DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Nck1 ATTTA 78-1211 1806-1810;1837-1841;1980-1984;2088-2092;2135-2139;2505-2509;2576-2580;4253-4257 Nck1 WWATTTAWW 78-1211 1804-1812;2574-2582 Nck1 WWWATTTAWWW 78-1211 2573-2583

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT010877 mmu-miR-324-3p Mus musculus Nck1 17973 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 17973 Nck1 cgacguuuguaggcuGACUUUc |||||| ugaagguuuuguauuCUGAAAc 2 8 254 275 [mm9:9:100395621-100395642:-] 0.5291 120 6 -7.45 -0.1386 MIMAT0000137 mmu-miR-126-5p 17973 Nck1 gcGCA-UGGUUU-UCAUUAUUAc :|| ||:||| || |||||| ucUGUGACUAAAUAGCAAUAAUa 2 20 433 455 [mm9:9:100395441-100395463:-] 0.6266 137 6 -11.69 -0.3453 MIMAT0000143 mmu-miR-9* 17973 Nck1 ugaaaGCCAAUAGAUCGAAAUa | ||| ||||||| agugaCUGUUCCACAGCUUUAa 2 18 15 36 [mm9:9:100395860-100395881:-] 0.5828 145 7 -7.03 -1.1591 MIMAT0004533 mmu-miR-141* 17973 Nck1 agGUUGU-GACGUG-ACCUUCUac ||| | || :|: ||||||| uuCAAAAUCUUUAUAUGGAAGAau 3 21 287 310 [mm9:9:100395586-100395609:-] 0.5393 138 0 -14.75 -0.1212 MIMAT0000154 mmu-miR-142-5p 17973 Nck1 ucaucacgaaagauGAAAUAc |||||| auuugguucaaaauCUUUAUa 2 8 281 301 [mm9:9:100395595-100395615:-] 0.5291 120 6 -5.61 -0.1699 MIMAT0004537 mmu-miR-154* 17973 Nck1 uuauccaguuggcacAUACUAa |||||| uauaucuauauggcaUAUGAUa 2 8 382 403 [mm9:9:100395493-100395514:-] 0.6090 120 6 -5.84 -0.1042 MIMAT0000249 mmu-miR-30e* 17973 Nck1 cgacauuuguaggcuGACUUUc |||||| ugaagguuuuguauuCUGAAAc 2 8 254 275 [mm9:9:100395621-100395642:-] 0.5291 120 6 -7.79 -0.1386 MIMAT0004578 mmu-miR-300* 17973 Nck1 uguuuccUAUUGGAGAGAAGUu |||::: ||||||| uucucccAUAGUUCCUCUUCAc 2 16 353 374 [mm9:9:100395522-100395543:-] 0.5495 155 7 -11.77 -0.9120 MIMAT0004616 mmu-miR-30c-1* 17973 Nck1 ccuCAUUUGU-UGGG---AGAGGGUc ||||| | |:|| ||||||| cuuGUAAAGAUAUCCUGUUCUCCCAu 2 20 336 361 [mm9:9:100395535-100395560:-] 0.5495 157 7 -18.21 -1.0812 MIMAT0005438 mmu-miR-30c-2* 17973 Nck1 ucuCAUU--UGUCGG--AAGAGGGUc |||| |:| || |||||||| cuuGUAAAGAUAUCCUGUUCUCCCAu 2 20 336 361 [mm9:9:100395535-100395560:-] 0.5495 157 7 -17.33 -1.0812 MIMAT0004628 mmu-miR-21* 17973 Nck1 cugUCGGGUAGCUGACGACAAc | ::| |: |:||||||| aagAAUUCUUUUAUUGCUGUUu 2 20 305 326 [mm9:9:100395570-100395591:-] 0.5495 155 7 -11.97 -1.1955 MIMAT0004628 mmu-miR-21* 17973 Nck1 cuguCGGGUAGCUGACGACAAc ||::: | ||||||| acuuGCUUGGAAAGUGCUGUUu 2 19 80 101 [mm9:9:100395795-100395816:-] 0.5848 146 7 -12.67 -0.6995 MIMAT0004628 mmu-miR-21* 17973 Nck1 cugucggguagcuGACGACAAc :||||||| cuuacuguuuucuUUGCUGUUu 2 10 213 234 [mm9:9:100395662-100395683:-] 0.5639 141 7 -13.25 -1.1606 MIMAT0004628 mmu-miR-21* 17973 Nck1 cuguCGGGUAGCUG--AC-GACAAc ||:|:|| :| || ||||| uaguGCUCGUCAGCAGUGACUGUUc 2 19 1 25 [mm9:9:100395871-100395895:-] 0.6595 121 0 -16.83 -0.9136 MIMAT0004636 mmu-miR-93* 17973 Nck1 gcccuUCACGAUCGAGUCGUCa |||||| | ||||||| ----uAGUGCUCG-UCAGCAGu 2 18 1 17 [mm9:9:100395879-100395895:-] 0.6595 163 7 -22.10 -1.2131 MIMAT0000556 mmu-miR-324-3p 17973 Nck1 ucgucguggacccCGUCACc |||||| -uagugcucgucaGCAGUGa 2 8 1 19 [mm9:9:100395877-100395895:-] 0.6595 120 6 -12.98 -0.1382 MIMAT0000556 mmu-miR-324-3p 17973 Nck1 ucgucguggacccCGUCACc |||||| auauacuacauauGCAGUGc 2 8 163 182 [mm9:9:100395714-100395733:-] 0.6223 120 6 -9.99 -0.1348 MIMAT0004640 mmu-miR-325 17973 Nck1 aacuauccuccacgaGUUAUUu |||||| ucugugacuaaauagCAAUAAu 2 8 433 454 [mm9:9:100395442-100395463:-] 0.6266 120 6 -4.31 -0.3645 MIMAT0000578 mmu-miR-337-3p 17973 Nck1 uccgUAGUAUAU---CCUC-GACUu :||||:|| |||| |||| acugGUCAUGUAACUGGAGACUGAg 2 18 36 60 [mm9:9:100395836-100395860:-] 0.5838 124 0 -19.07 -0.5596 MIMAT0004670 mmu-miR-7a* 17973 Nck1 auaccgucugacacuAAACAAc |||||| uaauacaugaguauuUUUGUUa 2 8 124 145 [mm9:9:100395751-100395772:-] 0.6035 120 6 -4.56 -0.2579 MIMAT0000745 mmu-miR-380-3p 17973 Nck1 uucUACACCUGGUAUGAUGUAu || | | :||||||||| cccAUACGUA-UAUACUACAUa 2 20 154 174 [mm9:9:100395722-100395742:-] 0.6223 153 7 -13.70 -1.2649 MIMAT0001422 mmu-miR-434-3p 17973 Nck1 ucCUCAGCUCACU--ACCAAGUUu || ||| | | |||||||| cuGAAACGAAUAAUUUGGUUCAAa 2 21 269 292 [mm9:9:100395604-100395627:-] 0.5291 155 7 -15.16 -1.2667 MIMAT0002105 mmu-miR-464 17973 Nck1 auagagugucuuauuuGAACCAu |||||| agaagaguucuuuauuCUUGGUc 2 8 191 213 [mm9:9:100395683-100395705:-] 0.5987 120 6 -10.13 -0.2137 MIMAT0002106 mmu-miR-465a-5p 17973 Nck1 agugUAGUCACGGUA-AGAUUUAu ||| | |::| |||||| guuaAUCUUUUCUGUGACUAAAUa 2 20 423 446 [mm9:9:100395450-100395473:-] 0.6266 122 6 -10.56 -0.1545 MIMAT0002109 mmu-miR-468 17973 Nck1 gucUGUGUG-CGUGUA-GUCA-GUAu |:|:|| ||:|| |||| ||| cguAUAUACUACAUAUGCAGUGCAUc 2 21 160 185 [mm9:9:100395711-100395736:-] 0.6223 126 0 -15.80 -0.8759 MIMAT0003892 mmu-miR-762 17973 Nck1 cgAGACAGGGCCGGGGUCGGGg |:|||: : |:|||||| uuUUUGUUAU-AACUCAGCCCa 2 21 137 157 [mm9:9:100395739-100395759:-] 0.6035 134 6 -22.82 -0.2413 MIMAT0004188 mmu-miR-802 17973 Nck1 uuccuACUUAGAA--ACAAUGACu | | |||| | |||||| guucuUUAUUCUUGGUCUUACUGu 2 18 197 220 [mm9:9:100395676-100395699:-] 0.5987 124 6 -8.24 -0.1112 MIMAT0003739 mmu-miR-673-5p 17973 Nck1 gagguuccuggucucGACACUc |||||| aaguguuaaucuuuuCUGUGAc 2 8 419 440 [mm9:9:100395456-100395477:-] 0.6266 120 6 -8.53 -0.3149 MIMAT0003461 mmu-miR-683 17973 Nck1 cuccugugucgaauGUCGUCc |||||| ----uagugcucguCAGCAGu 2 8 1 17 [mm9:9:100395879-100395895:-] 0.6595 120 6 -11.38 -0.1548 MIMAT0003488 mmu-miR-698 17973 Nck1 ucccUUCCUUUGCUCUUAc || | |:|||||| uucuAACUAUAUGAGAAUu 2 16 100 118 [mm9:9:100395778-100395796:-] 0.5848 135 6 -7.82 -0.1311 MIMAT0003493 mmu-miR-703 17973 Nck1 aaGAAAGGAAG------ACUUCCAAAa ||||||||| ||||||||| cuCUUUCCUUCCAACAAUGAAGGUUUu 2 20 237 263 [mm9:9:100395633-100395659:-] 0.5291 166 7 -25.56 -0.5663 MIMAT0003495 mmu-miR-705 17973 Nck1 acggGUGGGGU-GGAGGGUGg :|:||:: :||||||: aagaUAUCCUGUUCUCCCAUa 2 17 342 362 [mm9:9:100395534-100395554:-] 0.5495 135 0 -20.84 -0.1393 MIMAT0003496 mmu-miR-706 17973 Nck1 aaaAAACUCU-GUCCCAAAGAga || || | :: |||||| ugcUUGGAAAGUGCUGUUUCUaa 3 20 83 105 [mm9:9:100395791-100395813:-] 0.5848 126 0 -8.82 -0.1014 MIMAT0003504 mmu-miR-713 17973 Nck1 cgacacacggaaGUCACGu |||||| auacuacauaugCAGUGCa 2 8 165 183 [mm9:9:100395713-100395731:-] 0.6223 120 6 -11.88 -0.2485 MIMAT0003505 mmu-miR-714 17973 Nck1 cgcuggcuggccggGAGCAGc |||||| ---------uagugCUCGUCa 2 8 1 12 [mm9:9:100395884-100395895:-] 0.6595 120 6 -14.38 -0.1064 MIMAT0003508 mmu-miR-501-5p 17973 Nck1 aaaguggguccCUGUUUCCUaa ||:|||||| auauggcauauGAUAAAGGAca 3 12 389 410 [mm9:9:100395486-100395507:-] 0.6090 131 0 -12.02 -0.2183 MIMAT0004839 mmu-miR-743b-5p 17973 Nck1 acuaccugugGUCAGACUUgu :| |||||| gaagguuuugUAUUCUGAAac 3 12 255 275 [mm9:9:100395621-100395641:-] 0.5291 123 0 -8.75 -0.1137 MIMAT0004841 mmu-miR-871 17973 Nck1 guACUGACCGUG-AUUAGACUUau ||| | : : || |||||| aaUGAAGGUUUUGUAUUCUGAAac 3 22 252 275 [mm9:9:100395621-100395644:-] 0.5291 128 0 -13.84 -0.1115 MIMAT0004848 mmu-miR-883a-5p 17973 Nck1 cauUGACGAUGA-AGAGAGUCGu |:| :|::| | |||||| aguAUUUUUGUUAUAACUCAGCc 2 20 133 155 [mm9:9:100395741-100395763:-] 0.6035 122 6 -15.77 -0.1367 MIMAT0004849 mmu-miR-883a-3p 17973 Nck1 uaugacucucgacaACGUCAau |||||| guauauacuacauaUGCAGUgc 3 9 161 182 [mm9:9:100395714-100395735:-] 0.6223 120 0 -8.08 -0.1116 MIMAT0004851 mmu-miR-883b-3p 17973 Nck1 uaugacucucuacaACGUCAau |||||| guauauacuacauaUGCAGUgc 3 9 161 182 [mm9:9:100395714-100395735:-] 0.6223 120 0 -8.08 -0.1105 MIMAT0004871 mmu-miR-465b-5p 17973 Nck1 gucuagucgugguaaGAUUUAu |||||| uaaucuuuucugugaCUAAAUa 2 8 425 446 [mm9:9:100395450-100395471:-] 0.6266 120 6 -7.85 -0.1575 MIMAT0004873 mmu-miR-465c-5p 17973 Nck1 gucuagucgcgguaaGAUUUAu |||||| uaaucuuuucugugaCUAAAUa 2 8 425 446 [mm9:9:100395450-100395471:-] 0.6266 120 6 -8.84 -0.1575 MIMAT0004935 mmu-miR-872* 17973 Nck1 uccuccgAUGACGUUAUCAAGu | || | ||||||| uauccugUUCUCCCAUAGUUCc 2 16 346 367 [mm9:9:100395529-100395550:-] 0.5495 151 7 -8.73 -0.3875 MIMAT0005838 mmu-miR-669j 17973 Nck1 acaaacguacacucaUAUACGu |||||| auacguauauacuacAUAUGCa 2 8 157 178 [mm9:9:100395718-100395739:-] 0.6223 120 6 -7.71 -0.1133 MIMAT0005838 mmu-miR-669j 17973 Nck1 acaaacguacacucAUAUACgu |||||| ugguucaaaaucuuUAUAUGga 3 9 284 305 [mm9:9:100395591-100395612:-] 0.5393 120 0 -4.62 -0.1166 MIMAT0005838 mmu-miR-669j 17973 Nck1 acaaacguacacucAUAUACgu |||||| cauaaaauuauaucUAUAUGgc 3 9 374 395 [mm9:9:100395501-100395522:-] 0.6090 120 0 -4.87 -0.1298 MIMAT0005839 mmu-miR-669f 17973 Nck1 uaugcacacacacauaCAUAUAc |||||| auaacucagcccauacGUAUAUa 2 8 145 167 [mm9:9:100395729-100395751:-] 0.6223 120 6 -3.61 -0.1650 MIMAT0005840 mmu-miR-669i 17973 Nck1 cauacguACACACAUAUACgu | | | |||||| auaaaauUAUAUCUAUAUGgc 3 15 375 395 [mm9:9:100395501-100395521:-] 0.6090 126 0 -4.74 -0.1298 MIMAT0005840 mmu-miR-669i 17973 Nck1 cauacguacACACAUAUACgu | | |||||| gguucaaaaUCUUUAUAUGga 3 13 285 305 [mm9:9:100395591-100395611:-] 0.5393 124 0 -4.41 -0.1166 MIMAT0005840 mmu-miR-669i 17973 Nck1 cauacguacacacaUAUACGu |||||| uacguauauacuacAUAUGCa 2 8 158 178 [mm9:9:100395718-100395738:-] 0.6223 120 6 -7.71 -0.1133 MIMAT0005842 mmu-miR-669h-3p 17973 Nck1 acacguACACACAUAUA-CGUAu | | | ||||| |||| uaaaauUAUAUCUAUAUGGCAUa 2 17 376 398 [mm9:9:100395498-100395520:-] 0.6090 120 0 -6.80 -1.2612 MIMAT0005860 mmu-miR-1199 17973 Nck1 ggcgcgcuggcccUGAGUCu |||||| uauuuuuguuauaACUCAGc 2 8 135 154 [mm9:9:100395742-100395761:-] 0.6035 120 6 -12.41 -0.1066 MIMAT0009405 mmu-miR-1941-5p 17973 Nck1 uucggagacauggucguAGAGGGa |||||| uuguaaagauauccuguUCUCCCa 2 8 337 360 [mm9:9:100395536-100395559:-] 0.5495 120 6 -14.97 -0.1011 MIMAT0009431 mmu-miR-1958 17973 Nck1 ugAAUGAC-GAAGGUGAAAGGAu ||:||| :||:| ||||||| cuUUGCUGUUUUUCUCUUUCCUu 2 21 224 246 [mm9:9:100395650-100395672:-] 0.5639 171 7 -22.03 -0.9307 MIMAT0009431 mmu-miR-1958 17973 Nck1 ugAAUGACGAAG-GUGAAAGGAu ||:|||:||| : |||||| uaUUGCUGUUUCUUUAUUUCCUu 2 21 316 338 [mm9:9:100395558-100395580:-] 0.5495 139 6 -21.58 -0.1011 MIMAT0011287 mmu-miR-2183 17973 Nck1 uccuccaguccCCAAGUu |||||| acgaauaauuuGGUUCAa 2 8 274 291 [mm9:9:100395605-100395622:-] 0.5291 120 6 -8.53 -0.2714 MIMAT0000126 mmu-miR-27b 17973 Nck1 cgucuugaaucgguGACACUu |||||| aguguuaaucuuuuCUGUGAc 2 8 420 440 [mm9:9:100395456-100395476:-] 0.6266 120 6 -8.68 -0.3045 MIMAT0000133 mmu-miR-101a 17973 Nck1 aagucAAUAGU-GUCA-UGACAu | :||| |||| ||||| agugcUCGUCAGCAGUGACUGUu 2 17 2 24 [mm9:9:100395872-100395894:-] 0.6595 123 0 -15.03 -0.8080 MIMAT0000144 mmu-miR-132 17973 Nck1 gcugguacCGACAUCUGACAAu || || ||||||| gcucgucaGCAGU-GACUGUUc 2 15 5 25 [mm9:9:100395871-100395891:-] 0.6595 148 7 -14.03 -0.8677 MIMAT0000149 mmu-miR-137 17973 Nck1 gaugcgcauaagaauUCGUUAUu ||||||| uuucugugacuaaauAGCAAUAa 2 9 431 453 [mm9:9:100395443-100395465:-] 0.6266 140 7 -12.57 -1.3247 MIMAT0000153 mmu-miR-141 17973 Nck1 gguaGAAAUGGUCUGUCACAAu | || ::: | |||||| aggaCAUUCUUGUAAAGUGUUa 2 19 405 426 [mm9:9:100395470-100395491:-] 0.6090 122 6 -12.09 -0.2279 MIMAT0000157 mmu-miR-145 17973 Nck1 ucccuaagGACCCUU---UUGACCUg |||| | ||||||| agcuuuaaCUGGUCAUGUAACUGGAg 2 16 29 54 [mm9:9:100395842-100395867:-] 0.5838 142 7 -15.70 -0.4028 MIMAT0000215 mmu-miR-186 17973 Nck1 ucGGGUUUUCC-UCUUAAGAAAc :::| | || |||||||||| ucUUUAUAUGGAAGAAUUCUUUu 2 21 294 316 [mm9:9:100395580-100395602:-] 0.5393 163 7 -13.55 -1.0480 MIMAT0000215 mmu-miR-186 17973 Nck1 ucGGGUUUUCCUCUUAAGAAAc |:| | || |||:|||||| auCUCUAUAGAAGAGUUCUUUa 2 21 183 204 [mm9:9:100395692-100395713:-] 0.6105 156 6 -15.53 -0.1779 MIMAT0000233 mmu-miR-200b 17973 Nck1 aguaguaaugguccgUCAUAAu |||||| ugacuauaauacaugAGUAUUu 2 8 118 139 [mm9:9:100395757-100395778:-] 0.5848 120 6 -5.40 -0.1413 MIMAT0000238 mmu-miR-205 17973 Nck1 gucugaggccaccUUACUUCCu |||||||| cuuuccuuccaacAAUGAAGGu 2 10 239 260 [mm9:9:100395636-100395657:-] 0.5291 145 7 -13.66 -0.8008 MIMAT0000519 mmu-miR-200a 17973 Nck1 uguaGCAAUGGUCUGUCACAAu | || ::: | |||||| aggaCAUUCUUGUAAAGUGUUa 2 19 405 426 [mm9:9:100395470-100395491:-] 0.6090 122 6 -12.42 -0.2279 MIMAT0000520 mmu-miR-208a 17973 Nck1 uguucGAAA-AACGAGCAGAAUa |||| || :| |||||| gaguuCUUUAUUCUUGGUCUUAc 2 18 195 217 [mm9:9:100395679-100395701:-] 0.5987 132 6 -9.90 -0.1361 MIMAT0000537 mmu-miR-27a 17973 Nck1 cgccuugaaucgguGACACUu |||||| aguguuaaucuuuuCUGUGAc 2 8 420 440 [mm9:9:100395456-100395476:-] 0.6266 120 6 -10.12 -0.3045 MIMAT0004651 mmu-miR-340-5p 17973 Nck1 uuAGUCAGAGUAACGAAAUAUu |::||: | ||||||| auUUGGUUCAAAAUCUUUAUAu 2 21 281 302 [mm9:9:100395594-100395615:-] 0.5291 148 7 -7.00 -1.0244 MIMAT0000616 mmu-miR-101b 17973 Nck1 aaguCGA-UAGU-GUCA-UGACAu ||| :||| |||| ||||| uaguGCUCGUCAGCAGUGACUGUu 2 18 1 24 [mm9:9:100395872-100395895:-] 0.6595 127 0 -17.55 -0.8152 MIMAT0000657 mmu-miR-200c 17973 Nck1 agguaguaaugggccgUCAUAAu |||||| uugacuauaauacaugAGUAUUu 2 8 117 139 [mm9:9:100395757-100395779:-] 0.5848 120 6 -10.37 -0.1413 MIMAT0000659 mmu-miR-212 17973 Nck1 accGGCACUGACCUCUGACAAu :||| | | ||||||| ugcUCGUCAGCAGUGACUGUUc 2 20 4 25 [mm9:9:100395871-100395892:-] 0.6595 151 7 -13.60 -0.8908 MIMAT0000666 mmu-miR-320 17973 Nck1 agCGGGAGAGUUGGGUCGAAAa | |: :|| | ||||||| guGACUGUUC--CACAGCUUUa 2 21 16 35 [mm9:9:100395861-100395880:-] 0.5828 145 7 -13.85 -1.2222 MIMAT0000671 mmu-miR-224 17973 Nck1 uugccUUGGUGA--UCACUGAau ||:| :| |||||| guguuAAUCUUUUCUGUGACUaa 3 17 421 443 [mm9:9:100395453-100395475:-] 0.6266 123 0 -10.56 -0.4360 MIMAT0000679 mmu-miR-217 17973 Nck1 aggucaGUCAAGGACUACGUCAu :| | | | ||||||| cguauaUACUACAU-AUGCAGUg 2 18 160 181 [mm9:9:100395715-100395736:-] 0.6223 143 7 -11.82 -0.9000 MIMAT0000746 mmu-miR-381 17973 Nck1 ugUCUCUCGAACGGGAACAUau | ||: | | :|||||| auAAAGGACAU--UCUUGUAaa 3 21 401 420 [mm9:9:100395476-100395495:-] 0.6090 125 0 -8.45 -0.1687 MIMAT0001091 mmu-miR-410 17973 Nck1 uguccgguagacacAAUAUAa |||||| cucuucacauaaaaUUAUAUc 2 8 367 387 [mm9:9:100395509-100395529:-] 0.5792 120 6 -4.07 -0.1748 MIMAT0001533 mmu-miR-448 17973 Nck1 uacCCUGUAGGAUGUAUACGUu | |:|| ||||||||||| uacGUAUAUACUACAUAUGCAg 2 20 158 179 [mm9:9:100395717-100395738:-] 0.6223 175 7 -20.56 -0.6304 MIMAT0001537 mmu-miR-429 17973 Nck1 ugccguaauggucugUCAUAAu |||||| ugacuauaauacaugAGUAUUu 2 8 118 139 [mm9:9:100395757-100395778:-] 0.5848 120 6 -5.96 -0.1413 MIMAT0003182 mmu-miR-494 17973 Nck1 cuccaaagggcacauACAAAGu |||||| gaauucuuuuauugcUGUUUCu 2 8 307 328 [mm9:9:100395568-100395589:-] 0.5495 120 6 -5.93 -0.1261 MIMAT0003727 mmu-miR-374 17973 Nck1 gugaaucguccaacaUAAUAUa |||||| uccucuucacauaaaAUUAUAu 2 8 365 386 [mm9:9:100395510-100395531:-] 0.5792 120 6 -4.82 -0.1025 MIMAT0003456 mmu-miR-495 17973 Nck1 uucuucACGUGGUACAAACAAa || | :|| |||||| aauacaUG-AGUAUUUUUGUUa 2 17 125 145 [mm9:9:100395751-100395771:-] 0.6035 122 6 -5.31 -0.2602 MIMAT0003482 mmu-miR-499 17973 Nck1 uuuGUAGUGACGUUCAGAAUu | |:|:| : :|||||| guuCUUUAUUCUUGGUCUUAc 2 19 197 217 [mm9:9:100395679-100395699:-] 0.5987 138 6 -7.66 -0.1401 MIMAT0004896 mmu-miR-590-3p 17973 Nck1 ugaucGAAUAUGUAUUUUAAu ||| |||||||||| uuccuCUU-CACAUAAAAUUa 2 17 364 383 [mm9:9:100395513-100395532:-] 0.5792 158 7 -10.85 -1.2139 MIMAT0004939 mmu-miR-208b 17973 Nck1 uguuuGGAA-AACAAGCAGAAUa |:|| || || |||||| gaguuCUUUAUUCUUGGUCUUAc 2 18 195 217 [mm9:9:100395679-100395701:-] 0.5987 132 6 -9.11 -0.1388 MIMAT0005850 mmu-miR-1192 17973 Nck1 uuaaaccagacaaacAAACAAa |||||| uaauacaugaguauuUUUGUUa 2 8 124 145 [mm9:9:100395751-100395772:-] 0.6035 120 6 -4.45 -0.2602

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G009506 Nck1 Mus musculus 17973 19536157 0 0 R55264; MOUSE$NCK1_01; Binding factors: mmu-miR-153-3p , mmu-miR-448-3p // 0 0 R55265; MOUSE$NCK1_02; Binding factors: mmu-miR-125a-5p , mmu-miR-125b-5p , mmu-miR-351-5p // 0 0 R55270; MOUSE$NCK1_03; Binding factors: mmu-let-7a-5p , mmu-let-7b-5p , mmu-let-7c-5p , mmu-let-7e-5p , mmu-let-7f-5p , mmu-let-7g-5p , mmu-let-7i-5p , mmu-miR-672-5p , mmu-miR-98-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Nck1 mmu-miR-205 beg:242 end:260 pic:3' GTCTGAGGCCACCTTACTTCCT 5'& .||| |||||||| &5' ----TTCCAAC--AATGAAGG- 3' Nck1 mmu-miR-186 beg:300 end:316 pic:3' TCGGGTTTTCC-TCTTAAGAAAC 5'& || |||||||||| &5' ---------GGAAGAATTCTTT- 3' Nck1 mcmv-miR-m01-1 beg:222 end:243 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& ||.| .||| |||||.|. &5' ---TTTGCTGTTTTTCTCTTT- 3' Nck1 mcmv-miR-m01-3star beg:347 end:370 pic:3' CGGCACTTCGCTCGCAAGGAGC 5'& |.|| ||||||| &5' -CTGTTCTCCCATAGTTCCTC- 3' Nck1 mcmv-miR-m107-1-5p beg:0 end:23 pic:3' CCACTGAGCTC-TGCTCACTGGC 5'& ||| |||| .| ||||||.| &5' -GTG-CTCGTCAGC-AGTGACTG 3' Nck1 mcmv-miR-m108-2-5p.1 beg:0 end:24 pic:3' GCCACGAGCGCAGC-TCACTGGCG 5'& |||||||. | ||||||.|. &5' --GTGCTCGTCA-GCAGTGACTGT 3' Nck1 mmu-miR-105 beg:384 end:408 pic:3' TGGTGT-TCGTAGACTCGTGAACC 5'& |.|.| .|||| ||| .| || &5' -CTATATGGCATATGA-TAAA-GG 3' Nck1 mmu-miR-132 beg:5 end:25 pic:3' GCTGGTAC-CGACATCTGACAAT 5'& .|.| || || ||||||| &5' ---TCGTCAGCAGT-GACTGTT- 3' Nck1 mmu-miR-143 beg:317 end:336 pic:3' CTCGATGTCACGAAGTAGAGT 5'& |||. |||.||.|| &5' --GCTGTTT--CTTTATTTC- 3' Nck1 mmu-miR-146a beg:183 end:203 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& .|.|| ||| ||||||. &5' --TCTATAGAAG--AGTTCTT- 3' Nck1 mmu-miR-146b beg:183 end:203 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& .|||| ||| ||||||. &5' --TCTATAGAAG--AGTTCTT- 3' Nck1 mmu-miR-150star beg:18 end:41 pic:3' GATAGGGGGTCCGGACATGGTC 5'& ||.|.|| || ||.| || | &5' CTGTTCCACA-GCTTTAACTGG 3' Nck1 mmu-miR-15a beg:90 end:101 pic:3' GTGTTTGGTAATACACGACGAT 5'& ||||||.| &5' -------------GTGCTGTT- 3' Nck1 mmu-miR-15b beg:90 end:101 pic:3' ACATTTGGTACTACACGACGAT 5'& ||||||.| &5' -------------GTGCTGTT- 3' Nck1 mmu-miR-16 beg:311 end:326 pic:3' GCGGTTATAAATGCACGACGAT 5'& ||||. |||||.| &5' --------TTTAT-TGCTGTT- 3' Nck1 mmu-miR-16 beg:81 end:101 pic:3' GCGGTTATAAATGCACGACGAT 5'& ||. ||||||.| &5' -GCTTGGAAA---GTGCTGTT- 3' Nck1 mmu-miR-1902 beg:170 end:189 pic:3' TTCAGTACGGATGACGTGGAGA 5'& .|||| ||||.|||| &5' ----TATGCAG--TGCATCTCT 3' Nck1 mmu-miR-195 beg:90 end:101 pic:3' CGGTTATAAAGACACGACGAT 5'& ||||||.| &5' ------------GTGCTGTT- 3' Nck1 mmu-miR-195 beg:218 end:234 pic:3' CGGTTATAAAGACACGACGAT 5'& ||||| |||||.| &5' -------TTTCTTTGCTGTT- 3' Nck1 mmu-miR-1958 beg:225 end:246 pic:3' TGAATGACGAAGGT-GAAAGGAT 5'& ||.|||.||.. ||||||| &5' --TTGCTGTTTTTCTCTTTCCT- 3' Nck1 mmu-miR-214 beg:214 end:233 pic:3' TGACGGACAGACACGGACGACA 5'& ||||.| ..|||||| &5' -----CTGTTTTC-TTTGCTGT 3' Nck1 mmu-miR-21star beg:81 end:101 pic:3' CTGTCGGGTAGCTGACGACAAC 5'& ||... | ||||||| &5' ----GCTTGGAAAGTGCTGTT- 3' Nck1 mmu-miR-24 beg:41 end:75 pic:3' GACAAGGAC----GACT------TGACTCGGT 5'& ||| ||| |||| .|||.|||| &5' -TGTAACTGGAGACTGAGAAAGTGCTGGGCCA 3' Nck1 mmu-miR-302b beg:117 end:140 pic:3' GATGATTT--TGTACCTTCGTGAAT 5'& |||| ||||| ||.|.|| &5' --ACTATAATACATG--AGTATTT- 3' Nck1 mmu-miR-30astar beg:41 end:62 pic:3' CGACGTTTGTAGGCTGACTTTC 5'& ||. ||| ||||||.| &5' --TGT-AACTGGAGACTGAGA- 3' Nck1 mmu-miR-30c-1star beg:340 end:361 pic:3' CCTCATTTGTTGGG--AGAGGGTC 5'& |.|.| ||. ||||||| &5' -----AGATATCCTGTTCTCCCA- 3' Nck1 mmu-miR-30c-2star beg:340 end:361 pic:3' TCTCATTTGTCGGA--AGAGGGTC 5'& |.|.| ||| ||||||| &5' -----AGATATCCTGTTCTCCCA- 3' Nck1 mmu-miR-30estar beg:41 end:62 pic:3' CGACATTTGTAGGCTGACTTTC 5'& ||| ||| ||||||.| &5' --TGT-AACTGGAGACTGAGA- 3' Nck1 mmu-miR-320 beg:13 end:35 pic:3' AGCGG-GAGAGTTGG-GTCGAAAA 5'& |. || |. || ||||||| &5' --GTGACTGTT--CCACAGCTTT- 3' Nck1 mmu-miR-328 beg:57 end:75 pic:3' TGCCTTCCCGTCTCTCCCGGTC 5'& | ||| || |||||| &5' --GAAAGTGCT----GGGCCA- 3' Nck1 mmu-miR-434-3p beg:272 end:293 pic:3' TCCTCAGCTCACT--ACCAAGTTT 5'& ||| ||||||||| &5' ------CGAATAATTTGGTTCAAA 3' Nck1 mmu-miR-448 beg:158 end:180 pic:3' TACCCTGTAGGATGTATACGTT 5'& | |.|| |||||||||||. &5' ---GTATATACTACATATGCAG 3' Nck1 mmu-miR-450b-5p beg:402 end:422 pic:3' ATAAGTCCTTGTAT-GACGTTTT 5'& ||| |||| .||.|||. &5' -----AGG-ACATTCTTGTAAAG 3' Nck1 mmu-miR-455star beg:383 end:401 pic:3' GCTACATCAGGTTT-CCGTGTAT 5'& ||.| ||||.||. &5' --------TCTATATGGCATATG 3' Nck1 mmu-miR-464 beg:266 end:288 pic:3' ATAGAGTGT-CTTATTTGAACCAT 5'& ||| | |||| ||.||||| &5' --TCTGAAACGAAT-AATTTGGT- 3' Nck1 mmu-miR-497 beg:90 end:101 pic:3' ATGTTTGGTGTCACACGACGAC 5'& ||||||.| &5' -------------GTGCTGTT- 3' Nck1 mmu-miR-669g beg:165 end:184 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& | |||.||.||.|||| &5' -------CTACATATGCAGTGCA 3' Nck1 mmu-miR-703 beg:243 end:264 pic:3' AAGAAAGGAAG--ACTTCCAAAA 5'& |||| |||||||||| &5' ----TTCCAACAATGAAGGTTTT 3' Nck1 mmu-miR-713 beg:174 end:184 pic:3' CGACACACGGAAGTCACGT 5'& ||||||| &5' ------------CAGTGCA 3' Nck1 mmu-miR-743b-3p beg:216 end:238 pic:3' AGATAAGTCGTACTACAGAAAG 5'& ||.||. || |||.|||| &5' -CTGTTTTCTTTGCTGTTTTTC 3' Nck1 mmu-miR-881star beg:225 end:243 pic:3' TCTACACTGACAAT-AGAGAGAC 5'& .||||| |||||.| &5' -------GCTGTTTTTCTCTTT- 3' Nck1 mmu-miR-93star beg:0 end:18 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& |||||| | |||||||| &5' -----AGTGCTCG-TCAGCAGT 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nck1 RAID00027514 mmu-miR-208b-3p miRNA MIMAT0004939 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID00042883 mmu-miR-7048-3p miRNA MIMAT0028001 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID00159327 mmu-miR-186-5p miRNA MIMAT0000215 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID00227699 mmu-miR-340-5p miRNA MIMAT0004651 Nck1 mRNA 17973 Prediction 0.2381 Nck1 RAID00291783 mmu-miR-212-3p miRNA MIMAT0000659 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID00314627 mmu-miR-6374 miRNA MIMAT0025118 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID00322326 mmu-miR-30c-2-3p miRNA MIMAT0005438 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID00358299 mmu-miR-7678-5p miRNA MIMAT0029870 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID00533160 mmu-miR-6911-5p miRNA MIMAT0027722 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID00627920 mmu-miR-7028-5p miRNA MIMAT0027960 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID00734085 mmu-miR-1958 miRNA MIMAT0009431 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID00748470 mmu-miR-200c-3p miRNA MIMAT0000657 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID00913383 mmu-miR-496a-3p miRNA MIMAT0003738 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID00954400 mmu-miR-6983-5p miRNA MIMAT0027868 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID01140710 mmu-miR-132-3p miRNA MIMAT0000144 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID01175168 mmu-miR-1192 miRNA MIMAT0005850 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID01175408 mmu-miR-703 miRNA MIMAT0003493 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID01201090 mmu-miR-5098 miRNA MIMAT0020605 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID01276245 mmu-miR-142a-5p miRNA MIMAT0000154 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID01280636 mmu-miR-448-3p miRNA MIMAT0001533 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID01305975 mmu-miR-145a-5p miRNA MIMAT0000157 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID01311838 mmu-miR-300-5p miRNA MIMAT0004578 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID01312890 mmu-miR-101b-3p miRNA MIMAT0000616 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID01338158 mmu-miR-590-3p miRNA MIMAT0004896 Nck1 mRNA 17973 Prediction 0.2202 Nck1 RAID01381641 mmu-miR-380-3p miRNA MIMAT0000745 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID01500247 mmu-miR-6539 miRNA MIMAT0025584 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID01525890 mmu-miR-21a-3p miRNA MIMAT0004628 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID01708981 mmu-miR-200a-3p miRNA MIMAT0000519 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID01804156 mmu-miR-141-3p miRNA MIMAT0000153 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID01850422 mmu-miR-200b-3p miRNA MIMAT0000233 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID01858985 mmu-miR-494-3p miRNA MIMAT0003182 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID02025797 mmu-miR-205-5p miRNA MIMAT0000238 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID02048653 mmu-miR-324-3p miRNA MIMAT0000556 Nck1 mRNA 17973 NGS (Next Generation Sequencing) 0.5483 Nck1 RAID02050619 mmu-miR-8097 miRNA MIMAT0031399 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID02198167 mmu-miR-27b-3p miRNA MIMAT0000126 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6478 Nck1 RAID02226892 mmu-miR-429-3p miRNA MIMAT0001537 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID02421523 mmu-miR-7238-3p miRNA MIMAT0028445 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID02488383 mmu-miR-224-5p miRNA MIMAT0000671 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID02490664 mmu-miR-381-3p miRNA MIMAT0000746 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID02499635 mmu-miR-434-3p miRNA MIMAT0001422 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID02571803 mmu-miR-320-3p miRNA MIMAT0000666 Nck1 mRNA 17973 Prediction 0.2202 Nck1 RAID02591625 mmu-miR-27a-3p miRNA MIMAT0000537 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID02603734 mmu-miR-137-3p miRNA MIMAT0000149 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6592 Nck1 RAID02891408 mmu-miR-7662-5p miRNA MIMAT0029830 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID02897624 mmu-miR-217-5p miRNA MIMAT0000679 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6478 Nck1 RAID02911926 mmu-miR-499-5p miRNA MIMAT0003482 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID03012170 mmu-miR-6516-3p miRNA MIMAT0027344 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID03087173 mmu-miR-30c-1-3p miRNA MIMAT0004616 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID03257253 mmu-miR-101a-3p miRNA MIMAT0000133 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID03375227 mmu-miR-935 miRNA MIMAT0035718 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID03375308 mmu-miR-410-3p miRNA MIMAT0001091 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID03396632 mmu-miR-6958-5p miRNA MIMAT0027816 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID03434563 mmu-miR-298-3p miRNA MIMAT0017007 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID03643148 mmu-miR-7079-5p miRNA MIMAT0028064 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID03667412 mmu-miR-495-3p miRNA MIMAT0003456 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID03690465 mmu-miR-374b-5p miRNA MIMAT0003727 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308 Nck1 RAID03966774 mmu-miR-7077-3p miRNA MIMAT0028061 Nck1 mRNA 17973 Prediction 0.1828 Nck1 RAID04043678 mmu-miR-208a-3p miRNA MIMAT0000520 Nck1 mRNA 17973 CLIP-seq//Prediction 0.6308