DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Midn ATTTA 457-1983 2796-2800;3423-3427 Coordinated posttranscriptional mRNA population dynamics during#Mol Syst Biol 2009; 5: 288.!

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT598256 mmu-miR-204-5p Mus musculus Midn 59090 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598252 mmu-miR-342-3p Mus musculus Midn 59090 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598254 mmu-miR-211-5p Mus musculus Midn 59090 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598250 mmu-miR-500-3p Mus musculus Midn 59090 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598249 mmu-miR-501-3p Mus musculus Midn 59090 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598253 mmu-miR-343 Mus musculus Midn 59090 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598255 mmu-miR-1897-5p Mus musculus Midn 59090 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT598251 mmu-miR-3093-5p Mus musculus Midn 59090 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 59090 Midn cgacGUUUGUAGG---CUGACUUUc |||:: ||| ||||||| cgccCAAGUCUCCUUUUACUGAAAu 2 19 1634 1658 [mm9:10:79621021-79621045:+] 0.5274 149 7 -12.05 -0.7337 MIMAT0003473 mmu-miR-133a* 59090 Midn uaaaCCAAGGUAAAAUGGUCg | | ||| ||||||| cuccGAUGCCA-CUUACCAGc 2 18 107 126 [mm9:10:79619494-79619513:+] 0.5217 147 7 -15.98 -0.1017 MIMAT0004531 mmu-miR-135a* 59090 Midn gcGGUGCCGAGGUUAGGGAUAu |||: |:||: ||||||| acCCAUAGUUCUCUUCCCUAUg 2 21 1540 1561 [mm9:10:79620927-79620948:+] 0.5381 164 7 -24.13 -0.1768 MIMAT0000249 mmu-miR-30e* 59090 Midn cgacauuuGUAGGCUGACUUUc | |:: ||||||| ccaagucuCCUUUUACUGAAAu 2 15 1637 1658 [mm9:10:79621024-79621045:+] 0.5274 146 7 -8.77 -0.7337 MIMAT0004574 mmu-miR-294* 59090 Midn ucuaucccGGAG--GUAAAACUCa |||| ||||||||| guuuuuuuCCUCCACAUUUUGAGa 2 15 1090 1113 [mm9:10:79620477-79620500:+] 0.5311 157 7 -18.05 -0.6098 MIMAT0004575 mmu-miR-295* 59090 Midn cuucacacggggUGUAAACUCa | ||||||| uuuacugaaauaAAAUUUGAGg 2 11 1648 1669 [mm9:10:79621035-79621056:+] 0.5168 142 7 -8.37 -0.2158 MIMAT0004575 mmu-miR-295* 59090 Midn cuucACACGGGGUGU-AAACUCa | | |:||||| |||||| uuuuUUUCCUCCACAUUUUGAGa 2 19 1091 1113 [mm9:10:79620478-79620500:+] 0.5311 134 6 -18.24 -0.5929 MIMAT0000374 mmu-miR-296-5p 59090 Midn ugucCUAAC-UC--CCCCCCGGGa |:||| || ||||||||| gguaGGUUGUAGGAGGGGGGCCCa 2 18 883 906 [mm9:10:79620270-79620293:+] 0.4998 159 7 -30.78 -0.1914 MIMAT0000376 mmu-miR-298 59090 Midn cccuucuUGUCGGGAGGA-GACGg ||||||:|||| |||| uuaacucACAGCCUUCCUCCUGCc 2 17 546 569 [mm9:10:79619933-79619956:+] 0.4941 140 0 -30.65 -0.1300 MIMAT0004616 mmu-miR-30c-1* 59090 Midn ccucauuuguugggAGAGGGUc ||||||| uccuccugccucagUCUCCCAa 2 9 560 581 [mm9:10:79619947-79619968:+] 0.4941 140 7 -13.56 -0.2835 MIMAT0005438 mmu-miR-30c-2* 59090 Midn ucucauuuGUCGGA---AGAGGGUc | |||| ||||||| ccuuccucCUGCCUCAGUCUCCCAa 2 15 557 581 [mm9:10:79619944-79619968:+] 0.4941 145 7 -16.81 -0.2835 MIMAT0004635 mmu-miR-92a* 59090 Midn cauuACGG-UGGUUAGGGGUGGa |||| | | |||||||| gcucUGCCUAGCUCUCCCCACCc 2 19 314 336 [mm9:10:79619701-79619723:+] 0.5217 157 7 -23.73 -0.1987 MIMAT0004643 mmu-miR-331-5p 59090 Midn ccuagggacccuggUAUGGAUc ||||||| uaaagcugucuugaAUACCUAu 2 9 1420 1441 [mm9:10:79620807-79620828:+] 0.5381 140 7 -11.48 -0.7048 MIMAT0000605 mmu-miR-350 59090 Midn cuuucacAUAC-CCGAAACACUu | || | :||||||| uccacauUUUGAGAUUUUGUGAu 2 16 1100 1122 [mm9:10:79620487-79620509:+] 0.5311 146 7 -9.00 -0.7466 MIMAT0004659 mmu-miR-10a* 59090 Midn auAAGGGGAUCUAUGCUUAAAc || | | || ||||||| acUUACACGAGCACCGAAUUUc 2 21 1682 1703 [mm9:10:79621069-79621090:+] 0.5168 152 7 -7.38 -0.3558 MIMAT0004665 mmu-miR-218-1* 59090 Midn ccacGAACUG--CCUUGGUACAAa | |||| : ||||||| caccCCUGACAUCUGUCCAUGUUg 2 19 1139 1162 [mm9:10:79620526-79620549:+] 0.5311 141 7 -11.90 -0.1739 MIMAT0003120 mmu-miR-483* 59090 Midn uuCUGCCCUCCCCUCCUCACu | :| | | ||||||| ggGCUGAUAUAGCAGGAGUGa 2 20 1056 1076 [mm9:10:79620443-79620463:+] 0.5311 143 7 -15.44 -0.4649 MIMAT0003171 mmu-miR-542-5p 59090 Midn agcacuguacuaCUAGGGGCUc | ||||||| gauucuuuuuuaGCUCCCCGAu 2 11 133 154 [mm9:10:79619520-79619541:+] 0.5217 142 7 -13.27 -0.2830 MIMAT0003376 mmu-miR-302c 59090 Midn ggugACUUUGUACCUUCGUGAa | :| : | ||||||| aaugUAGAUUCUCCAAGCACUu 2 19 368 389 [mm9:10:79619755-79619776:+] 0.5217 142 7 -12.05 -0.4062 MIMAT0003739 mmu-miR-673-5p 59090 Midn gagguuccuGGUCUCGACACUc |:|| ||||||| uccuuuguuCUAG-GCUGUGAa 2 14 1186 1206 [mm9:10:79620573-79620593:+] 0.4827 147 7 -19.16 -0.1516 MIMAT0003451 mmu-miR-677 59090 Midn agucuucgauuAGUAGUGACUu |: ||||||| agauuucauuuUUCUCACUGAg 2 12 819 840 [mm9:10:79620206-79620227:+] 0.5273 143 7 -13.21 -0.2174 MIMAT0003464 mmu-miR-686 59090 Midn agaaguggcagaccCUUCGUUa ||||||| ggauggaaaaagcuGAAGCAAg 2 9 647 668 [mm9:10:79620034-79620055:+] 0.4967 140 7 -8.48 -0.1094 MIMAT0003470 mmu-miR-691 59090 Midn aaaaGACGGAGAGAAG-UCCUUa :|| || || || ||||| auggUUG-CUAUCCUCUAGGAAa 2 19 847 868 [mm9:10:79620234-79620255:+] 0.5273 120 0 -15.10 -0.6170 MIMAT0004189 mmu-miR-693-3p 59090 Midn aaugucgGUGUAGACUUUCGACg ||: |:| ||||||| gugggugCAUUUUUUAAAGCUGu 2 17 1406 1428 [mm9:10:79620793-79620815:+] 0.5381 156 7 -14.47 -0.6959 MIMAT0004189 mmu-miR-693-3p 59090 Midn aaugucgguguagacUUUCGACg ||||||| gcucguuggauggaaAAAGCUGa 2 9 640 662 [mm9:10:79620027-79620049:+] 0.4967 140 7 -11.65 -0.4036 MIMAT0003484 mmu-miR-720 59090 Midn acCUCCGGGGUCGCUCUa |||| || ||||||| uaGAGG-CCAAGCGAGAa 2 17 1326 1342 [mm9:10:79620713-79620729:+] 0.5381 158 7 -25.45 -0.4842 MIMAT0003488 mmu-miR-698 59090 Midn uccCUUC-CUUUGCUCUUAc ||:| ||:||||||| guaGAGGCCAAGCGAGAAUu 2 17 1325 1344 [mm9:10:79620712-79620731:+] 0.5381 155 7 -15.31 -0.1103 MIMAT0003493 mmu-miR-703 59090 Midn aagaaaggaAGACUUCCAAAa | | ||||||| uuggcuagcUGUAAAGGUUUu 2 13 1270 1290 [mm9:10:79620657-79620677:+] 0.5381 144 7 -12.04 -0.3927 MIMAT0003499 mmu-miR-709 59090 Midn aggaGGACGGA-GACGGAGg ||| ||| ||||||| acagCCUUCCUCCUGCCUCa 2 16 553 572 [mm9:10:79619940-79619959:+] 0.4941 158 7 -26.17 -0.2384 MIMAT0003507 mmu-miR-500 59090 Midn acuugggaACGGGUCCACGUAa || ::||||||| ggggggugUGAGUGGGUGCAUu 2 15 1395 1416 [mm9:10:79620782-79620803:+] 0.5381 146 7 -16.82 -0.4483 MIMAT0003509 mmu-miR-501-3p 59090 Midn guuuaggaACGGGCCCACGUAa || :|||||||| ggggggugUGAGUGGGUGCAUu 2 15 1395 1416 [mm9:10:79620782-79620803:+] 0.5381 150 7 -19.90 -0.4483 MIMAT0003512 mmu-miR-450b-3p 59090 Midn uacguacguuuuacAAGGGUUa ||||||| uuccuuaaccuucuUUCCCAAu 2 9 776 797 [mm9:10:79620163-79620184:+] 0.5273 140 7 -9.69 -0.2977 MIMAT0004837 mmu-miR-615-5p 59090 Midn cuagGCUCGUGGCCCCUGGGGg :||| :::||||||||| cagaUGAGGGUUGGGGACCCCa 2 19 392 413 [mm9:10:79619779-79619800:+] 0.5166 166 7 -34.67 -0.1243 MIMAT0004210 mmu-miR-804 59090 Midn agguccacuccuuGUUGAGUGu :||||||| cacgaagcccacuUAACUCACa 2 10 534 555 [mm9:10:79619921-79619942:+] 0.4941 141 7 -13.43 -0.3870 MIMAT0004868 mmu-miR-343 59090 Midn agacccguguacUUCCCUCu ||||||| uuccaaaaagaaAAGGGAGg 2 9 1377 1396 [mm9:10:79620764-79620783:+] 0.5381 140 7 -13.04 -0.2404 MIMAT0004883 mmu-miR-466g 59090 Midn acaCACACGUACACAGACAUa || | || ||||||| ccaGUCCCCUUGGGUCUGUAc 2 19 6 26 [mm9:10:79619393-79619413:+] 0.5667 150 7 -10.35 -0.1787 MIMAT0004930 mmu-miR-466d-5p 59090 Midn guacauguacaugcGUGUGUGu ||||||| cucuuuccucccucCACACACc 2 9 747 768 [mm9:10:79620134-79620155:+] 0.5273 140 7 -11.78 -0.1545 MIMAT0004861 mmu-miR-877 59090 Midn gggacGCGGUAGAGGAGAUg :||:| ||||||| augguUGCUA--UCCUCUAg 2 16 847 864 [mm9:10:79620234-79620251:+] 0.5273 144 7 -13.95 -0.3459 MIMAT0005830 mmu-miR-466l 59090 Midn uuauacACACGUACAUAAAUAu || | : ||||||| ggagcuUGGGGGACUAUUUAUa 2 17 798 819 [mm9:10:79620185-79620206:+] 0.5273 144 7 -5.00 -0.2861 MIMAT0005845 mmu-miR-466k 59090 Midn aguguacauguacAUGUGUGUGu | ||||||| ucucuuuccucccUCCACACACc 2 11 746 768 [mm9:10:79620133-79620155:+] 0.5273 142 7 -13.23 -0.1530 MIMAT0005857 mmu-miR-1196 59090 Midn uccgucuccgUCCAUCUAAa | ||||||| uuuuaacucaAUGUAGAUUc 2 11 359 378 [mm9:10:79619746-79619765:+] 0.5217 142 7 -6.30 -0.5332 MIMAT0007878 mmu-miR-1894-3p 59090 Midn gaGGGAAGUGGGAG-AGGGA-ACg ||| | :::||| ||||| || caCCCAUAGUUCUCUUCCCUAUGa 2 21 1539 1562 [mm9:10:79620926-79620949:+] 0.5381 127 0 -22.42 -0.2460 MIMAT0009391 mmu-miR-1928 59090 Midn cucgaccguUACAUCGa ||||||| gcuccaaauAUGUAGCa 2 9 246 262 [mm9:10:79619633-79619649:+] 0.5217 140 7 -8.90 -0.3404 MIMAT0009404 mmu-miR-1940 59090 Midn uugacgaggUGGAAGAGUCAGGAGGUa | :||:|: ||||||| uugugggggAGUUUUUU--UCCUCCAc 2 19 1080 1104 [mm9:10:79620467-79620491:+] 0.5311 147 7 -20.00 -0.6362 MIMAT0009408 mmu-miR-1943 59090 Midn agguccaCGGGUCUAGGAGGGAa |:|: |||||||| ccucgccGUCUCUUUCCUCCCUc 2 17 738 760 [mm9:10:79620125-79620147:+] 0.5273 148 7 -22.03 -0.3080 MIMAT0009424 mmu-miR-1953 59090 Midn gucuucggacucuuGAAAGGGu ||||||| auuuccuuaaccuuCUUUCCCa 2 9 774 795 [mm9:10:79620161-79620182:+] 0.5273 140 7 -16.16 -0.8528 MIMAT0009431 mmu-miR-1958 59090 Midn ugaauGA-CGAAGGUGAAAGGAu || || :| ||||||| cuggcCUCGCCGUCUCUUUCCUc 2 18 734 756 [mm9:10:79620121-79620143:+] 0.5273 148 7 -14.34 -0.1058 MIMAT0009431 mmu-miR-1958 59090 Midn ugAAUGACGAAGGUGAAAGGAu | ::| :||:: :|||||| uuUGGUUUUUUUUUUUUUCCUa 2 21 1348 1369 [mm9:10:79620735-79620756:+] 0.5381 140 6 -12.85 -0.1619 MIMAT0011212 mmu-miR-2136 59090 Midn guguaGAGUCA-GU-UGUGGGUc ||| | || ||||||| cuuucCUCCCUCCACACACCCAc 2 17 749 771 [mm9:10:79620136-79620158:+] 0.5273 146 7 -14.85 -0.2424 MIMAT0011222 mmu-miR-2146 59090 Midn gugUACCUUGGGAAGAGGUg ||| |: ||||||| ucaAUGUAG--AUUCUCCAa 2 18 366 383 [mm9:10:79619753-79619770:+] 0.5217 142 7 -13.21 -0.6997 MIMAT0012771 mmu-miR-432 59090 Midn gacGGGUGAC-UAGAUGAGGUUCu |:|| || | | ||||||| uaaCUCAAUGUAGAUUCUCCAAGc 2 21 362 385 [mm9:10:79619749-79619772:+] 0.5217 155 7 -17.71 -0.5802 MIMAT0012773 mmu-miR-767 59090 Midn acGAGUCUGUUGGUACC-ACGu || || ||:: |||| ||| caCUGAGCCAGUGAUGGUUGCu 2 20 834 855 [mm9:10:79620221-79620242:+] 0.5273 127 0 -17.88 -0.1306 MIMAT0015641 mmu-miR-3470b 59090 Midn ggUCGGACCAGAU-GU-CUCACu :| ||| | || || ||||| ugGGGCUGAUAUAGCAGGAGUGa 2 20 1054 1076 [mm9:10:79620441-79620463:+] 0.5311 122 0 -15.51 -0.5463 MIMAT0000121 mmu-let-7g 59090 Midn uuGACAUGUUUGAUGAU-GGAGu | ||: :::|:||| |||| gcCAGUGAUGGUUGCUAUCCUCu 2 21 840 862 [mm9:10:79620227-79620249:+] 0.5273 120 0 -15.80 -0.1198 MIMAT0000122 mmu-let-7i 59090 Midn uuGUCGUGUUUGAUGAU-GGAGu |||:: :::|:||| |||| gcCAGUGAUGGUUGCUAUCCUCu 2 21 840 862 [mm9:10:79620227-79620249:+] 0.5273 124 0 -17.20 -0.1198 MIMAT0000127 mmu-miR-29b 59090 Midn uuGUGACUAAAGU--UUACC-ACGAu |||||| || :|||| |||| cuCACUGA-GCCAGUGAUGGUUGCUa 2 22 832 856 [mm9:10:79620219-79620243:+] 0.5273 122 0 -21.94 -0.2307 MIMAT0000140 mmu-miR-128 59090 Midn uuucucuggccaaGUGACACu ||||||| uugucucuuccccCACUGUGu 2 9 1214 1234 [mm9:10:79620601-79620621:+] 0.5104 140 7 -12.39 -0.1728 MIMAT0000158 mmu-miR-146a 59090 Midn uuggguaccuuaaGUCAAGAGu :||||||| aggagcccacccaUAGUUCUCu 2 10 1532 1553 [mm9:10:79620919-79620940:+] 0.5381 141 7 -17.85 -0.2027 MIMAT0000159 mmu-miR-149 59090 Midn cccucacuucuGUGCCUCGGUCu ||| ||||||| uucauuuuucuCACUGAGCCAGu 2 13 823 845 [mm9:10:79620210-79620232:+] 0.5273 152 7 -17.54 -0.4717 MIMAT0000215 mmu-miR-186 59090 Midn ucggguuuuccucUUAAGAAAc :||||||| uaccagccuuucuGAUUCUUUu 2 10 120 141 [mm9:10:79619507-79619528:+] 0.5217 141 7 -9.36 -0.2921 MIMAT0000219 mmu-miR-24 59090 Midn gacaAGGACGACUUGACUCGGu |::| || |||||||| uucaUUUUUCU-CACUGAGCCa 2 19 823 843 [mm9:10:79620210-79620230:+] 0.5273 152 7 -18.08 -0.7538 MIMAT0000237 mmu-miR-204 59090 Midn uccguauccUACUGUUUCCCUu | || ||||||| uuuuccaaaAAGA-AAAGGGAg 2 14 1375 1395 [mm9:10:79620762-79620782:+] 0.5381 143 7 -11.67 -0.1999 MIMAT0000237 mmu-miR-204 59090 Midn uccgUAUCCUACUGUUU-CCCUu || :|||:||| |||| ugagAUUUUGUGAUAAAUGGGAu 2 19 1109 1131 [mm9:10:79620496-79620518:+] 0.5311 122 0 -13.48 -0.2343 MIMAT0000368 mmu-miR-291a-3p 59090 Midn cgUGUGUUU--CACCUUCGUGAAa |:::|:| | |||||||| caAUGUAGAUUCUCCAAGCACUUu 2 21 367 390 [mm9:10:79619754-79619777:+] 0.5217 147 7 -12.12 -0.4151 MIMAT0000372 mmu-miR-294 59090 Midn uguguguuuucccUUCGUGAAa |||||||| auguagauucuccAAGCACUUu 2 10 369 390 [mm9:10:79619756-79619777:+] 0.5217 145 7 -11.41 -0.4182 MIMAT0000373 mmu-miR-295 59090 Midn ucUGAGUUUUCAUC----A---UCGUGAAa |||| || |||| | ||||||| uaACUC-AAUGUAGAUUCUCCAAGCACUUu 2 22 362 390 [mm9:10:79619749-79619777:+] 0.5217 145 7 -18.85 -0.4151 MIMAT0000379 mmu-miR-301a 59090 Midn cgaaACUGUUAUGAUAAC-GUGAc ||||:: || ||| |||| acaaUGACGGGCCU-UUGCCACUa 2 20 587 609 [mm9:10:79619974-79619996:+] 0.4941 121 0 -12.89 -0.2081 MIMAT0000380 mmu-miR-302a 59090 Midn agugGUUUUGUACCUUCGUGAAu :|:| : | |||||||| aaugUAGAUUCUCCAAGCACUUu 2 20 368 390 [mm9:10:79619755-79619777:+] 0.5217 151 7 -11.41 -0.4151 MIMAT0000385 mmu-miR-106a 59090 Midn gauggacguGACAAUCGUGAAAc || |||||||| auguagauuCUCCAAGCACUUUa 2 15 369 391 [mm9:10:79619756-79619778:+] 0.5217 146 7 -10.04 -0.5447 MIMAT0000386 mmu-miR-106b 59090 Midn uagacgUGACAG--UCGUGAAAu |:| || |||||||| auguagAUUCUCCAAGCACUUUa 2 16 369 391 [mm9:10:79619756-79619778:+] 0.5217 150 7 -13.64 -0.5447 MIMAT0000529 mmu-miR-20a 59090 Midn gauggacguGAUAUUCGUGAAAu || ||||||||| auguagauuCUCCAAGCACUUUa 2 15 369 391 [mm9:10:79619756-79619778:+] 0.5217 154 7 -14.72 -0.5411 MIMAT0000540 mmu-miR-93 59090 Midn gauggacgugcuugUCGUGAAAc |||||||| auguagauucuccaAGCACUUUa 2 10 369 391 [mm9:10:79619756-79619778:+] 0.5217 145 7 -11.59 -0.5411 MIMAT0000545 mmu-miR-98 59090 Midn uuGUUAUGUUGAAUGAU-GGAGu ||:|: : ||:||| |||| gcCAGUGAUGGUUGCUAUCCUCu 2 21 840 862 [mm9:10:79620227-79620249:+] 0.5273 124 0 -16.09 -0.1198 MIMAT0000567 mmu-miR-329 59090 Midn uuuuucCAAUCGACCC-ACACAa | || |||| ||||| uuuuguGAUAAAUGGGAUGUGUg 2 17 1114 1136 [mm9:10:79620501-79620523:+] 0.5311 120 0 -12.41 -0.1018 MIMAT0000649 mmu-miR-17 59090 Midn gauggacguGACAUUCGUGAAAc || ||||||||| auguagauuCUCCAAGCACUUUa 2 15 369 391 [mm9:10:79619756-79619778:+] 0.5217 154 7 -12.20 -0.5447 MIMAT0000662 mmu-miR-216a 59090 Midn agugucaacggucGACUCUAAu :||||||| uuuccuccacauuUUGAGAUUu 2 10 1095 1116 [mm9:10:79620482-79620503:+] 0.5311 141 7 -11.69 -0.6088 MIMAT0000668 mmu-miR-211 59090 Midn uccGUUUCCUACUGUUUCCCUu |||| | || ||||||| uucCAAA--AAGA-AAAGGGAg 2 20 1377 1395 [mm9:10:79620764-79620782:+] 0.5381 150 7 -12.11 -0.1981 MIMAT0000668 mmu-miR-211 59090 Midn uccguuuccUACUGUUU-CCCUu :|||:||| |||| ugagauuuuGUGAUAAAUGGGAu 2 14 1109 1131 [mm9:10:79620496-79620518:+] 0.5311 121 0 -13.48 -0.2364 MIMAT0000669 mmu-miR-221 59090 Midn cuuuGGGUCG-UCUGU-UACAUCGa :||||| | | ||||||| ccucUCCAGCUCCAAAUAUGUAGCa 2 20 238 262 [mm9:10:79619625-79619649:+] 0.5217 149 7 -18.04 -0.3432 MIMAT0000670 mmu-miR-222 59090 Midn ugGGUC-AUCGGUCUACAUCGa |||| | | ||||||| cuCCAGCUCCAAAUAUGUAGCa 2 20 241 262 [mm9:10:79619628-79619649:+] 0.5217 146 7 -18.43 -0.3516 MIMAT0000743 mmu-miR-379 59090 Midn ggAUGCAAGG--UAUCAGAUGGu || | || || ||||||| uuUAGCUCCCCGAUUGUCUACCc 2 20 141 163 [mm9:10:79619528-79619550:+] 0.5217 150 7 -14.50 -0.2520 MIMAT0001076 mmu-miR-384-3p 59090 Midn uaaCACUUGUUAAAGAUCCUUa || : :| |||||||| augGUUGCUAUCCUCUAGGAAa 2 20 847 868 [mm9:10:79620234-79620255:+] 0.5273 147 7 -11.79 -0.6184 MIMAT0003187 mmu-miR-20b 59090 Midn gauggacguGAUACUCGUGAAAc || |||||||| auguagauuCUCCAAGCACUUUa 2 15 369 391 [mm9:10:79619756-79619778:+] 0.5217 146 7 -10.11 -0.5411 MIMAT0003374 mmu-miR-302b 59090 Midn gaugAUUUUGUACCUUCGUGAAu ||:| : | |||||||| aaugUAGAUUCUCCAAGCACUUu 2 20 368 390 [mm9:10:79619755-79619777:+] 0.5217 155 7 -10.38 -0.4151 MIMAT0003377 mmu-miR-302d 59090 Midn ugUGAGUUU-GUACCUUCGUGAAu |: :|:| : | |||||||| caAUGUAGAUUCUCCAAGCACUUu 2 22 367 390 [mm9:10:79619754-79619777:+] 0.5217 148 7 -12.13 -0.4151 MIMAT0004186 mmu-miR-301b 59090 Midn cgaaACUGUUAUGGUAAC-GUGAc ||||:: :|| ||| |||| acaaUGACGG-GCCUUUGCCACUa 2 20 587 609 [mm9:10:79619974-79619996:+] 0.4941 125 0 -15.55 -0.2234 MIMAT0003475 mmu-miR-146b 59090 Midn ucggauaccuuaaGUCAAGAGu :||||||| aggagcccacccaUAGUUCUCu 2 10 1532 1553 [mm9:10:79620919-79620940:+] 0.5381 141 7 -14.49 -0.2027 MIMAT0004828 mmu-miR-708 59090 Midn gggucgaucuAACAUUCGA-GGAa || |||||| ||| aggguuuuuuUUUUAAGCUGCCUg 2 14 1471 1494 [mm9:10:79620858-79620881:+] 0.5381 121 0 -11.13 -0.5647 MIMAT0004896 mmu-miR-590-3p 59090 Midn ugaucGAAUAUG----UAUUUUAAu ||| ||| |||||||| gucucCUUUUACUGAAAUAAAAUUu 2 17 1641 1665 [mm9:10:79621028-79621052:+] 0.5274 151 7 -6.41 -0.5157

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G066399 Midn Mus musculus 59090

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Midn mmu-miR-693-3p beg:1409 end:1429 pic:3' AATGTCGGTGTAGAC--TTTCGACG 5'& .|||.| |||||||. &5' --------GCATTTTTTAAAGCTGT 3' Midn mmu-miR-693-3p beg:489 end:508 pic:3' AATGTCGGTGTAGACTTTCGACG 5'& |||| |||||||| &5' ------CCACCCCGGAAAGCTG- 3' Midn mmu-miR-703 beg:1271 end:1291 pic:3' AAGAAAGGAAGAC--TTCCAAAA 5'& |. ||| |||||||| &5' ------CTAGCTGTAAAGGTTTT 3' Midn mmu-miR-199a-5p beg:723 end:738 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& ||||.||||||| &5' ----------TCTGGACACTGG- 3' Midn mmu-miR-199bstar beg:723 end:738 pic:3' CTTGTCCATCAGATTTGTGACCC 5'& |||..||||||| &5' ----------TCTGGACACTGG- 3' Midn mmu-miR-705 beg:294 end:317 pic:3' ACGGGTGGGGT--GGAGGGTGG 5'& ||||||||| |||.||.|. &5' --CCCACCCCAGCCCTTCCGCT 3' Midn mmu-miR-294 beg:379 end:391 pic:3' TGTGTGTTTTCCCTTCGTGAAA 5'& ||||||||| &5' -------------AAGCACTTT 3' Midn mmu-miR-720 beg:1325 end:1342 pic:3' ACCTCCGGGGTCGCTCTA 5'& |||||| ||||||| &5' --GAGGCCA-AGCGAGA- 3' Midn mmu-miR-186 beg:122 end:141 pic:3' TCGGGTTTTCCTCTTAAGAAAC 5'& ||||. .||||||| &5' AGCCTTTCT----GATTCTTT- 3' Midn mmu-miR-2141 beg:99 end:111 pic:3' TTGAAAAGACTGTGGAGGA 5'& | ||||||| &5' ---------GTCACCTCC- 3' Midn mmu-miR-128 beg:1224 end:1234 pic:3' TTTCTCTGGCCAAGTGACACT 5'& ||||||| &5' -------------CACTGTG- 3' Midn mmu-miR-762 beg:294 end:311 pic:3' CGAGACAGGGCCGGGGTCGGGG 5'& ||| |||||||||. &5' -------CCCA-CCCCAGCCCT 3' Midn mmu-miR-92astar beg:1121 end:1143 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& |||| |. .| |||||| &5' --AATGGGATGTGTGCCCACC- 3' Midn mmu-miR-1938 beg:1122 end:1143 pic:3' CTGGCTTGATGTTCA-GGGTGGC 5'& |. |.|. || |||||| &5' -ATGGGATGT---GTGCCCACC- 3' Midn mmu-miR-705 beg:1132 end:1156 pic:3' ACGGGTGGGGTG-G-AGGGTGG 5'& |||||||||| | ||. || &5' TGCCCACCCCTGACATCTGTCC 3' Midn mmu-miR-1938 beg:1519 end:1543 pic:3' CTGGCTTGATGTTCA-GGGTGGC 5'& |.|| .||.| |||||| &5' GGCCTCAG-GCAGGAGCCCACC- 3' Midn mmu-miR-705 beg:1533 end:1553 pic:3' ACGGGTGGG-GTGGAGGGTGG 5'& |||||||| .| .||.| &5' -GCCCACCCATAGTTCTC--- 3' Midn mmu-miR-1938 beg:167 end:188 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& || . ||| |||||. &5' --CCTGGTCACATG-CCCACT- 3' Midn mmu-miR-705 beg:177 end:201 pic:3' ACGGGTGGGGTGGAGG-GTGG 5'& |||||||.|.|. || .||| &5' TGCCCACTCTATTCCCTTACC 3' Midn mmu-miR-296-3p beg:283 end:312 pic:3' CCTC--TCGGA-GGT-GGGTTGGGAG 5'& |||| |||| ||| ||||.||||. &5' GGAGGAAGCCACCCACCCCAGCCCTT 3' Midn mmu-miR-1938 beg:309 end:336 pic:3' CTGGCTTGATGT-TCA----GGGTGGC 5'& ||| ||.| || |||||| &5' --CCGCTCTGCCTAGCTCTCCCCACC- 3' Midn mmu-miR-92astar beg:315 end:336 pic:3' CATTACGG-TGGTTAGGGGTGGA 5'& |||| | | |||||||| &5' ----TGCCTAGCTCTCCCCACC- 3' Midn mmu-miR-705 beg:321 end:343 pic:3' ACGGGTGGGGTGGAGGGT-GG 5'& ||.| ||||||| ||| || &5' -GCTCTCCCCACC-CCCTTCC 3' Midn mmu-miR-1938 beg:404 end:428 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& |||| | ||||||||| &5' GACCCCAGGATGAGTCCCACC- 3' Midn mmu-miR-296-3p beg:411 end:437 pic:3' CCT-CTCGGAGGTGGGT-TGGGAG 5'& ||| |||.| |||||| |||| | &5' GGATGAGTC-CCACCCCCACCCCC 3' Midn mmu-miR-705 beg:417 end:440 pic:3' AC-GGGT-GGGGTGGAGGGTGG 5'& | |||| ||||||| |||||| &5' -GTCCCACCCCCACC-CCCACC 3' Midn mmu-miR-92astar beg:412 end:440 pic:3' CATTAC----GGTGGTTA--GGGGTGGA 5'& .||| ||||| ||||||| &5' --GATGAGTCCCACCCCCACCCCCACC- 3' Midn mmu-miR-1938 beg:470 end:497 pic:3' CTGGCTT----GATGTTCAGGGTGGC 5'& .|.|.| ||.| ||||||| &5' -GCTGGATCCCCTGCCCCTCCCACC- 3' Midn mmu-miR-705 beg:470 end:497 pic:3' ACGGGT--GGGGT---GGAGGGTGG 5'& ||. . |||| ||||||||| &5' -GCTGGATCCCCTGCCCCTCCCACC 3' Midn mmu-miR-92astar beg:481 end:497 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& |||| || .|||||| &5' ----TGCC-CC---TCCCACC- 3' Midn mmu-miR-1188 beg:167 end:191 pic:3' AGGACCGG-GT-TGGAGTGTGGT 5'& |||||.| || .|| ||| |.| &5' -CCTGGTCACATGCC-CACTCTA 3' Midn mmu-miR-1188 beg:313 end:336 pic:3' AGGACCGGGTTG-GAGT-GTGGT 5'& .|| |||.|.| ||| |||| &5' -TCT-GCCTAGCTCTCCCCACC- 3' Midn mmu-miR-1982star beg:476 end:495 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& ||||| | |||||||| &5' --TCCCCT-GCCCCTCCCA- 3' Midn mmu-miR-1943 beg:742 end:760 pic:3' AGGTCCACGGGTCTAGGAGGGAA 5'& |.|. |||||||| &5' -------GTCTCTTTCCTCCCT- 3' Midn mmu-miR-698 beg:1325 end:1344 pic:3' TCCCTTCC--TTTGCTCTTAC 5'& .||| ||.||||||| &5' ----GAGGCCAAGCGAGAAT- 3' Midn mmu-miR-503 beg:1000 end:1016 pic:3' GACGTCATGACAAGGGCGACGAT 5'& | | |||||||. &5' ----------GGGCGCGCTGCTG 3' Midn mmu-miR-432 beg:371 end:385 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& |||. ||||||| &5' ---------GATT--CTCCAAG- 3' Midn mmu-miR-709 beg:557 end:579 pic:3' AGGAGGACGGAGACGGAGG 5'& |||||||||||| |.|||| &5' TCCTCCTGCCTCAGTCTCC 3' Midn mmu-miR-1958 beg:739 end:756 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& || .| ||||||| &5' -------GCCGTCTCTTTCCT- 3' Midn mmu-miR-149 beg:831 end:845 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& ||| ||||||| &5' -----------CACTGAGCCAG- 3' Midn mmu-miR-17 beg:379 end:391 pic:3' GATGGACGTGACATTCGTGAAAC 5'& ||||||||| &5' -------------AAGCACTTT- 3' Midn mmu-miR-335-5p beg:620 end:632 pic:3' TGTAAAAAGCAATAACGAGAACT 5'& ||||||||| &5' -------------TTGCTCTTG- 3' Midn mmu-miR-501-3p beg:1400 end:1417 pic:3' GTTTAGGAACGGGCCCACGTAA 5'& || .||||||||| &5' --------TGAGTGGGTGCATT 3' Midn mmu-miR-379 beg:147 end:163 pic:3' GGATGCAAGGTAT-CAGATGGT 5'& ||. ||||||| &5' --------CCGATTGTCTACC- 3' Midn mmu-miR-466g beg:13 end:26 pic:3' ACACACACGTACACAGACATA 5'& || ||||||| &5' ----------TGGGTCTGTA- 3' Midn mcmv-miR-m01-1 beg:1084 end:1102 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& | ||| ||.||||| &5' ------GGAGTTTTTTTCCTC- 3' Midn mcmv-miR-m01-1 beg:737 end:757 pic:3' GGCAAGCTGCAATAAGAGGAGA 5'& ||| ||| |.||||| &5' ----TCGCCGTCTCTTTCCTC- 3' Midn mcmv-miR-m21-1 beg:470 end:485 pic:3' GCCGAACTTGCACAGGGGATA 5'& || ||.| ||||||. &5' --GC-TGGA----TCCCCTG- 3' Midn mcmv-miR-m21-1 beg:15 end:35 pic:3' GCCGAACTTGCACAGGGGATA 5'& || || || |||||||| &5' -GGTCTGTACA--TCCCCTAT 3' Midn mcmv-miR-M23-2 beg:1209 end:1229 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& | |||| |. |||||| &5' -C-CTTGTCTCTT-CCCCCA- 3' Midn mcmv-miR-M23-2 beg:1557 end:1574 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& ||| ||| .||||| &5' -----TGA-CGACTTCCCCA- 3' Midn mcmv-miR-M23-2 beg:741 end:763 pic:3' GGC-GAACT-GGCTCCGGGGGTA 5'& ||| || || ||.||| &5' CCGTCTCTTTCCTC--CCTCCA- 3' Midn mcmv-miR-M23-2 beg:417 end:438 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& |. ||| |||||| &5' --GTCCCACCCCCACCCCCA- 3' Midn mmu-let-7a beg:545 end:573 pic:3' TTGATATGTTGGAT----GATGGAGT 5'& |||| |||.||| ||.||||| &5' AACTC-ACAGCCTTCCTCCTGCCTCA 3' Midn mmu-let-7b beg:545 end:573 pic:3' TTGGTGTGTTGGAT----GATGGAGT 5'& |||. ||||.||| ||.||||| &5' AACT-CACAGCCTTCCTCCTGCCTCA 3' Midn mmu-let-7b beg:757 end:783 pic:3' TTGGTGTGT---TGGATGATGGAGT 5'& ||||||| ||.||.| |||.| &5' --CCACACACCCACTTATTTCCTTA 3' Midn mmu-let-7c beg:552 end:573 pic:3' TTGGTATGTTGGAT----GATGGAGT 5'& |||.||| ||.||||| &5' ------ACAGCCTTCCTCCTGCCTCA 3' Midn mmu-let-7c-1star beg:11 end:28 pic:3' CCTTTCGATCTTCCA-ACATGTC 5'& || .||| |||||| &5' ------CTT--GGGTCTGTACA- 3' Midn mmu-let-7c-1star beg:872 end:896 pic:3' CCTTTCGATCT--TCCAACATGTC 5'& |||| ||.|. |||||||| . &5' -GAAA-CTGGGGTAGGTTGTAGG- 3' Midn mmu-let-7d beg:553 end:572 pic:3' TTGATACGTT-GGATGATGGAGA 5'& || ||| ||.|||| &5' ------GCCTTCCTCCTGCCTC- 3' Midn mmu-let-7e beg:545 end:573 pic:3' TTGATATGTTGG----AGGATGGAGT 5'& |||| |||.|| ||||.||||| &5' AACTC-ACAGCCTTCCTCCTGCCTCA 3' Midn mmu-let-7f beg:559 end:573 pic:3' TTGATATGTTAGATGATGGAGT 5'& || ||.||||| &5' -----------CTCCTGCCTCA 3' Midn mmu-let-7g beg:559 end:573 pic:3' TTGACATGTTTGATGATGGAGT 5'& || ||.||||| &5' -----------CTCCTGCCTCA 3' Midn mmu-let-7i beg:551 end:573 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& ||||| | || ||.||||| &5' -ACAGC-CTTCCTCCTGCCTCA 3' Midn mmu-miR-106b beg:371 end:392 pic:3' TAGACGT-GACAGTCGTGAAAT 5'& | || ||||||||| &5' ----GATTCTCCAAGCACTTTA 3' Midn mmu-miR-1188 beg:927 end:950 pic:3' AGGACCGGGTTGGAGTGTGGT 5'& ||| ||||||.||| |||. &5' TCCAGGCCCAGCCTGCCACT- 3' Midn mmu-miR-1191 beg:1051 end:1076 pic:3' ATCCCGA-TGTATCATTCTGAC 5'& |.||||| |.|||| |.|| || &5' TGGGGCTGATATAGCAGGAGTG 3' Midn mmu-miR-1196 beg:1593 end:1611 pic:3' TCCGTCTCCGTCCATCTAAA 5'& .|||||.|| .|| ||| &5' GGGCAGGGG-GGGAAGA--- 3' Midn mmu-miR-1224 beg:232 end:251 pic:3' GAGGTGGAGGGGTC-AGGAGTG 5'& |||||||.|||| ||| &5' --CCACCTCTCCAGCTCC---- 3' Midn mmu-miR-1224 beg:557 end:580 pic:3' GAGGTGGA-GGGGTCAGGAGTG 5'& ||| ||| ||.||||| | | &5' -TCCTCCTGCCTCAGTCTCC-C 3' Midn mmu-miR-125a-3p beg:570 end:593 pic:3' CC-GAGGGTTCTTGGAGTGGACA 5'& | |||||||| .|. || || &5' -GTCTCCCAAGTGCTACAA-TG- 3' Midn mmu-miR-128 beg:1184 end:1206 pic:3' TTTCTCTGGC--CAAG---TGACACT 5'& || |||| .|||||| &5' -------CCTTTGTTCTAGGCTGTGA 3' Midn mmu-miR-129-3p beg:1283 end:1302 pic:3' TACGAAAAACCCCATTC-CCGAA 5'& |.||||||||||..| || &5' --GTTTTTTGGGGTGGGTGG--- 3' Midn mmu-miR-129-5p beg:499 end:521 pic:3' CGTTCGG--GTCTGGCGTTTTTC 5'& ||||. .||||. || |.|| &5' --AAGCTGATAGACT-CACAGAG 3' Midn mmu-miR-130bstar beg:1664 end:1677 pic:3' TCATCACGTTGTCCCTTTCTCA 5'& ||||.||||| &5' -----------AGGGGAAGAG- 3' Midn mmu-miR-133astar beg:112 end:127 pic:3' TAAACCAAGGTAAAATGGTCG 5'& ||| |||||||| &5' --------CCAC-TTACCAGC 3' Midn mmu-miR-135astar beg:1539 end:1562 pic:3' GCGGTGCCGAGGTTAGGGATAT 5'& ||| |.||. |||||||. &5' --CCATAGTTCTCTTCCCTATG 3' Midn mmu-miR-138 beg:106 end:127 pic:3' GCCGGACTAA-GTGTTGTGGTCGA 5'& || ||| ||| .|||||| &5' ---CC-GATGCCACT-TACCAGC- 3' Midn mmu-miR-145 beg:51 end:72 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& ||| || |.||||||| &5' --GGACGCCAC---AGACTGGAC 3' Midn mmu-miR-145 beg:861 end:884 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& ||| .|||||||. &5' --GGAAAAAAAAAGAAACTGGG- 3' Midn mmu-miR-145 beg:1503 end:1522 pic:3' TCCCTAAGGACCC--TTTTGACCTG 5'& ||||| .|.|.|||| &5' --------CTGGGCTGAGATTGGA- 3' Midn mmu-miR-145star beg:857 end:868 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||.||||| &5' -------------TCTAGGAA- 3' Midn mmu-miR-146a beg:1532 end:1553 pic:3' TTGGGTACCTTAAGTCAAGAGT 5'& |.|||| .||||||| &5' AGCCCACCCA---TAGTTCTC- 3' Midn mmu-miR-146b beg:1532 end:1553 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& |||| .||||||| &5' AGCCCACCCA---TAGTTCTC- 3' Midn mmu-miR-146bstar beg:1581 end:1596 pic:3' TGGTCTTGACTCAGGGATCCCG 5'& .||| ||||.||| &5' GCCA---------CCCTGGGG- 3' Midn mmu-miR-150 beg:791 end:811 pic:3' GTGACCATGTT-CC-C-AACCCTCT 5'& ||| || | |||||.|| &5' --------CAATGGAGCTTGGGGGA 3' Midn mmu-miR-151-3p beg:247 end:268 pic:3' GGAGTTCCT-CGGAGTCAGATC 5'& ||| |. ||||||. &5' ---CAAATATGTAGCAGTCTG- 3' Midn mmu-miR-155 beg:1565 end:1584 pic:3' TGGGGATAGTGTTAATCGTAATT 5'& .||| ||. ||||||||. &5' -TCCC-----CAGATAGCATTAG 3' Midn mmu-miR-1839-5p beg:303 end:323 pic:3' GTTCTGGACAAGAT-AGATGGAA 5'& .|| ||| |||.||| &5' ----GCCC-TTCCGCTCTGCCT- 3' Midn mmu-miR-185 beg:739 end:755 pic:3' AGTCCTTGACGGAA-AGAGAGGT 5'& ||| |||.||| &5' ---------GCCGTCTCTTTCC- 3' Midn mmu-miR-188-3p beg:1606 end:1625 pic:3' ACGTTTGGGACGTACACCCTC 5'& .||.|| || ||||||. &5' ---GAATCCGGC-TGTGGGG- 3' Midn mmu-miR-188-5p beg:828 end:850 pic:3' GGGAG-GTGGTACGTTCCCTAC 5'& ..|| |||.. || || |||| &5' -TTTCTCACTGAGCCAGTGATG 3' Midn mmu-miR-188-5p beg:677 end:696 pic:3' GGGAGG-TGGTACGTTCCCTAC 5'& ||. |.|| ||..|||||| &5' ---TCTGATCAGGCGGGGGATG 3' Midn mmu-miR-1892 beg:774 end:797 pic:3' TAGGAG--GGAGGGCAGGGGTTTA 5'& ||||. |||.|. |.||||| &5' -TCCTTAACCTTCT-TTCCCAA-- 3' Midn mmu-miR-1894-3p beg:773 end:795 pic:3' GAGGGAAGTGGGAG--AGGGAACG 5'& |.|||| |||.|| |||| &5' -TTCCTTAACCTTCTTTCCC---- 3' Midn mmu-miR-1894-5p beg:995 end:1006 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& ||||||.| &5' --------------GGGGAGGG 3' Midn mmu-miR-1894-5p beg:878 end:903 pic:3' TCTCCGTCCACCATCC-CCTCTC 5'& |.||.|||| ||||| ||.|.| &5' -GGGGTAGGTTGTAGGAGGGGGG 3' Midn mmu-miR-1897-5p beg:1360 end:1384 pic:3' GGGGGAGAAAGAGGTAGGTTTC 5'& . ||| |||.|. |||||| &5' TTTCCTATTTTTTTTTCCAAA- 3' Midn mmu-miR-1897-5p beg:740 end:763 pic:3' GGGGGAGAAA-GAGGTAGGTTTC 5'& || .|||||| |||| |||| &5' CCGTCTCTTTCCTCCCTCCA--- 3' Midn mmu-miR-18astar beg:39 end:52 pic:3' GTCTTCCTCGTGAATCCCGTCA 5'& ||| .|||||| &5' ---------CAC--GGGGCAG- 3' Midn mmu-miR-1902 beg:912 end:928 pic:3' TTCAGTACGGATGACGTGGAGA 5'& | |||.|||||| &5' ---------CCCCTGTACCTCT 3' Midn mmu-miR-1903 beg:945 end:966 pic:3' ACAGAGTCCTTCTTCTTCTTCC 5'& || .||| ..|||||.|| &5' ---CTGGGGAT-GGGAAGAGGG 3' Midn mmu-miR-1904 beg:33 end:54 pic:3' GGAGGGAG-GTCTCCTCGTCTTG 5'& |||| || ||.||||.| &5' --TCCCATACAC-GGGGCAGGA- 3' Midn mmu-miR-1928 beg:242 end:262 pic:3' CTCGACCGT--TACATCGA 5'& |||| ||||||| &5' -AGCTCCAAATATGTAGC- 3' Midn mmu-miR-1935 beg:588 end:606 pic:3' TCTCTAGGC-GGTCGGAGACGGA 5'& .| | .||||.|||| &5' -------TGACGGGCCTTTGCC- 3' Midn mmu-miR-1937a beg:1247 end:1259 pic:3' ACCCCCGAGCAGGCCCTAA 5'& ||..||||| &5' ---------GTTTGGGAT- 3' Midn mmu-miR-1937b beg:76 end:94 pic:3' ACCCCCGAG-C-AGGCCCTA 5'& ||| | ||.|||. &5' ----GGCCCAGCTCTGGGG- 3' Midn mmu-miR-1938 beg:230 end:240 pic:3' CTGGCTTGATGTTCAGGGTGGC 5'& ||||||| &5' --------------TCCCACC- 3' Midn mmu-miR-1941-5p beg:558 end:580 pic:3' TTCGGAGACATGGTCGTAGAGGGA 5'& |||| |.|| .|||||| &5' ---CCTCC-TGCCTCAGTCTCCC- 3' Midn mmu-miR-1942 beg:1133 end:1154 pic:3' GTTGGTCTACTTCTGTAGACT 5'& .|| |||||||| &5' --GCCCACCCCTGACATCTG- 3' Midn mmu-miR-1944 beg:46 end:66 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& |||.| |||. |||||| &5' ---CAGGAG--GACGC----CACAGA- 3' Midn mmu-miR-1946a beg:601 end:619 pic:3' TTTTCACACACGGTGGTGACGGGCCGA 5'& ||||||.| |||..|||| &5' ---------TGCCACTA-TGCTTGGCT 3' Midn mmu-miR-1946b beg:592 end:618 pic:3' TTTTCGTACACGGTGGTGACGGGCCG 5'& ..|| ||||||.| |||..||| &5' --GGGCCTTTGCCACTA-TGCTTGGC 3' Midn mmu-miR-1948 beg:311 end:325 pic:3' GACATGCTCACGAGACGGATTT 5'& ||||||||||. &5' ----------GCTCTGCCTAG- 3' Midn mmu-miR-1952 beg:1388 end:1407 pic:3' GTCTTCCTCCCAC-CTCT 5'& .|.|||.||||| ||| &5' -GGGAGGGGGGTGTGAG- 3' Midn mmu-miR-1952 beg:889 end:909 pic:3' GTCTTCCTCCCACCTCT 5'& .||.|||.||| ||| &5' TAGGAGGGGGGCCCAGA 3' Midn mmu-miR-1953 beg:689 end:707 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& .|| |||| ||||.|| &5' -GGATGCCT-----CTTTTCC- 3' Midn mmu-miR-1953 beg:739 end:756 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& ||| ||||||. &5' -----GCCGTCT--CTTTCCT- 3' Midn mmu-miR-1954 beg:438 end:451 pic:3' TTGTCCCAGAGTGAGACGTCA 5'& || ||||||| &5' ----------CAGTCTGCAG- 3' Midn mmu-miR-1957 beg:937 end:951 pic:3' CAGTATACGAGATGGTGAC 5'& || ||.|||||| &5' -------GC-CTGCCACTG 3' Midn mmu-miR-1957 beg:104 end:120 pic:3' CAGTATACGAG---ATGGTGAC 5'& ||| |.||||| &5' --------CTCCGATGCCACT- 3' Midn mmu-miR-1959 beg:12 end:33 pic:3' GAGGTGACTCG---ATGTAGGGG 5'& || .||.|. ||||||||| &5' --CC-TTGGGTCTGTACATCCCC 3' Midn mmu-miR-1961 beg:555 end:573 pic:3' AAGATTGATGATGGAGT 5'& || || ||.||||| &5' --CTTCCTCCTGCCTCA 3' Midn mmu-miR-1962 beg:196 end:216 pic:3' TACACAGG-GTCACGGTCGGAGA 5'& || ..|| |.|||||| &5' ------CCATGGTCACGGCCTCT 3' Midn mmu-miR-1962 beg:108 end:131 pic:3' TAC-ACAGGGTCACGGTCGGAGA 5'& | || || |||||||.| &5' --GATG-CCACTTACCAGCCTTT 3' Midn mmu-miR-196a beg:299 end:324 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& ||||.| ||.|||| &5' CCCAGCCCTTCCGCTCTGCCTA 3' Midn mmu-miR-1971 beg:925 end:944 pic:3' AGAG--TCGGGTCGGAAATG 5'& |||| .||||||||| &5' TCTCCAGGCCCAGCCT---- 3' Midn mmu-miR-1971 beg:559 end:577 pic:3' AGAGT-CGG-GTCGGAAATG 5'& ||| ||| |||.|| &5' -CTCCTGCCTCAGTCT---- 3' Midn mmu-miR-1982.1 beg:1293 end:1310 pic:3' GACACCCTCTTGTATCCCACTCT 5'& ||||| |||||.|| &5' --GTGGGT-------GGGTGGGA 3' Midn mmu-miR-1982star beg:923 end:944 pic:3' GGAGGGGTCCTGGGA-GGGTT 5'& |.||.||||| ||| ||. &5' CTTCTCCAGG-CCCAGCCT-- 3' Midn mmu-miR-1982star beg:324 end:344 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& ||||||| ||||.||| &5' -CTCCCCACC-CCCTTCCA- 3' Midn mmu-miR-1982star beg:561 end:582 pic:3' GGA-GGGGTCCTGGGAGGGTT 5'& ||| ||.||| .||||||| &5' CCTGCCTCAG---TCTCCCAA 3' Midn mmu-miR-199a-5p beg:986 end:1001 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& || ||.||||| &5' -----------CTCCACGCTGGG 3' Midn mmu-miR-199bstar beg:986 end:1001 pic:3' CTTGTCCATCAGATTTGTGACCC 5'& || ||.||||| &5' -----------CTCCACGCTGGG 3' Midn mmu-miR-199bstar beg:1006 end:1025 pic:3' CTTGTCCATCAGATTTGTGACCC 5'& .| | |.||| |||.||| &5' --GCTGCTGGTCC--ACATTGG- 3' Midn mmu-miR-202-3p beg:912 end:928 pic:3' AGAAGGGTACGCGATATGGAGA 5'& ||| ||.||||||| &5' ----CCC-----CTGTACCTCT 3' Midn mmu-miR-206 beg:765 end:790 pic:3' GGTGTGTGAAGGAATGT-AAGGT 5'& |||| .|.||||||| |||. &5' CCACTTATTTCCTTAACCTTCT- 3' Midn mmu-miR-207 beg:1387 end:1414 pic:3' CTCCCTCCTCTCGG--TCCTCTTCG 5'& |||||||.|.|. || |. || &5' -AGGGAGGGGGGTGTGAGTGGGTGC 3' Midn mmu-miR-207 beg:1589 end:1610 pic:3' CTCCCTCC-TCTCGGTCCTCTTCG 5'& |||.|| ||.| ||.|||| &5' --GGGGGGCAGGG---GGGGAAG- 3' Midn mmu-miR-20a beg:371 end:392 pic:3' GATGGACGT-GATATTCGTGAAAT 5'& | || |||||||||| &5' ------GATTCTCCAAGCACTTTA 3' Midn mmu-miR-211 beg:1663 end:1674 pic:3' TCCGTTTCCTACTGTTTCCCTT 5'& .|.||||| &5' --------------GAGGGGAA 3' Midn mmu-miR-2136 beg:751 end:771 pic:3' GTGTAGAGTCAGT--TGTGGGTC 5'& ||| || ||||||| &5' -----CTCCCTCCACACACCCA- 3' Midn mmu-miR-2136 beg:1536 end:1545 pic:3' GTGTAGAGTCAGTTGTGGGTC 5'& |||||| &5' --------------CACCCA- 3' Midn mmu-miR-2136 beg:282 end:301 pic:3' GTGTAGAGTCAGTT-GTGGGTC 5'& | || |. |||||| &5' -----CGGAGGAAGCCACCCA- 3' Midn mmu-miR-2141 beg:224 end:243 pic:3' TTGAAAAGACTGTGGAGGA 5'& ||| || ||||||. &5' --CTTCCCTCCCACCTCT- 3' Midn mmu-miR-2146 beg:227 end:246 pic:3' GTGTACCTTGGGA------AGAGGTG 5'& |||| |||||| &5' ---------CCCTCCCACCTCTCCA- 3' Midn mmu-miR-2146 beg:366 end:383 pic:3' GTGTACCTTGGGAAGAGGTG 5'& ||| |. ||||||| &5' ---ATGTAGA--TTCTCCA- 3' Midn mmu-miR-2146 beg:919 end:934 pic:3' GTGTACCTTGG-GAAGAGGTG 5'& ||| |||||||| &5' --------ACCTCTTCTCCA- 3' Midn mmu-miR-218-1star beg:1142 end:1162 pic:3' CCACGAACTGCCTT--GGTACAAA 5'& |||| ||||||| &5' ------TGACATCTGTCCATGTT- 3' Midn mmu-miR-220 beg:961 end:979 pic:3' TTCACAGACTGTGACACCACC 5'& ..|| ||||. |||||| &5' GGGT-TCTGG-ACTGTG---- 3' Midn mmu-miR-221 beg:239 end:262 pic:3' CTTTGGGTCGTCTGT--TACATCGA 5'& .||||| ||||||| &5' ----TCCAGCTCCAAATATGTAGC- 3' Midn mmu-miR-222 beg:239 end:262 pic:3' TGGGTCATCGGTC--TACATCGA 5'& .|||| ||| ||||||| &5' -TCCAGCT-CCAAATATGTAGC- 3' Midn mmu-miR-23a beg:1248 end:1263 pic:3' CCTTTAGGGACCGTTACACTA 5'& ..||| .|||||| &5' -------TTTGG-GATGTGA- 3' Midn mmu-miR-23b beg:1248 end:1263 pic:3' CCATTAGGGACCGTTACACTA 5'& ..||| .|||||| &5' -------TTTGG-GATGTGA- 3' Midn mmu-miR-24 beg:824 end:844 pic:3' GACAAGGACGACTTGACTCGGT 5'& ||..| || ||||||||| &5' ---TTTTT-CTC-ACTGAGCCA 3' Midn mmu-miR-27a beg:1185 end:1207 pic:3' CGCCTTGAATCGG----TGACACTT 5'& ||| |.. .||||||| &5' ------CTTTGTTCTAGGCTGTGAA 3' Midn mmu-miR-2861 beg:558 end:580 pic:3' GGCGGGCGGCGGTCCG-GGG 5'& || ||.||| .||| | ||| &5' CCTCCTGCC-TCAGTCTCCC 3' Midn mmu-miR-2861 beg:915 end:939 pic:3' GGCG-GGCGGC--GGTCCGGGG 5'& |.|. || |. |||||||| &5' CTGTACCTCTTCTCCAGGCCC- 3' Midn mmu-miR-294star beg:1095 end:1113 pic:3' TCTATCCCGGAGGT--AAAACTCA 5'& |||||| ||||||| &5' --------CCTCCACATTTTGAG- 3' Midn mmu-miR-295 beg:361 end:391 pic:3' TCTGAGTTTTCATCA-------TCGTGAAA 5'& |||||| |||| |||||||| &5' --ACTCAAT-GTAGATTCTCCAAGCACTTT 3' Midn mmu-miR-296-3p beg:108 end:131 pic:3' CCTCT-CGGAGGTGGGTTGGGAG 5'& || ||| |. |||.||.|. &5' ---GATGCCACTTACCAGCCTTT 3' Midn mmu-miR-296-5p beg:882 end:906 pic:3' TGTCCTAAC--TC-CCCCCCGGGA 5'& .||| ||| .| ||||||||| &5' -TAGG-TTGTAGGAGGGGGGCCC- 3' Midn mmu-miR-298 beg:198 end:218 pic:3' CCCTTCTTGTCGGGA--GGAGACGG 5'& |..|.| ||||||| &5' -------ATGGTCACGGCCTCTGC- 3' Midn mmu-miR-3072 beg:957 end:980 pic:3' TCTTCCGAAGGACCTCCCCCGT 5'& |||.|| |.||||| | || &5' AGAGGGG-TTCTGGACTGTGC- 3' Midn mmu-miR-3072 beg:76 end:98 pic:3' TCTTCCGAAG-GACCTCCCCCGT 5'& ||| || .||||||| &5' ----GGCCCAGCTCTGGGGGGCA 3' Midn mmu-miR-3099 beg:715 end:741 pic:3' AGGGGTTGGAGAGA-----GATCGGAT 5'& ||| ||||||| ||.|||| &5' ---CCATCCTCTCTGGACACTGGCCT- 3' Midn mmu-miR-30c-1star beg:473 end:495 pic:3' CCTCATTTGTTGGGAGAGGGTC 5'& ||| .||| |||||| &5' GGATCCCCT-GCCC-CTCCCA- 3' Midn mmu-miR-30c-2star beg:220 end:238 pic:3' TCTCATTTGTCGGAA---GAGGGTC 5'& .||| |||||| &5' ---------GGCCCTTCCCTCCCA- 3' Midn mmu-miR-30c-2star beg:482 end:495 pic:3' TCTCATTTGTCGGAAGAGGGTC 5'& ||| |||||| &5' ----------GCCC-CTCCCA- 3' Midn mmu-miR-31 beg:614 end:634 pic:3' GTCGATACGGT-CGTAGAACGGA 5'& .|||. ||| || ||||||| &5' -GGCTG-GCCTTGC-TCTTGCC- 3' Midn mmu-miR-324-5p beg:679 end:698 pic:3' TGTGGTTACGGGATCCCCTACGC 5'& |.||. || .|||||||| &5' --ATCAG-GC---GGGGGATGC- 3' Midn mmu-miR-327 beg:475 end:492 pic:3' TAGGAGTACGGGGAGTTCA 5'& |||| | |||||||| &5' ATCC-CCTGCCCCTC---- 3' Midn mmu-miR-330star beg:1444 end:1458 pic:3' AGAGACGTCCGGGACACGAAACG 5'& . ||||.|||| &5' -----------TGTGTGTTTTG- 3' Midn mmu-miR-337-3p beg:1052 end:1063 pic:3' TCCGTAGTATATCCTCGACTT 5'& ||.||||| &5' ------------GGGGCTGA- 3' Midn mmu-miR-337-3p beg:646 end:663 pic:3' TCCGTAGTATATCC---TCGACTT 5'& ||.| ||||||| &5' ---------ATGGAAAAAGCTGAA 3' Midn mmu-miR-339-5p beg:1581 end:1604 pic:3' GCACTCGA--GGACCTCCTGTCCCT 5'& ||| |||||.||.|||||. &5' ----AGCCACCCTGGGGGGCAGGGG 3' Midn mmu-miR-344 beg:463 end:481 pic:3' TGTCAGTCCGAAACCGATCTAGT 5'& ||||| |||.|||| &5' -----CAGGCCA--GCTGGATC- 3' Midn mmu-miR-3470b beg:934 end:958 pic:3' GGTCGGACCA-GATGTCTCACT 5'& |||||||| ||. .|| ||. &5' CCAGCCTGCCACTGGGGA-TGG 3' Midn mmu-miR-3473 beg:232 end:246 pic:3' CCGACTCGGTAGAGAGGT 5'& ||| ||||||| &5' -------CCACCTCTCCA 3' Midn mmu-miR-3475 beg:232 end:246 pic:3' AAGTTTGGTACACGGAGGTCT 5'& ||| .|||||| &5' ------CCACC--TCTCCAG- 3' Midn mmu-miR-3475 beg:919 end:936 pic:3' AAGTTTGGTACACGGAGGTCT 5'& ||| .||||||. &5' -----ACCTCT--TCTCCAGG 3' Midn mmu-miR-361 beg:1041 end:1065 pic:3' CATGGGGACCTCTAA---GACTATT 5'& ||||| ||| |||||| &5' ---CCCCTTGAGTTGGGGCTGATA- 3' Midn mmu-miR-376b beg:1550 end:1563 pic:3' TTCACCTACAAGGAGATACTA 5'& |||| |||||| &5' ---------TTCC-CTATGA- 3' Midn mmu-miR-376cstar beg:1618 end:1632 pic:3' ATTTGTATCTTCCTTATAGGTG 5'& ||..||||||| &5' -----------GGGGTATCCAC 3' Midn mmu-miR-382 beg:1551 end:1570 pic:3' GCTTAGGTGGTGCTTGTTGAAG 5'& ||| |.|.| ||.||||| &5' ----TCC-CTATG-ACGACTTC 3' Midn mmu-miR-383 beg:119 end:137 pic:3' TCGGTGTCAGTGGAAGACTAGA 5'& | ||| | |.|||||||. &5' ---C-CAG-C-CTTTCTGATT- 3' Midn mmu-miR-423-5p beg:471 end:492 pic:3' TTTCAGAGCGAGA-GACGGGGAGT 5'& || | || ||||||||| &5' -----CTGGATCCCCTGCCCCTC- 3' Midn mmu-miR-432 beg:912 end:936 pic:3' GACGGGTGACT---AGATGAGGTTCT 5'& ||| ||| ||| |||||.| &5' ---CCC-CTGTACCTCTTCTCCAGG- 3' Midn mmu-miR-450a-3p beg:365 end:383 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& ||||.|.| ||.|||| &5' ---AATGTAGAT--TCTCCAA- 3' Midn mmu-miR-450a-3p beg:129 end:155 pic:3' TACTTACGTT---TCGTAGGGGTTA 5'& ||| ||| |||||.|| &5' -TGATTCTTTTTTAGC-TCCCCGAT 3' Midn mmu-miR-450b-3p beg:563 end:582 pic:3' TACGTACGTTTTACAAGGGTTA 5'& ||| |||||| &5' -----TGCCTCAGTCTCCCAA- 3' Midn mmu-miR-450b-3p beg:787 end:798 pic:3' TACGTACGTTTTACAAGGGTTA 5'& |||||||| &5' --------------TTCCCAAT 3' Midn mmu-miR-450b-3p beg:253 end:275 pic:3' TACGTACGTTTTACAAGGGTTA 5'& |||.| |||. |||||||.. &5' ATGTA-GCAGTCTGTTCCCGG- 3' Midn mmu-miR-455 beg:963 end:978 pic:3' CACATATACGGGCACCTGACG 5'& |..| |||||||. &5' --------GTTC-TGGACTGT 3' Midn mmu-miR-465a-3p beg:155 end:177 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||| |||||.|| &5' TCTACCCCGCAT--CCCTGGTC 3' Midn mmu-miR-465b-3p beg:155 end:177 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||| |||||.|| &5' TCTACCCCGCAT--CCCTGGTC 3' Midn mmu-miR-465c-3p beg:155 end:177 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||| |||||.|| &5' TCTACCCCGCAT--CCCTGGTC 3' Midn mmu-miR-485 beg:113 end:131 pic:3' CTTAAGTAGTGCC-GGTCGGAGA 5'& ||| |||||||.| &5' --------CACTTACCAGCCTTT 3' Midn mmu-miR-488 beg:1634 end:1652 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& ||||| | |||||.| &5' --CCAAGT--CT-CCTTTTA- 3' Midn mmu-miR-490 beg:345 end:360 pic:3' GTCGTACCTCAGG--AGGTCCAAC 5'& || |.|||||| &5' -----------CCAATTCAGGTT- 3' Midn mmu-miR-491 beg:312 end:335 pic:3' GGAGTACCTTCCCAAGGGGTGA 5'& ||| || ||||||| &5' -CTCTGCCTAGCTCTCCCCAC- 3' Midn mmu-miR-499 beg:1421 end:1434 pic:3' TTTGTAGTGACGTTCAGAATT 5'& || |||||.| &5' ----------GCT-GTCTTGA 3' Midn mmu-miR-540-3p beg:408 end:428 pic:3' GGTCCTAG-CTGGAGACTGGA 5'& ||||||| | || | ||| &5' CCAGGATGAGTCC-C--ACC- 3' Midn mmu-miR-615-5p beg:393 end:413 pic:3' CTAGGCTCGTGGCCCCTGGGGG 5'& .||| . ||||||||| &5' ----TGAGGGTTGGGGACCCC- 3' Midn mmu-miR-654-5p beg:173 end:202 pic:3' TGTGTACA----AGACGTC-GAATGGT 5'& |||||| ||| ||||||| &5' -CACATGCCCACTCTATTCCCTTACCA 3' Midn mmu-miR-654-5p beg:110 end:125 pic:3' TGTGTACAAGACGTCGAATGGT 5'& ||| ||||||| &5' ----------TGCCACTTACCA 3' Midn mmu-miR-654-5p beg:613 end:635 pic:3' TGTGTACAAG-ACGTCGAATGGT 5'& .| || | ||| |||.||| &5' --GC-TGGCCTTGCT-CTTGCCA 3' Midn mmu-miR-666-5p beg:962 end:984 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& ||.||| . |||||||.|| &5' GGTTCTGGA--CTGTGCCTGC- 3' Midn mmu-miR-669g beg:351 end:374 pic:3' TAGTACAGTTG-TGTATGTTACGT 5'& ||| ||. || |||||.| &5' -TCAGGTTTTTAACT--CAATGTA 3' Midn mmu-miR-669j beg:1115 end:1138 pic:3' ACAAACG-TACACTCATATACGT 5'& ||| ||| | |.|.||| &5' TGTGATAAATG-GGATGTGTGC- 3' Midn mmu-miR-671-5p beg:229 end:251 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& |||| ||.||||| || ||| &5' CTCCCACCTCTCCA--GC-TCC- 3' Midn mmu-miR-673-3p beg:482 end:502 pic:3' CCACGTGTCTTGAGTC-GGGGCCT 5'& ||| | ||| ||||||| &5' --TGC-CC---CTCCCACCCCGGA 3' Midn mmu-miR-673-5p beg:1604 end:1622 pic:3' GAGGTTCCTGGTC---TCGACACTC 5'& ||| .||||||.| &5' ------GGAAGAATCCGGCTGTGGG 3' Midn mmu-miR-673-5p beg:1184 end:1206 pic:3' GAGGTT-CCTGGTCTCGACACTC 5'& ||| | |.|| ||||||| &5' -TCCTTTGTTCTAG-GCTGTGA- 3' Midn mmu-miR-677 beg:1636 end:1657 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& |||. |.|||||| &5' ----AAGTCTCCTTTTACTGAA 3' Midn mmu-miR-677 beg:828 end:840 pic:3' AGTCTTCGATTAGTAGTGACTT 5'& || |||||||. &5' -----------TC-TCACTGAG 3' Midn mmu-miR-678 beg:1498 end:1518 pic:3' GGAGGTCAGGA-ACGTGGCTCTG 5'& |||| || .|.||||. &5' ------GTCCACTGGGCTGAGAT 3' Midn mmu-miR-688 beg:1483 end:1498 pic:3' CTTATTCATCAGCGGACGCT 5'& || .|||||.|| &5' --------AGCTGCCTGTGA 3' Midn mmu-miR-696 beg:1680 end:1698 pic:3' GGGTGTCGTTCGTGTGCG 5'& |..||| |.||||| || &5' CTTACA-CGAGCAC-CG- 3' Midn mmu-miR-697 beg:1117 end:1134 pic:3' AGAGGTGTCCTGG---TCCTACAA 5'& ||. .|||||| &5' ---------GATAAATGGGATGT- 3' Midn mmu-miR-698 beg:1387 end:1409 pic:3' TCCCTTCCTTTGCTCTTAC 5'& |||||.||. .| ||.|| &5' AGGGAGGGGGGTGTGAGTG 3' Midn mmu-miR-698 beg:1590 end:1611 pic:3' TCCCT-TCCTTTGC-TCTTAC 5'& .|||. ||| . | ||||| &5' GGGGGCAGGGGGGGAAGAAT- 3' Midn mmu-miR-698 beg:947 end:964 pic:3' TCCCTTCCTTTGCTCTTAC 5'& .|||| ||.|| |||. &5' GGGGATGGGAA-GAGG--- 3' Midn mmu-miR-703 beg:1460 end:1479 pic:3' AAGAAAGGAAGACTTCCAAAA 5'& ||..||.| |.|||||| &5' ----TTTTTTTT-AGGGTTTT 3' Midn mmu-miR-706 beg:1450 end:1482 pic:3' AAAAAACTCT---------GTCCCAAAGAGA 5'& |||||.|. .|||||||.|.| &5' --TTTTGGGGTGTTTTTTTTAGGGTTTTTTT 3' Midn mmu-miR-709 beg:743 end:762 pic:3' AGGAGGACGGAGACGGAGG 5'& .|||.| |||| ||||| &5' -TCTCTTTCCTC--CCTCC 3' Midn mmu-miR-710 beg:435 end:455 pic:3' GAGTTGAGAGGGGT------TCTGAACC 5'& ||||| |||||||| &5' ---------CCCCAGTCTGCAGACTTGG 3' Midn mmu-miR-720 beg:1515 end:1536 pic:3' ACCTCCGGGGT-CGCTCTA 5'& ||||||||.|| || || &5' TGGAGGCCTCAGGCAGGA- 3' Midn mmu-miR-741 beg:815 end:833 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& .||||| |||.|.|| &5' ----TATAGATTT-CATTTTTC- 3' Midn mmu-miR-744 beg:302 end:321 pic:3' ACGACAATCGGGAT--CGGGGCGT 5'& |||||| ||.|.|| &5' -------AGCCCTTCCGCTCTGC- 3' Midn mmu-miR-759 beg:310 end:321 pic:3' CAGTTTTAACAAACGTGAGACG 5'& |.|||||| &5' --------------CGCTCTGC 3' Midn mmu-miR-762 beg:922 end:944 pic:3' CGAGAC-AGGGCCGGGGTCGGGG 5'& |||| ||| || |||||||. &5' -CTCTTCTCCAGG-CCCAGCCT- 3' Midn mmu-miR-763 beg:456 end:478 pic:3' CGGTGACCAAGAAG-GGTCGACC 5'& ||||| |||| |||||||| &5' -CCACT-GTTCCAGGCCAGCTGG 3' Midn mmu-miR-804 beg:1665 end:1689 pic:3' AGGTCCACTC-CTTG-TTGAGTGT 5'& .|| || ||| ||||.||| &5' ---GGGGAAGAGAAAAAACTTACA 3' Midn mmu-miR-872star beg:1530 end:1551 pic:3' TCCTCCGATGACGTTATCAAGT 5'& ||||| | || ||||||| &5' AGGAGCCCACCC--ATAGTTC- 3' Midn mmu-miR-876-3p beg:448 end:463 pic:3' ACTTAATGAAACATTTGGTGAT 5'& |||| ..|||||. &5' ------ACTT----GGCCACTG 3' Midn mmu-miR-877 beg:847 end:864 pic:3' GGGAC-GCGGTAGAGGAGATG 5'& | .||.| ||||||| &5' ----GTTGCTA--TCCTCTA- 3' Midn mmu-miR-877 beg:312 end:333 pic:3' GGGACGCGGT--AGAGGAGATG 5'& |.|||| |.| ||||| | &5' CTCTGC-CTAGCTCTCCCC--- 3' Midn mmu-miR-877 beg:735 end:753 pic:3' GGGACGCGGTAGAGGAGATG 5'& ||| ||||.||||.|. &5' -CCT-CGCCGTCTCTTT--- 3' Midn mmu-miR-877star beg:1388 end:1415 pic:3' ACCCTCCTCCCT--CTTCTCC-TGT 5'& ||||||.||| ||. .|| .|| &5' -GGGAGGGGGGTGTGAGTGGGTGCA 3' Midn mmu-miR-877star beg:1291 end:1317 pic:3' ACCC-TCC-TCC-CTCTTCTCCTGT 5'& ||| .|| .|| |.||||.|||. &5' -GGGTGGGTGGGTGGGAAGGGGAT- 3' Midn mmu-miR-877star beg:42 end:58 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& |||. |.|||||| &5' --------GGGGCAGGAGGAC- 3' Midn mmu-miR-879 beg:1510 end:1528 pic:3' CCGAATCTC-GATATTCGGAGA 5'& ||| .|. |.||||| &5' ------GAGATTGGAGGCCTC- 3' Midn mmu-miR-98 beg:550 end:573 pic:3' TTGTTATGTTGAAT----GATGGAGT 5'& |||.| ||.||||| &5' ------ACAGCCTTCCTCCTGCCTCA 3' Midn mmu-miR-542-5p beg:142 end:154 pic:3' AGCACTGTACTACTAGGGGCTC 5'& | ||||||| &5' ------------GCTCCCCGA- 3' Midn mmu-miR-30c-1star beg:564 end:580 pic:3' CCTCATTTGTTGGG---AGAGGGTC 5'& .||. ||||||| &5' ----------GCCTCAGTCTCCCA- 3' Midn mmu-miR-30c-2star beg:564 end:580 pic:3' TCTCATTTGTCGGA---AGAGGGTC 5'& |||| ||||||| &5' ----------GCCTCAGTCTCCCA- 3' Midn mcmv-miR-m01-2 beg:1537 end:1556 pic:3' TGGCAAGGTTGGGC--TAAGAGAAG 5'& || |||| .|||||||| &5' ------CC-ACCCATAGTTCTCTTC 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Midn RAID00046427 mmu-miR-6369 miRNA MIMAT0025113 Midn mRNA 59090 Prediction 0.1828 Midn RAID00081782 mmu-miR-23b-3p miRNA MIMAT0000125 Midn mRNA 59090 CLIP-seq 0.5483 Midn RAID00085877 mmu-miR-7116-3p miRNA MIMAT0028130 Midn mRNA 59090 Prediction 0.1828 Midn RAID00118365 mmu-miR-6931-5p miRNA MIMAT0027762 Midn mRNA 59090 Prediction 0.1828 Midn RAID00126618 mmu-miR-6352 miRNA MIMAT0025095 Midn mRNA 59090 Prediction 0.1828 Midn RAID00147321 mmu-miR-708-5p miRNA MIMAT0004828 Midn mRNA 59090 Prediction 0.1828 Midn RAID00151603 mmu-miR-149-3p miRNA MIMAT0016990 Midn mRNA 59090 Prediction 0.1828 Midn RAID00198687 mmu-miR-6985-3p miRNA MIMAT0027873 Midn mRNA 59090 Prediction 0.1828 Midn RAID00284531 mmu-miR-7036a-5p miRNA MIMAT0027976 Midn mRNA 59090 Prediction 0.1828 Midn RAID00312283 mmu-miR-221-3p miRNA MIMAT0000669 Midn mRNA 59090 CLIP-seq//Prediction 0.6478 Midn RAID00362302 mmu-miR-294-5p miRNA MIMAT0004574 Midn mRNA 59090 Prediction 0.1828 Midn RAID00388452 mmu-miR-6930-5p miRNA MIMAT0027760 Midn mRNA 59090 Prediction 0.1828 Midn RAID00422578 mmu-miR-669c-3p miRNA MIMAT0017253 Midn mRNA 59090 Prediction 0.1828 Midn RAID00497276 mmu-miR-5124b miRNA MIMAT0025136 Midn mRNA 59090 Prediction 0.1828 Midn RAID00508919 mmu-miR-693-3p miRNA MIMAT0004189 Midn mRNA 59090 Prediction 0.1828 Midn RAID00533083 mmu-miR-211-5p miRNA MIMAT0000668 Midn mRNA 59090 CLIP-seq//Prediction 0.6308 Midn RAID00533478 mmu-miR-20b-5p miRNA MIMAT0003187 Midn mRNA 59090 CLIP-seq//Prediction 0.6478 Midn RAID00580587 mmu-miR-298-5p miRNA MIMAT0000376 Midn mRNA 59090 Prediction 0.1828 Midn RAID00673624 mmu-miR-146a-5p miRNA MIMAT0000158 Midn mRNA 59090 Prediction 0.1828 Midn RAID00680551 mmu-miR-6949-5p miRNA MIMAT0027798 Midn mRNA 59090 Prediction 0.1828 Midn RAID00732567 mmu-miR-222-3p miRNA MIMAT0000670 Midn mRNA 59090 CLIP-seq//Prediction 0.6559 Midn RAID00761699 mmu-miR-6361 miRNA MIMAT0025104 Midn mRNA 59090 Prediction 0.1828 Midn RAID00770679 mmu-miR-6413 miRNA MIMAT0025166 Midn mRNA 59090 Prediction 0.2202 Midn RAID00791231 mmu-miR-93-5p miRNA MIMAT0000540 Midn mRNA 59090 CLIP-seq//Prediction 0.6559 Midn RAID00806962 mmu-miR-24-3p miRNA MIMAT0000219 Midn mRNA 59090 Prediction 0.2202 Midn RAID00807898 mmu-miR-149-5p miRNA MIMAT0000159 Midn mRNA 59090 Prediction 0.2202 Midn RAID00860571 mmu-miR-342-3p miRNA MIMAT0000590 Midn mRNA 59090 CLIP-seq 0.5483 Midn RAID00900081 mmu-miR-186-5p miRNA MIMAT0000215 Midn mRNA 59090 Prediction 0.1828 Midn RAID01019248 mmu-miR-6967-5p miRNA MIMAT0027836 Midn mRNA 59090 Prediction 0.1828 Midn RAID01024616 mmu-miR-6975-5p miRNA MIMAT0027852 Midn mRNA 59090 Prediction 0.1828 Midn RAID01038817 mmu-miR-302a-3p miRNA MIMAT0000380 Midn mRNA 59090 CLIP-seq//Prediction 0.6308 Midn RAID01041569 mmu-miR-698-5p miRNA MIMAT0022930 Midn mRNA 59090 Prediction 0.1828 Midn RAID01260353 mmu-miR-8108 miRNA MIMAT0031413 Midn mRNA 59090 Prediction 0.1828 Midn RAID01291889 mmu-miR-92a-2-5p miRNA MIMAT0004635 Midn mRNA 59090 Prediction 0.1828 Midn RAID01336842 mmu-miR-30a-3p miRNA MIMAT0000129 Midn mRNA 59090 Prediction 0.1828 Midn RAID01340685 mmu-miR-294-3p miRNA MIMAT0000372 Midn mRNA 59090 CLIP-seq//Prediction 0.6308 Midn RAID01348367 mmu-miR-6344 miRNA MIMAT0025087 Midn mRNA 59090 Prediction 0.1828 Midn RAID01432350 mmu-miR-7045-3p miRNA MIMAT0027995 Midn mRNA 59090 Prediction 0.1828 Midn RAID01449070 mmu-miR-20a-5p miRNA MIMAT0000529 Midn mRNA 59090 CLIP-seq//Prediction 0.6478 Midn RAID01505189 mmu-miR-216a-5p miRNA MIMAT0000662 Midn mRNA 59090 Prediction 0.2202 Midn RAID01627434 mmu-miR-204-5p miRNA MIMAT0000237 Midn mRNA 59090 CLIP-seq//Prediction 0.6308 Midn RAID01644266 mmu-miR-29b-3p miRNA MIMAT0000127 Midn mRNA 59090 Prediction 0.1828 Midn RAID01657397 mmu-miR-7056-5p miRNA MIMAT0028016 Midn mRNA 59090 Prediction 0.1828 Midn RAID01677391 mmu-miR-203-3p miRNA MIMAT0000236 Midn mRNA 59090 CLIP-seq 0.5483 Midn RAID01755943 mmu-miR-379-5p miRNA MIMAT0000743 Midn mRNA 59090 Prediction 0.1828 Midn RAID01756131 mmu-miR-6973b-5p miRNA MIMAT0027908 Midn mRNA 59090 Prediction 0.1828 Midn RAID01791713 mmu-miR-7084-5p miRNA MIMAT0028074 Midn mRNA 59090 Prediction 0.1828 Midn RAID01824252 mmu-miR-6929-5p miRNA MIMAT0027758 Midn mRNA 59090 Prediction 0.1828 Midn RAID01962267 mmu-miR-23a-3p miRNA MIMAT0000532 Midn mRNA 59090 CLIP-seq 0.5483 Midn RAID01981645 mmu-miR-128-3p miRNA MIMAT0000140 Midn mRNA 59090 Prediction 0.1828 Midn RAID02030336 mmu-miR-1953 miRNA MIMAT0009424 Midn mRNA 59090 Prediction 0.1828 Midn RAID02035201 mmu-miR-106a-5p miRNA MIMAT0000385 Midn mRNA 59090 CLIP-seq//Prediction 0.6478 Midn RAID02074946 mmu-miR-590-3p miRNA MIMAT0004896 Midn mRNA 59090 Prediction 0.1828 Midn RAID02108709 mmu-miR-7082-3p miRNA MIMAT0028071 Midn mRNA 59090 Prediction 0.1828 Midn RAID02215762 mmu-miR-155-5p miRNA MIMAT0000165 Midn mRNA 59090 Prediction 0.1828 Midn RAID02225496 mmu-miR-98-5p miRNA MIMAT0000545 Midn mRNA 59090 Prediction 0.1828 Midn RAID02236713 mmu-miR-652-5p miRNA MIMAT0017260 Midn mRNA 59090 Prediction 0.1828 Midn RAID02267388 mmu-miR-1943-5p miRNA MIMAT0009408 Midn mRNA 59090 Prediction 0.1828 Midn RAID02281227 mmu-miR-450b-3p miRNA MIMAT0003512 Midn mRNA 59090 Prediction 0.1828 Midn RAID02319117 mmu-miR-6410 miRNA MIMAT0025163 Midn mRNA 59090 Prediction 0.1828 Midn RAID02345179 mmu-miR-1897-5p miRNA MIMAT0007864 Midn mRNA 59090 CLIP-seq 0.5483 Midn RAID02393946 mmu-miR-6935-5p miRNA MIMAT0027770 Midn mRNA 59090 Prediction 0.1828 Midn RAID02444712 mmu-miR-6951-3p miRNA MIMAT0027803 Midn mRNA 59090 Prediction 0.1828 Midn RAID02451672 mmu-miR-295-3p miRNA MIMAT0000373 Midn mRNA 59090 CLIP-seq//Prediction 0.6308 Midn RAID02476196 mmu-let-7i-5p miRNA MIMAT0000122 Midn mRNA 59090 Prediction 0.1828 Midn RAID02544846 mmu-miR-3057-5p miRNA MIMAT0014822 Midn mRNA 59090 Prediction 0.1828 Midn RAID02548485 mmu-miR-302b-3p miRNA MIMAT0003374 Midn mRNA 59090 CLIP-seq//Prediction 0.6308 Midn RAID02588195 mmu-miR-291a-3p miRNA MIMAT0000368 Midn mRNA 59090 CLIP-seq//Prediction 0.6308 Midn RAID02630271 mmu-miR-3083-5p miRNA MIMAT0014874 Midn mRNA 59090 Prediction 0.1828 Midn RAID02657833 mmu-miR-17-5p miRNA MIMAT0000649 Midn mRNA 59090 CLIP-seq//Prediction 0.6478 Midn RAID02676065 mmu-miR-132-5p miRNA MIMAT0016984 Midn mRNA 59090 Prediction 0.1828 Midn RAID02680841 mmu-miR-384-3p miRNA MIMAT0001076 Midn mRNA 59090 Prediction 0.1828 Midn RAID02704507 mmu-miR-1928 miRNA MIMAT0009391 Midn mRNA 59090 Prediction 0.1828 Midn RAID02783438 mmu-miR-343 miRNA MIMAT0004868 Midn mRNA 59090 CLIP-seq 0.5483 Midn RAID02794924 mmu-miR-146b-5p miRNA MIMAT0003475 Midn mRNA 59090 Prediction 0.1828 Midn RAID02879549 mmu-miR-30d-3p miRNA MIMAT0017011 Midn mRNA 59090 Prediction 0.1828 Midn RAID02908338 mmu-miR-709 miRNA MIMAT0003499 Midn mRNA 59090 Prediction 0.1828 Midn RAID02910843 mmu-miR-7230-5p miRNA MIMAT0028428 Midn mRNA 59090 Prediction 0.1828 Midn RAID02932668 mmu-let-7g-5p miRNA MIMAT0000121 Midn mRNA 59090 Prediction 0.1828 Midn RAID02939614 mmu-miR-7212-3p miRNA MIMAT0028393 Midn mRNA 59090 Prediction 0.1828 Midn RAID03012447 mmu-miR-331-5p miRNA MIMAT0004643 Midn mRNA 59090 Prediction 0.1828 Midn RAID03030776 mmu-miR-301a-3p miRNA MIMAT0000379 Midn mRNA 59090 Prediction 0.1828 Midn RAID03122128 mmu-miR-7024-5p miRNA MIMAT0027952 Midn mRNA 59090 Prediction 0.1828 Midn RAID03149710 mmu-miR-7016-5p miRNA MIMAT0027936 Midn mRNA 59090 Prediction 0.1828 Midn RAID03172689 mmu-miR-106b-5p miRNA MIMAT0000386 Midn mRNA 59090 CLIP-seq//Prediction 0.6478 Midn RAID03173660 mmu-miR-466l-3p miRNA MIMAT0005830 Midn mRNA 59090 Prediction 0.1828 Midn RAID03218831 mmu-miR-673-5p miRNA MIMAT0003739 Midn mRNA 59090 Prediction 0.1828 Midn RAID03227869 mmu-miR-30e-3p miRNA MIMAT0000249 Midn mRNA 59090 Prediction 0.1828 Midn RAID03250107 mmu-miR-292a-3p miRNA MIMAT0000370 Midn mRNA 59090 Prediction 0.1828 Midn RAID03291678 mmu-miR-450a-1-3p miRNA MIMAT0017182 Midn mRNA 59090 Prediction 0.1828 Midn RAID03304817 mmu-miR-6383 miRNA MIMAT0025129 Midn mRNA 59090 Prediction 0.1828 Midn RAID03306779 mmu-miR-290a-3p miRNA MIMAT0004572 Midn mRNA 59090 Prediction 0.1828 Midn RAID03308449 mmu-miR-3093-5p miRNA MIMAT0014907 Midn mRNA 59090 CLIP-seq 0.5483 Midn RAID03355740 mmu-miR-8100 miRNA MIMAT0031403 Midn mRNA 59090 Prediction 0.1828 Midn RAID03390336 mmu-miR-302d-3p miRNA MIMAT0003377 Midn mRNA 59090 CLIP-seq//Prediction 0.6308 Midn RAID03390958 mmu-miR-329-3p miRNA MIMAT0000567 Midn mRNA 59090 Prediction 0.1828 Midn RAID03428755 mmu-miR-7023-5p miRNA MIMAT0027950 Midn mRNA 59090 Prediction 0.1828 Midn RAID03549112 mmu-miR-501-3p miRNA MIMAT0003509 Midn mRNA 59090 CLIP-seq 0.5483 Midn RAID03567871 mmu-miR-7119-5p miRNA MIMAT0028135 Midn mRNA 59090 Prediction 0.1828 Midn RAID03610290 mmu-miR-6941-5p miRNA MIMAT0027782 Midn mRNA 59090 Prediction 0.1828 Midn RAID03653741 mmu-miR-301b-3p miRNA MIMAT0004186 Midn mRNA 59090 Prediction 0.1828 Midn RAID03697685 mmu-miR-3061-5p miRNA MIMAT0014828 Midn mRNA 59090 Prediction 0.1828 Midn RAID03723615 mmu-miR-7006-5p miRNA MIMAT0027916 Midn mRNA 59090 Prediction 0.1828 Midn RAID03776136 mmu-miR-503-5p miRNA MIMAT0003188 Midn mRNA 59090 Prediction 0.1828 Midn RAID03779465 mmu-miR-3473f miRNA MIMAT0031390 Midn mRNA 59090 Prediction 0.1828 Midn RAID03817447 mmu-miR-500-3p miRNA MIMAT0003507 Midn mRNA 59090 CLIP-seq 0.5483 Midn RAID03841012 mmu-miR-7118-5p miRNA MIMAT0028133 Midn mRNA 59090 Prediction 0.1828 Midn RAID04022750 mmu-miR-7005-5p miRNA MIMAT0027914 Midn mRNA 59090 Prediction 0.1828