DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Trim36 ATTTA 162-2351 2429-2433;2821-2825;2970-2974;3014-3018;3290-3294;3780-3784 Trim36 TTATTTATT 162-2351 3778-3786 Trim36 WTATTTATW 162-2351 3288-3296;3778-3786 Trim36 WWATTTAWW 162-2351 2968-2976;3288-3296;3778-3786 Trim36 WWTATTTATWW 162-2351 3777-3787 Trim36 WWWATTTAWWW 162-2351 3777-3787 Trim36 WWWTATTTATWWW 162-2351 3776-3788 Trim36 WWWWATTTAWWWW 162-2351 3776-3788

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT013606 mmu-miR-190a-5p Mus musculus Trim36 28105 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT601445 mmu-miR-298-5p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600238 mmu-miR-34c-5p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600237 mmu-miR-34b-5p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600236 mmu-miR-34a-5p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600241 mmu-miR-329-3p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600245 mmu-miR-139-5p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600235 mmu-miR-449a-5p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600240 mmu-miR-546 Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600239 mmu-miR-449c-5p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600252 mmu-miR-706 Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT601446 mmu-miR-709 Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600251 mmu-miR-665-3p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600247 mmu-miR-759 Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600248 mmu-miR-804 Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600242 mmu-miR-362-3p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600234 mmu-miR-449b Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600250 mmu-miR-1195 Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600243 mmu-miR-1199-5p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT601444 mmu-miR-1935 Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600232 mmu-miR-1946a Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600231 mmu-miR-1965 Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600233 mmu-miR-1946b Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600246 mmu-miR-3082-5p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600249 mmu-miR-3089-5p Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT600244 mmu-miR-5135 Mus musculus Trim36 28105 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004525 mmu-miR-99b* 28105 Trim36 gccugggugucuguGCUCGAAc :|||||| uuauugugguucuuUGAGCUUg 2 9 472 493 [mm9:18:46326574-46326595:-] 0.5553 124 6 -16.77 -0.1082 MIMAT0004527 mmu-miR-124* 28105 Trim36 uagUUCCAGGCGA-CACUUGUGc | || |:| | |||||||| aagAUGGACUGAUAGUGAACACg 2 20 976 998 [mm9:18:46326069-46326091:-] 0.5153 158 7 -21.37 -0.2084 MIMAT0004533 mmu-miR-141* 28105 Trim36 agGUUGUGACGUGACCUUCUAc ||: |:| | ||||||| uuCAGAAUUACUAGGGAAGAUg 2 21 960 981 [mm9:18:46326086-46326107:-] 0.5100 152 7 -18.04 -0.2022 MIMAT0004533 mmu-miR-141* 28105 Trim36 agguugugacgugacCUUCUAc |||||| guucauguccaaagaGAAGAUa 2 8 526 547 [mm9:18:46326520-46326541:-] 0.5872 120 6 -8.15 -0.1323 MIMAT0000154 mmu-miR-142-5p 28105 Trim36 ucaucacGAAAG-AUGAAAUac :|||| ||||||| cuucaaaUUUUCUUACUUUAga 3 15 907 928 [mm9:18:46326139-46326160:-] 0.5485 137 0 -10.71 -0.1611 MIMAT0004534 mmu-miR-145* 28105 Trim36 guUCUUGUCAUAAAGGUCCUUa | | | |||||||||||| caAUAUAAUUAUUUCCAGGAAa 2 21 879 900 [mm9:18:46326167-46326188:-] 0.4930 168 7 -16.63 -1.1873 MIMAT0000230 mmu-miR-199a-3p 28105 Trim36 auuggUUACACGUCUGAUGACa |:||||:| ||||||| uuuaaAGUGUGUA-ACUACUGa 2 18 685 705 [mm9:18:46326362-46326382:-] 0.6191 163 7 -19.64 -0.9770 MIMAT0000230 mmu-miR-199a-3p 28105 Trim36 auUGGU---UAC-ACGU-C--UGAUGACa |||| ||| | || | ||||||| auACCAGACAUGUUACAUGUUACUACUGu 2 21 1114 1142 [mm9:18:46325925-46325953:-] 0.5466 144 7 -18.95 -0.2887 MIMAT0000240 mmu-miR-207 28105 Trim36 cucccuccucucggucCUCUUCg |||||| cauguucauguccaaaGAGAAGa 2 8 523 545 [mm9:18:46326522-46326544:-] 0.5872 120 6 -11.74 -0.1218 MIMAT0004578 mmu-miR-300* 28105 Trim36 uguuUCCUAUUGGAGAGAAGUu |||| | :| |||||| uuccAGGAAAUGUUAUCUUCAa 2 19 891 912 [mm9:18:46326155-46326176:-] 0.4986 130 6 -13.74 -0.1390 MIMAT0000378 mmu-miR-300 28105 Trim36 cuucucUC-GAACG-GGAACGUAu || | ||: :||||||| guacuaAGCCAUGUGUCUUGCAUu 2 17 575 598 [mm9:18:46326469-46326492:-] 0.6191 146 7 -13.60 -0.8849 MIMAT0004622 mmu-let-7c-1* 28105 Trim36 ccuuucgaucuUCCAACAUGUc | |||||||| guuugguacuuAUGUUGUACAu 2 12 1028 1049 [mm9:18:46326018-46326039:-] 0.5716 147 7 -9.69 -0.2940 MIMAT0004625 mmu-miR-16* 28105 Trim36 agucGUCGUGUCAGUUAUGACc ::||| | | ||||||| cgccUGGCA-AAUGAAUACUGc 2 19 716 736 [mm9:18:46326331-46326351:-] 0.5828 152 7 -11.39 -0.2296 MIMAT0004636 mmu-miR-93* 28105 Trim36 gcccuucacgaucGAGUCGUCa :||||||| uucacugcccauuUUCAGCAGc 2 10 1086 1107 [mm9:18:46325960-46325981:-] 0.5466 141 7 -13.12 -0.6103 MIMAT0000549 mmu-miR-322* 28105 Trim36 cacAACGU--CGCGAAGUACAAa || || :|: ||||||| ccuUUUCAUUUUGUAUCAUGUUc 2 19 507 529 [mm9:18:46326538-46326560:-] 0.5553 145 7 -8.92 -0.8780 MIMAT0004667 mmu-miR-199b 28105 Trim36 auuggUUACACGUCUGAUGACa |:||||:| ||||||| uuuaaAGUGUGUA-ACUACUGa 2 18 685 705 [mm9:18:46326362-46326382:-] 0.6191 163 7 -19.64 -0.9770 MIMAT0004667 mmu-miR-199b 28105 Trim36 auUGGU---UAC-ACGU-C--UGAUGACa |||| ||| | || | ||||||| auACCAGACAUGUUACAUGUUACUACUGu 2 21 1114 1142 [mm9:18:46325925-46325953:-] 0.5466 144 7 -18.95 -0.2887 MIMAT0000706 mmu-miR-362-5p 28105 Trim36 uaAGUGUGGAUCCAAG-GUUCCUAa | |:|: | || ||||||| aaUAAUAUGGAAAAUCACAAGGAUg 2 23 1227 1251 [mm9:18:46325816-46325840:-] 0.4885 145 7 -11.84 -0.4537 MIMAT0001093 mmu-miR-411* 28105 Trim36 ccaAUCACCUGGCACAAUGUAu || || | |||||||| aaaUACCAGA-CAUGUUACAUg 2 20 1112 1132 [mm9:18:46325935-46325955:-] 0.5466 149 7 -14.36 -0.6030 MIMAT0002111 mmu-miR-470 28105 Trim36 ugaGUGGU-CACGGUCAGG-UUCUu :|:|| || | |||| |||| uugUAUCAUGUUCAUGUCCAAAGAg 2 21 517 541 [mm9:18:46326526-46326550:-] 0.5872 123 0 -18.75 -0.9022 MIMAT0004781 mmu-miR-532-3p 28105 Trim36 acguucggaacccaCACCCUCc ||||||| accuauuacaaaugGUGGGAGu 2 9 307 328 [mm9:18:46326739-46326760:-] 0.5534 140 7 -14.95 -0.1354 MIMAT0003166 mmu-miR-546 28105 Trim36 cugAGGCACGGUGGUa | :||||||||| aggUGUGUGCCACCAc 2 14 1552 1567 [mm9:18:46325500-46325515:-] 0.4827 153 7 -19.86 -0.2356 MIMAT0003373 mmu-miR-302b* 28105 Trim36 ucuuuCGUAAGGGUACAAUU-UCa ||||| : ||||||| || gucuuGCAUU-UGAUGUUAAUAGa 2 19 589 611 [mm9:18:46326456-46326478:-] 0.6191 128 0 -10.42 -1.1624 MIMAT0003376 mmu-miR-302c 28105 Trim36 ggugacuuuGUACCUUCGUGAa ||| ||||||| uugugugguCAU--AAGCACUu 2 14 1172 1191 [mm9:18:46325876-46325895:-] 0.5466 142 7 -12.99 -0.3481 MIMAT0004188 mmu-miR-802 28105 Trim36 uuccuacuuagaaacAAUGACu |||||| gauauuuuugaaugcUUACUGa 2 8 544 565 [mm9:18:46326502-46326523:-] 0.6191 120 6 -11.04 -0.1032 MIMAT0003897 mmu-miR-759 28105 Trim36 caguuuuaacaaacGUGAGACg ||||||| gcuguccuggaacuCACUCUGu 2 9 1468 1489 [mm9:18:46325578-46325599:-] 0.4827 140 7 -12.82 -0.2510 MIMAT0003739 mmu-miR-673-5p 28105 Trim36 gagguuccuggucuCGACACUc ||||||| uuuugucuuguccuGCUGUGAc 2 9 124 145 [mm9:18:46326922-46326943:-] 0.4818 140 7 -13.77 -0.1475 MIMAT0003470 mmu-miR-691 28105 Trim36 aaaAGACGGAGAGAAGUCCUUa | | :| |:| |||||| caaUAUAAUUAUUUCCAGGAAa 2 20 879 900 [mm9:18:46326167-46326188:-] 0.4930 123 6 -9.11 -0.1428 MIMAT0003471 mmu-miR-692 28105 Trim36 cucacuccGCGAGUUUCUCUa :|: |||||||| cauguucaUGUCCAAAGAGAa 2 14 523 543 [mm9:18:46326524-46326544:-] 0.5872 149 7 -12.41 -0.7110 MIMAT0004189 mmu-miR-693-3p 28105 Trim36 aaugucggUGUAGACUUUCGACg |:| | ||||||| uuaguagaAUAAC-CAAAGCUGu 2 16 1400 1421 [mm9:18:46325646-46325667:-] 0.5093 141 7 -11.61 -0.6463 MIMAT0003474 mmu-miR-694 28105 Trim36 gaaguccguuguAAAAGUc |||||| gcaaagaauuauUUUUCAg 2 8 946 964 [mm9:18:46326103-46326121:-] 0.5435 120 6 -7.80 -0.1019 MIMAT0004826 mmu-miR-146b* 28105 Trim36 uggUCUUGACUCAGGGAUCCcg || || | |:|||||| uaaAGUACAAAAUUCCUAGGaa 3 20 1206 1227 [mm9:18:46325840-46325861:-] 0.5466 139 0 -12.92 -0.1808 MIMAT0003485 mmu-miR-455* 28105 Trim36 gcuacAUCAGGUUUCCGUGUAu | |||: ||||||| gcccaUUGUCU---GGCACAUg 2 18 801 819 [mm9:18:46326248-46326266:-] 0.5135 141 7 -14.62 -0.3585 MIMAT0003742 mmu-miR-455 28105 Trim36 cacauauacgggcACCUGACg ||||||| uuacuagggaagaUGGACUGa 2 9 967 987 [mm9:18:46326080-46326100:-] 0.5100 140 7 -12.38 -0.7743 MIMAT0003487 mmu-miR-697 28105 Trim36 agaggUGUCCUGGUCCUACAa | | || ||||||| auggaAAAUCACAAGGAUGUg 2 17 1233 1253 [mm9:18:46325814-46325834:-] 0.4885 148 7 -13.81 -0.3931 MIMAT0003492 mmu-miR-702 28105 Trim36 cucgcCCCAUUUCCCACCCGu || | | ||||||| ggcuaGGAUUAUAGGUGGGCa 2 17 209 229 [mm9:18:46326838-46326858:-] 0.4976 148 7 -19.68 -0.5332 MIMAT0003496 mmu-miR-706 28105 Trim36 aaAAAACUCUGUCCCAAAGAGa ||| |||:||||||||||| uuUUUCGAGGCAGGGUUUCUCu 2 21 1435 1456 [mm9:18:46325611-46325632:-] 0.4807 188 7 -32.06 -0.1030 MIMAT0003511 mmu-miR-450b-5p 28105 Trim36 auaaguccUUGUAUGACGUUUu ||: | ||||||| ugaauguuAAU-UUCUGCAAAa 2 15 1283 1303 [mm9:18:46325764-46325784:-] 0.5444 144 7 -10.10 -1.2426 MIMAT0004841 mmu-miR-871 28105 Trim36 guACUGACCGUGAUUAGA-CUUAu || || |||::||| |||| ucUGUCU-UAACUGGUCUAGAAUa 2 22 337 359 [mm9:18:46326708-46326730:-] 0.5346 123 0 -16.56 -0.7332 MIMAT0004856 mmu-miR-105 28105 Trim36 ugguguucgUAG-ACUCGUGAACc :|| | |||||||| cauugugugGUCAUAAGCACUUGu 2 15 1170 1193 [mm9:18:46325874-46325897:-] 0.5466 149 7 -14.66 -0.5318 MIMAT0004882 mmu-miR-466f-3p 28105 Trim36 cacacauacaCACACACAUAc || ||||||| uaaguagaaaGU-UGUGUAUu 2 12 666 685 [mm9:18:46326382-46326401:-] 0.6191 141 7 -9.08 -1.0688 MIMAT0004892 mmu-miR-568 28105 Trim36 cacacAUA--UGUAAAUAU-GUa ||| |:||||||| || gaaaaUAUUCAUAUUUAUAGCAa 2 16 927 949 [mm9:18:46326118-46326140:-] 0.5460 122 0 -5.83 -1.2467 MIMAT0004898 mmu-miR-654-3p 28105 Trim36 uuccacuaccaGUCGUCUGUAu :| ||||||| cagcauugaaaUACCAGACAUg 2 12 1104 1125 [mm9:18:46325942-46325963:-] 0.5466 143 7 -10.86 -0.4209 MIMAT0004930 mmu-miR-466d-5p 28105 Trim36 guACAUGUACAUGC-GU-GUGUGu | |||:| | :| || ||||| caUUUACGUCUCUGUCACCACACc 2 21 77 100 [mm9:18:46326967-46326990:-] 0.5788 123 0 -14.67 -0.5815 MIMAT0004938 mmu-miR-875-3p 28105 Trim36 guaucggaGUCAUAAAAGUCc || |:||||||| cacuaagaCA-UGUUUUCAGc 2 14 1353 1372 [mm9:18:46325695-46325714:-] 0.5390 147 7 -10.38 -0.3757 MIMAT0004938 mmu-miR-875-3p 28105 Trim36 guaucggagucaUAAAAGUCc |||||||| aguucacugcccAUUUUCAGc 2 10 1084 1104 [mm9:18:46325963-46325983:-] 0.5466 145 7 -12.25 -0.3161 MIMAT0004938 mmu-miR-875-3p 28105 Trim36 guaucggagUCAU-AAAAGUCc | || ||||||| uagcaaagaAUUAUUUUUCAGa 2 13 944 965 [mm9:18:46326102-46326123:-] 0.5435 143 7 -9.83 -1.2341 MIMAT0004862 mmu-miR-877* 28105 Trim36 acccuccuccCUCUUCU-CCUGu |:||||| |||| agaauuacuaGGGAAGAUGGACu 2 13 963 985 [mm9:18:46326082-46326104:-] 0.5100 120 0 -15.96 -0.3684 MIMAT0004940 mmu-miR-511 28105 Trim36 acUCACGUCUCGUUUUCCGua :|| | | |||||| uaGGUAAAAUGACAAAGGCca 3 20 628 648 [mm9:18:46326419-46326439:-] 0.6191 123 0 -7.43 -0.1329 MIMAT0005830 mmu-miR-466l 28105 Trim36 uuauacACACGU-ACAUAAAUAu ||| :| | ||||||| caaagcUGUUUAUUUUAUUUAUu 2 17 1413 1435 [mm9:18:46325632-46325654:-] 0.4950 151 7 -5.23 -0.8893 MIMAT0005830 mmu-miR-466l 28105 Trim36 uuaUACAC-ACG-UACAUAAAUAu :|| | | | | |||||||| gggGUGGGAUACAAAGUAUUUAUu 2 20 453 476 [mm9:18:46326591-46326614:-] 0.5553 149 7 -9.12 -0.2527 MIMAT0005830 mmu-miR-466l 28105 Trim36 uuauacACACGUACAUAAAUAu | | || ||||||| agaaaaUAUUCA--UAUUUAUa 2 17 926 945 [mm9:18:46326122-46326141:-] 0.5460 141 7 -4.56 -1.0858 MIMAT0005830 mmu-miR-466l 28105 Trim36 uuauacacacguacaUAAAUAu |||||| uuaauagaaaaauaaAUUUAUa 2 8 604 625 [mm9:18:46326442-46326463:-] 0.6191 120 6 -3.66 -0.1676 MIMAT0005833 mmu-miR-669d 28105 Trim36 uguaUAUGUACGUGUGUG-UUCa | |::| || |||| ||| guuaAAAUGUCCAGACACUAAGa 2 19 1338 1360 [mm9:18:46325707-46325729:-] 0.5688 122 0 -9.23 -0.8428 MIMAT0005834 mmu-miR-466i 28105 Trim36 aucACACAUACA--CACACACAUa ||||||| | ||||||| aguUGUGUAUUUUAAAGUGUGUAa 2 20 675 698 [mm9:18:46326369-46326392:-] 0.6191 158 7 -16.39 -1.2076 MIMAT0005836 mmu-miR-1186 28105 Trim36 guacggaaAUUAAGGUCGUGAg |: ||:||||||| cuaagacaUGUUUUCAGCACUg 2 15 1355 1376 [mm9:18:46325691-46325712:-] 0.5390 154 7 -17.95 -0.5597 MIMAT0005836 mmu-miR-1186 28105 Trim36 guacggaaaUUA-AGGUC-GUGAg ||| ||||| |||| aaaaguuaaAAUGUCCAGACACUa 2 14 1334 1357 [mm9:18:46325710-46325733:-] 0.5688 120 0 -13.21 -0.7979 MIMAT0005853 mmu-miR-669e 28105 Trim36 uacUUGUACGUGUGUG-UUCUGu ||::| || |||| ||||| uaaAAUGUCCAGACACUAAGACa 2 20 1340 1362 [mm9:18:46325705-46325727:-] 0.5688 135 0 -16.16 -0.6815 MIMAT0005858 mmu-miR-1197 28105 Trim36 ucuucaucUGGUACACAGGAu | || ||||||| acaucucuAACA-GUGUCCUu 2 14 773 792 [mm9:18:46326275-46326294:-] 0.5135 143 7 -13.54 -0.3221 MIMAT0009392 mmu-miR-1929 28105 Trim36 gagacgagauaUUUCAGGAUCUu ||| ||||||: aguaaaguacaAAAUUCCUAGGa 2 13 1204 1226 [mm9:18:46325841-46325863:-] 0.5466 136 0 -13.12 -0.1590 MIMAT0009400 mmu-miR-1936 28105 Trim36 cggUCAAGUGUCGUCCAGUCAAu || :::: | ||||||| acaAGGAUGUGUCUAGUCAGUUu 2 21 1243 1265 [mm9:18:46325802-46325824:-] 0.4885 144 7 -12.14 -0.8652 MIMAT0009425 mmu-miR-1954 28105 Trim36 uuguccCAGAGUGAGACGUca ||: :|||||| uugaauGUUAAUUUCUGCAaa 3 16 1282 1302 [mm9:18:46325765-46325785:-] 0.5444 123 0 -9.02 -0.1862 MIMAT0009431 mmu-miR-1958 28105 Trim36 ugAAUGACGAAGGUGAAAGGAu ||::| :||:: :|||||| gcUUGUUUUUUUUUUUUUCCUu 2 21 489 510 [mm9:18:46326557-46326578:-] 0.5553 148 6 -16.15 -0.1097 MIMAT0009431 mmu-miR-1958 28105 Trim36 ugaauGACGAAGGUGAA-AGGAu :||:||: ||| |||| auucuUUGUUUUGUCUUGUCCUg 2 18 116 138 [mm9:18:46326929-46326951:-] 0.4818 121 0 -13.89 -0.2013 MIMAT0009433 mmu-miR-1960 28105 Trim36 ucgGGAGAAGAUUGUCGUGACc | | ||:| |||||||| agaCAUGUUUU--CAGCACUGa 2 20 1358 1377 [mm9:18:46325690-46325709:-] 0.5390 152 7 -14.57 -0.5382 MIMAT0009444 mmu-miR-1970 28105 Trim36 guuucGGAUAGGG-GUCACUGUGu |:|:|||: | ||||||| uuuguCUUGUCCUGCUGUGACACa 2 19 125 148 [mm9:18:46326919-46326942:-] 0.4818 161 7 -25.68 -0.2072 MIMAT0009459 mmu-miR-1982* 28105 Trim36 ggaGGGGUCCUGGGAGGGUu ||:| | ||||||| cugCCUCUG---CCUCCCAa 2 18 1522 1538 [mm9:18:46325529-46325545:-] 0.4827 141 7 -21.14 -0.1863 MIMAT0012774 mmu-miR-664 28105 Trim36 auccgaccccUCAUUUACUUAu :| |||||||| uucaucgccuGGCAAAUGAAUa 2 13 711 732 [mm9:18:46326335-46326356:-] 0.5828 148 7 -12.34 -0.5576 MIMAT0000128 mmu-miR-30a 28105 Trim36 gaaggucagcuccuACAAAUGu ||||||| gguuuuaugguuuuUGUUUACa 2 9 1053 1074 [mm9:18:46325993-46326014:-] 0.5679 140 7 -10.78 -1.1058 MIMAT0000130 mmu-miR-30b 28105 Trim36 ucgacucacauccuACAAAUGu ||||||| gguuuuaugguuuuUGUUUACa 2 9 1053 1074 [mm9:18:46325993-46326014:-] 0.5679 140 7 -10.56 -1.1035 MIMAT0000133 mmu-miR-101a 28105 Trim36 aagucaauaguguCAUGACAu ||||||| accacaccuguuuGUACUGUg 2 9 93 113 [mm9:18:46326954-46326974:-] 0.5242 140 7 -13.50 -0.4371 MIMAT0000134 mmu-miR-124 28105 Trim36 ccguaaguggcgcACGGAAu |||||| ugauuauuugaauUGCCUUu 2 8 1312 1331 [mm9:18:46325736-46325755:-] 0.5566 120 6 -9.74 -0.1226 MIMAT0004528 mmu-miR-125a-3p 28105 Trim36 ccGA-GGGUUCUUGGAGUG-GACa || :|| :||| ||||| ||| ggCUGUCCUGGAA-CUCACUCUGu 2 21 1467 1489 [mm9:18:46325578-46325600:-] 0.4827 125 0 -25.53 -0.1468 MIMAT0000142 mmu-miR-9 28105 Trim36 aguAUGUCGAUC-UAUUGGUUUCu | :|| ||| |||||||||| cauUUUAG-UAGAAUAACCAAAGc 2 21 1396 1418 [mm9:18:46325649-46325671:-] 0.5093 165 7 -18.72 -0.9668 MIMAT0000147 mmu-miR-135a 28105 Trim36 agugUAUCCUU---AUU--UUUCGGUAu ||| ||| |:| |||||||| gaggAUAAGAACCGUGAACAAAGCCAUg 2 20 24 51 [mm9:18:46327016-46327043:-] 0.5818 153 7 -14.72 -0.3654 MIMAT0000147 mmu-miR-135a 28105 Trim36 agUGUAUCCUUAUUUUUCGGUAu | | | |:|| ||||||| auAGAAACUAGUACUAAGCCAUg 2 22 565 587 [mm9:18:46326480-46326502:-] 0.6191 153 7 -12.98 -0.6000 MIMAT0000155 mmu-miR-142-3p 28105 Trim36 agguauuucauccuuuGUGAUGu |||||| aacccgugcaacuuuuCACUACa 2 8 858 880 [mm9:18:46326187-46326209:-] 0.5372 120 6 -14.69 -0.2299 MIMAT0000208 mmu-miR-10b 28105 Trim36 guguuuaagccaagaUGUCCCAu ||||||| guuucauauaaaaacACAGGGUu 2 9 831 853 [mm9:18:46326214-46326236:-] 0.5254 140 7 -12.58 -0.2347 MIMAT0000209 mmu-miR-129-5p 28105 Trim36 cguucgggucUGGCGUUUUUc |: |||||:| auucauauuuAUAGCAAAGAa 2 12 933 953 [mm9:18:46326114-46326134:-] 0.5435 127 0 -6.44 -0.1228 MIMAT0000210 mmu-miR-181a 28105 Trim36 ugAGUGGCUGUCGCAACUUACAa |: :| ||| |||||||| ucUUUUCUACA---UUGAAUGUu 2 22 1271 1290 [mm9:18:46325777-46325796:-] 0.5444 149 7 -13.24 -1.0394 MIMAT0000215 mmu-miR-186 28105 Trim36 ucggguuuuccucUUAAGAAAc :||||||| guuuguacuguguGAUUCUUUg 2 10 102 123 [mm9:18:46326944-46326965:-] 0.5242 141 7 -10.47 -0.1939 MIMAT0000220 mmu-miR-190 28105 Trim36 ugGAUUAUAUAGUUUGUAUAGu :|||| || : ||||||| ugUUAAUCUAAU-UACAUAUCa 2 21 58 78 [mm9:18:46326989-46327009:-] 0.5818 154 7 -13.87 -1.1938 MIMAT0000235 mmu-miR-202-3p 28105 Trim36 agaAGGGUACGCGAUAU-GGAGa ||: | :|:|||| |||| aacUCUGUUCUGUUAUAGCCUCu 2 20 182 204 [mm9:18:46326863-46326885:-] 0.4976 123 0 -17.71 -0.1210 MIMAT0000248 mmu-miR-30e 28105 Trim36 gaaggucaguuccuACAAAUGu ||||||| gguuuuaugguuuuUGUUUACa 2 9 1053 1074 [mm9:18:46325993-46326014:-] 0.5679 140 7 -11.48 -1.1104 MIMAT0000368 mmu-miR-291a-3p 28105 Trim36 cguGUGUUUCACC----UUCGUGAAa ||: : |||| |||||||| gcuCAUUGUGUGGUCAUAAGCACUUg 2 20 1167 1192 [mm9:18:46325875-46325900:-] 0.5466 150 7 -18.25 -0.3582 MIMAT0000372 mmu-miR-294 28105 Trim36 uguguguuuucccUUCGUGAAa |||||||| auuguguggucauAAGCACUUg 2 10 1171 1192 [mm9:18:46325875-46325896:-] 0.5466 145 7 -9.39 -0.3582 MIMAT0000373 mmu-miR-295 28105 Trim36 ucUGAGU-UUUCAUCA----UCGUGAAa :|||| : ||:|| ||||||| ggGCUCAUUGUGUGGUCAUAAGCACUUg 2 22 1165 1192 [mm9:18:46325875-46325902:-] 0.5466 147 7 -21.81 -0.3582 MIMAT0000380 mmu-miR-302a 28105 Trim36 aguGGUUUUGUACC----UUCGUGAAu :|| :::||| |||||||| ggcUCAUUGUGUGGUCAUAAGCACUUg 2 21 1166 1192 [mm9:18:46325875-46325901:-] 0.5466 147 7 -17.46 -0.3525 MIMAT0000381 mmu-miR-34c 28105 Trim36 cgUUAGUCGAUUGAUGUGACGGa |||| | || | ||||||| caAAUCUGAGAAGUUCACUGCCc 2 22 1073 1095 [mm9:18:46325972-46325994:-] 0.5466 165 7 -18.06 -0.7650 MIMAT0000382 mmu-miR-34b-5p 28105 Trim36 ugUUAGUCGAUUAAUGUGACGGa |||| | || | ||||||| caAAUCUGAGAAGUUCACUGCCc 2 22 1073 1095 [mm9:18:46325972-46325994:-] 0.5466 165 7 -18.25 -0.7650 MIMAT0000514 mmu-miR-30c 28105 Trim36 cgACUCUC-ACAUCCU----ACAAAUGu | ||:| | || |: ||||||| caUCAGGGUUUUAUGGUUUUUGUUUACa 2 22 1047 1074 [mm9:18:46325993-46326020:-] 0.5679 143 7 -14.90 -1.1035 MIMAT0000515 mmu-miR-30d 28105 Trim36 gaaggucagccccuACAAAUGu ||||||| gguuuuaugguuuuUGUUUACa 2 9 1053 1074 [mm9:18:46325993-46326014:-] 0.5679 140 7 -12.59 -1.1058 MIMAT0000542 mmu-miR-34a 28105 Trim36 ugUUGGUCGAUUC-UGUGACGGu ||:| | ||| ||||||| caAAUCUGAGAAGUUCACUGCCc 2 21 1073 1095 [mm9:18:46325972-46325994:-] 0.5466 155 7 -19.74 -0.7687 MIMAT0000567 mmu-miR-329 28105 Trim36 uuuuuccaaucgaccCACACAa |||||| guuguguauuuuaaaGUGUGUa 2 8 676 697 [mm9:18:46326370-46326391:-] 0.6191 120 6 -7.23 -0.1549 MIMAT0004651 mmu-miR-340-5p 28105 Trim36 uuagucagaguaacgAAAUAUu |||||| uaauagaaaaauaaaUUUAUAg 2 8 605 626 [mm9:18:46326441-46326462:-] 0.6191 120 6 -5.14 -0.1471 MIMAT0000612 mmu-miR-135b 28105 Trim36 agugUAUCCUU---ACU--UUUCGGUAu ||| ||| ||| |||||||| gaggAUAAGAACCGUGAACAAAGCCAUg 2 20 24 51 [mm9:18:46327016-46327043:-] 0.5818 157 7 -16.53 -0.3654 MIMAT0000612 mmu-miR-135b 28105 Trim36 agugUAUCCUU-A-CUU--UUCGGUAu |||| || | | | ||||||| acugAUAGAAACUAGUACUAAGCCAUg 2 20 561 587 [mm9:18:46326480-46326506:-] 0.6191 148 7 -12.49 -0.6000 MIMAT0000616 mmu-miR-101b 28105 Trim36 aaGUCGAUAGUGUCAUGACAu || ||:| : ||||||| caCACCUGU--UUGUACUGUg 2 20 95 113 [mm9:18:46326954-46326972:-] 0.5242 148 7 -17.08 -0.4307 MIMAT0000648 mmu-miR-10a 28105 Trim36 guguuuaagccuagaUGUCCCAu ||||||| guuucauauaaaaacACAGGGUu 2 9 831 853 [mm9:18:46326214-46326236:-] 0.5254 140 7 -12.58 -0.2326 MIMAT0000656 mmu-miR-139-5p 28105 Trim36 gaCCUCUGUGCACGUG-ACAUCu | :| ||: |||| ||||| guGUGGUCAUAAGCACUUGUAGu 2 21 1174 1196 [mm9:18:46325871-46325893:-] 0.5466 124 0 -18.21 -0.3268 MIMAT0000661 mmu-miR-214 28105 Trim36 ugAC-GGACAGACAC-GGACGACa || ::||||| || ||||||| uuUGUUUUGUCU-UGUCCUGCUGu 2 21 120 142 [mm9:18:46326925-46326947:-] 0.4818 160 7 -26.02 -0.2644 MIMAT0000673 mmu-miR-181b 28105 Trim36 uggguggcugucGUUACUUACAa || ||||||| auaucuuuucuaCAUUGAAUGUu 2 12 1268 1290 [mm9:18:46325777-46325799:-] 0.5444 147 7 -12.33 -1.0394 MIMAT0000674 mmu-miR-181c 28105 Trim36 ugAGUGGCUGUCCAACUUACAa |: :| ||| |||||||| ucUUUUCUACA--UUGAAUGUu 2 21 1271 1290 [mm9:18:46325777-46325796:-] 0.5444 153 7 -13.63 -1.0394 MIMAT0000704 mmu-miR-361 28105 Trim36 cauggggaccucuAAGACUAuu ||||||| cugcaaaauuaccUUCUGAUua 3 10 1296 1317 [mm9:18:46325750-46325771:-] 0.5444 125 0 -8.73 -0.1261 MIMAT0000704 mmu-miR-361 28105 Trim36 caUGGGGACCU-CUAA-GACUAUu |::::|| | | || |||||| auAUUUUUGAAUGCUUACUGAUAg 2 21 545 568 [mm9:18:46326499-46326522:-] 0.6191 123 6 -12.81 -1.0370 MIMAT0004684 mmu-miR-362-3p 28105 Trim36 acuuaggaacuugucCACACAa |||||| guuguguauuuuaaaGUGUGUa 2 8 676 697 [mm9:18:46326370-46326391:-] 0.6191 120 6 -7.23 -0.1549 MIMAT0000741 mmu-miR-377 28105 Trim36 uguuuuCAACGGAAACACACUa ||| : ||||||| acaccuGUUUGUACUGUGUGAu 2 17 96 117 [mm9:18:46326950-46326971:-] 0.5242 144 7 -13.68 -0.4091 MIMAT0000743 mmu-miR-379 28105 Trim36 ggaUGCAAGGUAUCA-GAUGGu |||| ||| || ||||| uccACGU--CAUUGUCCUACCu 2 19 291 310 [mm9:18:46326757-46326776:-] 0.5534 123 0 -17.33 -0.5834 MIMAT0000748 mmu-miR-383 28105 Trim36 ucgGUGUCAGUGGAAGACUAGa || | |:||||||||||: cugCAAAAUUACCUUCUGAUUa 2 20 1296 1317 [mm9:18:46325750-46325771:-] 0.5444 159 0 -19.32 -0.1224 MIMAT0000766 mmu-miR-335-5p 28105 Trim36 ugUAAAAAGCAAUAACGAG-AACu ||| ||:|| : |||| ||| gcAUUAUUUGUGG--GCUCAUUGu 2 22 1154 1175 [mm9:18:46325892-46325913:-] 0.5466 122 0 -16.29 -0.1540 MIMAT0004745 mmu-miR-384-5p 28105 Trim36 ugUAACGGAUCCUUAACAAAUGu :|| : |:| |||||||| ggGUUUUAUGGUUUUUGUUUACa 2 22 1052 1074 [mm9:18:46325993-46326015:-] 0.5679 153 7 -15.08 -1.1035 MIMAT0001076 mmu-miR-384-3p 28105 Trim36 uaaCACUUGUUAAAGAUCCUUa || | |||| ||||||| aaaGUACAAAAUUCCUAGGAAa 2 20 1207 1228 [mm9:18:46325839-46325860:-] 0.5466 163 7 -11.82 -1.0435 MIMAT0001542 mmu-miR-449a 28105 Trim36 uggUCGAUUGUU-AUGUGACGGu | ||:| || | ||||||| caaAUCUGAGAAGUUCACUGCCc 2 20 1073 1095 [mm9:18:46325972-46325994:-] 0.5466 158 7 -17.73 -0.7613 MIMAT0003168 mmu-miR-543 28105 Trim36 uucuucACGUGGCGCUUACAAa | :|| :||||||| aucuuuUCUACAUUGAAUGUUa 2 17 1270 1291 [mm9:18:46325776-46325797:-] 0.5444 148 7 -10.24 -1.2189 MIMAT0003168 mmu-miR-543 28105 Trim36 uucuucACGUGGCGCUUACAAa ||:| :| ||||||| ugaucaUGUA-UG-GAAUGUUa 2 17 1375 1394 [mm9:18:46325673-46325692:-] 0.5093 144 7 -10.55 -0.7651 MIMAT0003172 mmu-miR-542-3p 28105 Trim36 aaAGUCAAUAGUUAGACAGUGu ||| ||| |||||||| uaUCAUUUACGUCUCUGUCACc 2 21 74 95 [mm9:18:46326972-46326993:-] 0.5788 160 7 -15.95 -0.6550 MIMAT0003182 mmu-miR-494 28105 Trim36 cuccAAAGGGCACAUACAA-AGu ||||| | ||||| || auuaUUUCCAGGAAAUGUUAUCu 2 19 886 908 [mm9:18:46326159-46326181:-] 0.5115 122 0 -8.88 -0.8911 MIMAT0003374 mmu-miR-302b 28105 Trim36 gaugauuuuGUACCUUCGUGAAu ||| |||||||| uugugugguCAU--AAGCACUUg 2 15 1172 1192 [mm9:18:46325875-46325895:-] 0.5466 147 7 -14.22 -0.3525 MIMAT0003377 mmu-miR-302d 28105 Trim36 ugUGAGU-UUGUACC----UUCGUGAAu :|||| :::||| |||||||| ggGCUCAUUGUGUGGUCAUAAGCACUUg 2 22 1165 1192 [mm9:18:46325875-46325902:-] 0.5466 151 7 -20.24 -0.3525 MIMAT0003727 mmu-miR-374 28105 Trim36 gugaaucGUCCAACAUAAU-AUa ||| ||||||| || uagaccaCAGACUGUAUUAGUAa 2 16 748 770 [mm9:18:46326297-46326319:-] 0.5300 123 0 -9.69 -0.3787 MIMAT0003893 mmu-miR-761 28105 Trim36 acAC-AGUCAAAGUGGGACGACg || |: || |:::||||||| uuUGUUUUGUCUUGUCCUGCUGu 2 21 120 142 [mm9:18:46326925-46326947:-] 0.4818 159 7 -20.32 -0.2738 MIMAT0003460 mmu-miR-449c 28105 Trim36 ggUCGA-UCGUUACGUGACGGa | || || |:| ||||||| aaAUCUGAGAAGUUCACUGCCc 2 20 1074 1095 [mm9:18:46325972-46325993:-] 0.5466 158 7 -16.33 -0.7650 MIMAT0004324 mmu-miR-181d 28105 Trim36 uggguggcuGUUGUUACUUACAa | ||| ||||||| auaucuuuuCUACAUUGAAUGUu 2 15 1268 1290 [mm9:18:46325777-46325799:-] 0.5444 154 7 -13.18 -1.0394 MIMAT0004324 mmu-miR-181d 28105 Trim36 uggGUGGCUGUUGU-UA-CUUACAa |||:||: |:: || |||||| cagCACUGAUCAUGUAUGGAAUGUu 2 21 1369 1393 [mm9:18:46325674-46325698:-] 0.5093 131 6 -17.74 -0.8148 MIMAT0004852 mmu-miR-190b 28105 Trim36 uugGGUUAUAGU-UUGUAUAGu ::||| | | ||||||| augUUAAUCUAAUUACAUAUCa 2 19 57 78 [mm9:18:46326989-46327010:-] 0.5818 149 7 -15.20 -1.1938 MIMAT0004889 mmu-miR-504 28105 Trim36 cuaucuCACGUCUG-GUCCCAGa ||| | || ||||||| ccugcuGUG-ACACACAGGGUCu 2 17 135 156 [mm9:18:46326911-46326932:-] 0.4910 149 7 -19.80 -0.1696 MIMAT0005447 mmu-miR-449b 28105 Trim36 cggUCGAUUGUU---GUGACGGa | ||:| || ||||||| caaAUCUGAGAAGUUCACUGCCc 2 18 1073 1095 [mm9:18:46325972-46325994:-] 0.5466 148 7 -15.45 -0.7650 MIMAT0004936 mmu-miR-873 28105 Trim36 uccucuGAGUGUUCAAG-GACg || | |||||| ||| acaaauCUGAGAAGUUCACUGc 2 16 1072 1093 [mm9:18:46325974-46325995:-] 0.5466 123 0 -17.13 -0.2432

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G066004 Trim36 Mus musculus 28105

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Trim36 mmu-miR-664 beg:714 end:733 pic:3' ATCCGACCCCTCATTTACTTAT 5'& | |||| ||||||||| &5' --GCCTGGC----AAATGAATA 3' Trim36 mmu-miR-1954 beg:843 end:868 pic:3' TTGTCCC-AGAG--TGAG-ACGTCA 5'& |||||| |||. || | |||| &5' -ACAGGGTTCTTGAACCCGTGCA-- 3' Trim36 mmu-miR-1186 beg:1358 end:1376 pic:3' GTACGGAAATTAAGGTCGTGAG 5'& ||||. ||.||||||| &5' CATGT------TTTCAGCACT- 3' Trim36 mmu-miR-504 beg:1040 end:1058 pic:3' CTATCTCACGTCTGGTCCCAGA 5'& ||.| |.||||||.| &5' -------TGTACATCAGGGTTT 3' Trim36 mmu-miR-1954 beg:1440 end:1464 pic:3' TTGTCCCAGAGTGAGACGTCA 5'& ..||||||.|| || ||.||| &5' GGCAGGGTTTCTCTGTGTAGT 3' Trim36 mmu-miR-504 beg:134 end:157 pic:3' CTATCTCACGT--CTG---GTCCCAGA 5'& ||| ||| |||||||| &5' -------TGCTGTGACACACAGGGTCT 3' Trim36 mmu-miR-1197 beg:780 end:792 pic:3' TCTTCATCTGGTACACAGGAT 5'& || ||||||| &5' ----------CA-GTGTCCT- 3' Trim36 mmu-miR-1193 beg:160 end:180 pic:3' CTATCAT-TTTGCCCACTGGAT 5'& .|||| |..|||| ||| &5' -GTAGTCCAGGCGGG---CCT- 3' Trim36 mmu-miR-1195 beg:1488 end:1513 pic:3' ACTCGTCCGACCGGAGCTTGAGT 5'& || |||||||||||.||||||| &5' -GACCAGGCTGGCCTTGAACTCA 3' Trim36 mmu-miR-1195 beg:1455 end:1484 pic:3' AC-TCGT--CCGACCGGAGCTTGAGT 5'& || ||. ||||| ||| ||||||| &5' TGTAGTCCTGGCTGTCCTGGAACTCA 3' Trim36 mmu-miR-1197 beg:294 end:308 pic:3' TCTTCATCTGGTACACAGGAT 5'& .||| ||||||| &5' ---------TCAT-TGTCCTA 3' Trim36 mmu-miR-1197 beg:576 end:595 pic:3' TCTTCATCTGGTACACAGGAT 5'& || |||||||||.|. &5' -----TAAGCCATGTGTCTTG 3' Trim36 mmu-miR-1-2-as beg:676 end:698 pic:3' ACCTTACATTTC--TTCATACAT 5'& .|||| ||||.|||| &5' ----GTGTATTTTAAAGTGTGTA 3' Trim36 mmu-miR-1839-5p beg:1517 end:1533 pic:3' GTTCTGGACAAGATAGATGGAA 5'& .|||| |||.||| &5' ----GCCTGCC---TCTGCCT- 3' Trim36 mmu-miR-1893 beg:846 end:867 pic:3' GCTCCGCAGGT-CGCGGGCGCGG 5'& ||| ||.| | ||||.|| &5' --AGG-GTTCTTGAACCCGTGC- 3' Trim36 mmu-miR-1897-5p beg:519 end:540 pic:3' GGGGGAGAAAGAG-GTAGGTTTC 5'& || .|| ..||||||| &5' -----TCATGTTCATGTCCAAAG 3' Trim36 mmu-miR-1897-5p beg:377 end:400 pic:3' GGGGGAGAAAGAGGTAGGTTTC 5'& ||..|||||| ||| ||..| &5' CCTTCTCTTTGGCCA--CAGGG 3' Trim36 mmu-miR-1929 beg:1459 end:1480 pic:3' GAGACGAGATATTTCAGGATCTT 5'& | ||. |||||.||| &5' ----GTCCTGGCT-GTCCTGGAA 3' Trim36 mmu-miR-1929 beg:1193 end:1227 pic:3' GAGACG---AGATATTTC--------AGGATCTT 5'& ||. || .||||| ||||||.| &5' ---TGTGAATCAGTAAAGTACAAAATTCCTAGGA 3' Trim36 mmu-miR-1930 beg:318 end:334 pic:3' TGCGACGTCCATGATACCTCCA 5'& | || .|||||| &5' -----GTGGGA---GTGGAGG- 3' Trim36 mmu-miR-1935 beg:1509 end:1534 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& ||| |||.||| |||||||||| &5' AGAAATCTGCCTGCCTCTGCCT 3' Trim36 mmu-miR-1937a beg:1536 end:1550 pic:3' ACCCCCGAGCA-GGCCCTAA 5'& || |.|||||| &5' ---------GTGCTGGGATT 3' Trim36 mmu-miR-1937a beg:443 end:463 pic:3' ACCCCCGAGCAGGCCCTAA 5'& |||||||| | .||||| &5' TGGGGGCTGGGGTGGGAT- 3' Trim36 mmu-miR-1937b beg:442 end:463 pic:3' ACCCCCGAGCAGGCCCTA 5'& |||||||| | .||||| &5' TGGGGGCTGGGGTGGGAT 3' Trim36 mmu-miR-1937c beg:442 end:463 pic:3' ACCCCCGAGAAGGCCCTA 5'& |||||||| .||||| &5' TGGGGGCTGGGGTGGGAT 3' Trim36 mmu-miR-1941-3p beg:202 end:218 pic:3' TACCCTCTATGACGATTCTAC 5'& ||||. ||||.||| &5' ---GGAGG----GCTAGGAT- 3' Trim36 mmu-miR-1941-5p beg:81 end:106 pic:3' TTCGGAGACA-TGGTCGTAGAGGGA 5'& |.|||||| |||| || || ..| &5' --GTCTCTGTCACCA-CACCTGTTT 3' Trim36 mmu-miR-1955 beg:1527 end:1550 pic:3' TTTTCGACGTCACG--TAGGACCCTGA 5'& |||| .| ||||||.| &5' -----CTGCCTCCCAAGTGCTGGGATT 3' Trim36 mmu-miR-1957 beg:1122 end:1142 pic:3' CAGTATACGAGATGGTGAC 5'& ||.| |||. |||.|||| &5' GTTACATGT--TACTACTG 3' Trim36 mmu-miR-1960 beg:1355 end:1377 pic:3' TCGGGAGAAGATTGTCGTGACC 5'& || | ||.| |||||||| &5' AGACATGTTTT--CAGCACTG- 3' Trim36 mmu-miR-1960 beg:1090 end:1112 pic:3' TCGGG-AGAAGATTGTCGTGACC 5'& |||| |.||| |.|||||.|| &5' -GCCCATTTTC-AGCAGCATTG- 3' Trim36 mmu-miR-1961 beg:1515 end:1529 pic:3' AAGATTGAT-GATGGAGT 5'& ||. ||.|||| &5' ------CTGCCTGCCTC- 3' Trim36 mmu-miR-1962 beg:184 end:205 pic:3' TACACAGGGTCACGGTCGGAGA 5'& |||.|. || .||||||| &5' ---TGTTCT-GTTATAGCCTCT 3' Trim36 mmu-miR-1970 beg:127 end:148 pic:3' GTTTC-GGATAGGGGT-CACTGTGT 5'& | |.|.|||. |||||||| &5' ----GTCTTGTCCTGCTGTGACACA 3' Trim36 mmu-miR-1970 beg:798 end:818 pic:3' GTTTCGGATAGGGGTCACTGTGT 5'& ||| ||. .| ||.|||| &5' ----GCCCATTGTC--TGGCACA 3' Trim36 mmu-miR-1982.1 beg:442 end:462 pic:3' GACACCCTCTTGTATCCCACTCT 5'& ||||.| |.|||||.|| &5' ---TGGGGGC---TGGGGTGGGA 3' Trim36 mmu-miR-1982star beg:1518 end:1539 pic:3' GGA-GGGGTCCTGGGAGGGTT 5'& ||| ||.| |||||||| &5' CCTGCCTCTG---CCTCCCAA 3' Trim36 mmu-miR-2132 beg:84 end:105 pic:3' GTAGCGCAGT--TGTGGGCGG 5'& || .|||| |||||.|.. &5' --TC-TGTCACCACACCTGTT 3' Trim36 mmu-miR-2145 beg:1488 end:1507 pic:3' TTGGTCCGGGCTGGGACGA 5'& .|||||| |.|.||.|| &5' GACCAGG-CTGGCCTTG-- 3' Trim36 mmu-miR-2145 beg:1512 end:1532 pic:3' TTGGTCCGGGCTGGGACGA 5'& ||.| |||.| |.|||| &5' AATCT-GCCTGCCTCTGC- 3' Trim36 mmu-miR-2861 beg:1515 end:1535 pic:3' GGCGGGCGGCGGTCCGGGG 5'& |.|||.||| |. |||.| &5' CTGCCTGCCTCT--GCCTC 3' Trim36 mmu-miR-3099 beg:331 end:355 pic:3' AGGGGTTGGAGAGA---GATCGGAT 5'& | .|| ||| ||.|.||| &5' ----CTTTCTGTCTTAACTGGTCTA 3' Trim36 mmu-miR-432 beg:888 end:899 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& .||||.|| &5' ---------------TTCCAGGA 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Trim36 mmu-let-7b 270 301 -UUGGUGUGUUGGAUGA-------UGGAGU- :||: |||||||| | || ||| GGACUUCACAACCUUGUCUCUUCCACGUCAU Trim36 mmu-let-7e 1507 1530 -UGAUAUGUUGGA-GGAUGGAGU ||| ||:|| |||:|||| AACUCAGAAAUCUGCCUGCCUCU Trim36 mmu-miR-101a 78 115 GAAGU-CA---AUAGUGU----------CAUGACAU- ||:| || |:|||| |||||||: AUUUACGUCUCUGUCACCACACCUGUUUGUACUGUGU Trim36 mmu-miR-124a 1543 1564 -CCGUAAG--UGGCGCACGGAAU || ||| : :|:||||| UGGGAUUAAAGGUGUGUGCCA-- Trim36 mmu-miR-128a 1440 1461 UUUUCUCUGG-CCAAGU-GACACU |||:| ||||: ||||| ---CGAGGCAGGGUUUCUCUGUGU Trim36 mmu-miR-128b 1440 1461 CUUUCUCUGG-CCAAGU-GACACU |||:| ||||: ||||| ---CGAGGCAGGGUUUCUCUGUGU Trim36 mmu-miR-135a 623 652 AGUGUAUCC---UUAUU--UUUCGGUAU- :| ||||| |||:| ||:|||||| AUAGAUAGGUAAAAUGACAAAGGCCAUAA Trim36 mmu-miR-135b 623 652 -GUGUAUCC---UUACU--UUUCGGUAU- :| ||||| ||||| ||:|||||| AUAGAUAGGUAAAAUGACAAAGGCCAUAA Trim36 mmu-miR-136 290 325 -AGGUAGUAGUUU------------UGUUUACCUCA |||| |:||| |||||||| | UUCCA-CGUCAUUGUCCUACCUAUUACAAAUGGUGG Trim36 mmu-miR-138 90 106 CUAAGUGUUGUGGUCGA- |||| ||||| |:| --GUCACCACACCUGUUU Trim36 mmu-miR-140* 1159 1182 -AGGCACCA-AGAUGGGACACCAU | |||| || |:: |||||| AUUUGUGGGCUC-AUUGUGUGGUC Trim36 mmu-miR-144 80 115 GAUCAUGUAG---------------UAGAUAUGACAU- |||:|| :|:|:||||||: ---UUACGUCUCUGUCACCACACCUGUUUGUACUGUGU Trim36 mmu-miR-150 443 463 GUGACCA-UGUUCCCAACCCUCU :||| :| :||| ||||| -UUUGGGGGCUGGGG-UGGGAU- Trim36 mmu-miR-152 117 146 -GGGUUCAAGACAGU-----ACGUGACU- :|: |||:|||| ||| ||| UUCUUUGUUUUGUCUUGUCCUGCUGUGAC Trim36 mmu-miR-181c 1371 1395 UGAGUGGCU-GUCCAA--CUUACAA- |||:|| || || ||||||| --GCACUGAUCAUGUAUGGAAUGUUA Trim36 mmu-miR-190 50 80 -UGGAUUAUAUAGUU-------UGUAUAGU- :||| ||:|:|| |||||||| UGCCUUG-AUGUUAAUCUAAUUACAUAUCAU Trim36 mmu-miR-196a 1099 1120 -GGUUGUUGUA-CUUUGAUGGAU :||:||:||| |||| |||| UUCAGCAGCAUUGAAA-UACCA- Trim36 mmu-miR-199a* 689 706 UUGGUUACACGUCUGAUGACAU |:||||:| ||||||| ---AAGUGUGUA-ACUACUGA- Trim36 mmu-miR-200a 1105 1130 -UGUAGCA--AUGGUCUGUCACAAU- :|||:| ||||||||| ||||| AGCAUUGAAAUACCAGACA-UGUUAC Trim36 mmu-miR-201 147 167 UCUUGUUACGGAAUGACUCAU- ||| |:|||:||| ||| --CACAGGGUCUUGCUGUGUAG Trim36 mmu-miR-202 1526 1564 -AGA---AGGGUACGCGA--------------UAUGGAGA ||| ||||| |:||| :|:|| CUCUGCCUCCCAAGUGCUGGGAUUAAAGGUGUGUGCCA-- Trim36 mmu-miR-205 318 335 GUCUGAGGCCA-CCUUACUUCCU :||| |||:||:||| ------AUGGUGGGAGUGGAGGC Trim36 mmu-miR-210 135 153 AGUCGGCGACAGUGUGCGUGUC- |:||||| |||| |||| ---CCUGCUGUGACAC--ACAGG Trim36 mmu-miR-211 628 647 -UCCGUUUCCUACUGUUUCCCUU |||:||| |||||||||| UAGGUAAA--AUGACAAAGGC-- Trim36 mmu-miR-214 1517 1546 -GACGGACAGACACGG-------ACGACA ||||||| || |||| ||||| UCUGCCUGCCUCUGCCUCCCAAGUGCUGG Trim36 mmu-miR-216a 1528 1552 GUGUCAACGGU-------CGACUCUAAU- |||| ||||:||||| -----CUGCCUCCCAAGUGCUGGGAUUAA Trim36 mmu-miR-24* 202 232 UGACUAUAGUCGAG--------UCAUCCGUG- |||: :||| :||:||||| UCUGGAG--GGCUAGGAUUAUAGGUGGGCACC Trim36 mmu-miR-26b 1305 1325 UUGGAUAGGACUUAAUGAACUU- |||| :|||| |||:||||| UACCU--UCUGA-UUAUUUGAAU Trim36 mmu-miR-291a-3p 1165 1193 -CCGUGUGUUUCACC----UUCGUGAAA ||| ||: |||| |||||||| GGGCUCAUUGUGUGGUCAUAAGCACUUG Trim36 mmu-miR-292-5p 433 450 GUUUUCUCGGGGGU-CAAACUCA |:|||: |||||:| ------UGUCCCUUUGUUUGGGG Trim36 mmu-miR-295 1164 1193 -UCUGAGUUUU-CAUCA----UCGUGAAA :|:|||| ||:|| ||||||| UGGGCUCAUUGUGUGGUCAUAAGCACUUG Trim36 mmu-miR-296 147 181 -UGUCCUA-------AC-UCC---CC-CCCGGGA |||||:| || || || |||||: CACAGGGUCUUGCUGUGUAGUCCAGGCGGGCCUC Trim36 mmu-miR-298 1511 1534 CCUUCUUGU--CGGGAGGAGACGG- |||| |||: |||||||| --CAGAAAUCUGCCUGCCUCUGCCU Trim36 mmu-miR-29c 306 325 -UGGCUAAAGUUUACCACGAU ||| ||| ||||||||| UACCUAUUACAAAUGGUGG-- Trim36 mmu-miR-300 847 869 CUUCUCUCGAAC--GGGAACGUAU ||:| |||| ||| |||| -CAGGGUUCUUGAACCCGUGCAA- Trim36 mmu-miR-302 1352 1377 AGUGGUUUUGUACCU---UCGUGAAU |||:||:||||| |||||| ACACUAAGACAUGUUUUCAGCACUG- Trim36 mmu-miR-302b 1353 1377 GAUGAUUUUGUACCU---UCGUGAA |||||:||||| |||||| -CACUAAGACAUGUUUUCAGCACUG Trim36 mmu-miR-302d 1351 1377 -UGUGAGUUUGUACCU---UCGUGAA ||||| |:||||| |||||| GACACUAAGACAUGUUUUCAGCACUG Trim36 mmu-miR-31 137 162 GUCGAUACG----GUCGUAGAACGGA |||:|| ||| :||||||: -UGCUGUGACACACAGGGUCUUGCUG Trim36 mmu-miR-328 203 230 UGCCUUCCCG-UC-------UCUCCCGGUC :|| ||||| || :| |||| CUGG-AGGGCUAGGAUUAUAGGUGGGCA-- Trim36 mmu-miR-335 1153 1176 -UGUAAAAAGCAAUAACGAG-AACU :|||| ||:|| |||| ||| GGCAUUAUUUGUGG--GCUCAUUGU Trim36 mmu-miR-337 423 457 UUUCCGU--AGUAUA----------UCCUCGACUU- ||: ||||:| :||:||||:: --UGGUUAUUCAUGUCCCUUUGUUUGGGGGCUGGGG Trim36 mmu-miR-339 197 217 ACUCGAGGACCUCCUG-UCCCU ||| :|||||||:| ||| -UAGCCUCUGGAGGGCUAGGA- Trim36 mmu-miR-340 137 178 CCGAUAUU-------UCAU--UGAC--------UCUGCCU |||:|:| :|| :||| ||:|||: UGCUGUGACACACAGGGUCUUGCUGUGUAGUCCAGGCGGGC Trim36 mmu-miR-345 204 231 CGUGACCUGAUCC------CCAGUCGU- : ||:||||| ||| :||| -UGGAGGGCUAGGAUUAUAGGUGGGCAC Trim36 mmu-miR-34b 1074 1096 GUUAGUCGA-UUAAUGUGACGGAU |||| | |:|| ||||||| AAAUCUGAGAAGUU-CACUGCCC- Trim36 mmu-miR-34c 1509 1529 CGUUAGUCGAUUGAUGUGACGGA- |||| ||:| |||||| ---CUCAGAAAUCUGC-CUGCCUC Trim36 mmu-miR-365 212 231 UAUUCCUAAAAAUC-CCCGUAAU |||||| :| ||||| --UAGGAUUAUAGGUGGGCAC-- Trim36 mmu-miR-370 208 251 -UUGGUCC-AA--------------GGU-GGGGUCG-UC-CG ::|:||| || ||| ||||||| || |: GGGCUAGGAUUAUAGGUGGGCACCACCAUCCCCAGCUAGUGUA Trim36 mmu-miR-375 11 34 AGUGCGCUCGGCUUG-CUUGUUU- ||||:|| |:|| |:|:||: CCACGUGA-CUGAUGAGGAUAAGA Trim36 mmu-miR-376c 1440 1462 GCACUUUA----AAGGAGAUACAA ||:: ||:||||:||| --CGAGGCAGGGUUUCUCUGUGUA Trim36 mmu-miR-382 848 874 GCUUAGG----UGGUGCUUGUUGAAG- | |:| ||| || :||||||: AGGGUUCUUGAACC-CGUGCAACUUUU Trim36 mmu-miR-383 1295 1318 UCGGUGUC--AGUGGAAGACUAGA |::|| |:||||||||||: -UCUGCAAAAUUACCUUCUGAUUA Trim36 mmu-miR-384 1195 1229 -ACACUUG-------------UUAAAGAUCCUUA ||||||: |||| ||||||| GUGUGAAUCAGUAAAGUACAAAAUUCCUAGGAAA Trim36 mmu-miR-409 848 876 UUCCCCAAGU-----GGCUCGUUGU-AAG- |||||| ||| ||||| ||| --AGGGUUCUUGAACCCGUGCAACUUUUCA Trim36 mmu-miR-410 170 200 -UUGUCCGGU-----AGACA---CAAUAUAA ::|:|||| ||||| |||||| AGGCGGGCCUCAAACUCUGUUCUGUUAUAG- Trim36 mmu-miR-425 221 241 -CCGCCUGUGCUGUAAGGGCUA ||:||:||| || |||| AGGUGGGCACCACCAUCCCC-- Trim36 mmu-miR-433-5p 1149 1178 CUUAUUACUG---------UCCGAGUGGCAU- :|||:| :||||||::||: ---GGAUGGCAUUAUUUGUGGGCUCAUUGUGU Trim36 mmu-miR-434-5p 578 597 CCAAGUUUGGUACUCAGCUCGA :||:||||| ||| || ---CUAAGCCAUGUGUCUUGCA Trim36 mmu-miR-449b 1492 1529 -GGU-CGAUCG---UU-----------ACGUGACGGA- ||| |||:|| :| ||| |||||| ACCAGGCUGGCCUUGAACUCAGAAAUCUGC-CUGCCUC Trim36 mmu-miR-470 144 174 AGUG-GUC-----ACGG----UCAGGUUCUU ||| ||| |||: ||||||:| ACACACAGGGUCUUGCUGUGUAGUCCAGGC- Trim36 mmu-miR-483 313 335 -UGUU--CUGCCCUCCCCUCCUCACU |||| |::||||| ||||| UACAAAUGGUGGGAGUGGAGGC---- Trim36 mmu-miR-485-5p 165 182 CUUAAGUAGUG-CCGGUCGGAGA :|| | ||| :||||| -----AGUC-CAGGCGGGCCUCA Trim36 mmu-miR-495 88 109 UUCUUCAC-GUGGU----ACAAACAAA || ||||| ||||||| -----CUGUCACCACACCUGUUUGUA- Trim36 mmu-miR-542-3p 75 96 AAAGUCAAUAGUU-AGACAGUGU ||| ||| |: |||||||| -AUCAUUUA-CGUCUCUGUCACC Trim36 mmu-miR-546 1554 1568 CUGAGGCACGGUGGUA | :||||||||| --GUGUGUGCCACCAC Trim36 mmu-miR-615 445 463 UUCUCCCUCUGGGUCCGAGCCU- ||:|:|: :||: ||| ----UGGGGGCUGGGGUG-GGAU Trim36 mmu-miR-666 1466 1506 -CCGA---------GAGUG-----------UCGACACGGGCGA |||| ||||| :|||| |||: UGGCUGUCCUGGAACUCACUCUGUAGACCAGGCUG-GCCUU-- Trim36 mmu-miR-667 447 462 GAACCCGACCCACCGUCCACAGU ||||||| ||::|| --GGGGCUGG--GGUGGGA---- Trim36 mmu-miR-671 183 214 GGAGG----------UCGGGGAGGUCCCGAAGGA |||: ||||:|| |||||| ACUCUGUUCUGUUAUAGCCUCUGGAGGGCUA--- Trim36 mmu-miR-673 1483 1509 -GAGGUUCCUGGUCUCGAC----ACUC |||:: |||||| |||| ||| ACUCUGUAGACCAG-GCUGGCCUUGAA Trim36 mmu-miR-674 226 251 AUGUGGUG--AGGGUA-GAGUCACG- :|||||| |||| || ||||: GGCACCACCAUCCCCAGCU-AGUGUA Trim36 mmu-miR-674* 432 455 AACA---AGACUCUACCCUCGACAC ||| |:|| ||||:|||| AUGUCCCUUUGUU-UGGGGGCUGG- Trim36 mmu-miR-675-3p 443 467 UGACUCGCCAAUCCCG---UAUGUC :||:| || |:|||: ||||| UUUGGG-GGCUGGGGUGGGAUACAA Trim36 mmu-miR-682 3 29 GUCUGAA--GUGACACUGACG---UC- :||| ||| ||||||| :| UGGACACCCCAC-GUGACUGAUGAGGA Trim36 mmu-miR-687 153 178 -AGUAACGACGUA--AGGUCCUAUC- || ||||||::| |||||| :| GUC-UUGCUGUGUAGUCCAGGCGGGC Trim36 mmu-miR-688 705 725 -CUUAUUCAUCAGCGGAC-GCU ||||| ||||||| | AGAAUAUUCA-UCGCCUGGCA- Trim36 mmu-miR-689 433 461 CCUGGGG--CGG---CUCG-CCCCUGC- | |||: |:: |:|| |||| | UGUCCCUUUGUUUGGGGGCUGGGGUGGG Trim36 mmu-miR-694 1098 1122 GAAGUCCGUUGUAAAA-----GUC- |||| |||:|||| ||| UUUCA-GCAGCAUUGAAAUACCAGA Trim36 mmu-miR-696 801 822 -GGGUGUCGU-UCGUGUGCG- ||||: |: :|||||:|: GCCCAUUGUCUGGCACAUGUA Trim36 mmu-miR-699 1490 1525 GCUCGGUCC-AGCGU--------------GACGGA- || ||||| | || |||||| AGA-CCAGGCUGGCCUUGAACUCAGAAAUCUGCCUG Trim36 mmu-miR-701 434 456 -AGGUAGAUAAAGUCGCCGAUU- ||| |:|:||| :| ||||:: GUCCCUUUGUUUGGG-GGCUGGG Trim36 mmu-miR-702 444 462 CUCGCCCCAUUUCCCACCCGU :|||| :||||||| --UUGGGGGCUGGGGUGGGA- Trim36 mmu-miR-705 1518 1539 -ACGGGUGG-GGUGGAGGGUGG ||||::|| |::||||||| CUGCCUGCCUCUGCCUCCCAA- Trim36 mmu-miR-706 1433 1458 -AAAAAA-CUCUGUCCCAAAGAGA- |||||| |||:|||||||||||| AUUUUUUCGAGGCAGGGUUUCUCUG Trim36 mmu-miR-709 1516 1537 -AGGAGGACGGAGACGGAGG- ||: ||||||||||||||| AUCUGCCUGCCUCUGCCUCCC Trim36 mmu-miR-742 305 340 AAAUGGG---------UCG----UACCACCGAAAG- ||||: :|: :||| ||||||| -CUACCUAUUACAAAUGGUGGGAGUGGAGGCUUUCU Trim36 mmu-miR-743 575 595 AGAUGAGUCGAACCACAGAAA |||| ||| ||||||| -GUACUAAGCCAUGUGUCUUG Trim36 mmu-miR-744 157 182 -CGACA-AUCGGGA----UCGGGGCGU ||||| |||:|| :|||:| UGCUGUGUAGUCCAGGCGGGCCUCA-- Trim36 mmu-miR-758 1162 1188 AUCACCUGGU-------CCAGUGUUU- ||||:|: |||||:||: -UGUGGGCUCAUUGUGUGGUCAUAAGC Trim36 mmu-miR-761 111 144 -ACAC--AGU--CAAAGU-----GGGACGACG- |||| || ||||:: :|||||||: GUGUGAUUCUUUGUUUUGUCUUGUCCUGCUGUG Trim36 mmu-miR-762 1516 1536 CGAGACAGGGCCGGGGUCGGGG- |||| ||: |||:| |||:| -AUCUG-CCU-GCCUCUGCCUCC Trim36 mmu-miR-764-3p 147 182 -UGUC----AACGG-----------UGAUACCGGAGGA |||| ||||: :| |||||| CACAGGGUCUUGCUGUGUAGUCCAGGCG--GGCCUCA- Trim36 mmu-miR-764-5p 204 233 UCCUCCUGUA---------CACUCGUGG- |||||:| |||:||||| UGGAGGGCUAGGAUUAUAGGUGGGCACCA Trim36 mmu-miR-770-3p 280 310 -GGU-CG----AGGUGCAGUCC--GGGUGC || |: ||||||||| ||:|| ACCUUGUCUCUUCCACGUCAUUGUCCUACC Trim36 mmu-miR-101a 106 113 GA------------AGUCAAUAGUGU----------CAUGACAU || |:|||| |||||||: ACAUAUCAUUUACGUCUC-UGUCACCACACCUGUUUGUACUGUGU Trim36 mmu-miR-101b 106 113 GA------------AGUCGAUAGUGU----------CAUGACAU || ||:|||| |||||||: ACAUAUCAUUUACGUCU-CUGUCACCACACCUGUUUGUACUGUGU Trim36 mmu-miR-135b 44 51 ---GUGUA--------UCCU--------UACU--UUUCGGUAU |||:| |||| :||| ||||||||: CCCCACGUGACUGAUGAGGAUAAGAACCGUGAACAAAGCCAUGC Trim36 mmu-miR-190 71 78 ---------------UGGAUUAUAUAGUU-------UGUAUAGU :||| ||:|:|| |||||||| CGUGAACAAAGCCAUGCCUUG-AUGUUAAUCUAAUUACAUAUCAU Trim36 mmu-miR-199a* 1136 1143 U--------------UGGU---UACA-----CGUCUGAUGACAU |||| |||| |: |||||||| CAGCAGCAUUGAAAUACCAGACAUGUUACAUGUU-ACUACUGUC Trim36 mmu-miR-214 135 142 GACGGACA-GACAC---------------------GGACGACA |||::||| ||||| |||||||| CUGUUUGUACUGUGUGAUUCUUUGUUUUGUCUUGUCCUGCUGUG Trim36 mmu-miR-291a-3p 1185 1192 ----------------CCGUGUGUUUCACC----UUCGUGAAA ||| ||: |||| |||||||| GAUGGCAUUAUUUGUGGGCUCAUUGUGUGGUCAUAAGCACUUG Trim36 mmu-miR-295 1185 1192 ---------------UCUGAGUUUU-CAUCA----UCGUGAAA :|:|||| ||:|| ||||||| GAUGGCAUUAUUUGUGGGCUCAUUGUGUGGUCAUAAGCACUUG Trim36 mmu-miR-298 1525 1532 CCU-------------------UCUUGU--CGGGAGGAGACGG |||| |||: |||||||| AGACCAGGCUGGCCUUGAACUCAGAAAUCUGCCUGCCUCUGCCU Trim36 mmu-miR-302 1185 1192 AG---------------UG-GUUUUGUACC----UUCGUGAAU :| || : ||| ||||||||: GAUGGCAUUAUUUGUGGGCUCAUUGUGUGGUCAUAAGCACUUGU Trim36 mmu-miR-302c 1185 1192 -------------------GGUGACUUUGUACC----UUCGUGAAC :||:|| :||| ||||||||| GAUGGCAUUAUUUGUGGGCUCAUUGU---GUGGUCAUAAGCACUUGU Trim36 mmu-miR-302d 1184 1191 ----------------UGUGAGUU-UGUACC----UUCGUGAA : :|||| : ||| |||||||| GGAUGGCAUUAUUUGUGGGCUCAUUGUGUGGUCAUAAGCACUUG Trim36 mmu-miR-30e 1067 1074 AGGUC------------AGUUCCU-----------ACAAAUGU |||:|| |||||||| GGUACUUAUGUUGUACAUCAGGGUUUUAUGGUUUUUGUUUACAA Trim36 mmu-miR-34a 1088 1095 U------------------UGUUGGUCGAUUCU----GUGACGGU |||| ||:||| ||||||| GGUUUUAUGGUUUUUGUUUACAAAU--CUGAGAAGUUCACUGCCC Trim36 mmu-miR-34c 1088 1095 CG--------------------UUAGUCGAUUGAUGUGACGGA |||| | || | ||||||| GGUUUUAUGGUUUUUGUUUACAAAUCUGAGAAGUUCACUGCCC Trim36 mmu-miR-363 862 869 AA-----------------UGUCUAC----CUAUGGCACGUUA ||||: || |||||||| CAUCGUUUCAUAUAAAAACACAGGGUUCUUGAACCCGUGCAAC Trim36 mmu-miR-384 1221 1228 ----------ACACUUG-------------UUAAAGAUCCUUA ||||||: |||| ||||||| GCACUUGUAGUGUGAAUCAGUAAAGUACAAAAUUCCUAGGAAA Trim36 mmu-miR-449 1088 1095 -------------------UGGUC-GAUUGUUAU-GUGACGGU || ||:| || ||||||| GGUUUUAUGGUUUUUGUUUACAAAUCUGAGAAGUUCACUGCCC Trim36 mmu-miR-449b 1088 1095 GGUC---------------------GA-UCGUUACGUGACGGA || || |:| ||||||| GGUUUUAUGGUUUUUGUUUACAAAUCUGAGAAGUUCACUGCCC Trim36 mmu-miR-455-5p 812 819 ---------------GCUACAU--CAGGUUU----CCGUGUAU :| |||| | ||| |||||||: CUCUAACAGUGUCCUUGUUGUAAUGCCCAUUGUCUGGCACAUGU Trim36 mmu-miR-542-3p 88 95 AA---------------------AGUCAAUAGUU-AGACAGUGU ||| ||| |: |||||||| CUUGAUGUUAAUCUAAUUACAUAUCAUUUA-CGUCUCUGUCACC Trim36 mmu-miR-546 1560 1567 C---------------------------UGAGGCACGGUGGUA : | :||||||||| CCUCUGCCUCCCAAGUGCUGGGAUUAAAGGUGUGUGCCACCAC Trim36 mmu-miR-694 1096 1103 G------------------------AAGUC-CGUUGUAAAAGUC |||| || ||||||||| GGUUUUUGUUUACAAAUCUGAGAAGUUCACUGCC-CAUUUUCAGC Trim36 mmu-miR-699 1088 1095 --------------------------GCUCGGUCCAGCGUGACGGA :||| ||: ||||||| GGUUUUAUGGUUUUUGUUUACAAAUCUGAGAA--GUU-CACUGCCC Trim36 mmu-miR-702 222 229 ---------------------CUCGCCCCAU-UUCCCACCCGU |:|| || | |||||||| UGUUCUGUUAUAGCCUCUGGAGGGCUAGGAUUAUAGGUGGGCAC Trim36 mmu-miR-706 1449 1456 --------------------AAAAAA-CUCUGUCCCAAAGAGA |||||| |||:|||||||||||| AAAGCUGUUUAUUUUAUUUAUUUUUUCGAGGCAGGGUUUCUCUG Trim36 mmu-miR-709 1522 1529 A--------------GGAG------------GACGGAGACGGAGG |||: |||| |||||||: UGUAGACCAGGCUGGCCUUGAACUCAGAAAUCUGC--CUGCCUCUG Trim36 mmu-miR-709 1528 1535 ------------------------AGGAGGACGGAGACGGAGG ||: ||||||||||||||| CCAGGCUGGCCUUGAACUCAGAAAUCUGCCUGCCUCUGCCUCCC Trim36 mmu-miR-743 587 594 AG----------------------AUGAGUCGAACCACAGAAA |||| ||| ||||||| UGAAUGCUUACUGAUAGAAACUAGUACUAAGCCAUGUGUCUUG Trim36 mmu-miR-759 1482 1489 ---------------CAGUUUUAACAA-AC-----GUGAGACG ||| :: ||| || |||||||: GGGUUUCUCUGUGUAGUCCUGGCUGUCCUGGAACUCACUCUGUA Trim36 mmu-miR-761 135 142 AC--------------------ACAGU-CAAAGUGGGACGACG |||: || | :|||||||: CUGUUUGUACUGUGUGAUUCUUUGUUUUGUCUUGUCCUGCUGUG Trim36 mmu-miR-804 1478 1485 --------------------AGGUCC-ACUCCUUGUUGAGUGU ||| || || : ||||||| GGCAGGGUUUCUCUGUGUAGUCCUGGCUGUCCUGGAACUCACU Trim36 mmu-miR-9 1411 1418 --------------------GUAU-GUCGAUC-UAUUGGUUUCU ||| :||: || |||||||||| GAUCAUGUAUGGAAUGUUAACAUUUUAGU-AGAAUAACCAAAGC Trim36 mmu-let-7b 290 312 uuGGUGU-GUUGGAUGAUGGAgu ||||: || : | |||||| ttCCACGTCATTGTCCTACCTat Trim36 mmu-let-7e 1508 1529 UGAUAUGUUGGA-GGAUGGAGu ||| : ||:|| |||:|||| ACTCAGAAATCTGCCTGCCTCt Trim36 mmu-miR-101b 85 113 gaAGUCGAUAGUGU-------CAUGACAu || |: | |||| ||||||| tcTCTGTCACCACACCTGTTTGTACTGTg Trim36 mmu-miR-124a 1544 1565 CCGUAAGU--GGCGCACGGaau || ||| | :|:||||| GGGATTAAAGGTGTGTGCCacc Trim36 mmu-miR-128a 1437 1460 uuuuCUCUGGCC--AAGUGACACu |||:| || ||| ||||| tttcGAGGCAGGGTTTCTCTGTGt Trim36 mmu-miR-128b 1437 1460 cuuuCUCUGGCC--AAGUGACACu |||:| || ||| ||||| tttcGAGGCAGGGTTTCTCTGTGt Trim36 mmu-miR-135b 25 51 gugUAUCCUU---ACU--UUUCGGUAu ||| ||| ||| |||||||| aggATAAGAACCGTGAACAAAGCCATg Trim36 mmu-miR-135b 624 650 gUGUAUCC---UUAC--UUUUCGGUAU | ||||| |||| |||:|||||| tAGATAGGTAAAATGACAAAGGCCATA Trim36 mmu-miR-136 308 333 aGGUAGUAGUUU----UGUUUACCUCa |:||:| |||| : :|:||||| cCTATTA-CAAATGGTGGGAGTGGAGg Trim36 mmu-miR-138 88 104 cuaAGUGUUGUGGUCGA |||| ||||| |:| ctgTCACCACACCTGTT Trim36 mmu-miR-140* 1160 1181 AGGCACCAAGAUGGGACACCAu |::|||| : |:: |||||| TTTGTGGGCTCATTGTGTGGTc Trim36 mmu-miR-144 91 113 gaucaUGUAG-UAGAUAUGACAu ||| | :|:|:|||||| tcaccACACCTGTTTGTACTGTg Trim36 mmu-miR-150 420 451 gUGACC-AU--GUUC-------CCAACCCUCu |:||| || || | | |||||:| aATTGGTTATTCATGTCCCTTTGTTTGGGGGc Trim36 mmu-miR-152 118 139 ggguuCAAGACAGUACGUGACu |||:|||| ||: ||| tctttGTTTTGTCTTGTCCTGc Trim36 mmu-miR-181c 1369 1393 ugaGUGGCU-GUCC--AACUUACAA |||:|| || | | ||||||| cagCACTGATCATGTATGGAATGTT Trim36 mmu-miR-190 52 78 uGGAUUAUA--UAG-UU--UGUAUAGU |:|:||:| ||| || |||||||| cCTTGATGTTAATCTAATTACATATCA Trim36 mmu-miR-196a 1117 1142 GGU-UGU----UGUACUUUGAUGgau ||| ||| ||||| ||||| CCAGACATGTTACATGTTACTACtgt Trim36 mmu-miR-199a* 1115 1143 uUGGU---UAC-ACGU-C--UGAUGACAu |||| ||| | || | |||||||| tACCAGACATGTTACATGTTACTACTGTc Trim36 mmu-miR-199a* 686 706 uuggUUACACGUCUGAUGACau |:||||:| ||||||| ttaaAGTGTGTA-ACTACTGag Trim36 mmu-miR-200a 1106 1128 uGUAGC--AAUGGUCUGUCACAAU |||:| ||||||||| ||||| gCATTGAAATACCAGACA-TGTTA Trim36 mmu-miR-201 145 165 ucuUGUUACGGAAUGACUCAU |||: |:|||:||| ||| cacACAGGGTCTTGCTGTGTA Trim36 mmu-miR-202 1517 1535 AGAAGGGUACGCGAUAUGGAGa ||| || ||| || |:|||| TCTGCC--TGC-CTCTGCCTCc Trim36 mmu-miR-205 312 334 gucugaggCCA-CCUUACUUCCu ||| |||:||:||| ttacaaatGGTGGGAGTGGAGGc Trim36 mmu-miR-210 132 151 agucGGCGACAGUGUGCGUGUC |:||||| || ||||| tgtcCTGCTGT--GACACACAG Trim36 mmu-miR-211 629 648 UCCGUUUCCUACUGUUUCCcuu |||:||| |||||||||| AGGTAAA--ATGACAAAGGcca Trim36 mmu-miR-214 121 142 gAC-GGACAGACAC-GGACGACA || ::||||| || |||||||| tTGTTTTGTCT-TGTCCTGCTGT Trim36 mmu-miR-214 1518 1545 GACGGAC--AGAC--ACGG---ACGACa ||||||| |||| | || ||||| CTGCCTGCCTCTGCCTCCCAAGTGCTGg Trim36 mmu-miR-216a 1526 1550 GUGUC-AACGGU---CGACUCUAAU | | | | ||| ||||:||||| CTCTGCCTCCCAAGTGCTGGGATTA Trim36 mmu-miR-24* 210 230 uGACUAUAGUCGAGUCAUCCGUG || : ||:| | :||:||||| gCTAGGATTA--TAGGTGGGCAC Trim36 mmu-miR-291a-3p 1166 1192 CCGUGUGUUUCACC----UUCGUGAAa ||| ||: : |||| |||||||| GGCTCATTGTGTGGTCATAAGCACTTg Trim36 mmu-miR-292-5p 428 449 guuuucucGGGGGUCAAACUCa |||:: |||||:| attcatgtCCCTTTGTTTGGGg Trim36 mmu-miR-295 1165 1192 uCUGAGU-UUUCAUCA----UCGUGAAa |:|||| : ||:|| ||||||| gGGCTCATTGTGTGGTCATAAGCACTTg Trim36 mmu-miR-296 148 180 UGUCCUA-------AC-UC----CCCCCCGGga |||||:| || || || ||||| ACAGGGTCTTGCTGTGTAGTCCAGGCGGGCCtc Trim36 mmu-miR-298 1509 1532 ccuUCUU--GUCGGGAGGAGACGG |||| | |||: |||||||| ctcAGAAATCTGCCTGCCTCTGCC Trim36 mmu-miR-29c 307 326 UGGCUAAAGUUUACCACgau ||| ||| ||||||||| ACCTATTACAAATGGTGgga Trim36 mmu-miR-300 846 869 cuUCUCUCGAAC--GGGAACGUau ||:| |||| ||| |||| acAGGGTTCTTGAACCCGTGCAac Trim36 mmu-miR-302 1352 1377 aGUGGUUUUGUAC---CUUCGUGAau |||:||:||||| |||||| aCACTAAGACATGTTTTCAGCACTga Trim36 mmu-miR-302 1166 1192 agugGUUUUGUACC----UUCGUGAAu || :::||| |||||||| ggctCATTGTGTGGTCATAAGCACTTg Trim36 mmu-miR-302b 1352 1376 gaUGAUUUUGUAC---CUUCGUGAa |||||:||||| |||||| acACTAAGACATGTTTTCAGCACTg Trim36 mmu-miR-302c 1169 1192 gGUGACUUUGUACC----UUCGUGAAC ||:|| ::||| ||||||||| tCATTG---TGTGGTCATAAGCACTTG Trim36 mmu-miR-302d 1165 1191 uguGAGU-UUGUACC----UUCGUGAA |||| :::||| |||||||| gggCTCATTGTGTGGTCATAAGCACTT Trim36 mmu-miR-302d 1352 1376 UGUGAGUUUGUAC---CUUCGUGAa ||||| |:||||| |||||| ACACTAAGACATGTTTTCAGCACTg Trim36 mmu-miR-30e 1048 1074 agGUC----AGUUCC---UACAAAUGU ||| |:| || |||||||| atCAGGGTTTTATGGTTTTTGTTTACA Trim36 mmu-miR-31 136 161 GUCGAUAC---G-GUCGUAGAACGga | |||:|| | ||| :|||||| CTGCTGTGACACACAGGGTCTTGCtg Trim36 mmu-miR-328 194 214 ugccuucccGUCUCUCCCGGUC | | ||||||:|| ttatagcctCTG-GAGGGCTAG Trim36 mmu-miR-335 1154 1175 uGUAAAAAGCAAUAACGAG-AACu |||| ||:|| : |||| ||| gCATTATTTGTGG--GCTCATTGt Trim36 mmu-miR-337 433 455 uuuccGUAGUAUAUCCUCGACuu | |::| |:||:|||| tgtccCTTTGTTTGGGGGCTGgg Trim36 mmu-miR-339 196 217 acUCGAGGACCUCCUG-UCCcu ||| :|||||||:| ||| atAGCCTCTGGAGGGCTAGGat Trim36 mmu-miR-340 157 176 cCGAUAUUUCAUUGACUCUGCCu |||:|: ||| | ||:||| tGCTGTGTAGT-CC--AGGCGGg Trim36 mmu-miR-345 200 229 cGUGACCU---GAUCC------CCAGUCGU | ||||| ||||| ||| :||| cCTCTGGAGGGCTAGGATTATAGGTGGGCA Trim36 mmu-miR-34a 1071 1095 uUGUUGGUCGAUUCU----GUGACGGu |||| | ||:||| ||||||| tACAA--ATCTGAGAAGTTCACTGCCc Trim36 mmu-miR-34b 1074 1096 gUUAGUCGAUUAAUGUGACGGau |||| | || | ||||||| aAATCTGAGAAGTTCACTGCCca Trim36 mmu-miR-34c 1073 1095 cgUUAGUCGAUUGAUGUGACGGa |||| | || | ||||||| caAATCTGAGAAGTTCACTGCCc Trim36 mmu-miR-34c 1513 1533 CGUUAGUCGAUUGAU-GUGACGGA | |||| || ||: | |||||| GAAATCTGC---CTGCCTCTGCCT Trim36 mmu-miR-351 1441 1460 gUCCGAGUUUCCCGAGGAGUCCCu |||| ||||:|:||| | | gAGGC----AGGGTTTCTCTGTGt Trim36 mmu-miR-363 844 869 aaUGUCU----ACCUAUGGCACGUUa ||||: | || |||||||| acACAGGGTTCTTGAACCCGTGCAAc Trim36 mmu-miR-365 210 232 uauUCCUAAAAAUC-CCCGUaau |||||| | :| ||||| gctAGGATTATAGGTGGGCAcca Trim36 mmu-miR-370 247 272 uugguCCAAGG---UGGGGUCGUCCg |||||: | |:||| ||| tgtatGGTTCTTAAAACTCAGAAGGa Trim36 mmu-miR-370 228 248 uUGGUCCAAGGU-GGGGUCG-UCcg |||| ||| ||||||| || cACCA----CCATCCCCAGCTAGtg Trim36 mmu-miR-375 26 45 agugcgCUCGGCUUGCUUGUUU || ||| :||||||| ggataaGAACCG--TGAACAAA Trim36 mmu-miR-383 1296 1317 ucgGUGUCAGUGGAAGACUAga || | |:|||||||||| ctgCAAAATTACCTTCTGATta Trim36 mmu-miR-409 846 873 uucCCCAAG----U-GGCUCGUUGUAAg |||||| | ||| ||||| || acaGGGTTCTTGAACCCGTGCAACTTTt Trim36 mmu-miR-410 171 200 uuGUCCGG----U-AGAC---ACAAUAUaa |:|||| | |||| ||||||| ggCGGGCCTCAAACTCTGTTCTGTTATAgc Trim36 mmu-miR-425 222 242 CCGCCUGUGCUGUAAGGGCUa ||:||:||| || |||| | GGTGGGCACCACCATCCCCAg Trim36 mmu-miR-433-5p 1155 1176 cUUAUUACUGUCCGAGUGGCAu | || | :::||||||::|| cATTATTTGTGGGCTCATTGTg Trim36 mmu-miR-434-5p 574 596 cCAAG-UUUGGUACUCAGCUCGa || | ||:||||| ||| || aGTACTAAGCCATGTGTCTTGCa Trim36 mmu-miR-449 1073 1095 uggUCGAUUGUU-AUGUGACGGu | ||:| || | ||||||| caaATCTGAGAAGTTCACTGCCc Trim36 mmu-miR-449b 1074 1095 ggUCGA-UCGUUACGUGACGGa | || || |:| ||||||| aaATCTGAGAAGTTCACTGCCc Trim36 mmu-miR-449b 1510 1533 gGUC----GAUCGUUAC-GUGACGGA ||| || || || | |||||| tCAGAAATCT-GC-CTGCCTCTGCCT Trim36 mmu-miR-455-5p 792 819 gCUACAU--CAGGU----UUCCGUGUAu | |||| | ||| ||||||| tGTTGTAATGCCCATTGTCTGGCACATg Trim36 mmu-miR-470 155 174 agugGUCACGGUCAGGUUCuu | ||| :||||||:| cttgCTGTG-TAGTCCAGGcg Trim36 mmu-miR-483 308 330 uguucugcccUCCCCUCCUCACu | || :|||||| cctattacaaATGGTGGGAGTGg Trim36 mmu-miR-485-5p 181 204 cUUAAGUAGUGCCG--GUCGGAGA || || : | |: :||||||| aAACTCTGTTCTGTTATAGCCTCT Trim36 mmu-miR-485-5p 163 181 CUUAAGUAGUGCCGGUCGGAGa | | || || ||| :||||| GTAGTC--CA-GGCGGGCCTCa Trim36 mmu-miR-488 321 351 aACUCUCAC--------GAU--AAUAGACCc ||:||||| ||: ||| |||| gTGGGAGTGGAGGCTTTCTGTCTTAACTGGt Trim36 mmu-miR-495 83 109 uucuucAC-GUGGU----ACAAACAaa || ||||| ||||||| cgtctcTGTCACCACACCTGTTTGTac Trim36 mmu-miR-542-3p 74 95 AAAGUCAAU--AGUUAGACAGUGu | ||| ||| || |||||||| TATCATTTACGTC--TCTGTCACc Trim36 mmu-miR-546 1552 1567 cugAGGCACGGUGGUa | :||||||||| aggTGTGTGCCACCAc Trim36 mmu-miR-615 435 456 uucucccucuggguCCGAGCCu |||| || tccctttgtttgggGGCTGGGg Trim36 mmu-miR-666 1505 1526 ccgaGAGUGUCGACACGGGCGa |||| | | ||||:|| tgaaCTCAGAAATCTGCCTGCc Trim36 mmu-miR-667 438 461 GAACCCGACCCACCG--UCCACagu ||| | :|||| ||| :|||| CTTTGTTTGGG-GGCTGGGGTGgga Trim36 mmu-miR-671 193 216 ggAGGUCGGGGAGGUCCCGAagga | :||||:|| |||||| gtTATAGCCTCTGGAGGGCTagga Trim36 mmu-miR-673 1484 1504 GAGGUUCCUGGUCUCGACacuc |||:: |||||| |||| CTCTGTAGACCAG-GCTGgcct Trim36 mmu-miR-674 229 249 auGUGGUGAGGGUAGAGUCACg |||||: |||| || |||| acCACCATCCCCAGCT-AGTGt Trim36 mmu-miR-674* 440 455 AACAAGACUCUACCCUCGACac ||||| ||||:|||| TTGTT------TGGGGGCTGgg Trim36 mmu-miR-682 5 24 gUCUGAAGUGACACUGACguc | || ||| ||||||| gACACCCCAC-GTGACTGatg Trim36 mmu-miR-687 154 176 AGUAACGACGUA--AGGUCCuauc || ||||||::| |||||| TC-TTGCTGTGTAGTCCAGGcggg Trim36 mmu-miR-688 706 724 CUUAUUCAUCAGCGGACgcu |||| | | ||||||| GAAT-ATTCATCGCCTGgca Trim36 mmu-miR-689 432 452 ccugGGGCGGCUCGCCCCUGc ||| ::| :||||:| atgtCCCTTTGTTTGGGGGCt Trim36 mmu-miR-696 802 820 GGGUGUC-GUUCGUGUGCg ||||: | | :|||||:| CCCATTGTCTGGCACATGt Trim36 mmu-miR-697 200 220 aGAGGUGUCCUGGUCCUAcaa |||:: |||:|:||||| cCTCTGGAGGGCTAGGATtat Trim36 mmu-miR-699 1079 1095 gCUCGGUCCAGCGUGACGGa ||| | ||: ||||||| tGAG--AAGTT-CACTGCCc Trim36 mmu-miR-699 1517 1533 gcuCGGUCCAGCGUGACGGA ||| | | | |||||| tctGCCTG--C-CTCTGCCT Trim36 mmu-miR-701 435 454 AGGUAGAUAAAGUCGCCGAuu ||| |:|:||| :| |||| TCCCTTTGTTT-GGGGGCTgg Trim36 mmu-miR-702 208 229 CUCG-CCCCAUUUCCCACCCGU |:|| || | | |||||||| GGGCTAGGATTATAGGTGGGCA Trim36 mmu-miR-702 442 462 cucgCCCCAUUUCCCACCCgu |||| :||||||| gtttGGGGGCTGGGGTGGGat Trim36 mmu-miR-705 1519 1539 ACGGGUGG-GGUGGAGGGUgg ||||::|| |::||||||| TGCCTGCCTCTGCCTCCCAag Trim36 mmu-miR-706 1435 1456 AAAAAACUCUGUCCCAAAGAGA ||||| |||:|||||||||||| TTTTTCGAGGCAGGGTTTCTCT Trim36 mmu-miR-709 1517 1535 AGGAGGACGGAGACGGAGG ||: ||||||||||||||| TCTGCCTGCCTCTGCCTCC Trim36 mmu-miR-742 317 338 aaauggguCGUACCACCGAAAG | :||| ||||||| aatggtggGAGTGGAGGCTTTC Trim36 mmu-miR-743 574 594 agAUGAGUCGAACCACAGAAa |||| ||| ||||||| agTACTAAGCCATGTGTCTTg Trim36 mmu-miR-744 158 183 CGACA-AUC-GG---GAUCGGGGcgu ||||| ||| || | :|||:| GCTGTGTAGTCCAGGCGGGCCTCaaa Trim36 mmu-miR-758 1161 1186 AUCACCUG-GU------CCAGUGUUu | ||||:| || |||||:|| TTGTGGGCTCATTGTGTGGTCATAAg Trim36 mmu-miR-759 1462 1489 CAGUUUUAACA--AAC----GUGAGACg ||| :: ||| | | ||||||| GTCCTGGCTGTCCTGGAACTCACTCTGt Trim36 mmu-miR-761 122 142 ACACAGUCAAAGUGGGACGACg ||| |: || |:::||||||| TGT-TTTGTCTTGTCCTGCTGt Trim36 mmu-miR-761 140 164 ACACAGUCAAAGUG-----GGACGACG-- |||| || ||| |:|||||: TGTGACA----CACAGGGTCTTGCTGTGT Trim36 mmu-miR-762 1515 1534 cgAGACAGGGCCGGGGUCGGGG |||| || |||:| |||:| aaTCTG--CCTGCCTCTGCCTC Trim36 mmu-miR-764-3p 160 182 uguCAAC-GGUGAUACCGGAGga || | ||| |||||| tgtGTAGTCCAGGCGGGCCTCaa Trim36 mmu-miR-764-5p 213 231 UCCUCCUGUACACUCGUGG |||| |:| |||:||||| AGGATTATAGGTGGGCACC Trim36 mmu-miR-770-3p 286 309 ggucgAGGUGCAGU--CCGGGUGc ||||||||| | ||:|| tctctTCCACGTCATTGTCCTACc Trim36 mmu-miR-804 1463 1485 AGGUCC-ACUCCUUGUUGAGUGu ||| || || : ||||||| TCCTGGCTGTCCTGGAACTCACt Trim36 mmu-miR-9 1396 1418 GU-AUGUCGAUC-UAUUGGUUUCu || | :|| ||| |||||||||| CATTTTAG-TAGAATAACCAAAGc

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim36 RAID00076916 mmu-miR-204-5p miRNA MIMAT0000237 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00090928 mmu-miR-377-3p miRNA MIMAT0000741 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00163860 mmu-miR-8118 miRNA MIMAT0031424 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00188289 mmu-miR-101a-3p miRNA MIMAT0000133 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00189241 mmu-miR-93-5p miRNA MIMAT0000540 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID00247405 mmu-miR-1928 miRNA MIMAT0009391 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00262941 mmu-miR-30c-5p miRNA MIMAT0000514 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00290038 mmu-miR-935 miRNA MIMAT0035718 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00302707 mmu-miR-181d-5p miRNA MIMAT0004324 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID00304190 mmu-miR-504-5p miRNA MIMAT0004889 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00318313 mmu-miR-1195 miRNA MIMAT0005856 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID00340547 mmu-miR-298-5p miRNA MIMAT0000376 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID00379693 mmu-miR-374b-5p miRNA MIMAT0003727 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00381324 mmu-miR-181a-5p miRNA MIMAT0000210 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID00386465 mmu-miR-362-3p miRNA MIMAT0004684 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID00391159 mmu-miR-367-3p miRNA MIMAT0003181 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID00446578 mmu-miR-20a-5p miRNA MIMAT0000529 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00556891 mmu-miR-10a-5p miRNA MIMAT0000648 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00586997 mmu-miR-30b-5p miRNA MIMAT0000130 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00596277 mmu-miR-291a-3p miRNA MIMAT0000368 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID00612273 mmu-miR-141-3p miRNA MIMAT0000153 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID00637647 mmu-miR-34b-5p miRNA MIMAT0000382 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID00650600 mmu-miR-181c-5p miRNA MIMAT0000674 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID00710406 mmu-miR-684 miRNA MIMAT0003462 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00711984 mmu-miR-92a-3p miRNA MIMAT0000539 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID00742340 mmu-miR-16-5p miRNA MIMAT0000527 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID00761879 mmu-miR-221-3p miRNA MIMAT0000669 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00765077 mmu-miR-9-3p miRNA MIMAT0000143 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00777547 mmu-miR-106a-5p miRNA MIMAT0000385 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00805416 mmu-miR-379-5p miRNA MIMAT0000743 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00813890 mmu-miR-15a-5p miRNA MIMAT0000526 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID00825606 mmu-miR-135a-5p miRNA MIMAT0000147 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID00825688 mmu-miR-466i-3p miRNA MIMAT0005834 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00875904 mmu-miR-32-5p miRNA MIMAT0000654 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID00880759 mmu-miR-1946b miRNA MIMAT0009443 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID00894935 mmu-miR-129-5p miRNA MIMAT0000209 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00902271 mmu-miR-30a-5p miRNA MIMAT0000128 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00918697 mmu-miR-7227-3p miRNA MIMAT0028423 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID00939396 mmu-miR-101b-3p miRNA MIMAT0000616 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01022114 mmu-miR-9-5p miRNA MIMAT0000142 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01046391 mmu-miR-137-3p miRNA MIMAT0000149 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID01088789 mmu-miR-759 miRNA MIMAT0003897 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID01122927 mmu-miR-125a-3p miRNA MIMAT0004528 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01130214 mmu-miR-34a-5p miRNA MIMAT0000542 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID01131870 mmu-miR-135b-5p miRNA MIMAT0000612 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID01153020 mmu-miR-7044-5p miRNA MIMAT0027992 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01190408 mmu-miR-195a-5p miRNA MIMAT0000225 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID01197204 mmu-miR-7001-3p miRNA MIMAT0027905 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01237622 mmu-miR-543-3p miRNA MIMAT0003168 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID01243424 mmu-miR-411-3p miRNA MIMAT0001093 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01303362 mmu-miR-34c-5p miRNA MIMAT0000381 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID01329777 mmu-miR-1946a miRNA MIMAT0009412 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID01334763 mmu-miR-875-3p miRNA MIMAT0004938 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01359953 mmu-miR-7670-3p miRNA MIMAT0029847 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01368191 mmu-miR-450b-5p miRNA MIMAT0003511 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01403349 mmu-miR-302a-3p miRNA MIMAT0000380 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID01406334 mmu-miR-320-3p miRNA MIMAT0000666 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01446122 mmu-miR-211-5p miRNA MIMAT0000668 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01466221 mmu-miR-873a-5p miRNA MIMAT0004936 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01471299 mmu-miR-10b-5p miRNA MIMAT0000208 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01596377 mmu-miR-145a-3p miRNA MIMAT0004534 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01612229 mmu-miR-384-3p miRNA MIMAT0001076 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01637386 mmu-miR-322-5p miRNA MIMAT0000548 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID01690580 mmu-miR-325-3p miRNA MIMAT0004640 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01712617 mmu-miR-764-5p miRNA MIMAT0003894 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01717660 mmu-miR-497a-5p miRNA MIMAT0003453 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID01729442 mmu-miR-295-3p miRNA MIMAT0000373 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID01788282 mmu-miR-200a-3p miRNA MIMAT0000519 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID01809715 mmu-miR-546 miRNA MIMAT0003166 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID01815085 mmu-miR-300-3p miRNA MIMAT0000378 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01834412 mmu-miR-1912-3p miRNA MIMAT0014958 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01902832 mmu-miR-7238-3p miRNA MIMAT0028445 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01967278 mmu-miR-7046-3p miRNA MIMAT0027997 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01983900 mmu-miR-335-5p miRNA MIMAT0000766 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID01989767 mmu-miR-361-5p miRNA MIMAT0000704 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02088095 mmu-miR-3095-3p miRNA MIMAT0014912 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02091296 mmu-miR-449c-5p miRNA MIMAT0003460 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID02119847 mmu-miR-6978-5p miRNA MIMAT0027858 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02138782 mmu-miR-15b-5p miRNA MIMAT0000124 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID02158292 mmu-miR-363-3p miRNA MIMAT0000708 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID02164116 mmu-miR-6383 miRNA MIMAT0025129 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02168405 mmu-miR-302b-3p miRNA MIMAT0003374 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID02186134 mmu-miR-466l-3p miRNA MIMAT0005830 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02195507 mmu-miR-30d-5p miRNA MIMAT0000515 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02226493 mmu-miR-6377 miRNA MIMAT0025122 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02249364 mmu-miR-6903-3p miRNA MIMAT0027707 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02345489 mmu-miR-3082-5p miRNA MIMAT0014872 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID02410283 mmu-miR-6912-5p miRNA MIMAT0027724 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02434730 mmu-miR-139-5p miRNA MIMAT0000656 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID02482158 mmu-miR-3089-5p miRNA MIMAT0014899 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID02544854 mmu-miR-30e-5p miRNA MIMAT0000248 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02568939 mmu-miR-503-5p miRNA MIMAT0003188 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID02598988 mmu-miR-20b-5p miRNA MIMAT0003187 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02623940 mmu-miR-302d-3p miRNA MIMAT0003377 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID02667257 mmu-miR-7677-5p miRNA MIMAT0029868 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02710850 mmu-miR-106b-5p miRNA MIMAT0000386 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID02761154 mmu-miR-5135 miRNA MIMAT0020646 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID02773515 mmu-miR-181b-5p miRNA MIMAT0000673 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID02979737 mmu-miR-25-3p miRNA MIMAT0000652 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID02980358 mmu-miR-7042-5p miRNA MIMAT0027988 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03059893 mmu-miR-124-3p miRNA MIMAT0000134 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03071111 mmu-miR-142a-3p miRNA MIMAT0000155 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03092485 mmu-miR-499-3p miRNA MIMAT0017254 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03122839 mmu-miR-1907 miRNA MIMAT0007876 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID03164299 mmu-miR-455-3p miRNA MIMAT0003742 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03174325 mmu-miR-7647-5p miRNA MIMAT0029796 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03288758 mmu-miR-5129-3p miRNA MIMAT0022987 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03300884 mmu-miR-761 miRNA MIMAT0003893 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID03310083 mmu-miR-7028-3p miRNA MIMAT0027961 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03337430 mmu-miR-706 miRNA MIMAT0003496 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID03351155 mmu-miR-142a-5p miRNA MIMAT0000154 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03376521 mmu-miR-1199-5p miRNA MIMAT0005860 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID03391993 mmu-miR-190b-5p miRNA MIMAT0004852 Trim36 mRNA 28105 Prediction 0.2381 Trim36 RAID03399281 mmu-miR-449b miRNA MIMAT0005447 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID03415985 mmu-miR-449a-5p miRNA MIMAT0001542 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID03418601 mmu-miR-216c-5p miRNA MIMAT0029888 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03418983 mmu-miR-202-3p miRNA MIMAT0000235 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03419869 mmu-miR-709 miRNA MIMAT0003499 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID03525021 mmu-miR-340-5p miRNA MIMAT0004651 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03576671 mmu-miR-665-3p miRNA MIMAT0003733 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID03631093 mmu-miR-542-3p miRNA MIMAT0003172 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID03653244 mmu-miR-804 miRNA MIMAT0004210 Trim36 mRNA 28105 CLIP-seq 0.5483 Trim36 RAID03661325 mmu-miR-186-5p miRNA MIMAT0000215 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03789184 mmu-miR-384-5p miRNA MIMAT0004745 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID03842514 mmu-miR-17-5p miRNA MIMAT0000649 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03853558 mmu-miR-294-3p miRNA MIMAT0000372 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID03863315 mmu-miR-494-3p miRNA MIMAT0003182 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03869819 mmu-miR-222-3p miRNA MIMAT0000670 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03898044 mmu-miR-329-3p miRNA MIMAT0000567 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID03958309 mmu-miR-6419 miRNA MIMAT0025175 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID03969542 mmu-miR-383-5p miRNA MIMAT0000748 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID04006218 mmu-miR-7669-3p miRNA MIMAT0029845 Trim36 mRNA 28105 Prediction 0.1828 Trim36 RAID04026533 mmu-miR-92b-3p miRNA MIMAT0004899 Trim36 mRNA 28105 CLIP-seq//Prediction 0.6308 Trim36 RAID04033657 mmu-miR-214-3p miRNA MIMAT0000661 Trim36 mRNA 28105 Prediction 0.2202 Trim36 RAID04057013 mmu-miR-190a-5p miRNA MIMAT0000220 Trim36 mRNA 28105 NGS (Next Generation Sequencing)//Prediction 0.6478