DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Copb2 ATTTA 91-2808 2817-2821

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 50797 Copb2 cgacguuuguaggcUGACUUUc ||||||| uguucuccuugguaACUGAAAc 2 9 156 177 [mm9:9:98488715-98488736:+] 0.5154 140 7 -7.38 -0.6774 MIMAT0004545 mmu-miR-200b* 50797 Copb2 agguuACGACGGGUCAUUCUac | ||| |||||||| ccauuUACUG--CAGUAAGAga 3 18 7 26 [mm9:9:98488566-98488585:+] 0.4839 134 0 -16.36 -0.2513 MIMAT0000234 mmu-miR-201 50797 Copb2 uucuuguuACGG--AAUGAC-UCAu |||| |||||| ||| ----aguuUGCCAUUUACUGCAGUa 2 15 1 21 [mm9:9:98488560-98488580:+] 0.4839 121 0 -14.51 -0.9926 MIMAT0000249 mmu-miR-30e* 50797 Copb2 cgACAUUUGUAGGC--UGACUUUc ||| | |: | ||||||| uaUGUUCUCCUUGGUAACUGAAAc 2 21 154 177 [mm9:9:98488713-98488736:+] 0.5154 143 7 -8.98 -0.6774 MIMAT0004574 mmu-miR-294* 50797 Copb2 ucuaucccggagguAAAACUca |||||| cccgucauaaaaucUUUUGAau 3 9 213 234 [mm9:9:98488772-98488793:+] 0.5154 120 0 -4.85 -0.1010 MIMAT0004579 mmu-miR-302a* 50797 Copb2 cgUUCA--UGUUGGU-GCAAAUUCa :||| |::: || |||||||| agGAGUUGAUGGGCAGCGUUUAAGu 2 21 126 150 [mm9:9:98488685-98488709:+] 0.4974 154 7 -15.22 -0.2025 MIMAT0004617 mmu-miR-148a* 50797 Copb2 ucagccucACAGAGUCUUGAAa || | |||||||| caccauccUGAC-CAGAACUUu 2 15 51 71 [mm9:9:98488610-98488630:+] 0.4597 148 7 -11.78 -0.2854 MIMAT0004619 mmu-miR-200a* 50797 Copb2 aggucGUGACAGGCCAUUCUac :|||| | |||||| ccauuUACUG--CAGUAAGAga 3 18 7 26 [mm9:9:98488566-98488585:+] 0.4839 130 0 -15.48 -0.2513 MIMAT0000558 mmu-miR-325* 50797 Copb2 uguGAAUGACUCGUGGAUGAUCc :|| | | :: :|||||| uuuUUUUCAUAUUG-UUACUAGa 2 21 188 209 [mm9:9:98488747-98488768:+] 0.5154 126 6 -8.99 -0.1106 MIMAT0004647 mmu-miR-338-5p 50797 Copb2 gugagucgugguccUAUAACAa ||||||| acuugcuuuuuuucAUAUUGUu 2 9 182 203 [mm9:9:98488741-98488762:+] 0.5154 140 7 -8.88 -0.9149 MIMAT0000593 mmu-miR-344 50797 Copb2 ugucAGUCCGAAACCGAUCUAGu ||| :| | ||||||| uuuuUCAUAUUGUUACUAGAUCa 2 20 190 212 [mm9:9:98488749-98488771:+] 0.5154 151 7 -12.42 -1.2450 MIMAT0000650 mmu-miR-17* 50797 Copb2 gauguucACGG-GAGUGACGUCa |||| :|:||||||| ---aguuUGCCAUUUACUGCAGu 2 16 1 20 [mm9:9:98488560-98488579:+] 0.4839 158 7 -21.85 -0.9381 MIMAT0004660 mmu-miR-19a* 50797 Copb2 caucaCGUUGA-UACGU-UUUGAu |:|||| | || ||||| ccuugGUAACUGAAACAGAAACUu 2 18 162 185 [mm9:9:98488721-98488744:+] 0.5154 120 0 -11.79 -0.5401 MIMAT0004663 mmu-miR-200c* 50797 Copb2 gguuuGUGACGACCCAUUCUgc :||||| |||||| ccauuUACUGC--AGUAAGAga 3 18 7 26 [mm9:9:98488566-98488585:+] 0.4839 130 0 -19.37 -0.2491 MIMAT0001419 mmu-miR-433* 50797 Copb2 cuUAUUACUGUCCGAGU-GGCAu || :| || | ||| |||| auAUUGUUACUAGAUCACCCGUc 2 21 196 218 [mm9:9:98488755-98488777:+] 0.5154 120 0 -9.15 -1.2584 MIMAT0004782 mmu-miR-483 50797 Copb2 gagggaagagaAGAGGGCAGaa || |||||| uuguuacuagaUCACCCGUCau 3 12 199 220 [mm9:9:98488758-98488779:+] 0.5154 127 0 -14.23 -0.2443 MIMAT0004788 mmu-miR-20b* 50797 Copb2 gaucuucACGAGU--GUGACGUCa ||| || :||||||| ---aguuUGC-CAUUUACUGCAGu 2 16 1 20 [mm9:9:98488560-98488579:+] 0.4839 144 7 -17.20 -0.9413 MIMAT0004188 mmu-miR-802 50797 Copb2 uuccuacuuagaAACAAUGAcu |||||||| cuuuuuuucauaUUGUUACUag 3 11 187 208 [mm9:9:98488746-98488767:+] 0.5154 130 0 -8.64 -0.1254 MIMAT0003471 mmu-miR-692 50797 Copb2 cucacuccgcgaguUUCUCUa |||||| ccauuuacugcaguAAGAGAu 2 8 7 27 [mm9:9:98488566-98488586:+] 0.4839 120 6 -10.28 -0.1518 MIMAT0003474 mmu-miR-694 50797 Copb2 gaaguccGUUGUAAAAGUc :::|||||||| auuauuaUGGCAUUUUCAa 2 13 26 44 [mm9:9:98488585-98488603:+] 0.4792 148 7 -8.25 -0.6878 MIMAT0004849 mmu-miR-883a-3p 50797 Copb2 uauGACUCUCGACAACGUCAau :|| | :| |||||| aguUUGCCAUUUACUGCAGUaa 3 20 1 22 [mm9:9:98488560-98488581:+] 0.4839 127 0 -6.99 -0.1498 MIMAT0004851 mmu-miR-883b-3p 50797 Copb2 uauGACUCUCUACAACGUCAau :|| | | |||||| aguUUGCCAUUUACUGCAGUaa 3 20 1 22 [mm9:9:98488560-98488581:+] 0.4839 123 0 -6.63 -0.1498 MIMAT0004932 mmu-miR-878-5p 50797 Copb2 acAGAACUGUAG-GUUGAUCUAu |:|| |:||: : ||||||| uuUUUUCAUAUUGUUACUAGAUc 2 21 189 211 [mm9:9:98488748-98488770:+] 0.5154 159 7 -10.18 -0.9632 MIMAT0004938 mmu-miR-875-3p 50797 Copb2 guaUCGGAGUCAUAAAAGUcc | |:| | |||||| agaAACUUGCUUUUUUUCAua 3 19 178 198 [mm9:9:98488737-98488757:+] 0.5154 126 0 -4.53 -0.1195 MIMAT0011208 mmu-miR-2132 50797 Copb2 guagcgcagUUGUGGGCGg | ||||||: uguuacuagAUCACCCGUc 2 11 200 218 [mm9:9:98488759-98488777:+] 0.5154 126 0 -17.54 -0.2487 MIMAT0000368 mmu-miR-291a-3p 50797 Copb2 cgUGUGUUUCACCU----UC-GUGAAa | ||||:| ||| || ||||| guAAACAAGGGGGAACAUAGCCACUUc 2 21 93 119 [mm9:9:98488652-98488678:+] 0.4622 123 0 -15.39 -0.7539 MIMAT0000372 mmu-miR-294 50797 Copb2 ugUGUGUUUUCCCU----UC-GUGAAa | ||||::|||| || ||||| guAAACAAGGGGGAACAUAGCCACUUc 2 21 93 119 [mm9:9:98488652-98488678:+] 0.4622 127 0 -19.29 -0.7502 MIMAT0000662 mmu-miR-216a 50797 Copb2 aguGUCAACG--GUCG-ACUCUAAu || || | |||: |||||| ugcCAUUUACUGCAGUAAGAGAUUa 2 20 5 29 [mm9:9:98488564-98488588:+] 0.4839 121 6 -13.70 -0.2043 MIMAT0003729 mmu-miR-216b 50797 Copb2 aguGUAAACG--GACG-UCUCUAAa ||||| | | |: ||||||| ugcCAUUUACUGCAGUAAGAGAUUa 2 20 5 29 [mm9:9:98488564-98488588:+] 0.4839 153 7 -15.86 -1.2435 MIMAT0004854 mmu-miR-876-5p 50797 Copb2 aucacuaagugucUCUUUAGGu :||||||| ugaccagaacuuuGGAAAUCCu 2 10 59 80 [mm9:9:98488618-98488639:+] 0.4597 141 7 -11.32 -0.5411

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G066057 Copb2 Mus musculus 50797

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Copb2 mmu-miR-17star beg:2 end:21 pic:3' GATGTTCACGG-GAGTGACGTCA 5'& |||| .|.|||||||| &5' -------TGCCATTTACTGCAGT 3' Copb2 mmu-miR-20bstar beg:2 end:21 pic:3' GATCTTCACGAGTG--TGACGTCA 5'& ||| ||. |||||||| &5' -------TGC-CATTTACTGCAGT 3' Copb2 mmu-miR-148astar beg:60 end:72 pic:3' TCAGCCTCACAGAGTCTTGAAA 5'& ||||||||| &5' -------------CAGAACTTT 3' Copb2 mmu-miR-216b beg:11 end:29 pic:3' AGTGTAAACGGACG----TCTCTAAA 5'& |||| ||||||| &5' ----------CTGCAGTAAGAGATT- 3' Copb2 mmu-miR-694 beg:31 end:44 pic:3' GAAGTCCGTTGTAAAAGTC 5'& ..|||||||| &5' --------GGCATTTTCA- 3' Copb2 mmu-miR-302astar beg:134 end:149 pic:3' CGTTCATGTTGGTGCAAATTCA 5'& ..| .||||||||| &5' --------GGCAGCGTTTAAGT 3' Copb2 mcmv-miR-m01-1 beg:146 end:166 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& ||| |.|||||||. &5' --GTTACTA--TGTTCTCCTT- 3' Copb2 mmu-miR-1306 beg:46 end:66 pic:3' GTAGTGGTGGT-CTCGGTTGCA 5'& |||||||.| || |||. &5' -ATCACCATCCTGA-CCAG--- 3' Copb2 mmu-miR-143 beg:106 end:125 pic:3' CTCGATGTCAC-GAAGTAGAGT 5'& |.|| ||||||||. &5' -----ATAGCCACTTCATCTT- 3' Copb2 mmu-miR-145star beg:120 end:130 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& |.|||||.| &5' -------------TTCAGGAGT 3' Copb2 mmu-miR-1934 beg:57 end:67 pic:3' TCTCCTGCTTCGTCCCCTGGTCT 5'& ||||||| &5' ----------------GACCAGA 3' Copb2 mmu-miR-20b beg:25 end:42 pic:3' GATGGACGTGATACTCGTGAAAC 5'& .|.|||| |||.||| &5' -------TATTATG-GCATTTT- 3' Copb2 mmu-miR-2146 beg:64 end:89 pic:3' GTGT-ACC-TTGGGAAG-AGGTG 5'& || ||| ||.|||| |. | &5' -ACTTTGGAAATCCTTGATTTGC 3' Copb2 mmu-miR-218-1star beg:140 end:160 pic:3' CCACGAACTG-CCTTGGTACAAA 5'& || | ||.||||| &5' ---GCGTTTAAGTTACTATGTT- 3' Copb2 mmu-miR-24-2star beg:120 end:141 pic:3' TGACAAAGTCG--AGTCATCCGTG 5'& ||||| |. |.|||| &5' -----TTCAGGAGTTGATGGGCA- 3' Copb2 mmu-miR-337-3p beg:116 end:135 pic:3' TCCGTAGTATATCCTCGACTT 5'& |||| |||||.||| &5' ---CATCTTC-AGGAGTTGA- 3' Copb2 mmu-miR-344 beg:191 end:213 pic:3' TGTCAGTCCGAAACCGATCTAGT 5'& ||| .| |||||||| &5' ----TCATATTGTTACTAGATCA 3' Copb2 mmu-miR-493 beg:101 end:127 pic:3' GGACCGTGTGTCATCC---TGGAAGT 5'& || |||.|| |.||||| &5' ---GGAACATAGCCACTTCATCTTCA 3' Copb2 mmu-miR-541 beg:209 end:231 pic:3' TCACACTGGTTGTAGTC--TTAGGGAA 5'& ||| |.||| ||||..|| &5' ------ACC--CGTCATAAAATCTTTT 3' Copb2 mmu-miR-691 beg:109 end:130 pic:3' AAAAGACGG---AG-AGAAGTCCTTA 5'& ||| || |||||||||.| &5' ------GCCACTTCATCTTCAGGAGT 3' Copb2 mmu-miR-7b beg:172 end:197 pic:3' TGTTGTTTT--AGTGTTCAGAAGGT 5'& ||||.|| | | |.||.|| &5' --AACAGAAACTTGCTT-TTTTTCA 3' Copb2 mmu-miR-876-5p beg:60 end:80 pic:3' ATCACTAAGTGTCT------CTTTAGGT 5'& | |||| ||||||| &5' --------C-CAGAACTTTGGAAATCC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Copb2 RAID00840561 mmu-miR-291a-3p miRNA MIMAT0000368 Copb2 mRNA 50797 Prediction 0.1828 Copb2 RAID01220038 mmu-miR-6991-5p miRNA MIMAT0027884 Copb2 mRNA 50797 Prediction 0.1828 Copb2 RAID01778066 mmu-miR-216b-5p miRNA MIMAT0003729 Copb2 mRNA 50797 Prediction 0.1828 Copb2 RAID01810443 mmu-miR-876-5p miRNA MIMAT0004854 Copb2 mRNA 50797 Prediction 0.1828 Copb2 RAID01888820 mmu-miR-133b-5p miRNA MIMAT0017083 Copb2 mRNA 50797 Prediction 0.1828 Copb2 RAID02263571 mmu-miR-344-3p miRNA MIMAT0000593 Copb2 mRNA 50797 Prediction 0.1828 Copb2 RAID03317869 mmu-miR-294-3p miRNA MIMAT0000372 Copb2 mRNA 50797 Prediction 0.1828 Copb2 RAID03354170 mmu-miR-344c-3p miRNA MIMAT0014928 Copb2 mRNA 50797 Prediction 0.1828 Copb2 RAID03912595 mmu-miR-216a-5p miRNA MIMAT0000662 Copb2 mRNA 50797 Prediction 0.1828