DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Usp35 ATTTA 364-885 1155-1159

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004636 mmu-miR-93* 244144 Usp35 gcccuucacgaucGAGUCGUCa |||||||| ------------uCUCAGCAGa 2 10 1 10 [mm9:7:104467969-104467978:-] 0.5287 145 7 -14.57 -0.9220 MIMAT0003891 mmu-miR-770-3p 244144 Usp35 ggucgaggUGCAGUCCGGGUGc |: | |||||||| gggaagugAUCUAAGGCCCACu 2 15 96 117 [mm9:7:104467862-104467883:-] 0.5131 150 7 -17.13 -0.6665 MIMAT0003898 mmu-miR-760 244144 Usp35 aggggugucuGGGUCUCGGc ::||||||| caggguacccUUCAGAGCCu 2 11 146 165 [mm9:7:104467814-104467833:-] 0.4974 142 7 -18.14 -0.1443 MIMAT0003449 mmu-miR-488* 244144 Usp35 aacucucacgaUAAUAGACCc | ||||||| ugucucuacaaAAUAUCUGGg 2 11 211 231 [mm9:7:104467748-104467768:-] 0.5002 142 7 -13.63 -0.6987 MIMAT0003508 mmu-miR-501-5p 244144 Usp35 aaagugggucccUGUUUCCUAa | ||||||| cagacaucuuuuAAAAAGGAUu 2 11 251 272 [mm9:7:104467707-104467728:-] 0.5002 142 7 -14.70 -1.1288 MIMAT0004848 mmu-miR-883a-5p 244144 Usp35 cauugacgaugaagAGAGUCGu ||||||| --------------UCUCAGCa 2 9 1 8 [mm9:7:104467971-104467978:-] 0.5287 140 7 -12.45 -0.8608 MIMAT0004865 mmu-miR-297c 244144 Usp35 uguACAUGUACGUGUGUAU-GUa |||:::| | ||||| || gcuUGUGUGUUGAGACAUAGCAg 2 20 231 253 [mm9:7:104467726-104467748:-] 0.5002 123 0 -10.29 -0.7369 MIMAT0004898 mmu-miR-654-3p 244144 Usp35 uucCACUAC-CAG--UCGUCUGUAu ||| || | | ||||||||| uguGUGUUGAGACAUAGCAGACAUc 2 20 234 258 [mm9:7:104467721-104467745:-] 0.5002 157 7 -18.07 -0.2779 MIMAT0007874 mmu-miR-1904 244144 Usp35 ggagGGAGGUCUCCUCGUCUUg :|| ||| |||||||| ----UCU-CAGCAGAGCAGAAg 2 19 1 17 [mm9:7:104467962-104467978:-] 0.5287 156 7 -18.14 -0.9908 MIMAT0009417 mmu-miR-1950 244144 Usp35 acugguaUAGGAAUCUACGUCu || : :||||||| aguugggAUGUGGGGAUGCAGg 2 16 16 37 [mm9:7:104467942-104467963:-] 0.5287 143 7 -15.73 -0.3566 MIMAT0014853 mmu-miR-3072 244144 Usp35 ucUUCCGAAGGACCUCCCC-CGu :||| | | |||||||| || agGAGGAUCCGUGGAGGGGUGCa 2 21 125 147 [mm9:7:104467832-104467854:-] 0.4974 136 0 -35.78 -0.1176 MIMAT0000139 mmu-miR-127 244144 Usp35 ucgguucGAGUCUGCCUAGGCu || ||: ||||||| acugauaCUGAGGAGGAUCCGu 2 16 115 136 [mm9:7:104467843-104467864:-] 0.4974 155 7 -21.59 -0.2304 MIMAT0000555 mmu-miR-324-5p 244144 Usp35 ugugguuacgggauCCCCUACGc |||||||| agaaguugggauguGGGGAUGCa 2 10 13 35 [mm9:7:104467944-104467966:-] 0.5287 145 7 -16.80 -0.9633 MIMAT0000590 mmu-miR-342-3p 244144 Usp35 ugcccACGCUAAAGACAC-ACUCu || |: || |||| |||| auaucUG-GGCUUGUGUGUUGAGa 2 19 223 245 [mm9:7:104467734-104467756:-] 0.5002 120 0 -16.38 -0.4106 MIMAT0000597 mmu-miR-346 244144 Usp35 ucuccguccgugagcCCGUCUGu ||||||| uucaccccacagcauGGCAGACc 2 9 176 198 [mm9:7:104467781-104467803:-] 0.4988 140 7 -16.45 -0.4400

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G064495 Usp35 Mus musculus 244144

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Usp35 RAID00475188 mmu-miR-28a-5p miRNA MIMAT0000653 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID00533455 mmu-miR-3473d miRNA MIMAT0020632 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID00684774 mmu-miR-324-5p miRNA MIMAT0000555 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID00727581 mmu-miR-7661-5p miRNA MIMAT0029828 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID00996080 mmu-miR-127-3p miRNA MIMAT0000139 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID01189807 mmu-miR-6953-5p miRNA MIMAT0027806 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID01229670 mmu-miR-760-5p miRNA MIMAT0017245 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID01263314 mmu-miR-125b-5p miRNA MIMAT0000136 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID01296516 mmu-miR-6921-5p miRNA MIMAT0027742 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID01345155 mmu-miR-346-5p miRNA MIMAT0000597 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID01572826 mmu-miR-7655-5p miRNA MIMAT0029816 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID01773351 mmu-miR-1947-3p miRNA MIMAT0017343 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID01838080 mmu-miR-3154 miRNA MIMAT0035714 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID02257613 mmu-miR-761 miRNA MIMAT0003893 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID02305709 mmu-miR-7028-3p miRNA MIMAT0027961 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID02392464 mmu-miR-709 miRNA MIMAT0003499 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID02518519 mmu-miR-423-5p miRNA MIMAT0004825 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID02751976 mmu-miR-6367 miRNA MIMAT0025111 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID02840767 mmu-miR-351-5p miRNA MIMAT0000609 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID02947471 mmu-miR-7033-3p miRNA MIMAT0027971 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID02955354 mmu-miR-708-5p miRNA MIMAT0004828 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID02994567 mmu-miR-214-3p miRNA MIMAT0000661 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID03000393 mmu-miR-342-3p miRNA MIMAT0000590 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID03094111 mmu-miR-7086-5p miRNA MIMAT0028078 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID03314331 mmu-miR-674-5p miRNA MIMAT0003740 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID03383914 mmu-miR-125a-5p miRNA MIMAT0000135 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID03465822 mmu-miR-149-3p miRNA MIMAT0016990 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID03547427 mmu-miR-7089-3p miRNA MIMAT0028085 Usp35 mRNA 244144 Prediction 0.1828 Usp35 RAID04050656 mmu-miR-6394 miRNA MIMAT0025144 Usp35 mRNA 244144 Prediction 0.1828