DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004573 mmu-miR-293* 24108 Ubd guUUUACAGUGUGU-CAAACUCa :|||| |:| | |||||| gaGAAUGAAAUAAAUAUUUGAGg 2 21 87 109 [mm9:17:37332745-37332767:+] 0.5221 127 6 -11.96 -0.1526 MIMAT0004574 mmu-miR-294* 24108 Ubd ucuaucccggagguaAAACUCa |||||| agaaugaaauaaauaUUUGAGg 2 8 88 109 [mm9:17:37332746-37332767:+] 0.5221 120 6 -5.66 -0.1556 MIMAT0004575 mmu-miR-295* 24108 Ubd cuucacacggggUGUAAACUCa |:||||||| agaaugaaauaaAUAUUUGAGg 2 11 88 109 [mm9:17:37332746-37332767:+] 0.5221 146 7 -12.32 -1.1235 MIMAT0004704 mmu-miR-335-3p 24108 Ubd ccaguccUCGUUAUUACUUUuu | |:| ||||||| aaaaauuAACGAGAAUGAAAua 3 16 77 98 [mm9:17:37332735-37332756:+] 0.5227 135 0 -7.41 -0.1815 MIMAT0003481 mmu-miR-695 24108 Ubd aagucAGUGGAUACGGGUUAGa | | |||| |||||| uccucUGAGCUAUUACCAAUCa 2 18 38 59 [mm9:17:37332696-37332717:+] 0.5075 129 6 -11.53 -0.1086 MIMAT0003488 mmu-miR-698 24108 Ubd ucccUUCCUUUGCUCUUAc || ||||||||| uaaaAAAUUAACGAGAAUg 2 16 75 93 [mm9:17:37332733-37332751:+] 0.5227 151 7 -15.35 -1.1511 MIMAT0004844 mmu-miR-880 24108 Ubd agAUGAGUCUCUC-CUACCUCAu ||:|: |||:| :|||||| aaUAUUU-GAGGGAAGUGGAGUa 2 21 99 120 [mm9:17:37332757-37332778:+] 0.5221 141 6 -21.03 -0.2263 MIMAT0004890 mmu-miR-509-5p 24108 Ubd uacuaacgguguaagACCUCAu |||||| aauauuugagggaagUGGAGUa 2 8 99 120 [mm9:17:37332757-37332778:+] 0.5221 120 6 -11.28 -0.2325 MIMAT0005857 mmu-miR-1196 24108 Ubd uccgUCUCCGUC-CAUCUAAa :|| |::| ||||||| ugagGGAAGUGGAGUAGAUUa 2 17 105 125 [mm9:17:37332763-37332783:+] 0.4958 151 7 -15.68 -1.2338 MIMAT0015643 mmu-miR-3472 24108 Ubd ccaaggaaggucGAAGAC-CGAUAAu | |||| |||||| caaagccgauuuCCUCUGAGCUAUUa 2 14 27 52 [mm9:17:37332685-37332710:+] 0.5075 121 6 -17.55 -0.5633 MIMAT0000366 mmu-miR-290-5p 24108 Ubd uuucacggggguaucAAACUCa |||||| agaaugaaauaaauaUUUGAGg 2 8 88 109 [mm9:17:37332746-37332767:+] 0.5221 120 6 -7.68 -0.1586 MIMAT0000369 mmu-miR-292-5p 24108 Ubd guuuucucgggggucAAACUCa |||||| agaaugaaauaaauaUUUGAGg 2 8 88 109 [mm9:17:37332746-37332767:+] 0.5221 120 6 -6.00 -0.1556 MIMAT0000555 mmu-miR-324-5p 24108 Ubd ugugguuacgGGAUCCCCUACGc || |||||||| ----------CCACGGGGAUGCg 2 14 1 13 [mm9:17:37332659-37332671:+] 0.6037 149 7 -21.79 -0.7537 MIMAT0000766 mmu-miR-335-5p 24108 Ubd uguaaaaagcaauaacGAGAACu |||||| cuauuaccaaucacauCUCUUGa 2 8 47 69 [mm9:17:37332705-37332727:+] 0.5075 120 6 -10.53 -0.1274 MIMAT0004896 mmu-miR-590-3p 24108 Ubd ugAUCGAAUAUGUAUUUUAAu | | | |||:| |||||| ucUUGAUGAUAUAAAAAAUUa 2 20 64 84 [mm9:17:37332722-37332742:+] 0.5227 135 6 -8.49 -0.1928

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G043928 Ubd Mus musculus 24108

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Ubd mmu-miR-698 beg:81 end:94 pic:3' TCCCTTCCTTTGCTCTTAC 5'& |||||||||| &5' ---------AACGAGAATG 3' Ubd mmu-miR-324-5p beg:0 end:13 pic:3' TGTGGTTACGGGATCCCCTACGC 5'& || ||||||||| &5' ----------CCACGGGGATGCG 3' Ubd mmu-miR-1196 beg:106 end:125 pic:3' TCCGTCTCCGTCCATCTAAA 5'& .|| || || ||||||| &5' GGGAAGTGGA--GTAGATT- 3' Ubd mmu-miR-1959 beg:35 end:67 pic:3' GAGGTGACTCGA----------TGTAGGGG 5'& ||| ||||||| |||||.|. &5' -TCCTCTGAGCTATTACCAATCACATCTCT 3' Ubd mmu-miR-3472 beg:33 end:53 pic:3' CCAAGGAAGGTCGAAGAC-CGATAAT 5'& .|||| |||| ||||||| &5' -----TTTCC----TCTGAGCTATTA 3' Ubd mmu-miR-741 beg:57 end:68 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& |||||||. &5' --------------CATCTCTT- 3' Ubd mmu-miR-743b-5p beg:31 end:48 pic:3' ACTACCTGT-GGTCAGACTTGT 5'& ||. || |||||.| &5' -----GATTTCC--TCTGAGC- 3' Ubd mmu-miR-877 beg:28 end:45 pic:3' GGGACGCGG-TAGAGGAGATG 5'& ||| ||.||||||. &5' ------GCCGATTTCCTCTG- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubd RAID00174396 mmu-miR-145a-5p miRNA MIMAT0000157 Ubd mRNA 24108 Prediction 0.1828 Ubd RAID00503258 mmu-miR-145b miRNA MIMAT0025105 Ubd mRNA 24108 Prediction 0.1828 Ubd RAID00733657 mmu-miR-335-5p miRNA MIMAT0000766 Ubd mRNA 24108 Prediction 0.1828 Ubd RAID00942882 mmu-miR-7646-5p miRNA MIMAT0029794 Ubd mRNA 24108 Prediction 0.1828 Ubd RAID00970352 mmu-miR-590-3p miRNA MIMAT0004896 Ubd mRNA 24108 Prediction 0.1828 Ubd RAID01090094 mmu-miR-468-3p miRNA MIMAT0002109 Ubd mRNA 24108 Prediction 0.1828 Ubd RAID01413777 mmu-miR-5112 miRNA MIMAT0020620 Ubd mRNA 24108 Prediction 0.1828 Ubd RAID02085375 mmu-miR-292a-5p miRNA MIMAT0000369 Ubd mRNA 24108 Prediction 0.1828 Ubd RAID02622293 mmu-miR-290a-5p miRNA MIMAT0000366 Ubd mRNA 24108 Prediction 0.1828 Ubd RAID02683295 mmu-miR-324-5p miRNA MIMAT0000555 Ubd mRNA 24108 Prediction 0.1828 Ubd RAID02690679 mmu-miR-5113 miRNA MIMAT0020621 Ubd mRNA 24108 Prediction 0.1828 Ubd RAID02850022 mmu-miR-7655-3p miRNA MIMAT0029817 Ubd mRNA 24108 Prediction 0.1828