DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0007878 mmu-miR-1894-3p 66663 Uba5 gaGGGA--AGUGGGA-GAGGGAACg |:|| |:|: || ||||||| uuCUCUGCUUAUGCUAGUCCCUUGg 2 21 25 49 [mm9:9:103949884-103949908:-] 0.5102 150 7 -22.46 -0.5628

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G057028 Uba5 Mus musculus 66663

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ube1dc1 mmu-miR-1195 beg:0 end:23 pic:3' ACTCGTCCGACCGGAGCTTGAGT 5'& ||. |||||||.|| ||.| &5' --AGT-GGCTGGCTTCTGTCTTA 3' Ube1dc1 mmu-miR-1935 beg:4 end:21 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& || ||.||||.|| &5' --------GCTGGCTTCTGTCT 3' Ube1dc1 mmu-miR-499 beg:4 end:23 pic:3' TTTGTAGTGA-CGTT--CAGAATT 5'& .|| || |||||| &5' -------GCTGGCTTCTGTCTTA- 3' Ube1dc1 mmu-miR-671-5p beg:0 end:17 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& |||. || ||||||. &5' ---CAGTGGCT----GGCTTCT- 3' Ube1dc1 mmu-miR-1894-3p beg:30 end:49 pic:3' GAGGGAAGTGGGAG-AGGGAACG 5'& |.|. || ||||||| &5' ------TTATGCTAGTCCCTTG- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Uba5; Ube1dc1 mmu-let-7e 130 154 -UGAUAUGUU--GGAGGAUGGAGU |||| ||||||:|:|| AACUAGUGGUUUCCUCCUGCUUCC Uba5; Ube1dc1 mmu-let-7f 317 345 -UGAUAUGUUA------GAUGAUG-GAGU |||: |||:| ||||||| || UACUGGACAGUUACUCACUACUACUCUG- Uba5; Ube1dc1 mmu-let-7g 317 345 -UGACAUGUU------UGAUGAUG-GAGU |||| |||: |||||||| || UACUGGACAGUUACUCACUACUACUCUG- Uba5; Ube1dc1 mmu-let-7i 322 345 -UGUC-GUGUUUGAUGAUG-GAGU |||| :|| |||||||| || GACAGUUACUCACUACUACUCUG- Uba5; Ube1dc1 mmu-miR-128a 270 290 UUUUCUCUGG-CCAAGUGACACU- | |:|| ||| :|||||: ---UGUGGCCUGGUG-GCUGUGGC Uba5; Ube1dc1 mmu-miR-128b 252 290 -CUUUCU--------------CUGG-CCAAGUGACACU- |:|:|| |:|| ||| :|||||: UGGAGGAUGGACUGACUGUGUGGCCUGGUG-GCUGUGGC Uba5; Ube1dc1 mmu-miR-133a 174 205 -UGUCGACCAA-----CUUCCCC---UGGUU ||||| ||||||| |||| CACAGCGACAGAAAGAGAAGGGGUGGACCAU Uba5; Ube1dc1 mmu-miR-133b 176 205 AUCGACCAA-----CUUCCCC---UGGUU ||| ||||||| |||| CAGCGACAGAAAGAGAAGGGGUGGACCAU Uba5; Ube1dc1 mmu-miR-136 235 258 AGGUAGUAGUUUUGUUUACCUCA | || :|: |||||||||| ACGAUAAAUAGCACAAAUGGAGG Uba5; Ube1dc1 mmu-miR-140* 214 235 -AGGCACCAAGA--UGGGACACCAU ||:|||| :|:||| GUCUGUGGCCUACGGCUCUGG---- Uba5; Ube1dc1 mmu-miR-144 87 128 GAUCA--UGUA---GUAGA-------------UAUGACAU |||| :||| :|||| ||:||||: UUAGUUGGCAUGUGUAUCUUCACGGAGUUGUUAUGCUGUGU Uba5; Ube1dc1 mmu-miR-146 314 335 UUGGGU-ACCUUAAGUCAA-GAGU- ||:| |||| ||||| |||| -UCCUACUGGA---CAGUUACUCAC Uba5; Ube1dc1 mmu-miR-146b 314 335 UCGGAU-ACCUUAAGUCAA-GAGU- |||| |||| ||||| |||| -UCCUACUGGA---CAGUUACUCAC Uba5; Ube1dc1 mmu-miR-181a 285 308 UGAGUGGCUGUC-GCA-ACUUACAA | :|:||||| :|| |||:|| -GUGGCUGACAGGUGUCUGAGUGA- Uba5; Ube1dc1 mmu-miR-181c 285 308 UGAGUGGCUGUCCA---ACUUACAA | :|:||||||| |||:|| -GUGGCUGACAGGUGUCUGAGUGA- Uba5; Ube1dc1 mmu-miR-181d 272 308 -UUGGG----------UGGCUGUUGUU--ACUUACAA ::||: :|:||||: : |||:|| UGGCCUGGUGGCUGUGGCUGACAGGUGUCUGAGUGA- Uba5; Ube1dc1 mmu-miR-185 14 32 CUUGACGGA--AAGAGAGGU |||:|| ||:||||: --UCUGUCUUAUUUUCUCUG Uba5; Ube1dc1 mmu-miR-188 160 200 -UGGG--AG--GUGGUA-CGU-----------UCCCUAC- |||: || :|||| ||: ||||:|| AACCUAAUCAGUACCACAGCGACAGAAAGAGAAGGGGUGG Uba5; Ube1dc1 mmu-miR-193 259 282 GACCCUGAA--ACAU-CCGG-UCAA ||||| |||: |||| :|| --UGGACUGACUGUGUGGCCUGGUG Uba5; Ube1dc1 mmu-miR-199a* 260 289 -UUGGUU-ACACGUCUGA----UGACAU- :||::| ||||::| || :||||: GGACUGACUGUGUGGCCUGGUGGCUGUGG Uba5; Ube1dc1 mmu-miR-201 252 275 UCUUGUUACG-GAAUGACUCAU- |:| :||| || |||| ||: UGGAGGAUGGACUGACUGUGUGG Uba5; Ube1dc1 mmu-miR-205 226 260 GUCUGAGGCCACCU------------UACUUCCU- |:|||:|| || |||:|||| -CGGCUCUGGACGAUAAAUAGCACAAAUGGAGGAU Uba5; Ube1dc1 mmu-miR-208 1 25 UGU--UCGAAAAACGA--GCAGAAUA- ||| :||| ||| :||||||| ACAGUGGCUG---GCUUCUGUCUUAUU Uba5; Ube1dc1 mmu-miR-21 378 401 AGUUGUAGU--CAGACUAUUCGAU- ||||||| || ||:||||| -AAACAUCAAUGUAA-AUGAGCUAA Uba5; Ube1dc1 mmu-miR-214 262 283 -GACGGACAGACACGGACGACA ||| |||| || ||||| || ACUGACUGUGUG-GCCUGGUGG Uba5; Ube1dc1 mmu-miR-216b 105 146 -AGUGUA--AACG----GACG--------UCUCUAAAGGG ||||: |||: |||: || |:|||||: UUCACGGAGUUGUUAUGCUGUGUGGAACUAGUGGUUUCCUC Uba5; Ube1dc1 mmu-miR-219 305 331 UCUUAACGCAA----ACCUGUUAGU- |||| || ||||||:|:| UGAAUGGCUUCCUACUGGACAGUUAC Uba5; Ube1dc1 mmu-miR-222 264 292 CUCUGGGUCAUCGGUCU----ACAUCGA- |||: ||:||| |: |||:||| -UGACUGUGUGGCCUGGUGGCUGUGGCUG Uba5; Ube1dc1 mmu-miR-24 266 292 -GACAA---GGACGACUUGAC-UCGGU |||| |||| || :||| :||: ACUGUGUGGCCUGGUG-GCUGUGGCUG Uba5; Ube1dc1 mmu-miR-24* 64 99 -UGACUAU----AGUCG------AGUCAUCCGUG- ||| ||| |:||| |:||| ||||: AACUAAUAAAACUUAGCGCCGCCUUAGUUGGCAUG Uba5; Ube1dc1 mmu-miR-27a 258 290 CGCCU---UGA---AUCGG-----UGACACUU :||| ||| |:||| :|||||: AUGGACUGACUGUGUGGCCUGGUGGCUGUGGC Uba5; Ube1dc1 mmu-miR-296 174 204 -UGUC-CUAA----CUC--CCCC-CCGGGA |||| || ||| |||| || || CACAGCGACAGAAAGAGAAGGGGUGGACCA Uba5; Ube1dc1 mmu-miR-298 109 152 -CCU---------------UCUUG-UCG--GGAGGA-GACGG ||| :|||| ||: ::|||| ||||: CGGAGUUGUUAUGCUGUGUGGAACUAGUGGUUUCCUCCUGCUU Uba5; Ube1dc1 mmu-miR-301b 227 250 ACGAAA-CUGUUAUGGUAACGUGAC ||| |||:||| || |||| GGCUCUGGACGAUAA-AUAGCACA- Uba5; Ube1dc1 mmu-miR-324-3p 266 290 GGUCGUCGUGGACC-CCGUCACC- | |:: :||||| ||| |||| ACUGUGUGGCCUGGUGGCUGUGGC Uba5; Ube1dc1 mmu-miR-325 291 324 -UGUGAAU-GACUCGU--------GGAUGAUCC ||| |: |||||: ||||||:| GACAGGUGUCUGAGUGAAUGGCUUCCUACUGGA Uba5; Ube1dc1 mmu-miR-337 92 118 UUUCCGUAGUAUAU-------CCUCGACUU ||||| :|:|| ||||:|| --UGGCAU-GUGUAUCUUCACGGAGUUGU- Uba5; Ube1dc1 mmu-miR-339 267 298 -ACUCGA-GGACCUCC---------UGUCCCU || |: ||||| || ||||| CUGUGUGGCCUGGUGGCUGUGGCUGACAGGU- Uba5; Ube1dc1 mmu-miR-342 107 132 CUGCC-C-ACGCUAAAGACACACUCU- |||| | ||: ||||||| || CACGGAGUUGUUAUG-CUGUGUG-GAA Uba5; Ube1dc1 mmu-miR-346 270 296 UCUCCGU----CCGUGAGCCCGUCUGU- | ||| ||| | ||| |||| UGUGGCCUGGUGGCUGU--GGCUGACAG Uba5; Ube1dc1 mmu-miR-34b 56 89 -GUUAGUC--GAUUAA-------UGUGACGGAU |||||:| ||||| :|:| |||| ACAAUCGGAACUAAUAAAACUUAGCGCCGCCUU Uba5; Ube1dc1 mmu-miR-377 109 131 UGUUUUCAACGGAA--ACACACUA ::|||||:: ||||||: --CGGAGUUGUUAUGCUGUGUGGA Uba5; Ube1dc1 mmu-miR-411 265 289 -UGACUC-CCA-AUCACCUGGCACAA |||| | || |:|||| |:||| GACUGUGUGGCCUGGUGG-CUGUGG- Uba5; Ube1dc1 mmu-miR-412 279 307 UGCCGAUCACCUG--GUCCAC---UUCA- :|||| |||| |||||| :||| GUGGCU-GUGGCUGACAGGUGUCUGAGUG Uba5; Ube1dc1 mmu-miR-469 179 199 CCUGUGGUUCUAGUUACUUUCUCCGU |||| |||| :|||:||: CGACAGAAAGA------GAAGGGGUG Uba5; Ube1dc1 mmu-miR-484 252 281 UAGCCCUCC--CCUGACU-------CGGACU- ||||| ||||||| |||||: ---UGGAGGAUGGACUGACUGUGUGGCCUGGU Uba5; Ube1dc1 mmu-miR-485-3p 252 277 CUCUCCUCUC-GGC--ACAUACUGA :||||| :| |:| |||:||:| UGGAGGAUGGACUGACUGUGUGGCC Uba5; Ube1dc1 mmu-miR-487b 217 241 UCACCUA---CUGGGACAUGCUAA |||| |:|:||| ||||| UGUGGCCUACGGCUCUGGACGAUA Uba5; Ube1dc1 mmu-miR-500 262 301 -GACU-------UGGGAA--CGG--------GUCCACGUA |||| :||: ||: ||||||: ACUGACUGUGUGGCCUGGUGGCUGUGGCUGACAGGUGUC- Uba5; Ube1dc1 mmu-miR-615 190 237 -UUCUCC---------------CU------CUGGGU-CCGAG CCU |||:|| | |:||:| ||||| ||| GAAGGGGUGGACCAUCCCAUCCGUGUCUGUGGCCUACGGCUCUGGAC Uba5; Ube1dc1 mmu-miR-652 78 97 ACGUGUUGGGAUC-ACCGCGGUAA ||:| :||:||| |||| AGCGCCGCCUUAGUUGGCA----- Uba5; Ube1dc1 mmu-miR-667 278 302 GAAC-CCGAC-CC-ACCGUCCACAGU | ||||| || || |||||||| --GGUGGCUGUGGCUGACAGGUGUCU Uba5; Ube1dc1 mmu-miR-668 277 309 -CCAUC-AC-CCGGCU-----C-GGCUCACUGU |||:| || |||:|| | |:|||||| UGGUGGCUGUGGCUGACAGGUGUCUGAGUGAA- Uba5; Ube1dc1 mmu-miR-671 131 155 GGAGGUCG----GGGAGGUCCCGAAGGA |:||: :||||| |||||| --ACUAGUGGUUUCCUCCU--GCUUCCG Uba5; Ube1dc1 mmu-miR-673 103 130 -GAGGUUCCUGGUCU---CGACACUC- ||:|| ||| : | |||||| | UCUUCACGGAGUUGUUAUGCUGUGUGG Uba5; Ube1dc1 mmu-miR-674* 258 289 AACAAGACU------CU--ACCCUCGACAC- || |||| |: ||| :|||||| AUGGACUGACUGUGUGGCCUGGUGGCUGUGG Uba5; Ube1dc1 mmu-miR-676 226 263 -UCGAG--UUGUUG------------GAGUCCUGCC- :|||| :||:|: : ||||:|| CGGCUCUGGACGAUAAAUAGCACAAAUGGAGGAUGGA Uba5; Ube1dc1 mmu-miR-679 344 369 -UGGUUCUCAGUGGAG--UGUCAGG- ||||:|||| ||:|: |||| || GACCAGGAGUGACUUUAAACAG-CCU Uba5; Ube1dc1 mmu-miR-681 268 293 UCGA--CGGACGGUCG-CUCCGAC- |: ||||| ::|| | ||||| UGUGUGGCCUGGUGGCUGUGGCUGA Uba5; Ube1dc1 mmu-miR-682 259 297 GUCUGA---------------AGUGACACUGAC-GUC- :|||| | :|||||:||| ||| UGGACUGACUGUGUGGCCUGGUGGCUGUGGCUGACAGG Uba5; Ube1dc1 mmu-miR-689 197 239 -CCUGG--GGC--GGCU----CGCC-----------CCUGC ||||| || ||| |:|| ||||| UGGACCAUCCCAUCCGUGUCUGUGGCCUACGGCUCUGGACGA Uba5; Ube1dc1 mmu-miR-693-5p 275 293 CUUUUGAAAGCCUACACCGAC- || :|| |||||||| ----CCUGGUGGCUGUGGCUGA Uba5; Ube1dc1 mmu-miR-700 194 216 -CCACCUGAGCCAAGGGC--GCAC- ||||||| | |||| |||| GGGUGGAC-CA--UCCCAUCCGUGU Uba5; Ube1dc1 mmu-miR-709 140 165 -AGGAGGACGGAGACGGA----GG- |||||||||:|| |: || UUCCUCCUGCUUCCGUAUACAACCU Uba5; Ube1dc1 mmu-miR-714 263 284 CGCUGGCUGGCCGGGAGCAGC- :|||:| :||||: || | CUGACUGUGUGGCCUG-GUGGC Uba5; Ube1dc1 mmu-miR-715 78 115 GUGCGC---------CCCCACACG------UGCCUC- :||| || ||||: |||||| AGCGCCGCCUUAGUUGGCAUGUGUAUCUUCACGGAGU Uba5; Ube1dc1 mmu-miR-717 186 222 -UCUCUUCCA------------UAGAGACAGACUC- |||||||| ||| |||||| | AAGAGAAGGGGUGGACCAUCCCAUCCGUGUCUGUGG Uba5; Ube1dc1 mmu-miR-718 270 294 GCUGUGGG---CCGGC-CCGCCUUC | :||: |||:| ||| || UGUGGCCUGGUGGCUGUGGCUGAC- Uba5; Ube1dc1 mmu-miR-742 265 286 AAAUGGGUCGU---ACCACCGAAAG ||: |:: |||||||| --GACUGUGUGGCCUGGUGGCUG-- Uba5; Ube1dc1 mmu-miR-743 281 303 AGAUGA-GUCGAA---CCACAGAAA :|| ::||| ||||||| --GGCUGUGGCUGACAGGUGUCUG- Uba5; Ube1dc1 mmu-miR-761 122 152 -ACACA--------GUCAAAGUGGGACGACG ||||| ::||||| :|||||| CUGUGUGGAACUAGUGGUUUCCUCCUGCUU- Uba5; Ube1dc1 mmu-miR-764-3p 291 319 -UGUCAACGGUGA----UACCGGAGGA- |||| ||:| |||||:|||| GACAGGUGUCUGAGUGAAUGGCUUCCUA Uba5; Ube1dc1 mmu-miR-770-3p 205 229 -GGUCGAGGUGCAGU--CCGGGUGC- ||| |||::||| ||||:||| CCCA--UCCGUGUCUGUGGCCUACGG Uba5; Ube1dc1 mmu-miR-93 227 250 GAUG-GACGUGCU---UGUCGUGAAAC :| ||| |||| |:||||| -GGCUCUGGACGAUAAAUAGCACA--- Uba5; Ube1dc1 mmu-miR-98 321 340 -UUGUUAUGUUGAAUGAUGGAGU :|||:| ||| |||||: GGACAGUU--ACUCACUACUA-- Uba5; Ube1dc1 mmu-miR-136 250 257 ---------------AGGUA-GUAGUUU----UGUUUACCUCA ||:: |: :||| |||||||||| UCUGUGGCCUACGGCUCUGGACGAUAAAUAGCACAAAUGGAGG Uba5; Ube1dc1 mmu-miR-224 352 359 AUUUGCC--------------------UUGGUGAUCACUGAAU :|||| |||||||| UACUGGACAGUUACUCACUACUACUCUGACCAGGAGUGACUUU Uba5; Ube1dc1 mmu-miR-540 341 348 ---------GGU---CCUAGCUG-----------GAGACUGGA || ||| | |||||||| GAAUGGCUUCCUACUGGACAGUUACUCACUACUACUCUGACCA Uba5; Ube1dc1 mmu-miR-667 294 301 -----------------GAAC-CCGAC-CC-ACCGUCCACAGU || | ||||| || || |||||||| UGGACUGACUGUGUGGCCUGGUGGCUGUGGCUGACAGGUGUCU Uba5; Ube1dc1 mmu-miR-668 350 357 CCAUCACCC------------------GGCUCGG--CUCACUGU |:|| || ||||||| CCUACUGGACAGUUACUCACUACUACUCUGA-CCAGGAGUGACU Uba5; Ube1dc1 mmu-miR-671 310 317 GGAGG-UCGG----GGAGGUC--------------CCGAAGGA ||| :||: |: ||| |||||||| CCUGGUGGCUGUGGCUGACAGGUGUCUGAGUGAAUGGCUUCCUA Uba5; Ube1dc1 mmu-miR-693-5p 284 291 CUUUU----------------------GAAAGCCUACACCGAC || :|| |||||||| AAAUGGAGGAUGGACUGACUGUGUGGCCUGGUGGCUGUGGCUGA Uba5; Ube1dc1 mmu-miR-717 297 304 UCUCUU----------CCAUAGAG-----------ACAGACUC |||: || |||||||| ACUGACUGUGUGGCCUGGUGGCUGUGGCUGACAGGUGUCUGAGU Uba5; Ube1dc1 mmu-let-7e 133 153 ugauauguuGGAGGAUGGAGu ||||||:|:|| tagtggtttCCTCCTGCTTCc Uba5; Ube1dc1 mmu-let-7f 318 343 UGAUAUGUUA--GA-UGAUG--GAGu |||: |||:| || ||||| ||| ACTGGACAGTTACTCACTACTACTCt Uba5; Ube1dc1 mmu-let-7g 318 343 UGACAUGUU--UGA-UGAUG--GAGu |||| |||: ||| ||||| ||| ACTGGACAGTTACTCACTACTACTCt Uba5; Ube1dc1 mmu-let-7i 318 343 UGUCGUGUU--UGA-UGAUG--GAGu || | |||: ||| ||||| ||| ACTGGACAGTTACTCACTACTACTCt Uba5; Ube1dc1 mmu-miR-128a 250 272 UUUUCUCUGGCC-AAGUGACACu || :|||: :|| | |||||| AATGGAGGATGGACTGACTGTGt Uba5; Ube1dc1 mmu-miR-128b 253 272 CUUUCU--CUGGCCAAGUGACACu |:|:|| |||:| |||||| GGAGGATGGACTG----ACTGTGt Uba5; Ube1dc1 mmu-miR-133a 181 204 UGUCGACCAACUU--CC-CCUGGUu |||| | ||| || |||||| ACAGAAAG-AGAAGGGGTGGACCAt Uba5; Ube1dc1 mmu-miR-133b 181 204 aucgaccaaCUU--CC-CCUGGUu ||| || |||||| acagaaagaGAAGGGGTGGACCAt Uba5; Ube1dc1 mmu-miR-136 235 257 aGGUAGUAGUUUUGUUUACCUCa | || | :|: |||||||||| aCGATAAATAGCACAAATGGAGg Uba5; Ube1dc1 mmu-miR-140* 209 223 AGGCACCAAGAUGGGACACCau |||||| :|||||| TCCGTG-------TCTGTGGcc Uba5; Ube1dc1 mmu-miR-144 95 126 gauCAUGUAGUAG----------AUAUGACAu ||::||| || |||:|||| catGTGTATCTTCACGGAGTTGTTATGCTGTg Uba5; Ube1dc1 mmu-miR-146 313 333 uuGGGU-ACCUUAAGUCAA-GAGU ||:| |||| ||||| |||| ttCCTACTGGA---CAGTTACTCA Uba5; Ube1dc1 mmu-miR-146b 313 333 ucGGAU-ACCUUAAGUCAA-GAGU |||| |||| ||||| |||| ttCCTACTGGA---CAGTTACTCA Uba5; Ube1dc1 mmu-miR-181a 284 312 ugAGUGGCUGU-CGCA-----ACUUACaa | :|:|||| |:|| |||||| tgTGGCTGACAGGTGTCTGAGTGAATGgc Uba5; Ube1dc1 mmu-miR-181b 285 312 ggguGGCUGUC----G--UUACUUACaa |:||||| | |:|||||| gtggCTGACAGGTGTCTGAGTGAATGgc Uba5; Ube1dc1 mmu-miR-181c 284 312 ugAGUGGCUGUCCA-------ACUUACaa | :|:||||||| |||||| tgTGGCTGACAGGTGTCTGAGTGAATGgc Uba5; Ube1dc1 mmu-miR-181d 287 312 uuGGGUGGCUGUUG--UUACUUACaa |: || |::: | |:|||||| ggCTGACAGGTGTCTGAGTGAATGgc Uba5; Ube1dc1 mmu-miR-185 12 33 cuuGACGG----AAAGAGAGGu |||:| ||||||| | cttCTGTCTTATTTTCTCTGCt Uba5; Ube1dc1 mmu-miR-188 172 198 UGG----GAGGUGGUAC-GUUCCCUAC ||| | || | | |||||:|| ACCACAGCGACAGAAAGAGAAGGGGTG Uba5; Ube1dc1 mmu-miR-193 258 280 gACC---CUGAAACAUCCGGUCaa ||| |||| ||| |||| | aTGGACTGACTGTGT-GGCCTGgt Uba5; Ube1dc1 mmu-miR-199a* 246 271 uUGGUUA-CACGU--CUGA-UGACAu || ||| | | | |||| ||||| cACAAATGGAGGATGGACTGACTGTg Uba5; Ube1dc1 mmu-miR-205 225 258 guCUGAGGCC--------ACC----UUACUUCCU |:|||:|| | | ||||:|||| acGGCTCTGGACGATAAATAGCACAAATGGAGGA Uba5; Ube1dc1 mmu-miR-21 377 399 agUUGUAGUCAGA-CUAUUCGAU ||||||| | | ||:||||| aaAACATCAATGTAAATGAGCTA Uba5; Ube1dc1 mmu-miR-214 263 282 GACGGACAGACACGGACGACa ||| |||| || ||||| || CTGACTGTGTG-GCCTGGTGg Uba5; Ube1dc1 mmu-miR-216b 106 144 AGUG--UAAACG----GAC--------GUCUCUAAAGGg |||| | |||: ||| :|| |:||||| TCACGGAGTTGTTATGCTGTGTGGAACTAGTGGTTTCCt Uba5; Ube1dc1 mmu-miR-222 271 290 CUCUGGGUCAUCGGUCUACAUCGA | |:||::||:|| |||:||| GTGGCCTGGTGGC----TGTGGCT Uba5; Ube1dc1 mmu-miR-224 338 359 AUUUGCCUUGGUGAUCACUGAAu || | | |||| |||||||| TACTCTG-ACCAGGAGTGACTTt Uba5; Ube1dc1 mmu-miR-24 283 307 GACAAGGAC-GAC--UUGACUCggu |||| ||| | | : ||||| CTGTGGCTGACAGGTGTCTGAGtga Uba5; Ube1dc1 mmu-miR-24* 74 97 UGACUAUAGUC-GAGUCAUCCGUg ||| | | | ||:||| |||| ACTTAGCGCCGCCTTAGTTGGCAt Uba5; Ube1dc1 mmu-miR-27a 251 273 cgCCUUGAAUCGG--UGACACuu |||: |:| | |||||| atGGAGGATGGACTGACTGTGtg Uba5; Ube1dc1 mmu-miR-296 181 203 UGUCCUAACUC--CCCC-CCGGGa ||| || ||| |||| || || ACA-GAAAGAGAAGGGGTGGACCa Uba5; Ube1dc1 mmu-miR-298 128 150 CCUUCUUGUCGGGAGGA-GACGg |||| | | ::|||| |||| GGAACTAGTGGTTTCCTCCTGCt Uba5; Ube1dc1 mmu-miR-301b 227 250 aCGA-AACUGUUAUGGUAACGUGac ||| | |||:||| || |||| gGCTCTGGACGATA-AATAGCACaa Uba5; Ube1dc1 mmu-miR-325 297 323 uguGAAUGACU---CG-UGGAUGAUCc || | ||| || ||||||:| tgtCTGAGTGAATGGCTTCCTACTGGa Uba5; Ube1dc1 mmu-miR-337 96 118 uuucCGUAGUAUAUCCUCGACuu |:||| | ||||:|| atgtGTATCTTCACGGAGTTGtt Uba5; Ube1dc1 mmu-miR-339 280 298 ACUCGAGGACCUCCUGUCCcu || ||| ||| |||||| TG-GCT-GTGGCTGACAGGtg Uba5; Ube1dc1 mmu-miR-34b 57 88 GUUAGUC--GAUU------AAU-GUGACGGAu |||||:| |||| ||| |:| |||| CAATCGGAACTAATAAAACTTAGCGCCGCCTt Uba5; Ube1dc1 mmu-miR-377 106 130 uGU-UUUCAACGGAA--ACACACua || ::|||||:: | |||||| tCACGGAGTTGTTATGCTGTGTGga Uba5; Ube1dc1 mmu-miR-411 250 273 UGACUCCCAAUC-ACCUGGCACAa | ||: || |:| |||:|||| AATGGAGGATGGACTGACTGTGTg Uba5; Ube1dc1 mmu-miR-469 173 198 ccUGUGGUUCUAGUUACUUUCUCCgu ||| |:| | || :|||:|| ccACAGCGACAGAAAGAGAAGGGGtg Uba5; Ube1dc1 mmu-miR-484 251 279 UAGC-CCUCCC---CUG--AC-UCGGACu || | ||| || ||| || :||||| ATGGAGGATGGACTGACTGTGTGGCCTGg Uba5; Ube1dc1 mmu-miR-500 276 301 GAC--UUGGGAACGG--GUCCACgua ||| ::|: | ||: |||||| CTGGTGGCTGTGGCTGACAGGTGtct Uba5; Ube1dc1 mmu-miR-540 327 348 gguccuaGCUG--GAGACUGGa | || |||||||| ttactcaCTACTACTCTGACCa Uba5; Ube1dc1 mmu-miR-615 212 235 uucuccCUCUGGGU-CCGAG-CCU | |:||:| ||||| ||| gtgtctGTGGCCTACGGCTCTGGA Uba5; Ube1dc1 mmu-miR-652 53 86 ACGUGUUGG----GAU-------CACCGCGGuaa || ||||:| ||| | ||||| TGAACAATCGGAACTAATAAAACTTAGCGCCgcc Uba5; Ube1dc1 mmu-miR-667 276 301 GAAC-CCGAC-CC-ACCGUCCACAGu || | ||||| || || |||||||| CTGGTGGCTGTGGCTGACAGGTGTCt Uba5; Ube1dc1 mmu-miR-668 333 357 ccaucacccGGCUCGG--CUCACUGu |:|| || ||||||| actactactCTGA-CCAGGAGTGACt Uba5; Ube1dc1 mmu-miR-668 278 309 CCAUC-AC-CCGGCU-----C-GGCUCACUgu |||:| || |||:|| | |:|||||| GGTGGCTGTGGCTGACAGGTGTCTGAGTGAat Uba5; Ube1dc1 mmu-miR-671 294 317 ggaggucggggaggUCCCGAAGGA | |||||||| aggtgtctgagtgaATGGCTTCCT Uba5; Ube1dc1 mmu-miR-671 120 144 ggaggucggggaGGUC-CCGAAGGA |:|| ||:||||| tgctgtgtggaaCTAGTGGTTTCCT Uba5; Ube1dc1 mmu-miR-673 104 128 GAGGUUCCUGGUC--U-CGACACuc ||:|| ||| : | | |||||| CTTCACGGAGTTGTTATGCTGTGtg Uba5; Ube1dc1 mmu-miR-674* 267 287 aACAAGACUCUACCCUCGACAC || | ||: ||| :|||||| cTG-TGTGGCCTGGTGGCTGTG Uba5; Ube1dc1 mmu-miR-676 220 238 uCGAGUUGUUGGAGUCCUGCc || | ||:: ||| ||||| gGC-CTACGG-CTCTGGACGa Uba5; Ube1dc1 mmu-miR-679 345 368 UGGUUCUCAGUGGA--GUGUCAGg ||||:|||| ||:| |||| | ACCAGGAGTGACTTTAAACAGCCt Uba5; Ube1dc1 mmu-miR-681 270 291 uCGACGGACGGUC-GCUCCGAC |: ||||| ::| :| ||||| tGTGGCCTGGTGGCTGTGGCTG Uba5; Ube1dc1 mmu-miR-682 272 295 guCUGA--AGUGACACUGAC-GUC | || | :|||||:||| ||| tgGCCTGGTGGCTGTGGCTGACAG Uba5; Ube1dc1 mmu-miR-689 198 237 CCUGG-------GGC---GGCUC-----GCC----CCUGC ||||| ||| |:| | ||| ||||| GGACCATCCCATCCGTGTCTGTGGCCTACGGCTCTGGACG Uba5; Ube1dc1 mmu-miR-693-5p 271 291 cuuuuGAAAGCCUACACCGAC || :|| |||||||| gtggcCTGGTGGCTGTGGCTG Uba5; Ube1dc1 mmu-miR-700 195 216 CCACCUG--AGCCAAGGGCGCAc ||||||| || :|||:|| GGTGGACCATC-CCATCCGTGTc Uba5; Ube1dc1 mmu-miR-701 205 225 aGGUAGAUAAAGUCGCCGauu ||||| :| || |:||| cCCATCCGTGTCTGTGGCcta Uba5; Ube1dc1 mmu-miR-702 176 202 cUCGC---C---CCAUUUCCCACCCGu |||| | | ||:|||||| | cAGCGACAGAAAGAGAAGGGGTGGACc Uba5; Ube1dc1 mmu-miR-709 134 153 aggaggACGGA-GACGGAGG | ||| ||||:||| agtggtTTCCTCCTGCTTCC Uba5; Ube1dc1 mmu-miR-714 259 282 cgCUGGCUGGC---CGGGAGCAgc |||:|||:| | ||| || tgGACTGACTGTGTGGCCTGGTgg Uba5; Ube1dc1 mmu-miR-715 93 113 gugcgcccccacacGUGCCUC ||||||| ggcatgtgtatcttCACGGAG Uba5; Ube1dc1 mmu-miR-717 278 304 uCUCUUCCAUAGA--G---ACAGACUC | |: ||: || | |||||||| gGTGGCTGTGGCTGACAGGTGTCTGAG Uba5; Ube1dc1 mmu-miR-717 187 220 UCUCUU--CCA-----UAG---AG--ACAGACuc |||||| ||| ||| || |||||| AGAGAAGGGGTGGACCATCCCATCCGTGTCTGtg Uba5; Ube1dc1 mmu-miR-718 264 285 gCUG-UGGGCCGGCCCGCCuuc ||| :: :|||| ||:|| tGACTGTGTGGCCTGGTGGctg Uba5; Ube1dc1 mmu-miR-742 266 287 aaAUGGGUCGUACCACCGAAAg |:: ::|| |||||||| | acTGTGTGGCCTGGTGGCTGTg Uba5; Ube1dc1 mmu-miR-743 279 303 agauGA-GUCGA---ACCACAGAaa || ::||| ||||||| gtggCTGTGGCTGACAGGTGTCTga Uba5; Ube1dc1 mmu-miR-761 134 152 aCACAGUCAAAGUGGGACGAcg ||| ||||| :|||||| aGTG---GTTTCCTCCTGCTtc Uba5; Ube1dc1 mmu-miR-764-3p 292 317 UGUCAACGG--UGA--UACCGGAGGA |||| ||:| | | |||||:|||| ACAGGTGTCTGAGTGAATGGCTTCCT Uba5; Ube1dc1 mmu-miR-770-3p 201 227 GGUCG---AGGUGCAG--UCCGGGUGC ||| | |||::||| ||||:||| CCATCCCATCCGTGTCTGTGGCCTACG Uba5; Ube1dc1 mmu-miR-93 223 252 GAUG----GACGUGC---UUGUCGUGaaac |||| ||| ||| ||:||||| CTACGGCTCTGGACGATAAATAGCACaaat Uba5; Ube1dc1 mmu-miR-98 317 343 uUGUUAUGU---UGAAUGAUG--GAGu || : ||| ||| ||||| ||| tACTGGACAGTTACTCACTACTACTCt

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Uba5 RAID00249359 mmu-miR-5710 miRNA MIMAT0022505 Uba5 mRNA 66663 Prediction 0.1828 Uba5 RAID00318516 mmu-miR-92b-3p miRNA MIMAT0004899 Uba5 mRNA 66663 Prediction 0.1828 Uba5 RAID01298407 mmu-miR-6919-5p miRNA MIMAT0027738 Uba5 mRNA 66663 Prediction 0.1828 Uba5 RAID01714495 mmu-miR-7b-5p miRNA MIMAT0000678 Uba5 mRNA 66663 Prediction 0.1828 Uba5 RAID02386499 mmu-miR-21a-5p miRNA MIMAT0000530 Uba5 mRNA 66663 CLIP-seq 0.5483 Uba5 RAID02409371 mmu-miR-6915-5p miRNA MIMAT0027730 Uba5 mRNA 66663 Prediction 0.1828 Uba5 RAID02529203 mmu-miR-540-3p miRNA MIMAT0003167 Uba5 mRNA 66663 Prediction 0.1828 Uba5 RAID02688285 mmu-miR-691 miRNA MIMAT0003470 Uba5 mRNA 66663 Prediction 0.1828 Uba5 RAID02748264 mmu-miR-6969-5p miRNA MIMAT0027840 Uba5 mRNA 66663 Prediction 0.1828 Uba5 RAID02834072 mmu-miR-376c-3p miRNA MIMAT0003183 Uba5 mRNA 66663 Prediction 0.1828 Uba5 RAID02918523 mmu-miR-3970 miRNA MIMAT0019355 Uba5 mRNA 66663 Prediction 0.1828 Uba5 RAID03454409 mmu-miR-802-5p miRNA MIMAT0004188 Uba5 mRNA 66663 Prediction 0.1828 Uba5 RAID03521730 mmu-miR-298-5p miRNA MIMAT0000376 Uba5 mRNA 66663 Prediction 0.1828 Uba5 RAID03839414 mmu-miR-497a-3p miRNA MIMAT0017247 Uba5 mRNA 66663 Prediction 0.1828