DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000161 mmu-miR-151-3p 66597 Trim13 ggAGUUCCUCGGAGUCAGAUc |||| || ::|||||||: gaUCAA-GA-UUUCAGUCUGu 2 20 68 86 [mm9:14:62224664-62224682:+] 0.5545 143 0 -18.23 -0.1597 MIMAT0004539 mmu-miR-183* 66597 Trim13 aauaccgggaagccAUUAAGUg ||||||| ggagaacacaggaaUAAUUCAg 2 9 42 63 [mm9:14:62224638-62224659:+] 0.5388 140 7 -7.63 -0.7329 MIMAT0004578 mmu-miR-300* 66597 Trim13 uguuuccUAUUGGAGAGAAGUu | |:: |:|||||| ucuuuuuAAAGUAUUUCUUCAa 2 16 88 109 [mm9:14:62224684-62224705:+] 0.5357 135 6 -11.02 -0.2388 MIMAT0004625 mmu-miR-16* 66597 Trim13 agUCGUCGUGUCAGUUAUGACc ||: :| | | ||||||| acAGUUUUAAAAUAAAUACUGu 2 21 157 178 [mm9:14:62224753-62224774:+] 0.5167 152 7 -12.96 -1.1951 MIMAT0004790 mmu-miR-503* 66597 Trim13 ggUCCGUC--ACCUUU-GUUAUGAg || ||| | ||| |||||| aaAGACAGUUUUAAAAUAAAUACUg 2 21 153 177 [mm9:14:62224749-62224773:+] 0.5167 122 6 -9.84 -0.1867 MIMAT0003373 mmu-miR-302b* 66597 Trim13 ucuuUCGUA-AGGGUACAAUUUCa ||: | |::| | |||||| uuucAGUCUGUUUCUUUUUAAAGu 2 20 76 99 [mm9:14:62224672-62224695:+] 0.5545 126 6 -8.53 -0.1776 MIMAT0003375 mmu-miR-302c* 66597 Trim13 cguccauuGGGGUACAAUUUCg ::|| | |||||| accuucccUUCCUUCUUAAAGa 2 15 136 157 [mm9:14:62224732-62224753:+] 0.5167 122 6 -8.86 -0.1146 MIMAT0003375 mmu-miR-302c* 66597 Trim13 cguccauugggguacAAUUUCg |||||| ucagucuguuucuuuUUAAAGu 2 8 78 99 [mm9:14:62224674-62224695:+] 0.5545 120 6 -10.46 -0.1827 MIMAT0003496 mmu-miR-706 66597 Trim13 aaaaaacUCUGUCCCAAAGAGa | |:| ||||||| uuaaaauAAAUACUGUUUCUCu 2 16 163 184 [mm9:14:62224759-62224780:+] 0.5169 147 7 -11.16 -1.1262 MIMAT0003496 mmu-miR-706 66597 Trim13 aaaAAACUCUGUCCCAAAGAGa ||| || | ||||||: agaUUUCAGUC--UGUUUCUUu 2 20 73 92 [mm9:14:62224669-62224688:+] 0.5545 132 0 -10.75 -0.1391 MIMAT0004846 mmu-miR-881 66597 Trim13 agauaagucuUUUCUGUGUCAa || ||||||| --agucuuucAAUUACACAGUu 2 13 1 20 [mm9:14:62224597-62224616:+] 0.5308 144 7 -13.16 -0.5549 MIMAT0000156 mmu-miR-144 66597 Trim13 ucAUGUAGUAGAUAUGACAu | :| || ||||||| guUUUAAAAUAAAUACUGUu 2 19 160 179 [mm9:14:62224756-62224775:+] 0.5167 146 7 -7.93 -1.1033 MIMAT0000215 mmu-miR-186 66597 Trim13 ucggguuuuccucuuAAGAAAc |||||| aagauuucagucuguUUCUUUu 2 8 72 93 [mm9:14:62224668-62224689:+] 0.5545 120 6 -5.33 -0.1249 MIMAT0000233 mmu-miR-200b 66597 Trim13 aguaguaaugguccgUCAUAAu |||||| ucuguuucuuuuuaaAGUAUUu 2 8 82 103 [mm9:14:62224678-62224699:+] 0.5357 120 6 -4.38 -0.1287 MIMAT0000657 mmu-miR-200c 66597 Trim13 agguaguaaugggccgUCAUAAu |||||| gucuguuucuuuuuaaAGUAUUu 2 8 81 103 [mm9:14:62224677-62224699:+] 0.5357 120 6 -7.58 -0.1287 MIMAT0000704 mmu-miR-361 66597 Trim13 cauggggaccUCUAAGACUAuu ||| |||||| ggaauaauucAGA-UCUGAUca 3 13 52 72 [mm9:14:62224648-62224668:+] 0.5733 126 0 -8.48 -0.1105 MIMAT0000748 mmu-miR-383 66597 Trim13 ucggUGUCAGUGGAAGACUAGa |:| |: ||||||| aggaAUAAUUCAGAUCUGAUCa 2 19 51 72 [mm9:14:62224647-62224668:+] 0.5733 142 7 -10.51 -1.1854 MIMAT0001537 mmu-miR-429 66597 Trim13 ugccguaauggucugUCAUAAu |||||| ucuguuucuuuuuaaAGUAUUu 2 8 82 103 [mm9:14:62224678-62224699:+] 0.5357 120 6 -5.95 -0.1287 MIMAT0003169 mmu-miR-539 66597 Trim13 ugUGUGGUUCCUAUUAAAGAGg | | :|| | :|||||| uuAAAAUAAAUACUGUUUCUCu 2 21 163 184 [mm9:14:62224759-62224780:+] 0.5169 132 6 -8.43 -0.1170 MIMAT0003169 mmu-miR-539 66597 Trim13 uguguGGUUCCUAUUAAAGAGg ::|| | | ||||||: ucuuuUUAAAG-U-AUUUCUUc 2 18 88 107 [mm9:14:62224684-62224703:+] 0.5357 125 0 -8.38 -0.1530 MIMAT0003182 mmu-miR-494 66597 Trim13 cuccaaagggcacauACAAAGu |||||| aucaagauuucagucUGUUUCu 2 8 69 90 [mm9:14:62224665-62224686:+] 0.5545 120 6 -9.41 -0.1356 MIMAT0003738 mmu-miR-496 66597 Trim13 cucuaaccgguacaUUAUGAgu |||||| acaguuuuaaaauaAAUACUgu 3 9 157 178 [mm9:14:62224753-62224774:+] 0.5167 120 0 -5.25 -0.1098 MIMAT0004896 mmu-miR-590-3p 66597 Trim13 ugaucgaauauguAUUUUAau |||||| uuaaagacaguuuUAAAAUaa 3 9 151 171 [mm9:14:62224747-62224767:+] 0.5167 120 0 -4.17 -0.1553

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G061652 Trim13 Mus musculus 66597

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Trim13 mghv-miR-M1-6 beg:143 end:166 pic:3' TTTTGGTGGAGTG--TGTCAAAGT 5'& || .||.| |||||||.| &5' ----CCTTCTTAAAGACAGTTTTA 3' Trim13 mmu-let-7g beg:9 end:28 pic:3' TTGACATGTTTGATGATGGAGT 5'& |||| | | ||.|.|| &5' -----TACACAGTTCTGCTTC- 3' Trim13 mmu-miR-151-3p beg:67 end:86 pic:3' GGAGTTCCTCGGAGTCAGATC 5'& ||||| ..|||||||. &5' --TCAAGA--TTTCAGTCTG- 3' Trim13 mmu-miR-1943 beg:126 end:146 pic:3' AGGTCCACGGGTCTA-GGAGGGAA 5'& |.|| |.|||||| &5' -------GTCCTAAACCTTCCCTT 3' Trim13 mmu-miR-1943 beg:134 end:153 pic:3' AGGTCCACGGGTCTAGGAGGGAA 5'& || ||| ||||.|.| &5' -CCTT---CCCT--TCCTTCTT- 3' Trim13 mmu-miR-216a beg:11 end:40 pic:3' AGTGTCA--ACGGTCG---ACTCTAAT 5'& |||||| |||. ||.||||. &5' -CACAGTTCTGCTTCTTGATGGGATTG 3' Trim13 mmu-miR-327 beg:100 end:123 pic:3' TAGGAG-TACGG-GGAGTTCA 5'& ||.|| |||.| ..| |||| &5' -TCTTCAATGTCATTTGAAGT 3' Trim13 mmu-miR-421 beg:25 end:44 pic:3' CGCGGGTTAATTACA--GACAACTA 5'& ||.||| .|||||. &5' --------TTGATGGGATTGTTGG- 3' Trim13 mmu-miR-488 beg:0 end:11 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& ||.||||||| &5' -----------AGTCTTTCAA 3' Trim13 mmu-miR-684 beg:29 end:49 pic:3' AACTGAACTTC---CCTTTTGA 5'& ||. || |||.||| &5' --GATGGGATTGTTGGAGAAC- 3' Trim13 mmu-miR-881 beg:0 end:21 pic:3' AGATAAGTCTTTTCTGTGTCAA 5'& ||| |||| |||||||| &5' TCT-TTCAATT---ACACAGTT 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim13 RAID00081078 mmu-miR-361-5p miRNA MIMAT0000704 Trim13 mRNA 66597 Prediction 0.1828 Trim13 RAID00422071 mmu-miR-144-3p miRNA MIMAT0000156 Trim13 mRNA 66597 Prediction 0.1828 Trim13 RAID00515914 mmu-miR-200c-3p miRNA MIMAT0000657 Trim13 mRNA 66597 Prediction 0.1828 Trim13 RAID00636763 mmu-miR-496a-3p miRNA MIMAT0003738 Trim13 mRNA 66597 Prediction 0.1828 Trim13 RAID00950026 mmu-miR-539-5p miRNA MIMAT0003169 Trim13 mRNA 66597 Prediction 0.1828 Trim13 RAID01676259 mmu-miR-3094-3p miRNA MIMAT0014910 Trim13 mRNA 66597 Prediction 0.1828 Trim13 RAID01756528 mmu-miR-186-5p miRNA MIMAT0000215 Trim13 mRNA 66597 Prediction 0.1828 Trim13 RAID01935141 mmu-miR-494-3p miRNA MIMAT0003182 Trim13 mRNA 66597 Prediction 0.1828 Trim13 RAID02003535 mmu-miR-383-5p miRNA MIMAT0000748 Trim13 mRNA 66597 Prediction 0.1828 Trim13 RAID02437158 mmu-miR-590-3p miRNA MIMAT0004896 Trim13 mRNA 66597 Prediction 0.1828 Trim13 RAID03235362 mmu-miR-200b-3p miRNA MIMAT0000233 Trim13 mRNA 66597 Prediction 0.1828 Trim13 RAID03673437 mmu-miR-429-3p miRNA MIMAT0001537 Trim13 mRNA 66597 Prediction 0.1828