DNA & RNA Element - circBase circRNA ID Chrom Start End Strand mmu_circ_0001798 chr9 66387868 66414710 - mmu_circ_0001799 chr9 66410360 66414710 -

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT015779 mmu-miR-124-3p Mus musculus Usp3 235441 Mus musculus Microarray Functional MTI (Weak) 18619591 MIRT009965 mmu-miR-17-5p Mus musculus Usp3 235441 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT007802 mmu-miR-301b-3p Mus musculus Usp3 235441 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004529 mmu-miR-125b* 235441 Usp3 uccaggguucuUGGACUGAAca :::|||||| aacuuaguucuGUUUGACUUuu 3 12 249 270 [mm9:9:66365950-66365971:-] 0.6656 123 0 -10.89 -0.1299 MIMAT0000137 mmu-miR-126-5p 235441 Usp3 gcgcauGGUUUUCAUUAUUAc ::|: |||||||| gcugcuUUAGUUGUAAUAAUu 2 16 205 225 [mm9:9:66365995-66366015:-] 0.6656 147 7 -10.08 -1.0420 MIMAT0003473 mmu-miR-133a* 235441 Usp3 uaAACCAAGGUAAAAUGGUCg ||| | :::|| |||||| uuUUGUUGUUGUUCUACCAGa 2 20 160 180 [mm9:9:66366040-66366060:-] 0.6256 135 6 -11.51 -0.1923 MIMAT0000154 mmu-miR-142-5p 235441 Usp3 ucAUCACGA-AAGAUGAAAUAc |||| || ||: ||||| | cuUAGUUCUGUUUGACUUUUUa 2 20 251 272 [mm9:9:66365948-66365969:-] 0.6656 134 0 -9.87 -0.1006 MIMAT0004539 mmu-miR-183* 235441 Usp3 aauACCGG-GAAGCC------AUUAAGUg ||||: |||: | ||||||| gauUGGCUGCUUUAGUUGUAAUAAUUCAa 2 20 200 228 [mm9:9:66365992-66366020:-] 0.6656 141 7 -12.50 -1.3227 MIMAT0004572 mmu-miR-290-3p 235441 Usp3 cccgAAUUUUGA-UCCGCCGUGAAa | ||| :| || |||||| agagUCAAAUUUCAGUAUGCACUUu 2 21 68 92 [mm9:9:66366128-66366152:-] 0.7367 123 6 -8.67 -0.2506 MIMAT0000370 mmu-miR-292-3p 235441 Usp3 ugUGAGUUU-UGGACCGCCGUGAAa | ||||| :| | |||||| agAGUCAAAUUUCAGUAUGCACUUu 2 23 68 92 [mm9:9:66366128-66366152:-] 0.7367 125 6 -11.84 -0.2551 MIMAT0004573 mmu-miR-293* 235441 Usp3 guUUUACAGUGUGUCAAACUca :|| | :: | |||||| caGAACUUAGUUCUGUUUGAcu 3 21 246 267 [mm9:9:66365953-66365974:-] 0.6656 128 0 -8.10 -0.2535 MIMAT0004617 mmu-miR-148a* 235441 Usp3 ucaGCCUCACAGAGUCUUGAAa :| ||| || |||||||| auaUGUAGUUUC-CAGAACUUa 2 20 234 254 [mm9:9:66365966-66365986:-] 0.6656 161 7 -15.98 -1.1162 MIMAT0004625 mmu-miR-16* 235441 Usp3 agucgucguGUCAGUUAUGAcc || | |||||| uccauuuucCA-UAAAUACUug 3 14 42 62 [mm9:9:66366158-66366178:-] 0.7367 123 0 -6.93 -0.1598 MIMAT0004636 mmu-miR-93* 235441 Usp3 gcccuucacgaUCGAGUCGUCa | |||||||| ucuaccagaaaACCUCAGCAGg 2 12 172 193 [mm9:9:66366027-66366048:-] 0.6456 147 7 -14.01 -0.6065 MIMAT0000551 mmu-miR-323-3p 235441 Usp3 ucuccagcuggcacAUUACAc |||||| uugacuuuuuauauUAAUGUu 2 8 262 282 [mm9:9:66365938-66365958:-] 0.6656 120 6 -5.52 -0.1855 MIMAT0004664 mmu-miR-214* 235441 Usp3 cgugucGUUCACAUCU-GUCCGu |:| || ||| ||||| uccuucCGACUGCAGACCAGGCc 2 17 440 462 [mm9:9:66365758-66365780:-] 0.5442 124 0 -13.61 -0.1551 MIMAT0000745 mmu-miR-380-3p 235441 Usp3 uucUACACCUGGUAUGA-UGUAu || || |:||||| |||| ugcAUUUGCUCUAUACUCACAUg 2 20 306 328 [mm9:9:66365892-66365914:-] 0.6049 131 0 -12.81 -0.5243 MIMAT0001090 mmu-miR-409-3p 235441 Usp3 uccccAAGUGGCUCGUUGUAAg | |||||: ||||||| ucaacUACACCGGACAACAUUu 2 18 21 42 [mm9:9:66366178-66366199:-] 0.7072 165 7 -21.32 -0.9292 MIMAT0002107 mmu-miR-466a-3p 235441 Usp3 agaauacacacgcACAUACAUau | |||||| auaauucaauuuuUAUAUGUAgu 3 11 220 242 [mm9:9:66365978-66366000:-] 0.6656 122 0 -3.56 -0.2097 MIMAT0003409 mmu-miR-467a 235441 Usp3 gcGUAUAUGUACGUCCGUGAAu || || : |:| |||||| guCAAAUUUCAGUAUGCACUUu 2 21 71 92 [mm9:9:66366128-66366149:-] 0.7367 128 6 -11.20 -0.2484 MIMAT0002110 mmu-miR-469 235441 Usp3 ccuGUGGUUCU-AGUUACUUUCUCCGu ||: || | |::|| ||||| | uucCAUAAAUACUUGAUCCAAGAGUCa 2 24 48 74 [mm9:9:66366146-66366172:-] 0.7367 130 0 -12.55 -0.1206 MIMAT0002111 mmu-miR-470 235441 Usp3 ugaGUGGUCACGGUC-AGGUUCUu ||: | | |: | ||||||| uucCAUAAAUACUUGAUCCAAGAg 2 21 48 71 [mm9:9:66366149-66366172:-] 0.7367 151 7 -12.87 -1.1527 MIMAT0004790 mmu-miR-503* 235441 Usp3 gguccgucaccuuugUUAUGAg |||||| uuuccauuuuccauaAAUACUu 2 8 40 61 [mm9:9:66366159-66366180:-] 0.7367 120 6 -6.57 -0.1154 MIMAT0003190 mmu-miR-291b-3p 235441 Usp3 ugUUUGUUUUA---CCUACGUGAAa |: |||| | | |||||||| agAGUCAAAUUUCAGUAUGCACUUu 2 21 68 92 [mm9:9:66366128-66366152:-] 0.7367 155 7 -13.59 -1.2849 MIMAT0003732 mmu-miR-668 235441 Usp3 ccAUC-ACCCGGCUCGGC-UCACUGu ||| | ||:| ||: | |||||| uuUAGUUUGGUC-AGUGGUAGUGACu 2 23 111 135 [mm9:9:66366085-66366109:-] 0.7023 127 6 -20.17 -0.4717 MIMAT0003891 mmu-miR-770-3p 235441 Usp3 ggucgAGGUGCAG--UCCGGGUGc | || ||| ||||||| gugugUGCAGGUCUGUGGCCCACc 2 18 391 414 [mm9:9:66365806-66365829:-] 0.5442 148 7 -21.20 -0.2247 MIMAT0003894 mmu-miR-764-5p 235441 Usp3 uccuccUGUACACUCGUGg ||| ||||||| uacccaACA--UGAGCACc 2 14 136 152 [mm9:9:66366068-66366084:-] 0.6678 142 7 -15.16 -0.8523 MIMAT0003459 mmu-miR-682 235441 Usp3 guCUGAAGUGACACUGACGUc || ||| :| ||||||| agGAAUUCCUUCCGACUGCAg 2 20 434 454 [mm9:9:66365766-66365786:-] 0.5442 159 7 -19.60 -0.1164 MIMAT0003470 mmu-miR-691 235441 Usp3 aaaaGACGGAGAGAAGUCCUUa | |: || ||||||| uucaCAGUGACUGCUCAGGAAu 2 19 418 439 [mm9:9:66365781-66365802:-] 0.5442 146 7 -15.05 -0.1588 MIMAT0003474 mmu-miR-694 235441 Usp3 gaaguccGUUGUAAAAGUc :||::|||||| uuuauauUAAUGUUUUCAg 2 13 269 287 [mm9:9:66365933-66365951:-] 0.6656 136 6 -10.25 -0.2074 MIMAT0003474 mmu-miR-694 235441 Usp3 gaAGUCCGUUGU-AAAAGUc |||| :|| |||||| uuUCAGUAUGCACUUUUCAa 2 18 77 96 [mm9:9:66366124-66366143:-] 0.7367 121 6 -11.08 -1.2247 MIMAT0005448 mmu-miR-467b 235441 Usp3 guauAUGUACGUCCGUGAAug | || |:| |||||| aaauUUCA-GUAUGCACUUuu 3 18 74 93 [mm9:9:66366127-66366146:-] 0.7367 131 0 -10.23 -0.2174 MIMAT0003479 mmu-miR-669c 235441 Usp3 ugugUGUAGGUGUGUGUUGAUa |||| :|| |||||| cccaACAUGAGCA-CCAACUAa 2 19 138 158 [mm9:9:66366062-66366082:-] 0.6678 124 6 -16.13 -0.1819 MIMAT0004827 mmu-miR-297b-3p 235441 Usp3 auacccaUACACACAUACAUau || | | |||||| uaauucaAUUUUUAUAUGUAgu 3 16 221 242 [mm9:9:66365978-66365999:-] 0.6656 131 0 -3.59 -0.2078 MIMAT0003485 mmu-miR-455* 235441 Usp3 gcuaCAUCAG-GUUUCCGUGUAu || || | :|||||||| uucaGUUCUCACCGAGGCACAUu 2 19 283 305 [mm9:9:66365915-66365937:-] 0.6656 153 7 -17.40 -0.9361 MIMAT0004843 mmu-miR-879* 235441 Usp3 ggcuuucgaacuucGGUAUUcg |||||| aacauuuccauuuuCCAUAAau 3 9 36 57 [mm9:9:66366163-66366184:-] 0.7072 120 0 -5.12 -0.1471 MIMAT0004848 mmu-miR-883a-5p 235441 Usp3 cauugacgaugaagaGAGUCGu |||||| guucuaccagaaaacCUCAGCa 2 8 170 191 [mm9:9:66366029-66366050:-] 0.6456 120 6 -13.56 -0.1134 MIMAT0004856 mmu-miR-105 235441 Usp3 ugguGUUCGUAGAC-U-CGUGAAcc ||| : || | | |||||| gaguCAAAUUUCAGUAUGCACUUuu 3 20 69 93 [mm9:9:66366127-66366151:-] 0.7367 129 0 -8.67 -0.2194 MIMAT0004864 mmu-miR-297a* 235441 Usp3 auacccaUACACACAUACAUau || | | |||||| uaauucaAUUUUUAUAUGUAgu 3 16 221 242 [mm9:9:66365978-66365999:-] 0.6656 131 0 -3.59 -0.2078 MIMAT0004866 mmu-miR-297c* 235441 Usp3 auacccaUACACACAUACAUau || | | |||||| uaauucaAUUUUUAUAUGUAgu 3 16 221 242 [mm9:9:66365978-66365999:-] 0.6656 131 0 -3.59 -0.2078 MIMAT0004876 mmu-miR-466b-3p 235441 Usp3 agaauacacacgcACAUACAUau | |||||| auaauucaauuuuUAUAUGUAgu 3 11 220 242 [mm9:9:66365978-66366000:-] 0.6656 122 0 -3.56 -0.2097 MIMAT0005453 mmu-miR-466b-3-3p 235441 Usp3 agaauacacacgcACAUACAUaa | |||||| auaauucaauuuuUAUAUGUAgu 3 11 220 242 [mm9:9:66365978-66366000:-] 0.6656 122 0 -3.56 -0.2097 MIMAT0004878 mmu-miR-466c-3p 235441 Usp3 agaauacacacgcACAUACAUau | |||||| auaauucaauuuuUAUAUGUAgu 3 11 220 242 [mm9:9:66365978-66366000:-] 0.6656 122 0 -3.56 -0.2097 MIMAT0004880 mmu-miR-466e-3p 235441 Usp3 agaauacacacgcACAUACAUau | |||||| auaauucaauuuuUAUAUGUAgu 3 11 220 242 [mm9:9:66365978-66366000:-] 0.6656 122 0 -3.56 -0.2097 MIMAT0004885 mmu-miR-467c 235441 Usp3 guGUAUAUGUACGUGCGUGAAu || || : |:|:|||||| guCAAAUUUCAGUAUGCACUUu 2 21 71 92 [mm9:9:66366128-66366149:-] 0.7367 144 6 -16.24 -0.2484 MIMAT0004886 mmu-miR-467d 235441 Usp3 gcGUAUAUGUACGCGCGUGAAu || || : |: :|||||| guCAAAUUUCAGUAUGCACUUu 2 21 71 92 [mm9:9:66366128-66366149:-] 0.7367 136 6 -14.13 -0.2484 MIMAT0004931 mmu-miR-466d-3p 235441 Usp3 gauacacacgcACAUACAUau | |||||| aauucaauuuuUAUAUGUAgu 3 11 222 242 [mm9:9:66365978-66365998:-] 0.6656 122 0 -3.56 -0.2097 MIMAT0004935 mmu-miR-872* 235441 Usp3 uccuccGAU-GACGUUAUCAAGu :|| :||:|||| ||| gcugcuUUAGUUGUAAUAAUUCa 2 17 205 227 [mm9:9:66365993-66366015:-] 0.6656 127 0 -12.37 -0.1706 MIMAT0004935 mmu-miR-872* 235441 Usp3 uccuccgaugacguuAUCAAGu |||||| guaguuuccagaacuUAGUUCu 2 8 238 259 [mm9:9:66365961-66365982:-] 0.6656 120 6 -6.02 -0.1167 MIMAT0004938 mmu-miR-875-3p 235441 Usp3 guaucggAGUCAUAAAAGUCc |:| |:||||||| uuuuauaUUAAUGUUUUCAGu 2 15 268 288 [mm9:9:66365932-66365952:-] 0.6656 154 7 -8.99 -1.0487 MIMAT0005831 mmu-miR-669k 235441 Usp3 aacGUACGCACAUAUACGUau || : | :|||||| aguCAAAUUUCAGUAUGCAcu 3 19 70 90 [mm9:9:66366130-66366150:-] 0.7367 122 0 -5.92 -0.1619 MIMAT0005835 mmu-miR-1-2-as 235441 Usp3 acCUUACAUU-UCUUCAUACau ||:| || |||||| aaGAGUCAAAUUUCAGUAUGca 3 20 67 88 [mm9:9:66366132-66366153:-] 0.7367 122 0 -7.05 -0.2662 MIMAT0005838 mmu-miR-669j 235441 Usp3 acaaacguacacucAUAUACGu ||||||: aauaauucaauuuuUAUAUGUa 2 9 219 240 [mm9:9:66365980-66366001:-] 0.6656 124 0 -5.89 -0.3250 MIMAT0005840 mmu-miR-669i 235441 Usp3 caUACGUACACACAUAUACGu || || | | ||||||: uaAUUCA-AUUUUUAUAUGUa 2 20 221 240 [mm9:9:66365980-66365999:-] 0.6656 133 0 -5.89 -0.3250 MIMAT0005842 mmu-miR-669h-3p 235441 Usp3 acacGUACACACAUAUACGUau || | | :|||||| gaguCAAAUUUCAGUAUGCAcu 3 19 69 90 [mm9:9:66366130-66366151:-] 0.7367 126 0 -6.28 -0.1603 MIMAT0005854 mmu-miR-467g 235441 Usp3 uauauacACACACAUACAUau | | | |||||| aauucaaUUUUUAUAUGUAgu 3 15 222 242 [mm9:9:66365978-66365998:-] 0.6656 126 0 -5.41 -0.2059 MIMAT0007864 mmu-miR-1897-5p 235441 Usp3 gggggagaAAGAGGUAGGUUUc | ||: ||||||: uccauaaaUACUUGAUCCAAGa 2 15 49 70 [mm9:9:66366150-66366171:-] 0.7367 134 0 -14.14 -0.1766 MIMAT0007875 mmu-miR-1898 235441 Usp3 cuAGGGGACACUUG-GAACUGGa |:::| | ||: |||||:| caUUUUCCAUAAAUACUUGAUCc 2 21 44 66 [mm9:9:66366154-66366176:-] 0.7367 135 0 -12.85 -0.1201 MIMAT0007876 mmu-miR-1907 235441 Usp3 uggaggucuaggagaCGACGAg |||||| caggcauuuugauugGCUGCUu 2 8 190 211 [mm9:9:66366009-66366030:-] 0.6656 120 6 -13.98 -0.1719 MIMAT0009391 mmu-miR-1928 235441 Usp3 cucgaccguUACAUCGa ||||||: aauuuuuauAUGUAGUu 2 9 227 243 [mm9:9:66365977-66365993:-] 0.6656 124 0 -7.98 -0.1560 MIMAT0009399 mmu-miR-1935 235441 Usp3 ucucuaggcggucgGAGACGGa ||||||| ucagcauuaaauaaCUCUGCCa 2 9 496 517 [mm9:9:66365703-66365724:-] 0.5442 140 7 -15.93 -1.2140 MIMAT0009400 mmu-miR-1936 235441 Usp3 cggucaagugucguccAGUCAAu |||||| uuuuauauuaauguuuUCAGUUc 2 8 268 290 [mm9:9:66365930-66365952:-] 0.6656 120 6 -7.95 -0.1175 MIMAT0009421 mmu-miR-669o 235441 Usp3 uguAUUUGUACGUGUGU-GUUGAu |:| |||| | || ||||| uccUGACCAUG-AGUCAUCAACUa 2 21 5 27 [mm9:9:66366193-66366215:-] 0.6777 122 0 -14.44 -0.4666 MIMAT0009421 mmu-miR-669o 235441 Usp3 uguauUUGUACGUGUGU-GUUGAu |||||| | :|| ||||| uacccAACAUG-A-GCACCAACUa 2 19 136 157 [mm9:9:66366063-66366084:-] 0.6678 122 0 -19.39 -1.2155 MIMAT0011210 mmu-miR-2134 235441 Usp3 cgugggGCAAAGGGUUCUg | | :|||||| uaaauaCUUGAUCCAAGAg 2 14 53 71 [mm9:9:66366149-66366167:-] 0.7367 125 6 -13.01 -0.1935 MIMAT0012771 mmu-miR-432 235441 Usp3 gacGGGUGACUA--GAUGAGGUUCu :|||: || :|: |||||| uuuUCCAUAAAUACUUGAUCCAAGa 2 21 46 70 [mm9:9:66366150-66366174:-] 0.7367 123 6 -17.32 -0.2014 MIMAT0000124 mmu-miR-15b 235441 Usp3 acauuUGGUACUACACGACGAu |:: |||| |||||| caggcAUUUUGAUUGGCUGCUu 2 18 190 211 [mm9:9:66366009-66366030:-] 0.6656 129 6 -15.73 -0.1752 MIMAT0000127 mmu-miR-29b 235441 Usp3 uuGUGACUAAAGUUUACC-ACGAu || ||||::| ||| |||| agCAGGCAUUUUGAUUGGCUGCUu 2 22 188 211 [mm9:9:66366009-66366032:-] 0.6656 129 0 -11.70 -1.1718 MIMAT0000135 mmu-miR-125a-5p 235441 Usp3 aguguccaauuuCCCAGAGUCCCu | ||||||||| gucaccacugcuGUGUCUCAGGGu 2 13 463 486 [mm9:9:66365734-66365757:-] 0.5442 152 7 -21.82 -0.3291 MIMAT0000136 mmu-miR-125b-5p 235441 Usp3 aguguucaauCCCAGAGUCCCu | ||||||||| caccacugcuGUGUCUCAGGGu 2 13 465 486 [mm9:9:66365734-66365755:-] 0.5442 152 7 -20.93 -0.3264 MIMAT0000141 mmu-miR-130a 235441 Usp3 uacgggaaaauuguaACGUGAc |||||| agucaaauuucaguaUGCACUu 2 8 70 91 [mm9:9:66366129-66366150:-] 0.7367 120 6 -12.22 -0.2409 MIMAT0000158 mmu-miR-146a 235441 Usp3 uuggguaccuuAAGUCAAGAGu |||||||||| auauuaauguuUUCAGUUCUCa 2 12 272 293 [mm9:9:66365927-66365948:-] 0.6656 155 7 -18.72 -1.1199 MIMAT0000162 mmu-miR-152 235441 Usp3 ggUUCAAGACAGUACGUGAcu || ||| || ||||||| caAAUUUCAGU-AUGCACUuu 3 20 73 92 [mm9:9:66366128-66366147:-] 0.7367 145 0 -10.75 -0.2051 MIMAT0000163 mmu-miR-153 235441 Usp3 cuAGUGAAAACACUGAUACGUu ||| || | | |||||| agUCAAAUU--UCAGUAUGCAc 2 21 70 89 [mm9:9:66366131-66366150:-] 0.7367 121 6 -7.59 -0.3201 MIMAT0000165 mmu-miR-155 235441 Usp3 ugggGAUAGUGUUAAUCGUAAUu ||:| | | ||||||| guugCUGUGCC--UCAGCAUUAa 2 20 485 505 [mm9:9:66365715-66365735:-] 0.5442 144 7 -11.56 -0.2872 MIMAT0000225 mmu-miR-195 235441 Usp3 cgguUAUAAAGACACGACGAu || || | |||||| aggcAUUUUGAUUGGCUGCUu 2 18 191 211 [mm9:9:66366009-66366029:-] 0.6656 121 6 -13.40 -0.1703 MIMAT0000233 mmu-miR-200b 235441 Usp3 aguaguaaugguccGUCAUAau |||||| caagagucaaauuuCAGUAUgc 3 9 66 87 [mm9:9:66366133-66366154:-] 0.7367 120 0 -6.29 -0.2410 MIMAT0000236 mmu-miR-203 235441 Usp3 gaucaccaggauUUGUAAAGug |||||||| acuacaccggacAACAUUUCca 3 11 24 45 [mm9:9:66366175-66366196:-] 0.7072 130 0 -11.60 -0.3393 MIMAT0000236 mmu-miR-203 235441 Usp3 gaucaccaggauuugUAAAGUg |||||| ugauccaagagucaaAUUUCAg 2 8 61 82 [mm9:9:66366138-66366159:-] 0.7367 120 6 -7.45 -0.1712 MIMAT0000366 mmu-miR-290-5p 235441 Usp3 uuucacggggguauCAAACUca |||||| cagaacuuaguucuGUUUGAcu 3 9 246 267 [mm9:9:66365953-66365974:-] 0.6656 120 0 -8.47 -0.2580 MIMAT0000368 mmu-miR-291a-3p 235441 Usp3 cguguguuucaccuuCGUGAAa |||||| gucaaauuucaguauGCACUUu 2 8 71 92 [mm9:9:66366128-66366149:-] 0.7367 120 6 -9.80 -0.2506 MIMAT0000369 mmu-miR-292-5p 235441 Usp3 guuuUCUCGG---GGGUCAAACUca ||| |: ::| |||||| uuccAGAACUUAGUUCUGUUUGAcu 3 19 243 267 [mm9:9:66365953-66365977:-] 0.6656 125 0 -11.14 -0.2513 MIMAT0000372 mmu-miR-294 235441 Usp3 uguguguuuucccuuCGUGAAa |||||| gucaaauuucaguauGCACUUu 2 8 71 92 [mm9:9:66366128-66366149:-] 0.7367 120 6 -8.86 -0.2551 MIMAT0000373 mmu-miR-295 235441 Usp3 ucUGAGUUUUCA-UCAU-CGUGAAa | ||||| | |||| |||||| agAGUCAAAUUUCAGUAUGCACUUu 2 22 68 92 [mm9:9:66366128-66366152:-] 0.7367 136 6 -19.93 -1.2380 MIMAT0000379 mmu-miR-301a 235441 Usp3 cgaaacuguuaugauaACGUGAc |||||| gagucaaauuucaguaUGCACUu 2 8 69 91 [mm9:9:66366129-66366151:-] 0.7367 120 6 -9.46 -0.2453 MIMAT0000380 mmu-miR-302a 235441 Usp3 agUGGUUU--UGUACCUUCGUGAAu ::|||| || | | |||||| gaGUCAAAUUUCA-GUAUGCACUUu 2 22 69 92 [mm9:9:66366128-66366151:-] 0.7367 122 6 -12.34 -0.2528 MIMAT0000385 mmu-miR-106a 235441 Usp3 gauggacguGACAAUCGUGAAAc | || ||||||| gucaaauuuCAGUAUGCACUUUu 2 15 71 93 [mm9:9:66366127-66366149:-] 0.7367 146 7 -8.73 -1.2722 MIMAT0000386 mmu-miR-106b 235441 Usp3 uagacguGACAGUCGUGAAAu | || ||||||| caaauuuCAGUAUGCACUUUu 2 15 73 93 [mm9:9:66366127-66366147:-] 0.7367 146 7 -9.50 -1.2722 MIMAT0000387 mmu-miR-130b 235441 Usp3 uacgggAAAGUAGUAACGUGAc ||||| : |||||| gucaaaUUUCAGU-AUGCACUu 2 17 71 91 [mm9:9:66366129-66366149:-] 0.7367 122 6 -14.19 -0.2206 MIMAT0000516 mmu-miR-148a 235441 Usp3 ugUUUCAAGACAUCACGUGAcu ||| ||| ||| |||||| ucAAAUUUCAGUA-UGCACUuu 3 21 72 92 [mm9:9:66366128-66366148:-] 0.7367 150 0 -14.03 -0.1909 MIMAT0000526 mmu-miR-15a 235441 Usp3 guGUUUGGUAA--UACACGACGAu ||::| || || |||||| agCAGGCAUUUUGAUUGGCUGCUu 2 21 188 211 [mm9:9:66366009-66366032:-] 0.6656 123 6 -16.36 -0.1736 MIMAT0000527 mmu-miR-16 235441 Usp3 gcgguUAUAAAUGCACGACGAu || || |: |||||| caggcAUUUUGAUUGGCUGCUu 2 18 190 211 [mm9:9:66366009-66366030:-] 0.6656 125 6 -13.05 -0.1703 MIMAT0000527 mmu-miR-16 235441 Usp3 gcGGUUAUAAAUG-CAC-GACGAu ||::| || || ||| ||||| caCCGGU-UUCACAGUGACUGCUc 2 21 411 433 [mm9:9:66365787-66365809:-] 0.5442 125 0 -17.21 -0.2190 MIMAT0000529 mmu-miR-20a 235441 Usp3 gaUGGACGUGAUAUUCGUGAAAu | :| || ||| ||||||| caAAUUUCAGUAU--GCACUUUu 2 22 73 93 [mm9:9:66366127-66366147:-] 0.7367 154 7 -11.84 -1.2634 MIMAT0000533 mmu-miR-26a 235441 Usp3 ucgGAUAGGACCUAAUGAACUu :| ||| | ||||||| ccaUUUUCCAUAAAUACUUGAu 2 20 43 64 [mm9:9:66366156-66366177:-] 0.7367 151 7 -10.35 -1.2266 MIMAT0000534 mmu-miR-26b 235441 Usp3 ugGAUAGGACUUAAUGAACUu :| ||| || ||||||| caUUUUCCAUAAAUACUUGAu 2 20 44 64 [mm9:9:66366156-66366176:-] 0.7367 159 7 -10.28 -1.2266 MIMAT0000535 mmu-miR-29a 235441 Usp3 auuggcUAAAGUCUACC-ACGAu ||||:: ||| |||| gcaggcAUUUUGAUUGGCUGCUu 2 17 189 211 [mm9:9:66366009-66366031:-] 0.6656 120 0 -11.66 -1.1718 MIMAT0000536 mmu-miR-29c 235441 Usp3 auuggcUAAAGUUUACC-ACGAu ||||::| ||| |||| gcaggcAUUUUGAUUGGCUGCUu 2 17 189 211 [mm9:9:66366009-66366031:-] 0.6656 128 0 -10.64 -1.1718 MIMAT0000540 mmu-miR-93 235441 Usp3 gaUGGACGUGCUUGUCGUGAAAc | :| || | |: ||||||| caAAUUUCA-GUAU-GCACUUUu 2 22 73 93 [mm9:9:66366127-66366147:-] 0.7367 145 7 -9.04 -1.2655 MIMAT0000548 mmu-miR-322 235441 Usp3 agguuuuguACUUAACGACGAc ||| | |||||| caggcauuuUGAUUGGCUGCUu 2 14 190 211 [mm9:9:66366009-66366030:-] 0.6656 125 6 -13.09 -0.1752 MIMAT0000580 mmu-miR-148b 235441 Usp3 ugUUUCAAGACACUACGUGAcu ||| ||| || ||||||| ucAAAUUUCAGU-AUGCACUuu 3 21 72 92 [mm9:9:66366128-66366148:-] 0.7367 150 0 -14.03 -0.2051 MIMAT0004651 mmu-miR-340-5p 235441 Usp3 uuAGUCAGAGUAACGAAAUAUu || ||:| | | :|||||| guUCUGUUUGACU-UUUUAUAu 2 21 255 275 [mm9:9:66365945-66365965:-] 0.6656 142 6 -6.41 -0.1096 MIMAT0004651 mmu-miR-340-5p 235441 Usp3 uuagucaGAGUAACGAAAUAUu :||| | :|||||| guaauaaUUCAAU-UUUUAUAu 2 16 217 237 [mm9:9:66365983-66366003:-] 0.6656 133 6 -5.60 -0.1383 MIMAT0000590 mmu-miR-342-3p 235441 Usp3 ugccCACGCUAAAGACACAC-UCu ||| |: | |||||| || caucGUGAGGAUCGUGUGUGCAGg 2 20 378 401 [mm9:9:66365819-66365842:-] 0.5442 123 0 -16.45 -0.1017 MIMAT0000609 mmu-miR-351 235441 Usp3 guccgaguuuccCGAGGAGUCCCu |: :||||||| gucaccacugcuGUGUCUCAGGGu 2 13 463 486 [mm9:9:66365734-66365757:-] 0.5442 144 7 -18.25 -0.3291 MIMAT0000649 mmu-miR-17 235441 Usp3 gauggacguGACAUUCGUGAAAc | ||| ||||||| gucaaauuuCAGUAUGCACUUUu 2 15 71 93 [mm9:9:66366127-66366149:-] 0.7367 154 7 -10.32 -1.2722 MIMAT0000657 mmu-miR-200c 235441 Usp3 agguaguaaugggccGUCAUAau |||||| ccaagagucaaauuuCAGUAUgc 3 9 65 87 [mm9:9:66366133-66366155:-] 0.7367 120 0 -7.13 -0.2410 MIMAT0000669 mmu-miR-221 235441 Usp3 cuUUGGGUCGUCUGU-UACAUCGa ||::|| : :| ||||||: auAAUUCAAUUUUUAUAUGUAGUu 2 22 220 243 [mm9:9:66365977-66366000:-] 0.6656 132 0 -11.79 -0.1575 MIMAT0000670 mmu-miR-222 235441 Usp3 ugGGUCAUCGGUCUACAUCGa :|| | ::| ||||||: auUCAAUUUUUAUAUGUAGUu 2 20 223 243 [mm9:9:66365977-66365997:-] 0.6656 135 0 -11.34 -0.1575 MIMAT0000671 mmu-miR-224 235441 Usp3 uugccuUGGUGAUCACUGAAu | :: ||||||||| uuggucAGUGGUAGUGACUUa 2 16 117 137 [mm9:9:66366083-66366103:-] 0.6678 151 7 -17.44 -0.9336 MIMAT0000671 mmu-miR-224 235441 Usp3 uugccuuggugaucACUGAAu |||||| aacuuaguucuguuUGACUUu 2 8 249 269 [mm9:9:66365951-66365971:-] 0.6656 120 6 -9.31 -0.1587 MIMAT0001091 mmu-miR-410 235441 Usp3 uguccgguagacacAAUAUAa |||||| uaauaauucaauuuUUAUAUg 2 8 218 238 [mm9:9:66365982-66366002:-] 0.6656 120 6 -3.20 -0.2442 MIMAT0001091 mmu-miR-410 235441 Usp3 uguccgguagacacAAUAUAa |||||| uucuguuugacuuuUUAUAUu 2 8 256 276 [mm9:9:66365944-66365964:-] 0.6656 120 6 -6.76 -0.1919 MIMAT0001095 mmu-miR-370 235441 Usp3 ugguccaaggUGGGGUCGUCCg |||:||||||| cuaccagaaaACCUCAGCAGGc 2 13 173 194 [mm9:9:66366026-66366047:-] 0.6456 156 7 -32.61 -0.9901 MIMAT0001533 mmu-miR-448 235441 Usp3 uacccuGUAGGAUGUAUACGUu || ::| :|||||:| auaauuCAAUUUUUAUAUGUAg 2 17 220 241 [mm9:9:66365979-66366000:-] 0.6656 136 0 -10.33 -0.1068 MIMAT0001533 mmu-miR-448 235441 Usp3 uaCCCUGUAGGAUG-UAUACGUu | | || :| | :|||||| aaGAGUCAAAUUUCAGUAUGCAc 2 21 67 89 [mm9:9:66366131-66366153:-] 0.7367 131 6 -7.68 -0.3228 MIMAT0001537 mmu-miR-429 235441 Usp3 ugccguaauggucuGUCAUAau |||||| caagagucaaauuuCAGUAUgc 3 9 66 87 [mm9:9:66366133-66366154:-] 0.7367 120 0 -7.15 -0.2410 MIMAT0003168 mmu-miR-543 235441 Usp3 uucuucacguggcgcUUACAAa |||||| uugacuuuuuauauuAAUGUUu 2 8 262 283 [mm9:9:66365937-66365958:-] 0.6656 120 6 -3.93 -0.1492 MIMAT0003182 mmu-miR-494 235441 Usp3 cuccAAAGGGCACAUACAAAGu |||: : | ||||||: gacuUUUUAUAUUAAUGUUUUc 2 19 264 285 [mm9:9:66365935-66365956:-] 0.6656 134 0 -4.45 -0.1291 MIMAT0003187 mmu-miR-20b 235441 Usp3 gaUGGACGUGAUACUCGUGAAAc | :| || ||| ||||||| caAAUUUCAGUAU--GCACUUUu 2 22 73 93 [mm9:9:66366127-66366147:-] 0.7367 154 7 -11.26 -1.2634 MIMAT0003188 mmu-miR-503 235441 Usp3 gaCGUCAUGACAAGGGCGACGAu ||| | :|| | : |||||| agGCA-UUUUGAU-UGGCUGCUu 2 22 191 211 [mm9:9:66366009-66366029:-] 0.6656 121 6 -14.81 -0.1736 MIMAT0003374 mmu-miR-302b 235441 Usp3 gaUGAUUUUGUA--CCUUCGUGAAu | | |||: | | | |||||| agAGUCAAAUUUCAGUAUGCACUUu 2 22 68 92 [mm9:9:66366128-66366152:-] 0.7367 124 6 -8.71 -0.2528 MIMAT0003377 mmu-miR-302d 235441 Usp3 ugUGAGUUUGUA--CCUUCGUGAAu | |||||: | | | |||||| agAGUCAAAUUUCAGUAUGCACUUu 2 22 68 92 [mm9:9:66366128-66366152:-] 0.7367 132 6 -11.79 -0.2528 MIMAT0004186 mmu-miR-301b 235441 Usp3 cgaaacuguuaugguaACGUGAc |||||| gagucaaauuucaguaUGCACUu 2 8 69 91 [mm9:9:66366129-66366151:-] 0.7367 120 6 -10.45 -0.2453 MIMAT0003893 mmu-miR-761 235441 Usp3 acAC-AGUCAAAGUGGGAC-GACg || | || ||||||| ||| caUGCUGAGAGCCACCCUGACUGc 2 21 325 348 [mm9:9:66365872-66365895:-] 0.5442 123 0 -22.07 -0.1159 MIMAT0003738 mmu-miR-496 235441 Usp3 cucUAACCGGUACAUUAUGAGu ||| |||| ||||||: uccAUUUUCCAU-AAAUACUUg 2 20 42 62 [mm9:9:66366158-66366178:-] 0.7367 141 0 -9.12 -0.1583 MIMAT0003453 mmu-miR-497 235441 Usp3 auguuuggugucacaCGACGAc |||||| caggcauuuugauugGCUGCUu 2 8 190 211 [mm9:9:66366009-66366030:-] 0.6656 120 6 -12.16 -0.1786 MIMAT0003475 mmu-miR-146b 235441 Usp3 ucgGAUACCUUAAGUCAAGAGu :|| | |||||||||| auaUUAAUGUUUUCAGUUCUCa 2 20 272 293 [mm9:9:66365927-66365948:-] 0.6656 159 7 -18.82 -1.1199 MIMAT0003515 mmu-miR-721 235441 Usp3 aagggggAAAAUUA-ACGUGAc ||| |:| |||||| agucaaaUUUCAGUAUGCACUu 2 15 70 91 [mm9:9:66366129-66366150:-] 0.7367 122 6 -9.45 -1.2349 MIMAT0004869 mmu-miR-421 235441 Usp3 cgcgggUUAAUUACAGAC-AACUa | |||:| |||| |||| uccagaACUUAGU-UCUGUUUGAc 2 18 244 266 [mm9:9:66365954-66365976:-] 0.6656 123 0 -13.48 -1.2286 MIMAT0004889 mmu-miR-504 235441 Usp3 cuauCUCACGUCUGGUCC--CAGa || ||||||||||| ||| uuccGACUGCAGACCAGGCCGUCa 2 19 443 466 [mm9:9:66365754-66365777:-] 0.5442 130 0 -24.58 -0.4061

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G040797 Usp3 Mus musculus 235441 19536157 0 0 R54811; MOUSE$USP3_01; Binding factors: mmu-miR-103-3p , mmu-miR-107-3p , mmu-miR-15a-5p , mmu-miR-15b-5p , mmu-miR-16-5p , mmu-miR-1907 , mmu-miR-195a-5p , mmu-miR-322-5p , mmu-miR-497a-5p , mmu-miR-503-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Usp3 mmu-miR-148astar beg:235 end:254 pic:3' TCAGCCTCACAGAGTCTTGAAA 5'& .| ||| || |||||||| &5' ---TGTAGTTTC-CAGAACTT- 3' Usp3 mmu-miR-155 beg:490 end:506 pic:3' TGGGGATAGTGTTAATCGTAATT 5'& .||.| |||||||| &5' GCCTC----------AGCATTAA 3' Usp3 mmu-miR-146a beg:275 end:294 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& ||| ||||||||||| &5' -----ATGTT-TTCAGTTCTCA 3' Usp3 mmu-miR-146b beg:275 end:294 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& ||| ||||||||||| &5' -----ATGTT-TTCAGTTCTCA 3' Usp3 mmu-miR-409-3p beg:25 end:43 pic:3' TCCCCAAGTGGCTCGTTGTAAG 5'& ||||| |||||||. &5' -------CACCGGACAACATTT 3' Usp3 mmu-miR-351 beg:469 end:486 pic:3' GTCCGAGTTTCCCGAGGAGTCCCT 5'& ||| |. ||||||| &5' ---GCT------GTGTCTCAGGG- 3' Usp3 mmu-miR-17 beg:79 end:93 pic:3' GATGGACGTGACATTCGTGAAAC 5'& ||| ||||||| &5' -----------GTATGCACTTT- 3' Usp3 mmu-miR-455star beg:291 end:305 pic:3' GCTACATCAGGTTTCCGTGTAT 5'& || .|||||||| &5' ---------CC-GAGGCACAT- 3' Usp3 mcmv-miR-m107-1-5p beg:412 end:431 pic:3' CCACTGAGCTCTGCTCACTGGC 5'& ||| .|| || ||||||.| &5' GGT--TTC---AC-AGTGACTG 3' Usp3 mcmv-miR-m108-2-3p beg:54 end:75 pic:3' TGGCCAGTGAGC-AGAG-CTCAGTG 5'& .|||.| || |||||| &5' ------TACTTGATCCAAGAGTCA- 3' Usp3 mcmv-miR-m108-2-5p.1 beg:411 end:432 pic:3' GCCACGAGCGCAGCTCACTGGCG 5'& |||| .|| | ||||||.|| &5' CGGT-TTCAC----AGTGACTGC 3' Usp3 mcmv-miR-m59-1 beg:456 end:476 pic:3' GACTGCCAGCTCCGTGACGATT 5'& |.| ||| |||||||. &5' --GGCCGTCAC--CACTGCTG- 3' Usp3 mghv-miR-M1-6 beg:403 end:422 pic:3' TTTTGGTGGAGTGTGTCAAAGT 5'& . .|| ||| |.|||||| &5' ----TGGCC-CAC-CGGTTTCA 3' Usp3 mghv-miR-M1-7-5p beg:29 end:50 pic:3' TCCAATGGCGTGGAGGTGGAAA 5'& || || ||..||||..|| &5' -GG--ACAACATTTCCATTTT- 3' Usp3 mmu-miR-125a-3p beg:238 end:262 pic:3' CCGAGGGTTCTTGGAGT-GGACA 5'& |.|.|| |||||.| .|||| &5' -GTTTCC-AGAACTTAGTTCTGT 3' Usp3 mmu-miR-125a-5p beg:465 end:486 pic:3' AGTGTCCAATTTCCCAGAGTCCCT 5'& ||| | ||||||||| &5' -CACTGCT----GTGTCTCAGGG- 3' Usp3 mmu-miR-125b-5p beg:465 end:486 pic:3' AGTGTTCAATCCCAGAGTCCCT 5'& ||| | ||||||||| &5' -CACTGCT--GTGTCTCAGGG- 3' Usp3 mmu-miR-143 beg:412 end:435 pic:3' CTCGA--TGTCAC-GAAGTAGAGT 5'& .|.| |||||| || |||| &5' -GGTTTCACAGTGACTG---CTCA 3' Usp3 mmu-miR-17 beg:180 end:201 pic:3' GATGGA--CGTGACATTCGTGAAAC 5'& |||| ||| .|||.|||| &5' --ACCTCAGCA-----GGCATTTTG 3' Usp3 mmu-miR-17star beg:438 end:455 pic:3' GATGTTCACGGGAG--TGACGTCA 5'& ||.|| ||||||| &5' ---------CCTTCCGACTGCAG- 3' Usp3 mmu-miR-1898 beg:46 end:66 pic:3' CTAGGGGACACTTGGAACTGGA 5'& |.|| |||||.| &5' --TTCCATAAATA-CTTGATC- 3' Usp3 mmu-miR-18a beg:78 end:93 pic:3' GATAGACGTGATC-TACGTGGAAT 5'& || ||||||.|| &5' -----------AGTATGCACTTT- 3' Usp3 mmu-miR-18b beg:77 end:93 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& |||. ||||||.|| &5' ----CAGT-----ATGCACTTT- 3' Usp3 mmu-miR-193 beg:103 end:126 pic:3' TGACCCTGAAACAT-CCGGTCAA 5'& .|||| || || ||.|||| &5' -TTGGGGTTTAGTTTGGTCAGT- 3' Usp3 mmu-miR-193b beg:105 end:126 pic:3' TCGCCCTGAAACAC-CCGGTCAA 5'& ||| || || ||.|||| &5' ---GGGGTTTAGTTTGGTCAGT- 3' Usp3 mmu-miR-196astar beg:156 end:171 pic:3' AGTCCGTCAAAGAACAACGGCT 5'& ||.||||||..| &5' ---------TTTTTGTTGTTG- 3' Usp3 mmu-miR-19a beg:296 end:311 pic:3' AGTCAAAACGTATCTAAACGTGT 5'& ||| |||||||. &5' --------GCAC--ATTTGCAT- 3' Usp3 mmu-miR-19b beg:296 end:311 pic:3' AGTCAAAACGTACCTAAACGTGT 5'& ||| |||||||. &5' --------GCAC--ATTTGCAT- 3' Usp3 mmu-miR-203star beg:324 end:340 pic:3' ACAACTTGACAGTTCTTGGTGA 5'& || .|||.|||| &5' --------TGCTGAGAGCCAC- 3' Usp3 mmu-miR-20a beg:73 end:93 pic:3' GATGGACGTGATATTCGTGAAAT 5'& |..| || ||| ||||||| &5' --ATTT-CAGTAT--GCACTTT- 3' Usp3 mmu-miR-20b beg:73 end:93 pic:3' GATGGACGTGATACTCGTGAAAC 5'& |..| || ||| ||||||| &5' --ATTT-CAGTAT--GCACTTT- 3' Usp3 mmu-miR-20b beg:180 end:201 pic:3' GATGGA--CGTGATACTCGTGAAAC 5'& |||| ||| .|||.|||| &5' --ACCTCAGCA-----GGCATTTTG 3' Usp3 mmu-miR-20bstar beg:433 end:455 pic:3' GATCTTCACGAGTG-TGACGTCA 5'& .||| || | ||||||| &5' --GGAATTCCTTCCGACTGCAG- 3' Usp3 mmu-miR-2145 beg:358 end:379 pic:3' TTGGTCCGG--GCTG-GGACGA 5'& |.|||||.| |||| || &5' AGCCAGGTCAGCGACTCC---- 3' Usp3 mmu-miR-2145 beg:451 end:475 pic:3' TTGGTCCGGGC-TGG-GACGA 5'& .|||||||| ||| ||||| &5' GACCAGGCCGTCACCACTGCT 3' Usp3 mmu-miR-215 beg:351 end:371 pic:3' CAGACAGTTTAGTA--TCCAGTA 5'& || ||| || |||||| &5' --CT-TCATAGCAGCCAGGTCA- 3' Usp3 mmu-miR-21star beg:152 end:171 pic:3' CTGTCGGGTAGCTGACGACAAC 5'& |.| .||.||||| &5' ------CTAATTTTTGTTGTTG 3' Usp3 mmu-miR-224 beg:116 end:138 pic:3' TTGCCT-TGGTGATCACTGAAT 5'& || | .. |||||||||| &5' ---GGTCAGTGGTAGTGACTTA 3' Usp3 mmu-miR-24 beg:0 end:21 pic:3' GACAAGGACGACTTG-ACTCGGT 5'& ||| |||| ||||.|| &5' -----CCTCCTGACCATGAGTCA 3' Usp3 mmu-miR-26a beg:46 end:64 pic:3' TCGGATAGGACCTAATGAACTT 5'& ||| ||||||| &5' ------TCCATAAATACTTGA- 3' Usp3 mmu-miR-26b beg:46 end:64 pic:3' TGGATAGGACTTAATGAACTT 5'& ||| || ||||||| &5' -----TCCATAAATACTTGA- 3' Usp3 mmu-miR-290-5p beg:94 end:110 pic:3' TTTCACGGGGGTATCAAACTCA 5'& . || ||||||.| &5' ------TTTCC--AGTTTGGG- 3' Usp3 mmu-miR-291b-3p beg:79 end:93 pic:3' TGTTTGTTTTACCTACGTGAAA 5'& | ||||||||| &5' -----------GTATGCACTTT 3' Usp3 mmu-miR-291b-5p beg:186 end:204 pic:3' CCTCTCCCGGAGGTGAAACTAG 5'& || ||.||||||. &5' -------GCAGGCATTTTGATT 3' Usp3 mmu-miR-292-3p beg:177 end:200 pic:3' TGTGAGTTTTGGAC-CG-CCGTGAAA 5'& ||||||| || ||||.||| &5' ------AAAACCTCAGCAGGCATTTT 3' Usp3 mmu-miR-292-5p beg:94 end:110 pic:3' GTTTTCTCGGGGGTCAAACTCA 5'& . ||||||||.| &5' --------TTTCCAGTTTGGG- 3' Usp3 mmu-miR-293star beg:90 end:110 pic:3' GTTTTACAGTGT---GTCAAACTCA 5'& ||| |||||||.| &5' -------TCAATTTCCAGTTTGGG- 3' Usp3 mmu-miR-29bstar beg:438 end:460 pic:3' ATTTGGT-GGTATAC-TTTGGTCG 5'& || ||. || |.||||| &5' ----CCTTCCGACTGCAGACCAG- 3' Usp3 mmu-miR-327 beg:464 end:485 pic:3' TAGGAGT--ACGGGGAGTTCA 5'& || | ||. .||||.| &5' --CCACTGCTGTGTCTCAGG- 3' Usp3 mmu-miR-330star beg:475 end:501 pic:3' AGAGACGTCCGG-GACACGAAA-CG 5'& |||| .||.. |||||| || &5' TCTCA--GGGTTGCTGTGCCTCAGC 3' Usp3 mmu-miR-345-3p beg:239 end:259 pic:3' CAGAGGTCTGGGGATCAAGTCC 5'& ||.|||||| |.|||||| &5' GTTTCCAGAA-CTTAGTTC--- 3' Usp3 mmu-miR-3474 beg:464 end:486 pic:3' CTTAGGTGCAGA-GGAGGGTCCC 5'& |||| || . ||.||||| &5' ----CCACTGCTGTGTCTCAGGG 3' Usp3 mmu-miR-3475 beg:232 end:250 pic:3' AAGTTTGGTACA-CGGAGGTCT 5'& .|||| |..|||||| &5' -------TATGTAGTTTCCAGA 3' Usp3 mmu-miR-34c beg:456 end:475 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& .|| | ||||||. &5' ------GGCCGTCACCACTGCT- 3' Usp3 mmu-miR-370 beg:173 end:195 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& ||||| |||.|||||||| &5' ACCAGAAA--ACCTCAGCAGGC 3' Usp3 mmu-miR-449a beg:456 end:475 pic:3' TGGTCGATTGTTATGTGACGGT 5'& .|| || ||||||. &5' ---GGCCGTCAC--CACTGCT- 3' Usp3 mmu-miR-449b beg:453 end:475 pic:3' CGGT-CGATTGTTGTGACGGA 5'& ||| || || ||||||. &5' -CCAGGCCGTCACCACTGCT- 3' Usp3 mmu-miR-450b-5p beg:435 end:456 pic:3' ATAAGTCCTTGTATGACGTTTT 5'& |||| ||||||.| &5' -ATTCCTTCCG--ACTGCAGA- 3' Usp3 mmu-miR-452 beg:428 end:457 pic:3' CAGAGTCA--AAGGA-----GACGTTTGT 5'& ||||| ||||| |||||.|| &5' --CTCAGGAATTCCTTCCGACTGCAGAC- 3' Usp3 mmu-miR-452 beg:174 end:196 pic:3' CAGAGTCAAA-GGAGACGTTTGT 5'& ||| |||| |||..|| &5' ----CAGAAAACCTCAGCAGGCA 3' Usp3 mmu-miR-466g beg:388 end:408 pic:3' ACACACACGTACACAGACATA 5'& ||||||||| ||||||. &5' -GTGTGTGCAG--GTCTGTG- 3' Usp3 mmu-miR-470 beg:408 end:439 pic:3' TGAGTGGTCACG--GTCA------GGTTCTT 5'& ||||.|| |||| .||.||| &5' ---CACCGGTTTCACAGTGACTGCTCAGGAA 3' Usp3 mmu-miR-504 beg:472 end:488 pic:3' CTATCTCACGTCTGGTCCCAGA 5'& |||. .||||||. &5' ------GTGTC--TCAGGGTT- 3' Usp3 mmu-miR-541 beg:421 end:445 pic:3' TCACACTGGTTGTAGTCTTAGGGAA 5'& |||||. .| .||||.|||| &5' ---GTGACT-GCTCAGGAATTCCTT 3' Usp3 mmu-miR-542-5p beg:321 end:345 pic:3' AGCACTGTACTACTA-----GGGGCTC 5'& ||||| ||| |||.|| &5' -----ACATGCTGAGAGCCACCCTGA- 3' Usp3 mmu-miR-669j beg:379 end:400 pic:3' ACAAACGTACACT-----CATATACGT 5'& |||| ||.|.|||| &5' ---------GTGAGGATCGTGTGTGCA 3' Usp3 mmu-miR-672 beg:169 end:189 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& || .|| ||| | ||||||| &5' TC-TAC-CAG-AA---AACCTCA 3' Usp3 mmu-miR-694 beg:273 end:288 pic:3' GAAGTCCGTTGTAAAAGTC 5'& .||..||||||| &5' -------TAATGTTTTCAG 3' Usp3 mmu-miR-696 beg:135 end:152 pic:3' GGG-TGTCGTTCGTGTGCG 5'& ||| ||| ..||||| | &5' CCCAACA-TGAGCAC-C-- 3' Usp3 mmu-miR-696 beg:181 end:201 pic:3' GGGTGTCGTTCGTGT-GCG 5'& || |||||.|||. .| &5' -CCTCAGCAGGCATTTTG- 3' Usp3 mmu-miR-708star beg:201 end:218 pic:3' GATCTTCGAGTGTCAGATCAAC 5'& .||| .| |.|||||| &5' -----GGCT-GC--TTTAGTTG 3' Usp3 mmu-miR-713 beg:482 end:500 pic:3' CGAC-ACACGGAAGTCACGT 5'& |.|| |||||| |||| &5' GTTGCTGTGCC-TCAG---- 3' Usp3 mmu-miR-717 beg:244 end:266 pic:3' TCTCTTCCATAGAGACAGACTC 5'& |||| || .|||||.||| &5' --AGAACTTAGTTCTGTTTGA- 3' Usp3 mmu-miR-758 beg:403 end:425 pic:3' ATCACC---TGGTCC-AGTGTTT 5'& |||| |||.| |||||. &5' --GTGGCCCACCGGTTTCACAG- 3' Usp3 mmu-miR-764-5p beg:139 end:153 pic:3' TCCTCCTGTACACTCGTGG 5'& ||| |||||||| &5' ------ACA--TGAGCACC 3' Usp3 mmu-miR-770-3p beg:392 end:414 pic:3' GGTCGAGGTGCAGT--CCGGGTGC 5'& |. || ||| ||||||| &5' ---GTG-CAGGTCTGTGGCCCAC- 3' Usp3 mmu-miR-879star beg:5 end:19 pic:3' GGCTTTCGAACTTCGGTATTCG 5'& ||| ||||.||. &5' ---------TGA--CCATGAGT 3' Usp3 mmu-miR-883a-5p beg:482 end:502 pic:3' CATTGACGATGAA--GAGAGTCGT 5'& |.|.|| | ||||||| &5' ------GTTGCTGTGC-CTCAGCA 3' Usp3 mmu-miR-93star beg:182 end:193 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& |||||||| &5' -------------CTCAGCAG- 3' Usp3 mmu-miR-9star beg:194 end:214 pic:3' TGAAAGCCAATAGATCGAAATA 5'& |||.| ||. || |||||| &5' --TTTTGATTGGCT-GCTTTA- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp3 RAID00022868 mmu-miR-221-3p miRNA MIMAT0000669 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID00030951 mmu-miR-29b-3p miRNA MIMAT0000127 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID00064200 mmu-miR-340-5p miRNA MIMAT0004651 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID00160449 mmu-miR-383-3p miRNA MIMAT0017082 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID00186353 mmu-miR-6411 miRNA MIMAT0025164 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID00277963 mmu-miR-448-3p miRNA MIMAT0001533 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID00328381 mmu-miR-7647-5p miRNA MIMAT0029796 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID00474369 mmu-miR-6918-5p miRNA MIMAT0027736 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID00509562 mmu-miR-7227-3p miRNA MIMAT0028423 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID00561327 mmu-miR-429-3p miRNA MIMAT0001537 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID00565177 mmu-miR-770-3p miRNA MIMAT0003891 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID00580956 mmu-miR-721 miRNA MIMAT0003515 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID00600909 mmu-miR-148a-3p miRNA MIMAT0000516 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID00622102 mmu-miR-224-5p miRNA MIMAT0000671 Usp3 mRNA 235441 Prediction 0.2202 Usp3 RAID00626173 mmu-miR-470-5p miRNA MIMAT0002111 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID00644383 mmu-miR-15a-5p miRNA MIMAT0000526 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID00654266 mmu-miR-29c-3p miRNA MIMAT0000536 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID00666758 mmu-miR-504-5p miRNA MIMAT0004889 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID00690238 mmu-miR-93-3p miRNA MIMAT0004636 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID00730653 mmu-miR-302b-3p miRNA MIMAT0003374 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID00788872 mmu-miR-421-3p miRNA MIMAT0004869 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID00813388 mmu-miR-7005-3p miRNA MIMAT0027915 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID00829865 mmu-miR-409-3p miRNA MIMAT0001090 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID00921481 mmu-miR-125a-5p miRNA MIMAT0000135 Usp3 mRNA 235441 Prediction 0.2202 Usp3 RAID00932001 mmu-miR-195a-5p miRNA MIMAT0000225 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID00932208 mmu-miR-106a-5p miRNA MIMAT0000385 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6559 Usp3 RAID00944193 mmu-miR-203-3p miRNA MIMAT0000236 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6478 Usp3 RAID00985359 mmu-miR-452-5p miRNA MIMAT0001637 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID01071403 mmu-miR-6970-5p miRNA MIMAT0027842 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01097335 mmu-miR-153-3p miRNA MIMAT0000163 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID01100797 mmu-miR-26a-5p miRNA MIMAT0000533 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6559 Usp3 RAID01124221 mmu-miR-124-3p miRNA MIMAT0000134 Usp3 mRNA 235441 Microarray 0.5483 Usp3 RAID01152714 mmu-miR-351-5p miRNA MIMAT0000609 Usp3 mRNA 235441 Prediction 0.2202 Usp3 RAID01154478 mmu-miR-3065-5p miRNA MIMAT0014836 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01176821 mmu-miR-291a-3p miRNA MIMAT0000368 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6478 Usp3 RAID01192073 mmu-miR-20b-3p miRNA MIMAT0004788 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01222897 mmu-miR-497a-5p miRNA MIMAT0003453 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID01363034 mmu-miR-295-3p miRNA MIMAT0000373 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6478 Usp3 RAID01373807 mmu-miR-140-3p miRNA MIMAT0000152 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01394507 mmu-miR-503-5p miRNA MIMAT0003188 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID01396508 mmu-miR-455-5p miRNA MIMAT0003485 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01411124 mmu-miR-222-3p miRNA MIMAT0000670 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID01418515 mmu-miR-342-3p miRNA MIMAT0000590 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01487112 mmu-miR-302a-3p miRNA MIMAT0000380 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID01489062 mmu-miR-330-3p miRNA MIMAT0000569 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01519063 mmu-miR-292a-3p miRNA MIMAT0000370 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01589779 mmu-miR-292a-5p miRNA MIMAT0000369 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01606718 mmu-miR-183-3p miRNA MIMAT0004539 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01607327 mmu-miR-875-3p miRNA MIMAT0004938 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01671686 mmu-miR-494-3p miRNA MIMAT0003182 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01726354 mmu-miR-200b-3p miRNA MIMAT0000233 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID01807196 mmu-miR-6367 miRNA MIMAT0025111 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01875412 mmu-miR-302d-3p miRNA MIMAT0003377 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID01891902 mmu-miR-148a-5p miRNA MIMAT0004617 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01955597 mmu-miR-8107 miRNA MIMAT0031412 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01965488 mmu-miR-6902-3p miRNA MIMAT0027705 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID01991105 mmu-miR-290a-5p miRNA MIMAT0000366 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02033274 mmu-miR-882 miRNA MIMAT0004847 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02055855 mmu-miR-155-5p miRNA MIMAT0000165 Usp3 mRNA 235441 Prediction 0.2202 Usp3 RAID02072186 mmu-miR-6481 miRNA MIMAT0027339 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02092077 mmu-miR-130b-3p miRNA MIMAT0000387 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID02144268 mmu-miR-1912-3p miRNA MIMAT0014958 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02149991 mmu-miR-876-5p miRNA MIMAT0004854 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02198888 mmu-miR-148b-5p miRNA MIMAT0017036 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02203209 mmu-miR-3473g miRNA MIMAT0031427 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02299916 mmu-miR-370-3p miRNA MIMAT0001095 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID02335226 mmu-miR-301b-3p miRNA MIMAT0004186 Usp3 mRNA 235441 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 Usp3 RAID02472721 mmu-miR-6974-5p miRNA MIMAT0027850 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02474595 mmu-miR-7024-3p miRNA MIMAT0027953 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02485460 mmu-miR-93-5p miRNA MIMAT0000540 Usp3 mRNA 235441 Prediction 0.2455 Usp3 RAID02563301 mmu-miR-130a-3p miRNA MIMAT0000141 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID02615125 mmu-miR-7224-3p miRNA MIMAT0028417 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02655153 mmu-miR-466q miRNA MIMAT0020631 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02661079 mmu-miR-6394 miRNA MIMAT0025144 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02670981 mmu-miR-7214-5p miRNA MIMAT0028396 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02675042 mmu-miR-125b-5p miRNA MIMAT0000136 Usp3 mRNA 235441 Prediction 0.2202 Usp3 RAID02678480 mmu-miR-106b-5p miRNA MIMAT0000386 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6559 Usp3 RAID02795681 mmu-miR-322-5p miRNA MIMAT0000548 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID02804210 mmu-miR-20b-5p miRNA MIMAT0003187 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6559 Usp3 RAID02831574 mmu-miR-26b-5p miRNA MIMAT0000534 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6592 Usp3 RAID02864752 mmu-miR-301a-3p miRNA MIMAT0000379 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID02879274 mmu-miR-148b-3p miRNA MIMAT0000580 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID02902620 mmu-miR-29a-3p miRNA MIMAT0000535 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID02938956 mmu-miR-106a-3p miRNA MIMAT0017009 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID02966150 mmu-miR-5129-3p miRNA MIMAT0022987 Usp3 mRNA 235441 Prediction 0.2202 Usp3 RAID02995751 mmu-miR-20a-5p miRNA MIMAT0000529 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6559 Usp3 RAID03034711 mmu-miR-17-3p miRNA MIMAT0000650 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03044229 mmu-miR-16-5p miRNA MIMAT0000527 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID03099632 mmu-miR-329-5p miRNA MIMAT0017032 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03133541 mmu-miR-17-5p miRNA MIMAT0000649 Usp3 mRNA 235441 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7414 Usp3 RAID03133687 mmu-miR-7061-5p miRNA MIMAT0028026 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03243232 mmu-miR-146b-5p miRNA MIMAT0003475 Usp3 mRNA 235441 Prediction 0.2202 Usp3 RAID03280337 mmu-miR-1224-5p miRNA MIMAT0005460 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03319773 mmu-miR-6335 miRNA MIMAT0025077 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03349723 mmu-miR-6414 miRNA MIMAT0025168 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03393107 mmu-miR-146a-3p miRNA MIMAT0016989 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03398730 mmu-miR-761 miRNA MIMAT0003893 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03399849 mmu-miR-152-3p miRNA MIMAT0000162 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03471793 mmu-miR-200c-3p miRNA MIMAT0000657 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID03486141 mmu-miR-410-3p miRNA MIMAT0001091 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID03539401 mmu-miR-6391 miRNA MIMAT0025140 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03554433 mmu-miR-871-3p miRNA MIMAT0017265 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03573671 mmu-miR-382-5p miRNA MIMAT0000747 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03588782 mmu-miR-126b-5p miRNA MIMAT0029894 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03632012 mmu-miR-294-3p miRNA MIMAT0000372 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6478 Usp3 RAID03726405 mmu-miR-6383 miRNA MIMAT0025129 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03733253 mmu-miR-15b-5p miRNA MIMAT0000124 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308 Usp3 RAID03786201 mmu-miR-146a-5p miRNA MIMAT0000158 Usp3 mRNA 235441 Prediction 0.2202 Usp3 RAID03811082 mmu-miR-291b-3p miRNA MIMAT0003190 Usp3 mRNA 235441 Prediction 0.2202 Usp3 RAID03814006 mmu-miR-379-5p miRNA MIMAT0000743 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03833941 mmu-miR-543-3p miRNA MIMAT0003168 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03840988 mmu-miR-350-5p miRNA MIMAT0017040 Usp3 mRNA 235441 Prediction 0.2202 Usp3 RAID03917832 mmu-miR-290a-3p miRNA MIMAT0004572 Usp3 mRNA 235441 Prediction 0.1828 Usp3 RAID03999416 mmu-miR-496a-3p miRNA MIMAT0003738 Usp3 mRNA 235441 CLIP-seq//Prediction 0.6308