCa Usp28; Kiaa1515 mmu-miR-32 919 941 CGUU--GAAUCAUUACACGUUAU |||: :||| ||||||||||| GCAGGTTTTATAAATGTGCAATA Usp28; Kiaa1515 mmu-miR-324-3p 440 472 ggUCGUC------GUGGACC-----CCGUCACc ||:|| ::||||| | ||||| gtAGTAGGGGTCTTGCCTGGCTCTTGCCAGTGa Usp28; Kiaa1515 mmu-miR-324-3p 421 446 GGUCGUCG-UGGAC-C---CCGUCAcc || |||| ||| | | ||:||| CC-TCAGCTACCAGAGATTGGTAGTag Usp28; Kiaa1515 mmu-miR-324-5p 356 379 GUGGUU---ACGGGAUCCCCUACGc ||:||: || | |||||| || CATCAGAACTGAGCCAGGGGA-GCa Usp28; Kiaa1515 mmu-miR-328 199 219 UGCCUUCCCGUCUCUCC-CGGUC || ||| | ||: ||| ||||| ACTGAA--GAAGGCAGGAGCCAG Usp28; Kiaa1515 mmu-miR-329 476 494 UUUUUCCAAUCGACCCACACaa |||:|||| ||| |||| | AAAGAGGT--GCT-GGTGAGcc Usp28; Kiaa1515 mmu-miR-330 624 646 agaGACGUCCGGGACACGAaacg || | |||||||||| gggCTTCCAGCCCTGTGCTggtg Usp28; Kiaa1515 mmu-miR-331 357 376 aAGAUCCUAUCCGGGUCCCCg || || | | ||||||| aTC-AGAACTGAGCCAGGGGa Usp28; Kiaa1515 mmu-miR-331 428 450 AAGAUC-CUAUCCG-GGUCCCCg | | || ||| ||: :||||| TACCAGAGATTGGTAGTAGGGGt Usp28; Kiaa1515 mmu-miR-339 630 655 acUCGAG----GACCUC-CUGUCccu ||| | |||| | ||||| ccAGCCCTGTGCTGGTGTGACAGatg Usp28; Kiaa1515 mmu-miR-340 874 900 CCGA--UAUUUCAUU-G-ACUCUGCCU || | ||::|| || | ||:|| ||| GGATTAATGGAGCAATCATGGGAGGGA Usp28; Kiaa1515 mmu-miR-345 434 456 cgUGACC-UGAUCCCCAG-UCGu |:||| | |||||||| || agATTGGTAGTAGGGGTCTTGCc Usp28; Kiaa1515 mmu-miR-34c 694 718 CGUUAGUCGAUU--GAUGUGACGGA |||: :: |||| |||| | |||| GCAGGTGTCTAAGGCTACCCGGCCT Usp28; Kiaa1515 mmu-miR-383 14 34 UCGGUGUCAGUGGAAGACUAGA ||:|| || | | ||||:||| AGTCA-AGACTCAGTCTGGTCT Usp28; Kiaa1515 mmu-miR-463 78 99 acuACCUGU-UGUUUAAUCCAu |||||| | ::|||:||| cccTGGACAGAGGGATTGGGTg Usp28; Kiaa1515 mmu-miR-465-5p 294 316 agUGUAGUCACGGU-AAGAUUUAu || || |||||| ||:||||| aaACCTC-GTGCCACTTTTAAATt Usp28; Kiaa1515 mmu-miR-484 78 104 uaGCCC--UC-CCCUGA--CUCGGACU | || || ||||:| | |:|||| ccCTGGACAGAGGGATTGGGTGTCTGA Usp28; Kiaa1515 mmu-miR-485-5p 613 638 CUUAAGUAGUGCC----GGUCGGaga ||| |||| :|| |||||| GAAAGCATCCTGGGCTTCCAGCCctg Usp28; Kiaa1515 mmu-miR-497 624 646 auguuuGGU-GUCACACGACGAC ||| | ||||||| || gggcttCCAGCCCTGTGCTGGTG Usp28; Kiaa1515 mmu-miR-500 456 487 GACUUGGGAACGG-----------GUCCACGua ||| :|:|||||| |||||| CTG-GCTCTTGCCAGTGATGAAAAGAGGTGCtg Usp28; Kiaa1515 mmu-miR-501 75 94 AAAGUGGGUCCCUG-UUUCCUAA |||| ||: |||| :|:||||| TTTC-CCT--GGACAGAGGGATT Usp28; Kiaa1515 mmu-miR-546 295 310 cUGAGGCACGGUGgua || :|||||||| aACCTCGTGCCACttt Usp28; Kiaa1515 mmu-miR-551b 429 452 guGACUUUGGU--UCAUACCCAGc | ||:|::: |||| ||||| acCAGAGATTGGTAGTAGGGGTCt Usp28; Kiaa1515 mmu-miR-615 441 465 uUCUCCCUCUG---GGUCCGAGccu || ||:| | || ||||| tAGTAGGGGTCTTGCCTGGCTCttg Usp28; Kiaa1515 mmu-miR-652 503 521 acGUGUUGGGAUCACCGCGGUAa ||:|| || ||||||| caCATAAGGCT----GCGCCATg Usp28; Kiaa1515 mmu-miR-665 605 626 auucccuggagUCGGAGGACCa ||| |||||| aaagaaaagaaAGCATCCTGGg Usp28; Kiaa1515 mmu-miR-666 447 471 CCGAGAGUG--UCGA-CACGGGCga || |||::| :||| |||| | GGGTCTTGCCTGGCTCTTGCCAGtg Usp28; Kiaa1515 mmu-miR-667 681 703 gaacccgacccacCGUCCACAGu ||||||||| ataatcatcagaaGCAGGTGTCt Usp28; Kiaa1515 mmu-miR-667 635 658 GAACCCGACC-CACCGUCCACAGU | || ||||| ||| ||| || || CCTGTGCTGGTGTGACAGATGCCA Usp28; Kiaa1515 mmu-miR-669a 644 665 uguACU-UGUACGUGUGUGUUga ||| | |||| ||||||| gtgTGACAGATGC-CACACAAgg Usp28; Kiaa1515 mmu-miR-669c 896 918 uguguguagGUG-UGUGUUGAUA ||| |:|||||||| agggaagaaCACAATACAACTAT Usp28; Kiaa1515 mmu-miR-671 609 632 ggaggucggGGAGGUCCCGAAGGa | ||| |||||||| aaaagaaagCATCCTGGGCTTCCa Usp28; Kiaa1515 mmu-miR-673 619 642 gAGGUUCC--UGGUCUCGACACuc ||| :|| |||| ||||| aTCCTGGGCTTCCAGCCCTGTGct Usp28; Kiaa1515 mmu-miR-674 115 134 aUGUGGUGAGGGUAGAGUCACg || || | ||| |||| ||| gAC-CCTCCCCCCTCTC-GTGa Usp28; Kiaa1515 mmu-miR-674* 359 382 aacaaGACUC--UACCCUCGACAc ||||| | |||||| || cagaaCTGAGCCAGGGGAGCAGTt Usp28; Kiaa1515 mmu-miR-675-5p 484 519 uGA-CACCCGGGAA---------A----GGCGUGGU || ||| |||||| | |:||:||| gCTGGTGAGCCCTTCCTTCCACATAAGGCTGCGCCA Usp28; Kiaa1515 mmu-miR-677 185 204 aGUCUUCGAUUAGUAGUGACUU || :||||| | |||||||| aCAAGAGCTATT--TCACTGAA Usp28; Kiaa1515 mmu-miR-679 8 29 UGGUUCUCAGUGGAGUGUCAGg |: :| ||||| | ||||| ATGGACAGTCAAGACTCAGTCt Usp28; Kiaa1515 mmu-miR-680 633 658 gGGGGUACAGUC-----GUCUACGGg |||::|| ::| |||||||| gCCCTGTGCTGGTGTGACAGATGCCa Usp28; Kiaa1515 mmu-miR-684 522 540 aacugaacUUCCCUUUUGA ||||||||:|| aagccgccAAGGGAAAGCT Usp28; Kiaa1515 mmu-miR-686 355 381 AGAAG---UGG--CAGACCCUUCGUUA || || ||: | | |||:||||:| TCATCAGAACTGAGCCAGGGGAGCAGT Usp28; Kiaa1515 mmu-miR-688 441 461 cUUAUUCAUCAG--CGGACgcu |:||:| :||| ||||| tAGTAGG-GGTCTTGCCTGgct Usp28; Kiaa1515 mmu-miR-689 351 378 cCUGGG--G-C--GGCUC-G-CCCCUgc |||:| | | |:||| | ||||| tGACTCATCAGAACTGAGCCAGGGGAgc Usp28; Kiaa1515 mmu-miR-692 467 483 cUCACUCCGCGAGUUUCUCUA ||||| | ||||||:| cAGTGATG----AAAAGAGGT Usp28; Kiaa1515 mmu-miR-693-3p 519 542 aAUGUCGGU-GUAGACUUUCGACG |: ||||: || ||||||||| aTGAAGCCGCCAAGGGAAAGCTGC Usp28; Kiaa1515 mmu-miR-695 11 29 aaGUCAGUGGAUACGGGUUAGA |||||| | |:||:||| gaCAGTCA---AGACTCAGTCT Usp28; Kiaa1515 mmu-miR-698 88 113 UCCCU--UCC-----UUUGCUCUUAc ||||| :|| :|:||||| | AGGGATTGGGTGTCTGAGCGAGATTc Usp28; Kiaa1515 mmu-miR-7 13 37 GUU-GUUUU-AGU--GAUCAGAAGGu ||: |||:| ||| ||:||| ||| CAGTCAAGACTCAGTCTGGTC-TCCg Usp28; Kiaa1515 mmu-miR-700 27 49 ccACCUGA-GCCA-AGGGCGCAC ||| || |||| ||:|| || tcTGGTCTCCGGTCCCCTGCCTG Usp28; Kiaa1515 mmu-miR-705 487 506 acggguGGGGUGGAGGGUGg |||: |||:|||| ggtgagCCCTTCCTTCCACa Usp28; Kiaa1515 mmu-miR-706 360 387 aaaaaACUCUGUCC------CAAAGAga |||| |||| |||||| agaacTGAGCCAGGGGAGCAGTTTCTag Usp28; Kiaa1515 mmu-miR-708 370 390 aUCUUCGAGUGUCAGAUCAAc ||::| || ||||||| cAGGGGAGCAGTTTCTAGTTa Usp28; Kiaa1515 mmu-miR-709 240 263 AGGA------GGACGGAGACGGAgg |||| |||| |||||| TCCTAGAAGACCTG-AACTGCCTtt Usp28; Kiaa1515 mmu-miR-710 263 285 gagUUGAGAGGG-GUUCUGAACC || |||||| :|| |||||| tgtAAATCTCCCATAACACTTGG Usp28; Kiaa1515 mmu-miR-711 22 42 GAAUGUAGAGAGGGGCCCAGGG || | :||| :|:| |||||| CTCA-GTCTGGTCTCCGGTCCC Usp28; Kiaa1515 mmu-miR-712* 340 359 GUUGUGGGCCCCCACUGAGcgu ||:|| ||||||||| CAGCA--AAAGGGTGACTCatc Usp28; Kiaa1515 mmu-miR-717 84 105 UCUCUUCCAUAGAGACAGACUC | |||:|| | |||||||| ACAGAGGGATTGGGTGTCTGAG Usp28; Kiaa1515 mmu-miR-720 94 111 ACCUCCGGGGUCGCUCUA |||: |:|: |||||||| TGGGTGTCTGAGCGAGAT Usp28; Kiaa1515 mmu-miR-744 484 518 CGA-CAAUCGGGA-------------UCGGGGCGu ||| || |||||| :||: ||| GCTGGTGAGCCCTTCCTTCCACATAAGGCTGCGCc Usp28; Kiaa1515 mmu-miR-762 614 637 cgagacAGGGCCGG--GGUCGGGg |||:|| | ||||||| aaagcaTCCTGGGCTTCCAGCCCt Usp28; Kiaa1515 mmu-miR-762 21 42 cGAGACAGGGCCGGGGUCGGGG ||| |||: | |:||:|:||| aCTCAGTCTGGTCTCCGGTCCC Usp28; Kiaa1515 mmu-miR-763 617 637 CG-GUGACCAAGAAGGGUCGacc || : |||| ||| ||||| GCATCCTGG-GCTT-CCAGCcct Usp28; Kiaa1515 mmu-miR-764-3p 12 37 UGUCA--AC--GGUGAUACCGGAGGa ||||| | :|| | |||:|||| ACAGTCAAGACTCAGTCTGGTCTCCg Usp28; Kiaa1515 mmu-miR-764-5p 477 496 UCCUCC-UGUACACUCGUGg | |||| :| |||||| | AAGAGGTGCTGGTGAGCCCt Usp28; Kiaa1515 mmu-miR-92 920 941 GUCCGGCCCUGUU--CACGUUAU ||||:: |:|| |||||||| CAGGTT-TTATAAATGTGCAATA Usp28; Kiaa1515 mmu-miR-92 206 226 gUCCGGCCCUGUUCACGUUAU |||| || :| |||||| || aAGGCAGGAGCCAGTGCATTA Usp28; Kiaa1515 mmu-miR-99b 429 451 gcGU-UCCAGCCAAGAUGCCCAc || || |:||| || |||| acCAGAGATTGGTAGTAGGGGTc

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp28 RAID00010427 mmu-miR-136-5p miRNA MIMAT0000148 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID00071267 mmu-miR-7092-3p miRNA MIMAT0028091 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID00088281 mmu-miR-374b-3p miRNA MIMAT0003728 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID00128186 mmu-miR-7a-1-3p miRNA MIMAT0004670 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID00336107 mmu-miR-873a-3p miRNA MIMAT0017279 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID00419337 mmu-miR-367-3p miRNA MIMAT0003181 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6559 Usp28 RAID00440441 mmu-miR-6997-5p miRNA MIMAT0027896 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID00549889 mmu-miR-216b-5p miRNA MIMAT0003729 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID00636546 mmu-miR-215-5p miRNA MIMAT0000904 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID00686654 mmu-miR-466f-3p miRNA MIMAT0004882 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID00720275 mmu-miR-504-3p miRNA MIMAT0017277 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID00749067 mmu-miR-92a-3p miRNA MIMAT0000539 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6559 Usp28 RAID00766492 mmu-miR-6413 miRNA MIMAT0025166 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID00796281 mmu-miR-7657-5p miRNA MIMAT0029820 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID00896533 mmu-miR-32-5p miRNA MIMAT0000654 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6559 Usp28 RAID00981182 mmu-miR-448-3p miRNA MIMAT0001533 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6308 Usp28 RAID01031710 mmu-miR-137-3p miRNA MIMAT0000149 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6559 Usp28 RAID01063866 mmu-miR-9-5p miRNA MIMAT0000142 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID01091237 mmu-miR-200b-3p miRNA MIMAT0000233 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6308 Usp28 RAID01105945 mmu-miR-29b-1-5p miRNA MIMAT0004523 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID01138808 mmu-miR-299a-5p miRNA MIMAT0000377 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID01154078 mmu-miR-217-5p miRNA MIMAT0000679 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6308 Usp28 RAID01216902 mmu-miR-6418-5p miRNA MIMAT0025173 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID01417171 mmu-miR-320-3p miRNA MIMAT0000666 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID01443531 mmu-miR-23a-3p miRNA MIMAT0000532 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6308 Usp28 RAID01526036 mmu-miR-429-3p miRNA MIMAT0001537 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6308 Usp28 RAID01611972 mmu-miR-3473a miRNA MIMAT0015645 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID01618473 mmu-miR-6924-3p miRNA MIMAT0027749 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID01650846 mmu-miR-31-5p miRNA MIMAT0000538 Usp28 mRNA 235323 Prediction 0.2381 Usp28 RAID01725430 mmu-miR-324-5p miRNA MIMAT0000555 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID01732077 mmu-miR-325-3p miRNA MIMAT0004640 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID01739230 mmu-miR-24-3p miRNA MIMAT0000219 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID01776385 mmu-miR-185-5p miRNA MIMAT0000214 Usp28 mRNA 235323 Prediction 0.2202 Usp28 RAID01792987 mmu-miR-669c-5p miRNA MIMAT0003479 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID02032545 mmu-miR-335-5p miRNA MIMAT0000766 Usp28 mRNA 235323 Prediction 0.2202 Usp28 RAID02040239 mmu-miR-669f-3p miRNA MIMAT0005839 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID02177651 mmu-miR-363-3p miRNA MIMAT0000708 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6559 Usp28 RAID02242597 mmu-miR-153-3p miRNA MIMAT0000163 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6592 Usp28 RAID02359416 mmu-miR-19b-3p miRNA MIMAT0000513 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID02384161 mmu-miR-467a-3p miRNA MIMAT0002108 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID02470322 mmu-miR-1192 miRNA MIMAT0005850 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6308 Usp28 RAID02470421 mmu-miR-200c-3p miRNA MIMAT0000657 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6308 Usp28 RAID02472071 mmu-miR-495-3p miRNA MIMAT0003456 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6308 Usp28 RAID02472393 mmu-miR-23b-3p miRNA MIMAT0000125 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6308 Usp28 RAID02543296 mmu-miR-882 miRNA MIMAT0004847 Usp28 mRNA 235323 Prediction 0.2202 Usp28 RAID02875826 mmu-miR-6909-5p miRNA MIMAT0027718 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID02984455 mmu-miR-184-3p miRNA MIMAT0000213 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID03004365 mmu-miR-25-3p miRNA MIMAT0000652 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6559 Usp28 RAID03117784 mmu-miR-592-3p miRNA MIMAT0017234 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID03202878 mmu-miR-19a-3p miRNA MIMAT0000651 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID03499484 mmu-miR-188-5p miRNA MIMAT0000217 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID03504087 mmu-miR-340-5p miRNA MIMAT0004651 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6559 Usp28 RAID03532316 mmu-miR-329-5p miRNA MIMAT0017032 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID03564044 mmu-miR-149-5p miRNA MIMAT0000159 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID03602185 mmu-miR-3094-3p miRNA MIMAT0014910 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID03605592 mmu-miR-490-3p miRNA MIMAT0003780 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6308 Usp28 RAID03625664 mmu-miR-467f miRNA MIMAT0005846 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID03756923 mmu-miR-6935-3p miRNA MIMAT0027771 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID03910941 mmu-miR-3473g miRNA MIMAT0031427 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID03928034 mmu-mir-325 miRNA MI0000597 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID03962600 mmu-miR-7061-3p miRNA MIMAT0028027 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID03986067 mmu-miR-669b-3p miRNA MIMAT0017250 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID04026385 mmu-miR-431-5p miRNA MIMAT0001418 Usp28 mRNA 235323 Prediction 0.1828 Usp28 RAID04039689 mmu-miR-92b-3p miRNA MIMAT0004899 Usp28 mRNA 235323 CLIP-seq//Prediction 0.6592