DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000578 mmu-miR-337-3p 279766 Rhbdd3 ucCGUAGUAUAUCCUCGACUu |:| | ||| |||||| uuGUAAGA-AUAAAAGCUGAu 2 20 86 105 [mm9:11:5006066-5006085:+] 0.5324 121 6 -8.56 -0.1021 MIMAT0004670 mmu-miR-7a* 279766 Rhbdd3 auaccgucugacACUAAACAAc ||||||||| aagaauaaaagcUGAUUUGUUu 2 11 90 111 [mm9:11:5006070-5006091:+] 0.5324 150 7 -8.36 -0.5464 MIMAT0014815 mmu-miR-3099* 279766 Rhbdd3 guucccgaccuuccUUCGACc |||||| cuuuguaagaauaaAAGCUGa 2 8 84 104 [mm9:11:5006064-5006084:+] 0.5324 120 6 -8.26 -0.4699 MIMAT0004189 mmu-miR-693-3p 279766 Rhbdd3 aaugucgguguagACUUUCGACg | ||||||| uacuuuguaagaaUAAAAGCUGa 2 11 82 104 [mm9:11:5006062-5006084:+] 0.5324 142 7 -11.20 -1.3208 MIMAT0009431 mmu-miR-1958 279766 Rhbdd3 ugaaugacgaagguGAAAGGAu ||||||| ------------ucCUUUCCUu 2 9 1 10 [mm9:11:5005981-5005990:+] 0.4199 140 7 -9.87 -0.1716 MIMAT0003182 mmu-miR-494 279766 Rhbdd3 cuccaaaGGGCACAUACAAAGu ||| ||||||| gacuaggCCCCAACAUGUUUCc 2 16 56 77 [mm9:11:5006036-5006057:+] 0.4768 143 7 -13.22 -0.1709

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G041086 Rhbdd3 Mus musculus 279766

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rhbdd3 mmu-miR-682 beg:27 end:44 pic:3' GTCTGAAGTGACACTGACGTC 5'& |.| || |||||||| &5' CGGTCT------TGACTGCA- 3' Rhbdd3 mcmv-miR-m21-1 beg:64 end:81 pic:3' GCCGAACTTGCAC-AGGGGATA 5'& ||| || |.||||. &5' -------AACATGTTTCCCTG- 3' Rhbdd3 mmu-miR-106a beg:68 end:89 pic:3' GATGGACGTGACAATCGTGAAAC 5'& ||. |.|.|||||| &5' -----TGTTTCCCTGGTACTTTG 3' Rhbdd3 mmu-miR-129-3p beg:11 end:26 pic:3' TACGAAAAACCCCATTCCCGAA 5'& |||| .||||||| &5' -TGCT---------GAGGGCTT 3' Rhbdd3 mmu-miR-17 beg:68 end:89 pic:3' GATGGACGTGACATTCGTGAAAC 5'& ||. .|.|||||| &5' -----TGTTTCCCTGGTACTTTG 3' Rhbdd3 mmu-miR-1959 beg:30 end:49 pic:3' GAGGTGACTCGATGTAGGGG 5'& ||. ||| ||.||||||. &5' -TCT--TGA-CTGCATCCCT 3' Rhbdd3 mmu-miR-20b beg:65 end:89 pic:3' GATGGACGTGATACTCGTGAAAC 5'& || ||. .|.|||||| &5' --ACATGTTTCCCTGGTACTTTG 3' Rhbdd3 mmu-miR-214 beg:0 end:19 pic:3' TGACGGACAGACACGGACGACA 5'& ||| || ||.|||||| &5' ----CCTTTCCTTGTCTGCTG- 3' Rhbdd3 mmu-miR-465a-3p beg:73 end:83 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||||.| &5' --------------CCCTGGT- 3' Rhbdd3 mmu-miR-465b-3p beg:73 end:83 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||||.| &5' --------------CCCTGGT- 3' Rhbdd3 mmu-miR-465c-3p beg:73 end:83 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||||.| &5' --------------CCCTGGT- 3' Rhbdd3 mmu-miR-509-5p beg:32 end:55 pic:3' TACTAAC-GGTGTAA-GACCTCAT 5'& ||| | ||| ||||.||| &5' ----TTGACTGCATCCCTGGGGTA 3' Rhbdd3 mmu-miR-666-5p beg:0 end:18 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& ||.|| || ||.|.||| &5' --CTTTC----CT-TGTCTGCT 3' Rhbdd3 mmu-miR-704 beg:55 end:76 pic:3' GATCCTCGTCTCGTGTACAGA 5'& ||||| ||||||.| &5' CTAGGCCCCA---ACATGTTT 3' Rhbdd3 mmu-miR-710 beg:9 end:28 pic:3' GAGTTGAGAGGGGTTCTGAACC 5'& ||| |. |.|.||||| &5' ------TCTGCTGAGGGCTTGG 3' Rhbdd3 mmu-miR-743b-3p beg:96 end:113 pic:3' AGATAAGTCGTACT--ACAGAAAG 5'& ||| ||| |||.|||| &5' -------AGC-TGATTTGTTTTTC 3' Rhbdd3 mmu-miR-758 beg:48 end:69 pic:3' ATCA-CCTGGTCCAGTGTTT 5'& .|| ||||.||| | ||| &5' -GGTAGGACTAGGCCCCAA- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rhbdd3 RAID01722486 mmu-miR-494-3p miRNA MIMAT0003182 Rhbdd3 mRNA 279766 Prediction 0.1828 Rhbdd3 RAID01961026 mmu-miR-665-5p miRNA MIMAT0017238 Rhbdd3 mRNA 279766 Prediction 0.1828 Rhbdd3 RAID02003674 mmu-miR-6959-5p miRNA MIMAT0027818 Rhbdd3 mRNA 279766 Prediction 0.1828 Rhbdd3 RAID02503283 mmu-miR-7226-5p miRNA MIMAT0028420 Rhbdd3 mRNA 279766 Prediction 0.1828