DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004616 mmu-miR-30c-1* 19200 Pstpip1 ccucAUUUGUUGGGAGAGGGUc | ||:|| : ||||||| acucUCAAUAAAUGUCUCCCAg 2 19 131 152 [mm9:9:55976658-55976679:+] 0.5033 158 7 -18.93 -0.7385 MIMAT0005438 mmu-miR-30c-2* 19200 Pstpip1 ucucAUUUGUCGGAAGAGGGUc | ||:| : ||||||| acucUCAAUAAAUGUCUCCCAg 2 19 131 152 [mm9:9:55976658-55976679:+] 0.5033 150 7 -16.82 -0.7422 MIMAT0004640 mmu-miR-325 19200 Pstpip1 aacuauccuccacGAGUUAUUu |||||||| ggugcuggcuacuCUCAAUAAa 2 10 121 142 [mm9:9:55976648-55976669:+] 0.4882 145 7 -12.09 -0.4224 MIMAT0004662 mmu-miR-139-3p 19200 Pstpip1 gaggUUGUCCCGGCG-CAGAGGu :| ||| : || |||||| ---gGAAAGGCUAGCAGUCUCCa 2 19 1 20 [mm9:9:55976528-55976547:+] 0.5714 122 6 -21.23 -0.5852 MIMAT0000742 mmu-miR-378* 19200 Pstpip1 ugugucCUGG-ACCUCAGUCCUc |||: || :||||||| cgcccuGACUGUGAGGUCAGGAc 2 17 29 51 [mm9:9:55976556-55976578:+] 0.5021 155 7 -20.40 -0.1221 MIMAT0003487 mmu-miR-697 19200 Pstpip1 agaGGUGUCCUGGUCCU-ACAa |:::: |::||||| ||| ugaCUGUGAGGUCAGGACUGUu 2 19 34 55 [mm9:9:55976561-55976582:+] 0.5021 122 0 -18.84 -0.2537 MIMAT0009405 mmu-miR-1941-5p 19200 Pstpip1 uucgGAGACAUGGUCGUAGAGGGa |||| |: | ::|||||| gcuaCUCUCAAUAAAUGUCUCCCa 2 21 128 151 [mm9:9:55976655-55976678:+] 0.5033 144 6 -17.48 -0.1159 MIMAT0009422 mmu-miR-1951 19200 Pstpip1 aucgguGUGGUCAGAGGUG-AUg :| |||||||||| || aaaggcUAGCAGUCUCCACAUAc 2 17 3 25 [mm9:9:55976530-55976552:+] 0.5714 132 0 -26.15 -0.2478 MIMAT0000144 mmu-miR-132 19200 Pstpip1 gcUGGUAC-CGACAUCUGACAAu ||::|| | | :||||||| ugACUGUGAGGUCAGGACUGUUu 2 21 34 56 [mm9:9:55976561-55976583:+] 0.5021 155 7 -18.99 -0.1401 MIMAT0000235 mmu-miR-202-3p 19200 Pstpip1 agaaggguacgcgaUAUGGAGa ||||||| cuagcagucuccacAUACCUCc 2 9 8 29 [mm9:9:55976535-55976556:+] 0.5021 140 7 -12.08 -0.1342 MIMAT0000383 mmu-let-7d 19200 Pstpip1 uuGAUACGUUGGA--UG-AUGGAGa ||| |||::|| || |||||| ggCUA-GCAGUCUCCACAUACCUCc 2 21 6 29 [mm9:9:55976533-55976556:+] 0.5714 129 6 -21.11 -0.1692 MIMAT0000521 mmu-let-7a 19200 Pstpip1 uuGAUAUGUUGGA--UG-AUGGAGu ||| :||::|| || |||||| ggCUA-GCAGUCUCCACAUACCUCc 2 21 6 29 [mm9:9:55976533-55976556:+] 0.5714 125 6 -18.38 -0.1692 MIMAT0000522 mmu-let-7b 19200 Pstpip1 uuGGUGUGUUGGA--UG-AUGGAGu |:| :||::|| || |||||| ggCUA-GCAGUCUCCACAUACCUCc 2 21 6 29 [mm9:9:55976533-55976556:+] 0.5714 121 6 -17.69 -0.1676 MIMAT0000523 mmu-let-7c 19200 Pstpip1 uuGGUAUGUUGGA--UG-AUGGAGu |:| :||::|| || |||||| ggCUA-GCAGUCUCCACAUACCUCc 2 21 6 29 [mm9:9:55976533-55976556:+] 0.5714 121 6 -17.69 -0.1692 MIMAT0000525 mmu-let-7f 19200 Pstpip1 uuGAUAUGUUAGA--UG-AUGGAGu ||| :||:||| || |||||| ggCUA-GCAGUCUCCACAUACCUCc 2 21 6 29 [mm9:9:55976533-55976556:+] 0.5714 129 6 -19.55 -0.1708 MIMAT0000659 mmu-miR-212 19200 Pstpip1 accGGCACU-GACCUCUGACAAu |:|||| | :||||||| ugaCUGUGAGGUCAGGACUGUUu 2 20 34 56 [mm9:9:55976561-55976583:+] 0.5021 154 7 -19.56 -0.1374

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G037216 Pstpip1 Mus musculus 19200

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Pstpip1 mmu-miR-27a beg:27 end:43 pic:3' CGCCTTGAATCGG---TGACACTT 5'& ||| |||||||. &5' ----------GCCCTGACTGTGAG 3' Pstpip1 mmu-miR-27b beg:27 end:43 pic:3' CGTCTTGAATCGG---TGACACTT 5'& ||| |||||||. &5' ----------GCCCTGACTGTGAG 3' Pstpip1 mmu-miR-202-3p beg:12 end:29 pic:3' AGAAGGGTACGCGATATGGAGA 5'& ||.| | | ||||||| &5' ---TCTC---CAC-ATACCTC- 3' Pstpip1 mmu-miR-132 beg:40 end:56 pic:3' GCTGGTACCGACATCTGACAAT 5'& ||. .||||||| &5' -------GGTCA-GGACTGTT- 3' Pstpip1 mmu-miR-293 beg:160 end:169 pic:3' TGTGATGTTTGAGACGCCGTGA 5'& ||||||| &5' --------------GCGGCAC- 3' Pstpip1 mmu-miR-378star beg:32 end:51 pic:3' TGTGTCCTGG-ACCTCAGTCCTC 5'& |||. || ||||||| &5' ------GACTGTGAGGTCAGGA- 3' Pstpip1 mmu-miR-1306 beg:59 end:83 pic:3' GTAGTGGTGGTCTCGGT-TGCA 5'& |||||||.|| .||| ||| &5' CATCACCGCCCAGGCCTCACG- 3' Pstpip1 mmu-miR-139-3p beg:3 end:21 pic:3' GAGGTTGTCCCGG-CG-CAGAGGT 5'& |||. || ||||||| &5' ---------GGCTAGCAGTCTCCA 3' Pstpip1 mmu-miR-145 beg:97 end:119 pic:3' TCC-CTAAGGACCCTTTTGACCTG 5'& || |.| ||||||| |||.| &5' -GGTGGTG-CTGGGAA---TGGGC 3' Pstpip1 mmu-miR-149 beg:71 end:91 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& |. |||||.|||||| &5' ------GGCCTCACGGGGCCAGA 3' Pstpip1 mmu-miR-185 beg:42 end:64 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& ||||| ||||. ||||.|||| &5' TCAGG-ACTGT--TTCTTTCCA 3' Pstpip1 mmu-miR-212 beg:36 end:56 pic:3' ACCGGCACTGACC---TCTGACAAT 5'& |.|||| || .||||||| &5' ---CTGTGA--GGTCAGGACTGTT- 3' Pstpip1 mmu-miR-2182 beg:98 end:119 pic:3' GCGCCGC-ACCCTTTACACCGCA 5'& |.||.| |||| |||| ||| &5' -GTGGTGCTGGG-AATG-GGC-- 3' Pstpip1 mmu-miR-30c-1star beg:134 end:153 pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& ||.|| . |||||||| &5' ------AATAAATGTCTCCCAG 3' Pstpip1 mmu-miR-30c-2star beg:134 end:153 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& ||.| |||||||| &5' ------AATAAATGTCTCCCAG 3' Pstpip1 mmu-miR-338-3p beg:107 end:129 pic:3' GTTGTTTTAGT-GA-CTACGACCT 5'& ..||| . || |.|||||| &5' ----GGAATGGGCTGGGTGCTGG- 3' Pstpip1 mmu-miR-678 beg:95 end:113 pic:3' GGAGGTCAGGAACGTGGCTCTG 5'& ||.|| | |.|.|| &5' ---CCGGTG---GTGCTGGGA- 3' Pstpip1 mmu-miR-706 beg:38 end:61 pic:3' AAAAAACTCT-GTCC---CAAAGAGA 5'& ||||. |||| ||||||.| &5' -----TGAGGTCAGGACTGTTTCTTT 3' Pstpip1 mmu-miR-879 beg:66 end:80 pic:3' CCGAATCTCGATATTCGGAGA 5'& || |.||||| &5' --------GCCC-AGGCCTC- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Pstpip1 mmu-let-7e 6 30 -UGAUAUGUUGGAGG---AUGGAGU :||| :||::|||| |||||| GGCUA-GCAGUCUCCACAUACCUCC Pstpip1 mmu-let-7f 6 30 -UGAUAUGUUAGA--UG-AUGGAGU :||| :||:||| || |||||| GGCUA-GCAGUCUCCACAUACCUCC Pstpip1 mmu-let-7g 105 139 -UGACA--UGUUUGA--------UGAUG-GAGU- :||| |: :|| :|||| |||| UGCUGGGAAUGGGCUGGGUGCUGGCUACUCUCAA Pstpip1 mmu-miR-103 94 132 AGUAUCGGGA---CAUG-------------UUACGAC-GA ||||| ||:| ::||||| || ---AAGCCCGGUGGUGCUGGGAAUGGGCUGGGUGCUGGCUA Pstpip1 mmu-miR-107 94 132 ACUAUCGGGA---CAUG-------------UUACGAC-GA ||||| ||:| ::||||| || ---AAGCCCGGUGGUGCUGGGAAUGGGCUGGGUGCUGGCUA Pstpip1 mmu-miR-125a 78 114 -GUGUCCAA---UU--------UC-CCAGAGUCCCU- |||:|| || :| ||| | |||| UCACGGGGCCAGAACCAAGCCCGGUGGUG-CUGGGAA Pstpip1 mmu-miR-125b 63 87 -AGUGUUCAAUCCCAGAGU-CCCU- |||| || |||| |||: AUCACCGCCCA-GGCCUCACGGGGC Pstpip1 mmu-miR-129-3p 103 128 -UACGAAAA--ACCCCAUUCC-CGAA :|||| |||| :|| ||| GGUGCUGGGAAUGGGCU-GGGUGCUG Pstpip1 mmu-miR-132 34 57 GCUGGUAC-CGACAUCUGACAAU |||::|| | | :||||||| UGACUGUGAGGUCAGGACUGUUU Pstpip1 mmu-miR-140* 77 108 -AG-GCACCAAGA-------UGGGACACCAU- || || || :||| |||||: CUCACG-GGGCCAGAACCAAGCCCGGUGGUGC Pstpip1 mmu-miR-145 99 124 UUCC-CUAAGGACCCUU--UUGACCUG || |:| ||||||| ::||||: -CGGUGGUG-CUGGGAAUGGGCUGGGU Pstpip1 mmu-miR-149 72 92 CCUCACUUCU--GUGCCUCGGUCU- |:| |||||:|||||| -----CAGGCCUCACGGGGCCAGAA Pstpip1 mmu-miR-150 98 126 -GUGACCAUGUU-----CCCAACCCUCU |: ||||:| ||| |||| | CCGGUGGUGCUGGGAAUGGGCUGGGUGC Pstpip1 mmu-miR-15a 92 111 GUGUUUGGUAAUACACGACGAU- |||:|| ||| ||||: -CCAAGCCCG---GUGGUGCUGG Pstpip1 mmu-miR-15b 100 133 ACAUUUGG-----UACUA----CACGAC-GAU- ||:: | |||: |||||| ||| GGUGGUGCUGGGAAUGGGCUGGGUGCUGGCUAC Pstpip1 mmu-miR-16 105 133 GCGG---UUAUAA-AUGCACGAC-GAU- ||: |||: |: |||||| ||| UGCUGGGAAUGGGCUGGGUGCUGGCUAC Pstpip1 mmu-miR-181a* 102 125 -CCAUGUUAGUUGCCAGCUACCA- |||:| : ||:|| ||| UGGUGCUGGGAAUGGGCUG-GGUG Pstpip1 mmu-miR-185 47 65 -CUUGACGGAAAGAGAGGU- |:||||: ||||:|||| AGGACUGU--UUCUUUCCAU Pstpip1 mmu-miR-202 55 81 -AGAAGGGUAC--GCGAUA-UGGAGA ||||:|||| ||| :|||| UUCUUUCCAUCACCGCCCAGGCCUCA Pstpip1 mmu-miR-212 29 57 CCGGCACUGAC-CU------CUGACAAU ||| |||||| || ||||||| CGCCCUGACUGUGAGGUCAGGACUGUUU Pstpip1 mmu-miR-298 1 34 CC-UUCU---UGUCGGGA------GGAGACGG- || |||: :|||:|: |||| ||| GGAAAGGCUAGCAGUCUCCACAUACCUCCGCCC Pstpip1 mmu-miR-29a 89 111 -UUGGCUAAAGUCUACCACGAU- |||| |:|||||||: GAACCAAGCCC-GGUGGUGCUGG Pstpip1 mmu-miR-29b 105 129 UUGUGACUAAAGUUUA--CCACGAU- :|||: ||||||: --UGCUGGGAAUGGGCUGGGUGCUGG Pstpip1 mmu-miR-29c 84 111 -UGG-CUAAAGUU-----UACCACGAU- :|| || ||| :|||||||: GGCCAGAAC-CAAGCCCGGUGGUGCUGG Pstpip1 mmu-miR-324-3p 97 126 -GGUCGUCGUGGAC----CCCG--UCACC ||:|::|::|: |||| :||| CCCGGUGGUGCUGGGAAUGGGCUGGGUGC Pstpip1 mmu-miR-324-5p 90 127 GUGGUUACGGG--------------AUCC--CCUACGC ||||| |||| |:|| ||:||| AACCAA-GCCCGGUGGUGCUGGGAAUGGGCUGGGUGCU Pstpip1 mmu-miR-326 101 130 UGACC----UCCUU-CCCGGGUCU---CC- ||| :|||| ||||: :| || -GUGGUGCUGGGAAUGGGCUGGGUGCUGGC Pstpip1 mmu-miR-329 108 129 UUUUUCCAA--UCGACCCAC-ACAA :|| :|||||||| || ---UGGGAAUGGGCUGGGUGCUGG- Pstpip1 mmu-miR-338 86 113 AGUU---GUUUUAGUGACUACGACCU- ||: |||: |: ||:||||||: CCAGAACCAAGCCCGGUGGUGCUGGGA Pstpip1 mmu-miR-339 82 114 ACUCGA---------GGACCUCC-UGUCCCU- |:|| || || || :| |||| GGGGCCAGAACCAAGCCCGGUGGUGCUGGGAA Pstpip1 mmu-miR-346 71 92 UCUCCGUCCGUGAG---CCC-GUCUGU ||||| ||| ||| |||| ----CCAGGC-CUCACGGGGCCAGAA- Pstpip1 mmu-miR-351 71 114 -GUCC-GAGUUUCCCGA----------GGA------GUCCCU |||| |||| :|||| || | |||| CCAGGCCUCACGGGGCCAGAACCAAGCCCGGUGGUGCUGGGAA Pstpip1 mmu-miR-424 85 111 AGGUUUUGUACUUA---ACGACGAC- |||:||| || ||||| GCCAGAACCAAGCCCGGUGGUGCUGG Pstpip1 mmu-miR-470 77 98 -AGUGGUCACGGUCA-GGUUCUU |||| :| ||||| ||||| CUCACGGG-GCCAGAACCAAGC- Pstpip1 mmu-miR-483 92 126 UGUUC---------UG-CCCUC-CCCUCCUCACU |||| :| |||| ||| |:||| CCAAGCCCGGUGGUGCUGGGAAUGGGCUGGGUGC Pstpip1 mmu-miR-485-5p 61 81 CUUAAGUAGUGCCGG--UCGGAGA |||||| ||| :||||| ----CCAUCACCGCCCAGGCCUCA Pstpip1 mmu-miR-486 80 114 GAGCCCCG--------UCGA---GUCAUG-UCCU- |||||| ||| ::||:| :||| -ACGGGGCCAGAACCAAGCCCGGUGGUGCUGGGAA Pstpip1 mmu-miR-491 1 23 GGAGUACCUUCCCA------AGGGGUGA |||| || ||:|||| ------GGAAAGGCUAGCAGUCUCCACA Pstpip1 mmu-miR-497 92 122 AUGUUUGGUGUCA-CACGA--------CGAC- |||:|| |:|| ||||| |||| -CCAAGCC-CGGUGGUGCUGGGAAUGGGCUGG Pstpip1 mmu-miR-500 88 109 GACUUGGGAACGGGU--CCACGUA ||||| ||||: ||||| -AGAACCAA-GCCCGGUGGUGCU- Pstpip1 mmu-miR-501* 86 109 -GUUUAGGAACGGGC--CCACGUAA ||:| || ||||| ||||| CCAGAACCAAGCCCGGUGGUGCU-- Pstpip1 mmu-miR-547 76 98 AGUGAGUUUCUA---CAUGGUUC- |||| :|: | |||||| --CCUCACGGGGCCAGAACCAAGC Pstpip1 mmu-miR-551b 105 125 GUGACUUUGGUUCAUACCCAGC :|||::| :| ||||| UGCUGGGAAU-GGGCUGGGUG- Pstpip1 mmu-miR-615 81 114 UUCUCCC--UC------UGGGUC----CGAGCCU- :||| || :|||:| ||| ||| --CGGGGCCAGAACCAAGCCCGGUGGUGCUGGGAA Pstpip1 mmu-miR-652 84 110 ACGUGU-------UGGGAUCACCGCGGUAA || || :||| :||||:||: GGC-CAGAACCAAGCCC-GGUGGUGCUG-- Pstpip1 mmu-miR-666 73 104 -CCGAGAGUG--UCGACA------CGGGCGA- ||| ||||| :|| ||||| | AGGC-CUCACGGGGCCAGAACCAAGCCCGGUG Pstpip1 mmu-miR-667 113 148 GAACCCGACCCACCGUCC--------------ACAGU ||||||||||| | || |||| -AUGGGCUGGGUG-CUGGCUACUCUCAAUAAAUGUCU Pstpip1 mmu-miR-668 99 127 -CCAUCA---CCCGG-CUCGGCUCACUGU |||:|| ||| |:||:|:||| | CGGUGGUGCUGGGAAUGGGCUGGGUG-CU Pstpip1 mmu-miR-670 63 87 AAGUGGUGUA--UGUGAGU-CCCUA |||||:| :| |||| |||: AUCACCGCCCAGGC-CUCACGGGGC Pstpip1 mmu-miR-671 24 61 -GGAGGUCGGGGA---------GGUCC---CGAAGGA- ||||| ||||: :|||| |:|||:| ACCUCC-GCCCUGACUGUGAGGUCAGGACUGUUUCUUU Pstpip1 mmu-miR-673 76 114 -GAGGUUCCUGGUCU---------------CGACACUC ||| :||:||||| |||| || CCUCACGGGGCCAGAACCAAGCCCGGUGGUGCUGGGAA Pstpip1 mmu-miR-674* 101 129 AACAA-GACUCU------ACCCUCGACAC || |||:|| |||| |||| GUGGUGCUGGGAAUGGGCUGGGUGCUGG- Pstpip1 mmu-miR-675-5p 35 71 -UGACAC-CCG----------GGAAAGGC-GUGGU- |||||| ||: :|||||| ||||: GACUGUGAGGUCAGGACUGUUUCUUUCCAUCACCGC Pstpip1 mmu-miR-678 24 46 -GGAGGUCAGGAAC-GUGGCUCUG ||||| || || | :|||: ACCUCCG--CCCUGACUGUGAGGU Pstpip1 mmu-miR-681 68 88 UCGACGGA--CGGUC-GCUCCGAC ||| ||| ||:||| ---CGCCCAGGCCUCACGGGGCC- Pstpip1 mmu-miR-689 95 114 CCUGGGGCGGCUCGCCCCUGC :||| |: | || |||| -AGCCCGGUGGUGCUGGGAA- Pstpip1 mmu-miR-691 26 52 AAAAGACGGAGA--GA------AGUCCUUA || ||| || || |||||| --CUCCGCC-CUGACUGUGAGGUCAGGAC- Pstpip1 mmu-miR-693-5p 108 132 -CUUUUGAAA-GCCUAC-ACCGAC |::||: :||:|| ||||| UGGGAAUGGGCUGGGUGCUGGCUA Pstpip1 mmu-miR-702 94 120 CUCG--CC-CCAUUUCCC--ACCCGU ||| || |||: ||| ||||| AAGCCCGGUGGUGCUGGGAAUGGGCU Pstpip1 mmu-miR-705 68 95 ACGGG--UGGGGUGGA--GGG--UGG- |||| :||:||| || ||| CGCCCAGGCCUCACGGGGCCAGAACCA Pstpip1 mmu-miR-706 39 62 AAAAAACUCU-GUCC---CAAAGAGA- ||||: |||| ||||||:| ----GUGAGGUCAGGACUGUUUCUUUC Pstpip1 mmu-miR-709 24 40 AGGAGGACGGAGACGGAGG ||||| ||| ||| || ACCUCC-GCC-CUGACUG- Pstpip1 mmu-miR-715 78 114 -GUGCGCCC--------------CCA-CACGUGCCUC |||| ||| ||| |||| ||| UCACG-GGGCCAGAACCAAGCCCGGUGGUGCUGGGAA Pstpip1 mmu-miR-718 88 124 GCUG----UGGGCCG-----------GCCCG-CCUUC || :|||||: :|||| ||: AGAACCAAGCCCGGUGGUGCUGGGAAUGGGCUGGGU- Pstpip1 mmu-miR-744 50 81 CGACAAU------------CGGGAUCGGGGCGU ||||| |||| :|||:| ACUGUUUCUUUCCAUCACCGCCCAGGCCUCA-- Pstpip1 mmu-miR-761 10 42 ACACAGUCAAAG-----------UGGGAC-GACG- | |||| || :||||| |||: --AG-CAGUCUCCACAUACCUCCGCCCUGACUGUG Pstpip1 mmu-miR-762 54 81 CGAGACAGGGC----CGGGGUCGGGG- :||| ||| |||| :|||:| UUUCUUUCCAUCACCGCCCAGGCCUCA Pstpip1 mmu-miR-764-3p 10 31 -UGUCAACGGUGAUACCGGAGGA :|||| |||| ||||| AGCAGUCUCCACAUA--CCUCCG Pstpip1 mmu-miR-770-3p 60 84 -GGUCGAGGUGCAGUCCGG-GUGC- ||| | ||:| |||||| |||| UCCAUCACCGCC-CAGGCCUCACGG Pstpip1 mmu-miR-132 49 56 --------------------GCUGGUACCGACA--UCUGACAAU :|||::|| || :||||||| GUCUCCACAUACCUCCGCCCUGACUGUGAG-GUCAGGACUGUUU Pstpip1 mmu-miR-212 49 56 C---------------CGGCACUGAC-C------UCUGACAAU ||| |||||| | :||||||| GUCUCCACAUACCUCCGCCCUGACUGUGAGGUCAGGACUGUUU Pstpip1 mmu-miR-27a 36 43 CGCCUUGAAUCGG--------------------------UGACACUU |||| :||: |||||||: --GGAAA--GGCUAGCAGUCUCCACAUACCUCCGCCCUGACUGUGAGG Pstpip1 mmu-miR-27b 36 43 ----------CGUCUU---------GAAUCGG---UGACACUU |||| || ||| |||||||: GGAAAGGCUAGCAGUCUCCACAUACCUCCGCCCUGACUGUGAGG Pstpip1 mmu-miR-29a 102 109 -----------------------UUGGCUAAAGUCUACCACGAU |||| |:|||||||: CCGCCCAGGCCUCACGGGGCCAGAACCAAGCCC-GGUGGUGCUGG Pstpip1 mmu-miR-29b 102 109 UU----------GUGACUAAAGU-----------UUACCACGAU ||| |: || ::|||||||: CCGCCCAGGCCUCACGGGGC-CAGAACCAAGCCCGGUGGUGCUGG Pstpip1 mmu-miR-29c 102 109 ------------------------UGGCUAAAGUUUACCACGAU ||| | :|||||||: CCGCCCAGGCCUCACGGGGCCAGAACCAAGC-CCGGUGGUGCUGG Pstpip1 mmu-miR-378 44 51 U-------------------GUGUC-CUGG-ACCUCAGUCCUC |:| |||: || ||||||| UAGCAGUCUCCACAUACCUCCGCCCUGACUGUGAGGUCAGGAC Pstpip1 mmu-let-7e 7 29 uGAUAUGUUGGAG--G-AUGGAGu ||| :||::||| | |||||| gCTA-GCAGTCTCCACATACCTCc Pstpip1 mmu-let-7f 7 29 uGAUAUGUUAGA--UG-AUGGAGu ||| :||:||| || |||||| gCTA-GCAGTCTCCACATACCTCc Pstpip1 mmu-let-7g 117 137 uGACAUGUUUGA-UGAUG-GAGU ||| :: :|| :|||| |||| gCTGGGT--GCTGGCTACTCTCA Pstpip1 mmu-miR-103 92 111 aGUAUCGGGACAUGUUACGACga || ||||| || ::||||| cCA-AGCCCGGT--GGTGCTGgg Pstpip1 mmu-miR-107 91 111 acuaUCGGGACAUGUUACGACga ||||| || ::||||| accaAGCCCGGT--GGTGCTGgg Pstpip1 mmu-miR-125a 65 85 GUGUCCAAUUUCCCAGAGU-CCCu ||| | | || |||| ||| CACCGCCCA---GGCCTCACGGGg Pstpip1 mmu-miR-125b 64 85 AGUGUUCAAUCCCAGAGU-CCCu |||| : | || |||| ||| TCACCGCCCA-GGCCTCACGGGg Pstpip1 mmu-miR-129-3p 104 120 uACGAAAAACCCCAUUCCCGAa |||| ||| | ||||| gTGCT-----GGGAATGGGCTg Pstpip1 mmu-miR-132 29 56 GCUGGUACCGACA-------UCUGACAAu || || || |||| :||||||| CG-CCCTGACTGTGAGGTCAGGACTGTTt Pstpip1 mmu-miR-140* 85 106 aggcaccaagauGGGACACCAu ||| ||||| gccagaaccaagCCCGGTGGTg Pstpip1 mmu-miR-145 98 123 uuCCCUAAGGACCCUU--UUGACCug || : | ||||||| ::|||| ccGGTGGTGCTGGGAATGGGCTGGgt Pstpip1 mmu-miR-149 69 90 ccucacuucuGUGCCUCGGUCU |||||:|||||| gcccaggcctCACGGGGCCAGA Pstpip1 mmu-miR-150 105 125 guGACCAUGUUCCCAACCCUCu |||| | | ||| |||| | tgCTGGGA-ATGGGCTGGGTGc Pstpip1 mmu-miR-15a 91 109 guGUUUGGUAAUACACGACGAu |||:|| ||| |||| acCAAGCC---CGGTGGTGCTg Pstpip1 mmu-miR-15b 86 109 acauUUGGUAC--UACACGACGAu ||||| | ||| |||| ccagAACCAAGCCCGGTGGTGCTg Pstpip1 mmu-miR-16 109 131 gcgguuauaaAUGCACGA-CGAU |: ||||| |||| gggaatgggcTGGGTGCTGGCTA Pstpip1 mmu-miR-181a* 82 105 CCAUG---UUAGUUGCCAGCUACCA || :| || ||| | ||:|||| GGGGCCAGAACCAA-GCCCGGTGGT Pstpip1 mmu-miR-185 48 63 CUUGACGGAAAGAGAGGU |:|||| |||||:|||| GGACTG--TTTCTTTCCA Pstpip1 mmu-miR-199a* 115 136 uugguuaCACGUCUGAUGACAu |||| |:||||| | gggctggGTGCTGGCTACTCTc Pstpip1 mmu-miR-202 56 80 AGAAGGGUA--CGC-GAUAUGGAGa ||||:|||| || | | :|||| TCTTTCCATCACCGCCCAGGCCTCa Pstpip1 mmu-miR-212 29 56 cCGGCACUGAC-CU------CUGACAAu ||| |||||| || ||||||| cGCCCTGACTGTGAGGTCAGGACTGTTt Pstpip1 mmu-miR-27a 20 43 cgccUUGAAUCGG---UGACACUu | || ||| ||||||| acatACCTCCGCCCTGACTGTGAg Pstpip1 mmu-miR-27b 20 43 cGUCUUGAAUCGG---UGACACUu || | || ||| ||||||| aCATACCTCCGCCCTGACTGTGAg Pstpip1 mmu-miR-27b 86 113 cGUCUUGAAUCGG-------UGACACUU |||||| |||| :||| ||| cCAGAACCAAGCCCGGTGGTGCTGGGAA Pstpip1 mmu-miR-29a 90 109 UUGGCUAAAGUCUACCACGAu |||| | | |:||||||| AACC-AAGCCCGGTGGTGCTg Pstpip1 mmu-miR-29b 87 109 uugugacuaaaGUUUACCACGAu | ::||||||| cagaaccaagcCCGGTGGTGCTg Pstpip1 mmu-miR-29c 91 109 UGGCUAAAGUUUACCACGAu ||| | | ::||||||| ACC-AAGCCCGGTGGTGCTg Pstpip1 mmu-miR-324-3p 86 107 GGUCGUCGU--GGACCCCGUCACc |||| | || || ||::||| CCAGAACCAAGCC--CGGTGGTGc Pstpip1 mmu-miR-326 80 104 UGACCUC---CUU--CCCGGGUCUCC || ||:| ||| ||||:| || AC-GGGGCCAGAACCAAGCCCGGTGG Pstpip1 mmu-miR-329 110 129 uuUUUCCAAUCGACCCAC-ACaa || || |||||||| || ggAATGG---GCTGGGTGCTGgc Pstpip1 mmu-miR-338 89 111 agUUGUUUUAGUGACUACGACCu | |||: |: ||:|||||| gaACCAAGCCCGGTGGTGCTGGg Pstpip1 mmu-miR-339 100 123 aCUCGAGGACCU---CCUGUCCCu | | | ||||: ||:| ||| gGTGGTGCTGGGAATGGGCTGGGt Pstpip1 mmu-miR-346 67 92 ucuccGUCCGUGAG---CCC-GUCUgu ||||| ||| ||| |||| ccgccCAGGC-CTCACGGGGCCAGAac Pstpip1 mmu-miR-351 66 85 gucCGAGUUUCCCGAGGAGU-CCCu || || || ||||| ||| accGCCCA---GG--CCTCACGGGg Pstpip1 mmu-miR-378 29 51 ugugucCUGG-ACCUCAGUCCUc |||: || :||||||| cgccctGACTGTGAGGTCAGGAc Pstpip1 mmu-miR-470 78 98 AGUGGUCACGGUC-AGGUUCuu ||| |:| ||||| ||||| TCA-CGGGGCCAGAACCAAGcc Pstpip1 mmu-miR-485-5p 57 80 cuuAAGUAGU-GCCGGU-CGGAGa | ||||| || ||| ||||| cttTCCATCACCGCCCAGGCCTCa Pstpip1 mmu-miR-486 79 111 GAGCCCCG--------UCGAG---UCAUGUCCu | |||||| ||| | :||:| || CACGGGGCCAGAACCAAGCCCGGTGGTGCTGGg Pstpip1 mmu-miR-497 91 112 auGUUUGGUGUCA-CACGACgac |||:|| |:|| |||||| acCAAGCC-CGGTGGTGCTGgga Pstpip1 mmu-miR-500 87 109 GACUUGGGAACGGG--UCCACGua | ||| || |||| ||||| CAGAA-CCAAGCCCGGTGGTGCtg Pstpip1 mmu-miR-501* 87 110 GUUUAGGAACGGGC--CCACGuaa ||:| || ||||| ||||| CAGAACCAAGCCCGGTGGTGCtgg Pstpip1 mmu-miR-547 74 96 aguGAGUUUCU---ACAUGGUUC |||| :|: | |||||| ggcCTCACGGGGCCAGAACCAAG Pstpip1 mmu-miR-551b 99 120 GUGACUUUGGUUCAUACCCagc |: ||: :|:::| ||||| CGGTGGTGCTGGGAATGGGctg Pstpip1 mmu-miR-615 79 102 uUCUCCC--UCUGGGUCCGAGCCu | :||| ||| ||| || ||| cACGGGGCCAGAACCAAGCCCGGt Pstpip1 mmu-miR-615 105 124 uucuCCCUCUGGGUCCGAGCCU- |||| | ::|||| || tgctGGGA-A--TGGGCTGGGTG Pstpip1 mmu-miR-652 68 90 aCGUGUUGGGAUCACCGCGGUaa || ||: ||| || |||| cGCCCAGGCCTCACGGGGCCAga Pstpip1 mmu-miR-666 74 102 CCGAGAGUGUC---GAC-----ACGGGCga ||| |||||:| | | ||||| GGC-CTCACGGGGCCAGAACCAAGCCCGgt Pstpip1 mmu-miR-667 100 127 gaACC-CGACCC--ACC--GUCCACagu ||| |||||| ||| ::|||| ggTGGTGCTGGGAATGGGCTGGGTGctg Pstpip1 mmu-miR-668 103 127 CCAUCACCC-GGCUCGGCUCACugu |||: |||| :|:||:|:||| GGTGCTGGGAATGGGCTGGGTGctg Pstpip1 mmu-miR-671 58 81 ggAGGUCGGGGAGGUCCCGAAGga |||| | || || ||| || ttTCCATCACCGCCCAGGCCTCac Pstpip1 mmu-miR-673 90 113 gaGGUUCCUG--GUCUCGACACUc ||||| | ::| |||| || aaCCAAGCCCGGTGGTGCTGGGAa Pstpip1 mmu-miR-674* 102 122 AACAAGACUCUACCCUCGACac | || |||:|| |:|||| TGGTGCTGGGA-ATGGGCTGgg Pstpip1 mmu-miR-675-5p 36 73 UGACAC-CCGG----------GAAA------GGCGUGGU |||||| ||:| |||| |||| ||| ACTGTGAGGTCAGGACTGTTTCTTTCCATCACCGC-CCA Pstpip1 mmu-miR-678 25 43 GGAGGUCAGGAACGUGGCUCUg ||||| | || || ||:| || CCTCC-G-CCCTG-ACTGTGAg Pstpip1 mmu-miR-681 71 88 ucgaCGGACGGUCGCUCCGac |||| || ||:||| ccagGCCT--CA-CGGGGCca Pstpip1 mmu-miR-689 94 114 ccuGGGGCGGCUCGCCCCUgc ||| |: | || |||| aagCCCGGTGGTGCTGGGAat Pstpip1 mmu-miR-691 24 52 aaaAGACGGAGA--GA------AGUCCUua || ||| || || |||||| accTCCGCC-CTGACTGTGAGGTCAGGAct Pstpip1 mmu-miR-693-5p 109 131 CUUUUGAAAG-CCUAC-ACCGAc |::||: | ||:|| ||||| GGGAATGGGCTGGGTGCTGGCTa Pstpip1 mmu-miR-702 96 119 cucGCC-CCAUUUCCC--ACCCGu ||| |||: ||| ||||| gccCGGTGGTGCTGGGAATGGGCt Pstpip1 mmu-miR-705 55 75 ACGGGUGG-GGUGGAGGGUgg | |:: || :|||| |||| TTCTTTCCATCACCGCCCAgg Pstpip1 mmu-miR-706 35 60 aaaAAACUCU-GUCC---CAAAGAGA | ||||: |||| ||||||:| gacTGTGAGGTCAGGACTGTTTCTTT Pstpip1 mmu-miR-709 24 40 aGGAGGACGGAGACGGAgg ||||| ||| ||| || aCCTCC-GCC-CTGACTgt Pstpip1 mmu-miR-715 68 85 GUGCGCCCCCACACGUGCCUC |:| | || | |||||:| CGCCCAGGCCT---CACGGGG Pstpip1 mmu-miR-744 62 82 cgacaauCGGGAUCGGGGCGu |||| :|||:| | catcaccGCCCAGGCCTCACg Pstpip1 mmu-miR-761 18 40 acacagucaAAGUGGGAC-GACg | |:||||| ||| ccacataccTCCGCCCTGACTGt Pstpip1 mmu-miR-762 69 100 CGAGACAGG---G--CCGG----GG-UCGGGg || | | || | |||| || ||||| GCCCAGGCCTCACGGGGCCAGAACCAAGCCCg Pstpip1 mmu-miR-764-3p 11 30 uGUCAACGGUG-AUACCGGAGGa |||| |||| || ||||| gCAGTCTCCACATA---CCTCCg Pstpip1 mmu-miR-770-3p 61 82 GGUCGAGGUGCAGUCCGG-GUGC ||| | ||:| |||||| |||| CCATCACCGC-CCAGGCCTCACG

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Pstpip1 RAID00297475 mmu-miR-212-3p miRNA MIMAT0000659 Pstpip1 mRNA 19200 Prediction 0.1828 Pstpip1 RAID01296779 mmu-let-7c-5p miRNA MIMAT0000523 Pstpip1 mRNA 19200 Prediction 0.1828 Pstpip1 RAID02316182 mmu-let-7b-5p miRNA MIMAT0000522 Pstpip1 mRNA 19200 Prediction 0.1828 Pstpip1 RAID02783245 mmu-let-7d-5p miRNA MIMAT0000383 Pstpip1 mRNA 19200 Prediction 0.1828 Pstpip1 RAID02806048 mmu-miR-6913-5p miRNA MIMAT0027726 Pstpip1 mRNA 19200 Prediction 0.1828 Pstpip1 RAID02950853 mmu-let-7f-5p miRNA MIMAT0000525 Pstpip1 mRNA 19200 Prediction 0.1828 Pstpip1 RAID03051434 mmu-miR-202-3p miRNA MIMAT0000235 Pstpip1 mRNA 19200 Prediction 0.1828 Pstpip1 RAID03077577 mmu-miR-132-3p miRNA MIMAT0000144 Pstpip1 mRNA 19200 Prediction 0.1828 Pstpip1 RAID03302331 mmu-let-7a-5p miRNA MIMAT0000521 Pstpip1 mRNA 19200 Prediction 0.1828