DNA & RNA Element - RepTar |
Gene Name | miRNA | Begin | End | Profile |
Kctd17 | mmu-miR-129-3p | beg:339 | end:353 | pic:3' TACGAAAAACCCCATTCCCGAA 5'& |||| ||||||| &5' ---------GGGG-AAGGGCT- 3' |
Kctd17 | mmu-miR-23a | beg:397 | end:411 | pic:3' CCTTTAGGGACC-GTTACACTA 5'& || |||||||| &5' ----------GGACAATGTGA- 3' |
Kctd17 | mmu-miR-704 | beg:573 | end:593 | pic:3' GATCCTCGTCTCGTGTACAGA 5'& .||| |.|||||||||| &5' --GGGAT--GGGCACATGTCT 3' |
Kctd17 | mmu-miR-15astar | beg:368 | end:386 | pic:3' ACTCCGTCGTGTCATACCGGAC 5'& .| ||| |||||||| &5' ------GGGACACTATGGCCT- 3' |
Kctd17 | mmu-miR-2132 | beg:594 | end:614 | pic:3' GTAGCGCAGTTGTGGGCGG 5'& .|.|.||| |||||||| &5' -GTTGTGTCC-CACCCGCC 3' |
Kctd17 | mmu-miR-1937a | beg:571 | end:581 | pic:3' ACCCCCGAGCAGGCCCTAA 5'& ||||||| &5' -----------CCGGGAT- 3' |
Kctd17 | mmu-miR-1961 | beg:242 | end:260 | pic:3' AAGATTGATGATGGAGT 5'& || | |||||||| &5' --CTCCCACCTACCTCA 3' |
Kctd17 | mghv-miR-M1-3 | beg:135 | end:149 | pic:3' TTCGCGTTGAGGACGAGTGGAG 5'& ||| ||||||| &5' ---------TCCC-CTCACCT- 3' |
Kctd17 | mmu-miR-1955 | beg:28 | end:45 | pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& .| || .||||||| &5' ---------GG-GCCCTCTGGGAC- 3' |
Kctd17 | mmu-miR-1898 | beg:554 | end:571 | pic:3' CTAGGGGACACTTGGAACTGGA 5'& ||| ||| .||||||| &5' ----CCC-GTG--TCTTGACC- 3' |
Kctd17 | mmu-miR-674star | beg:538 | end:553 | pic:3' AACAAGACTCTACCCTCGACAC 5'& |.| ||||||| &5' -------GGGTT--GAGCTGT- 3' |
Kctd17 | mmu-miR-744 | beg:346 | end:363 | pic:3' ACGACAATCGGGATCGGGGCGT 5'& .||.|||||||||| &5' -------GGCTCTAGCCCCGC- 3' |
Kctd17 | mcmv-miR-M87-1 | beg:634 | end:652 | pic:3' CGACGGCGACGGCTGCCGACGGA 5'& ||. ||| .||||||| &5' ---GCTTG-GCC--TGGCTGCC- 3' |
Kctd17 | mmu-miR-296-5p | beg:14 | end:24 | pic:3' TGTCCTAACTCCCCCCCGGGA 5'& ||||||| &5' -------------GGGGCCC- 3' |
Kctd17 | mmu-miR-296-5p | beg:20 | end:38 | pic:3' TGTCCTAACTCCCCCCCGGGA 5'& |||| |||||||| &5' -CAGGCCT-----GGGGCCCT 3' |
Kctd17 | mghv-miR-M1-2 | beg:59 | end:76 | pic:3' TTTCTCCCCCTCTCCCCCAGAC 5'& ||| ||||||| &5' -------GGGTCCTGGGGTCT- 3' |
Kctd17 | mcmv-miR-m22-1 | beg:385 | end:403 | pic:3' ACCGGAGCCATG-CCTGCCCCTT 5'& | ||| || .||||.| &5' -------GATACTGG-TGGGGGA 3' |
Kctd17 | mcmv-miR-m22-1 | beg:506 | end:526 | pic:3' ACCGGAGCCATGCCTGCCCCTT 5'& || ||.| |||.|||||| &5' -GGACTTG----GGATGGGGAA 3' |
Kctd17 | mcmv-miR-M23-1-3p | beg:408 | end:429 | pic:3' CC-GGAGCCCGGCTGCGTCCTC 5'& || |.|. ||| | |||||| &5' GGACTTT--GCC-AGGCAGGA- 3' |
Kctd17 | mmu-let-7a | beg:245 | end:260 | pic:3' TTGATATGTTGGATGATGGAGT 5'& || |||||||| &5' ----------CCACCTACCTCA 3' |
Kctd17 | mmu-let-7b | beg:236 | end:260 | pic:3' TTGGTGTGTTGGAT-GATGGAGT 5'& || | | || |||||||| &5' --CCTCTCCTCCCACCTACCTCA 3' |
Kctd17 | mmu-let-7c-1star | beg:518 | end:543 | pic:3' CCTTTCGATCT-TCCAACA-TGTC 5'& ||.||| .|| ||| ||| ||.| &5' GGGAAGG-GGACAGG-TGTAACGG 3' |
Kctd17 | mmu-let-7e | beg:0 | end:17 | pic:3' TTGATATGTTGGAGGATGGAGT 5'& || |||||.|||. &5' ------ACTCACTCCTGCCTT- 3' |
Kctd17 | mmu-miR-1186b | beg:176 | end:192 | pic:3' CACCACGTACGGAAA-TTAGGGT 5'& ||| |.||||| &5' ----------CCTCCCAGTCCCA 3' |
Kctd17 | mmu-miR-125a-3p | beg:128 | end:150 | pic:3' CCGAGGGTT-CTT-GGAGTGGACA 5'& || ||. | ||||||||| &5' -GC-CCTTTTGTCCCCTCACCTG- 3' |
Kctd17 | mmu-miR-1274a | beg:498 | end:517 | pic:3' ACCGCGGACTTGTCCCTGGACT 5'& |.|.| |||||||.||. &5' --GTGTC----CAGGGACTTGG 3' |
Kctd17 | mmu-miR-139-3p | beg:59 | end:79 | pic:3' GAGGTTGTCCCGG---CGCAGAGGT 5'& |||.| | ||||||| &5' --------GGGTCCTGGGGTCTCCA 3' |
Kctd17 | mmu-miR-140 | beg:314 | end:333 | pic:3' GATGGTATCCC-ATTTTGGTGAC 5'& |.||| || ||.||.| &5' ------TGGGGCTACAATCATT- 3' |
Kctd17 | mmu-miR-142-3p | beg:361 | end:381 | pic:3' AGGTATTTCATCCTTTGTGATGT 5'& || ||| | ||||||. &5' -CCT----GTATGGGACACTAT- 3' |
Kctd17 | mmu-miR-145star | beg:491 | end:512 | pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& .|| |||||. ||||||.| &5' -GAGTACAGTG--TCCAGGGA- 3' |
Kctd17 | mmu-miR-146bstar | beg:324 | end:345 | pic:3' TGGTCTTGACTCAGGGATCCCG 5'& |.|| || |.|.||||| &5' ATCATTACC---TTCTTAGGG- 3' |
Kctd17 | mmu-miR-150star | beg:455 | end:477 | pic:3' GATAGGG-GGTCC--GGACATGGTC 5'& || ||| .||||.||| &5' -----CCACCACTTCTCTGTGCCA- 3' |
Kctd17 | mmu-miR-151-3p | beg:197 | end:219 | pic:3' GGAGTTCCTCGGAGTCAGATC 5'& |||| |||||||||||| &5' CCTCTTAGAGCCTCAGTCT-- 3' |
Kctd17 | mmu-miR-182 | beg:404 | end:423 | pic:3' GCCACACTCAAGATGGTAACGGTTT 5'& |||||| ||. ||||||. &5' ---TGTGAGG---ACT-TTGCCAG- 3' |
Kctd17 | mmu-miR-186star | beg:9 | end:22 | pic:3' GGGTTTTTTAAGTGGAATCCCG 5'& .||||.|||| &5' ------------GCCTTGGGGC 3' |
Kctd17 | mmu-miR-1892 | beg:234 | end:255 | pic:3' TAGGAG-GGAGGGCAGGGGTTTA 5'& |||||| |||||| ||.| &5' ATCCTCTCCTCCCA--CCTA--- 3' |
Kctd17 | mmu-miR-1896 | beg:68 | end:87 | pic:3' GAGGAGTGGGTGGTA-GTCTCTC 5'& . .| ||| |||||| &5' ------GGTCTCCAGGCAGAGA- 3' |
Kctd17 | mmu-miR-1898 | beg:635 | end:646 | pic:3' CTAGGGGACACTTGGAACTGGA 5'& ||||.||| &5' --------------CTTGGCCT 3' |
Kctd17 | mmu-miR-1902 | beg:183 | end:205 | pic:3' TTCAGTACGGATGACGTGGAGA 5'& |||| .| |. |||||||| &5' -AGTCCCATC-ATAGCACCTCT 3' |
Kctd17 | mmu-miR-1902 | beg:435 | end:456 | pic:3' TTCAGTACGGATGA-CGTGGAGA 5'& || ||.|| ||||||. &5' ----CAGGCTTAACAGCACCTT- 3' |
Kctd17 | mmu-miR-1927 | beg:209 | end:237 | pic:3' AGTCAGGGAT--TGTAGGTC-TCCAG 5'& ||||||.||| .|| ||| .|||| &5' TCAGTCTCTATGGCA-CCATAGGGTC 3' |
Kctd17 | mmu-miR-1933-3p | beg:50 | end:71 | pic:3' TATCAGTGTGACTA---CCAGGACC 5'& .| |||| |||||||| &5' ------GC-CTGACATGGGTCCTGG 3' |
Kctd17 | mmu-miR-1936 | beg:578 | end:601 | pic:3' CGGTCAAGTGT-CGTCCAGTCAAT 5'& | |||| |. |||||||. &5' ----GGGCACATGTCTGTCAGTTG 3' |
Kctd17 | mmu-miR-1937b | beg:27 | end:44 | pic:3' ACCCCCGAGCAGGCCCTA 5'& ||||| | ||.|||| &5' --GGGGC-CCTCTGGGA- 3' |
Kctd17 | mmu-miR-1937c | beg:27 | end:44 | pic:3' ACCCCCGAGAAGGCCCTA 5'& ||||| | ||.|||| &5' --GGGGC-CCTCTGGGA- 3' |
Kctd17 | mmu-miR-1938 | beg:243 | end:253 | pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& ||||||| &5' --------------TCCCACC- 3' |
Kctd17 | mmu-miR-1938 | beg:599 | end:610 | pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& |||||||| &5' -------------GTCCCACC- 3' |
Kctd17 | mmu-miR-196a | beg:93 | end:115 | pic:3' GGGTTGTTGTACTTTGATGGAT 5'& |||| ..||. |||||||| &5' -CCAAAC-TGTGGCACTACCTA 3' |
Kctd17 | mmu-miR-196b | beg:93 | end:115 | pic:3' GGGTTGTTGTCCTTTGATGGAT 5'& |||| || |||||||| &5' -CCAAACTGTGGC-ACTACCTA 3' |
Kctd17 | mmu-miR-1971 | beg:11 | end:28 | pic:3' AGAG--TCGGGT-CGGAAATG 5'& ||. .||||| |||| &5' -CTTGGGGCCCAGGCCT---- 3' |
Kctd17 | mmu-miR-199bstar | beg:377 | end:396 | pic:3' CTTGTCCATCAGA-TTTGTGACCC 5'& |.| || |.|.||||| &5' -------TGGCCTCAGATACTGG- 3' |
Kctd17 | mmu-miR-200cstar | beg:383 | end:404 | pic:3' GGTTTGTGACGACCCATTCTGC 5'& ||.|.|||| |||| .||| &5' -CAGATACTGGTGGG--GGAC- 3' |
Kctd17 | mmu-miR-211 | beg:509 | end:531 | pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& | .|||||. .|||||.| &5' ---CTTGGGATGGGGAAGGGGA 3' |
Kctd17 | mmu-miR-2137 | beg:62 | end:82 | pic:3' GAGGGACCCC-GAGGGCGGCCG 5'& .||||||| |||| ||| &5' --TCCTGGGGTCTCCA---GGC 3' |
Kctd17 | mmu-miR-219 | beg:309 | end:331 | pic:3' TCTTAACGCAAA-CC--TGTTAGT 5'& ||.||| || ||||||| &5' -----TGTGTTGGGGCTACAATCA 3' |
Kctd17 | mmu-miR-23b | beg:391 | end:411 | pic:3' CCATTAGGGACC-GTTACACTA 5'& |||.. || |||||||| &5' GGTGGG----GGACAATGTGA- 3' |
Kctd17 | mmu-miR-27a | beg:90 | end:106 | pic:3' CGCCTTGAATCGG--TGACACTT 5'& .||| ||||||. &5' ---------GGCCAAACTGTGG- 3' |
Kctd17 | mmu-miR-27b | beg:90 | end:106 | pic:3' CGTCTTGAATCGG--TGACACTT 5'& .||| ||||||. &5' ---------GGCCAAACTGTGG- 3' |
Kctd17 | mmu-miR-2861 | beg:9 | end:30 | pic:3' GGCGGG---CGGCGGTCCGGGG 5'& |.|||. | | |||||||. &5' CTGCCTTGGGGC-CCAGGCCT- 3' |
Kctd17 | mmu-miR-2861 | beg:109 | end:134 | pic:3' GGCGGGC---GGCGGTCCGGGG 5'& | ||| |. ||||||||. &5' CTACCCATATCTTCCAGGCCCT 3' |
Kctd17 | mmu-miR-293 | beg:97 | end:110 | pic:3' TGTGATGTTTGAGACGCCGTGA 5'& |||.|||||| &5' ------------CTGTGGCACT 3' |
Kctd17 | mmu-miR-30c-2star | beg:228 | end:251 | pic:3' TCTCATTTGTCGGAA--GAGGGTC 5'& ||.|| || ||| |||||| &5' AGGGT---CATCCTCTCCTCCCA- 3' |
Kctd17 | mmu-miR-323-5p | beg:552 | end:574 | pic:3' CGCTTGCGCGGTGCCTGGTGGA 5'& || ||.|.| ||||||| &5' -CGCCCGTGTCTT-GACCACC- 3' |
Kctd17 | mmu-miR-330 | beg:488 | end:512 | pic:3' CGGATTCTGTGTC-CGGGTCTCT 5'& || .|| .|||| |.||||.|| &5' GCA-GAG-TACAGTGTCCAGGGA 3' |
Kctd17 | mmu-miR-331-5p | beg:289 | end:310 | pic:3' CCTAGGGACCCTGGTATGGATC 5'& ||.|.||||||| | |||. &5' GGGTTCCTGGGAGC---CCTG- 3' |
Kctd17 | mmu-miR-331-5p | beg:97 | end:115 | pic:3' CCTAGGGACCCTGGTATGGATC 5'& ||| |.| |||||| &5' ------CTGTGGCACTACCTA- 3' |
Kctd17 | mmu-miR-337-3p | beg:610 | end:630 | pic:3' TCCGTAGTATATCCTCGACTT 5'& | ||| | ||| ||||||| &5' -GCCATGAAATAA-AGCTGAA 3' |
Kctd17 | mmu-miR-342-3p | beg:259 | end:276 | pic:3' TGCCC-ACGCTAAAGACACACTCT 5'& ||| ||. ||||||| &5' --GGGTTGT--------TGTGAGA 3' |
Kctd17 | mmu-miR-3475 | beg:113 | end:130 | pic:3' AAGTTTGGTACACGGAGGTCT 5'& |||| |.|||||. &5' ------CCATAT-CTTCCAGG 3' |
Kctd17 | mmu-miR-463 | beg:576 | end:597 | pic:3' GATGGAATATACC-----ACAGATAGT 5'& |||| |||||.||| &5' ---------ATGGGCACATGTCTGTCA 3' |
Kctd17 | mmu-miR-470 | beg:486 | end:512 | pic:3' TGAGTGGTCACGGT---CAGGTTCTT 5'& || ||| |. |||||.|.| &5' ---CAGCAGAGTACAGTGTCCAGGGA 3' |
Kctd17 | mmu-miR-470star | beg:381 | end:397 | pic:3' AGAAGAGTCTTTCCATGACCAA 5'& |||||| ||||||| &5' ----CTCAGA----TACTGGT- 3' |
Kctd17 | mmu-miR-483star | beg:512 | end:537 | pic:3' TTCTGCCC--TCCCCTCCTCACT 5'& ..||.||| |||||| .||| &5' GGGATGGGGAAGGGGACAGGTG- 3' |
Kctd17 | mmu-miR-532-3p | beg:392 | end:402 | pic:3' ACGTTCGGAACCCACACCCTCC 5'& |||||.| &5' --------------GTGGGGG- 3' |
Kctd17 | mmu-miR-546 | beg:464 | end:481 | pic:3' CTGAGGCACGGTGGTA 5'& |||.||||||||.| &5' --CTCTGTGCCACCGT 3' |
Kctd17 | mmu-miR-665 | beg:281 | end:302 | pic:3' TCCCTGG-AGTCGGAGGACCA 5'& |||.| | .| .|||||| &5' --GGATCATGGGGTTCCTGG- 3' |
Kctd17 | mmu-miR-669g | beg:483 | end:505 | pic:3' TAGTACAGTTGTG-TATGTTACGT 5'& || ||.|| .||||.||. &5' ----TGGCAGCAGAGTACAGTGT- 3' |
Kctd17 | mmu-miR-670 | beg:262 | end:284 | pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& | . . ||||||| &5' -TTGTTGTGAGAA-TCAGGGA- 3' |
Kctd17 | mmu-miR-673-3p | beg:0 | end:18 | pic:3' CCACGTGTCTTGAGT-CGGGGCCT 5'& || |||| |||..|| &5' -----ACTC-ACTCCTGCCTTGG- 3' |
Kctd17 | mmu-miR-691 | beg:412 | end:430 | pic:3' AAAAGACGGAGAGAAGTCCTTA 5'& |.|||| |||||| &5' ---TTTGCCAGG---CAGGAA- 3' |
Kctd17 | mmu-miR-693-3p | beg:608 | end:628 | pic:3' AATGTCGGTGTAGACTTTCGACG 5'& ||||. ||||||| &5' -----GCCATGAAATAAAGCTG- 3' |
Kctd17 | mmu-miR-705 | beg:230 | end:253 | pic:3' ACGGGTGGGGT-GGAGGGTGG 5'& | .||.||. ||||||||| &5' -GGTCATCCTCTCCTCCCACC 3' |
Kctd17 | mmu-miR-709 | beg:240 | end:259 | pic:3' AGGAGGACGGAGACGGAGG 5'& |||||| ||| |||| &5' TCCTCCCACCTA--CCTC- 3' |
Kctd17 | mmu-miR-710 | beg:496 | end:517 | pic:3' GAGTTGAGAGGGGTTCTGAACC 5'& ||. | ||| ..||||||| &5' --CAG-TGTCCA-GGGACTTGG 3' |
Kctd17 | mmu-miR-712 | beg:413 | end:433 | pic:3' CCATGGCGGGCCCA-CTTCCTC 5'& ..||| || |||||| &5' ----TTGCCAGGCAGGAAGGA- 3' |
Kctd17 | mmu-miR-743b-5p | beg:613 | end:632 | pic:3' ACTACCTGTGG-TCAGACTTGT 5'& || || ||||||| &5' -----GAAATAAAG-CTGAACA 3' |
Kctd17 | mmu-miR-744star | beg:476 | end:495 | pic:3' TCCAACTC-CAATCACCGTTGTC 5'& | | ||| |||||.||| &5' -----GTGTGTT--TGGCAGCAG 3' |
Kctd17 | mmu-miR-758 | beg:423 | end:440 | pic:3' ATCACCTGGTC-CAGTGTTT 5'& ||| ||.|||. &5' ----GGAAGGAAGTTACAG- 3' |
Kctd17 | mmu-miR-764-5p | beg:394 | end:416 | pic:3' TCCTCCTG-TACACTCGTGG 5'& ||.|||| ||||||| ||. &5' -GGGGGACAATGTGAGGACT 3' |
Kctd17 | mmu-miR-7b | beg:114 | end:128 | pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& ||.| ||||||| &5' ----------CATA--TCTTCCA 3' |
Kctd17 | mmu-miR-873 | beg:280 | end:301 | pic:3' TCCTCTGAGTGTT-CAAGGACG 5'& |||| ||| . ||||||| &5' -GGAGGATCATGGGGTTCCTG- 3' |
Kctd17 | mmu-miR-92astar | beg:236 | end:254 | pic:3' CATTACGGTGGTTAGGGGTGGA 5'& || |. .||||||| &5' ------CCTCTCC-TCCCACCT 3' |