DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Skp1a; Skp1 ATTTA 425-916 1481-1485;1638-1642

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT013332 mmu-miR-30e-5p Mus musculus Skp1a 21402 Mus musculus Sequencing Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000129 mmu-miR-30a* 21402 Skp1a cgacgUUUGUAGGCUGACUUUc ||| :| : :|||||| uuaagAAAAGUAU-GCUGAAAu 2 18 335 355 [mm9:11:52059857-52059877:+] 0.6178 131 6 -6.61 -0.2075 MIMAT0000143 mmu-miR-9* 21402 Skp1a ugAAAGCCAAUAGA-UCGAAAUa |||: | ||| ||||||: uuUUUUAAUCUUCUCAGCUUUGa 2 21 527 549 [mm9:11:52060049-52060071:+] 0.5651 139 0 -9.36 -0.1411 MIMAT0000143 mmu-miR-9* 21402 Skp1a ugaaagccAAUAGAUCGAAAua ||:| ||||||| ucaacaauUUGU-UAGCUUUuc 3 15 611 631 [mm9:11:52060133-52060153:+] 0.5651 132 0 -7.99 -0.2097 MIMAT0000152 mmu-miR-140* 21402 Skp1a ggcaccaAGAUGGGAC-ACCAu ||||: ||| |||| uccaaccUCUAUGCUGCUGGUa 2 15 434 455 [mm9:11:52059956-52059977:+] 0.5816 122 0 -18.09 -0.3993 MIMAT0000249 mmu-miR-30e* 21402 Skp1a cgacaUUUGUAGGCUGACUUUc ||| :| : :|||||| uuaagAAAAGUAU-GCUGAAAu 2 18 335 355 [mm9:11:52059857-52059877:+] 0.6178 131 6 -6.71 -0.2075 MIMAT0000370 mmu-miR-292-3p 21402 Skp1a ugUGAGUUUUGGACC----GCCGU-GAAa | ||::|| |||| |||| ||| ugAAUCGGAAACUGGAAUAGGGCAGCUUg 2 23 384 412 [mm9:11:52059906-52059934:+] 0.6045 121 0 -18.05 -0.6847 MIMAT0000377 mmu-miR-299* 21402 Skp1a uacauacaccCUGCCAUUUGgu |:: |||||| uaguacaauaGGUAGUAAACag 3 13 802 823 [mm9:11:52060324-52060345:+] 0.5870 124 0 -8.90 -0.1233 MIMAT0000378 mmu-miR-300 21402 Skp1a cuUCUCUCGAACGGGAACGUAu :|||| : ||||||| guGGAGAAACACUACUUGCAUg 2 21 691 712 [mm9:11:52060213-52060234:+] 0.5944 144 7 -15.83 -1.0363 MIMAT0004618 mmu-miR-196a* 21402 Skp1a aguccGUC-AAA---GAACAACGGcu ||| ||| : ||||||| cuucuCAGCUUUGAAUAUGUUGCCua 3 18 536 561 [mm9:11:52060058-52060083:+] 0.5651 127 0 -11.70 -0.1255 MIMAT0004626 mmu-miR-18a* 21402 Skp1a guCUUCCUCGUGAAUCCCGUCa ||| | | |||||||| cgGAAACUGGA-AUAGGGCAGc 2 21 389 409 [mm9:11:52059911-52059931:+] 0.5981 146 7 -18.79 -0.7655 MIMAT0004640 mmu-miR-325 21402 Skp1a aacuaUCCUCCACGAGUUAUUu || | | :||||||| gugcaAGAUGCUUUUCAAUAAa 2 18 777 798 [mm9:11:52060299-52060320:+] 0.5944 149 7 -9.25 -1.2093 MIMAT0000569 mmu-miR-330* 21402 Skp1a agAGACGUCCGGGACACGAAACg |:| | ::|| |||||| uuUUUUAAUCUUCUCAGCUUUGa 2 22 527 549 [mm9:11:52060049-52060071:+] 0.5651 121 6 -12.16 -0.1623 MIMAT0004661 mmu-miR-28* 21402 Skp1a aggUCGUCGAGUGUUA-GAUCAc :|: |:|| ||| ||||| aagGGUUGUUCCAAAUGCUAGUu 2 20 29 51 [mm9:11:52059551-52059573:+] 0.7475 123 0 -12.08 -0.8967 MIMAT0004666 mmu-miR-33* 21402 Skp1a cacUA-CGUGACACCUUUGUAac || | |:| |||||| gaaAUAGAAUUAACAAAACAUga 3 20 351 373 [mm9:11:52059873-52059895:+] 0.6110 122 0 -4.50 -0.1753 MIMAT0004666 mmu-miR-33* 21402 Skp1a cacuacgugacaccuUUGUAAc |||||| uuaauuuaaccuuuuAACAUUa 2 8 719 740 [mm9:11:52060241-52060262:+] 0.5944 120 6 -2.88 -0.2357 MIMAT0004670 mmu-miR-7a* 21402 Skp1a auaccgucugacacUAAACAAc ||||||| acuguaacucaacaAUUUGUUa 2 9 603 624 [mm9:11:52060125-52060146:+] 0.5651 140 7 -5.67 -1.0598 MIMAT0001090 mmu-miR-409-3p 21402 Skp1a uccccAAGUGGCUCGUUGUAAg || ||| :|||||| uuaauUUAACCUUUUAACAUUa 2 18 719 740 [mm9:11:52060241-52060262:+] 0.5944 137 6 -8.58 -0.2273 MIMAT0003190 mmu-miR-291b-3p 21402 Skp1a uguuuGUUUUAC---CUACGUGAaa | ||||| | |||||| uuguuCCAAAUGCUAGUUGCACUgc 3 18 34 58 [mm9:11:52059556-52059580:+] 0.7475 132 0 -8.96 -0.1068 MIMAT0003735 mmu-miR-672 21402 Skp1a aguguguguCAUGUGGUUGGAGu || : |||||||| cauguggguGUCUUCCAACCUCu 2 15 421 443 [mm9:11:52059943-52059965:+] 0.5981 150 7 -19.09 -0.3181 MIMAT0003897 mmu-miR-759 21402 Skp1a caguuuuaacaaacGUGAGACg :|||||| ccuuuuccccccauUACUCUGa 2 9 177 198 [mm9:11:52059699-52059720:+] 0.5974 124 6 -9.81 -0.1095 MIMAT0003472 mmu-miR-693-5p 21402 Skp1a cuuuugaaAGCCU--ACACCGAc || || ||||||| aguccagaUCAGACCUGUGGCUg 2 14 130 152 [mm9:11:52059652-52059674:+] 0.5974 144 7 -15.74 -0.1747 MIMAT0003474 mmu-miR-694 21402 Skp1a gaaguccguuguAAAAGUc |||||| caauuuguuagcUUUUCAa 2 8 615 633 [mm9:11:52060137-52060155:+] 0.5651 120 6 -5.62 -0.1986 MIMAT0003474 mmu-miR-694 21402 Skp1a gaaguccguuguAAAAGUc |||||| agugcaagaugcUUUUCAa 2 8 776 794 [mm9:11:52060298-52060316:+] 0.5944 120 6 -6.63 -0.1041 MIMAT0003476 mmu-miR-669b 21402 Skp1a ugUACG--UGUA-CGUG--UGUUUUGa |||| | || | |: ||||||| guAUGCUGAAAUAGAAUUAACAAAACa 2 21 344 370 [mm9:11:52059866-52059892:+] 0.6110 145 7 -10.58 -1.2806 MIMAT0003479 mmu-miR-669c 21402 Skp1a ugUGU-GUAGGUG-UGUGUUGAua ||| ::| |: | |||||| ugACAUUGUAAAUAAAACAACUua 3 21 314 337 [mm9:11:52059836-52059859:+] 0.6178 126 0 -9.48 -0.2403 MIMAT0004827 mmu-miR-297b-3p 21402 Skp1a auacccaUACACACAUACA-UAu ||||| |||||| || uuacuucAUGUG-GUAUGUCAUc 2 16 647 668 [mm9:11:52060169-52060190:+] 0.5797 125 0 -11.97 -0.9390 MIMAT0003498 mmu-miR-708* 21402 Skp1a gaUC-UUCGAGUGUCAGAUCAAc || :| :|| ||||||| aaAGUGAUUUCUGCCUCUAGUUc 2 21 257 279 [mm9:11:52059779-52059801:+] 0.6246 143 7 -8.99 -0.3602 MIMAT0003499 mmu-miR-709 21402 Skp1a aggaggAC-GGAGACGGAGg || ::|||||||| guaaagUGAUUUCUGCCUCu 2 14 255 274 [mm9:11:52059777-52059796:+] 0.6246 148 7 -18.78 -1.1651 MIMAT0004210 mmu-miR-804 21402 Skp1a aggUC-CACUCCUUGUUGAGUgu || || || | |||||| uaaAGUGUAUGGUAAAACUCAga 3 20 739 761 [mm9:11:52060261-52060283:+] 0.5944 134 0 -14.27 -0.1823 MIMAT0004841 mmu-miR-871 21402 Skp1a guacugaccGUGAUUAGACUUAu ||:|| ||||||| uuuucccccCAUUACUCUGAAUa 2 15 179 201 [mm9:11:52059701-52059723:+] 0.5974 158 7 -14.29 -0.9068 MIMAT0004848 mmu-miR-883a-5p 21402 Skp1a cauuGACGAUGAAGAGAGUCGu :| :|| | :||||||| uuuuUUUUUAAUCUUCUCAGCu 2 19 524 545 [mm9:11:52060046-52060067:+] 0.5651 154 7 -12.39 -1.2110 MIMAT0004850 mmu-miR-883b-5p 21402 Skp1a acuGACGAUGGGUAAGAGUCau :| :|| :| ||||||| uuuUUUUUAAUC-UUCUCAGcu 3 20 525 545 [mm9:11:52060047-52060067:+] 0.5651 133 0 -10.80 -0.1490 MIMAT0004863 mmu-miR-220 21402 Skp1a uucacAGACUGUGACACC-ACc || ||| |||||| || ccagaUCAGAC-CUGUGGCUGa 2 17 133 153 [mm9:11:52059655-52059675:+] 0.5974 122 0 -16.37 -0.4728 MIMAT0004864 mmu-miR-297a* 21402 Skp1a auacccaUACACACAUACA-UAu ||||| |||||| || uuacuucAUGUG-GUAUGUCAUc 2 16 647 668 [mm9:11:52060169-52060190:+] 0.5797 125 0 -11.97 -0.9390 MIMAT0004866 mmu-miR-297c* 21402 Skp1a auacccaUACACACAUACA-UAu ||||| |||||| || uuacuucAUGUG-GUAUGUCAUc 2 16 647 668 [mm9:11:52060169-52060190:+] 0.5797 125 0 -11.97 -0.9390 MIMAT0004882 mmu-miR-466f-3p 21402 Skp1a cacacauacacacaCACAUAc |||||| cuuuuaacauuaaaGUGUAUg 2 8 729 749 [mm9:11:52060251-52060271:+] 0.5944 120 6 -9.87 -0.1072 MIMAT0004934 mmu-miR-872 21402 Skp1a ggacUUGAUUGUUCAUUGGAa ||:|||: |||||| uaaaAAUUAAU--UUAACCUu 2 18 713 731 [mm9:11:52060235-52060253:+] 0.5944 122 6 -10.69 -0.2466 MIMAT0005293 mmu-miR-467e 21402 Skp1a uguauauguacgagUGUGAAUa ||||||| uucaauuaaaaaagACACUUAc 2 9 629 650 [mm9:11:52060151-52060172:+] 0.5651 140 7 -7.58 -0.7926 MIMAT0005835 mmu-miR-1-2-as 21402 Skp1a accUUACAUU-UCUUCAUACau || ||| | ||||||| aacAACUUAAGAAAAGUAUGcu 3 19 329 350 [mm9:11:52059851-52059872:+] 0.6178 137 0 -7.78 -0.1629 MIMAT0005842 mmu-miR-669h-3p 21402 Skp1a acACGUACACACAUAUAC-GUAu | |||||| :|||| ||| acUUCAUGUG---GUAUGUCAUc 2 21 649 668 [mm9:11:52060171-52060190:+] 0.5797 120 0 -16.55 -0.9326 MIMAT0005846 mmu-miR-467f 21402 Skp1a acauccacacacaCACAUAUa ||||||: uuuuaacauuaaaGUGUAUGg 2 9 730 750 [mm9:11:52060252-52060272:+] 0.5944 124 0 -7.57 -0.1048 MIMAT0005854 mmu-miR-467g 21402 Skp1a uauauacACACACAUACA-UAu |||| |||||| || uacuucaUGUG-GUAUGUCAUc 2 15 648 668 [mm9:11:52060170-52060190:+] 0.5797 120 0 -10.78 -0.9326 MIMAT0005855 mmu-miR-467h 21402 Skp1a uguauauguacgUGUGUGAAUa | ||||||| uucaauuaaaaaAGACACUUAc 2 11 629 650 [mm9:11:52060151-52060172:+] 0.5651 142 7 -7.73 -0.7926 MIMAT0005860 mmu-miR-1199 21402 Skp1a ggcgcgcuggcccUGAGUCu |||||| aguguaugguaaaACUCAGa 2 8 742 761 [mm9:11:52060264-52060283:+] 0.5944 120 6 -16.73 -0.2284 MIMAT0007874 mmu-miR-1904 21402 Skp1a ggAGGGAGGUCUCCUCGUCUUg |::||:| | |||||||| agUUUCUUCUG-UGAGCAGAAg 2 21 153 173 [mm9:11:52059675-52059695:+] 0.5974 158 7 -20.46 -0.1668 MIMAT0007876 mmu-miR-1907 21402 Skp1a ugGAGGUCUAGGAGACGACGAg :|||| :|| ||||||| ucUUCCAACCUCUAUGCUGCUg 2 21 431 452 [mm9:11:52059953-52059974:+] 0.5816 160 7 -24.48 -0.5352 MIMAT0009392 mmu-miR-1929 21402 Skp1a gaGACGAGA--UAUUUCA-GGAUCUu | |||:| ||| : | |||||| cuCAGCUUUGAAUAUGUUGCCUAGAg 2 22 539 564 [mm9:11:52060061-52060086:+] 0.5651 124 6 -20.39 -1.1209 MIMAT0009406 mmu-miR-1941-3p 21402 Skp1a uacCCUCUAUGAC-GAU-UCUAc | | ||::|| ||| |||| uuuGAAUAUGUUGCCUAGAGAUu 2 19 545 567 [mm9:11:52060067-52060089:+] 0.5651 121 0 -8.99 -0.6528 MIMAT0009415 mmu-miR-1948 21402 Skp1a gacAUGCUCACGAGACGGAUUu | :|| | : :||||||: agcUUUGAAUAUGUUGCCUAGa 2 20 542 563 [mm9:11:52060064-52060085:+] 0.5651 135 0 -15.08 -0.1252 MIMAT0009421 mmu-miR-669o 21402 Skp1a uguauuuguacgugugUGUUGAu |||||| ugacauuguaaauaaaACAACUu 2 8 314 336 [mm9:11:52059836-52059858:+] 0.6246 120 6 -11.52 -0.1904 MIMAT0009423 mmu-miR-1952 21402 Skp1a gucuuccucCCACCUCu ||||||| uuguucccaGGUGGAGa 2 9 681 697 [mm9:11:52060203-52060219:+] 0.5944 140 7 -15.47 -1.0986 MIMAT0009424 mmu-miR-1953 21402 Skp1a guCUUCG-GACUCUUGAAAGGGu | :|| :| |::||||||| aaGUGGCAUUUUGGGCUUUCCCu 2 21 228 250 [mm9:11:52059750-52059772:+] 0.6338 151 7 -20.45 -0.2632 MIMAT0009433 mmu-miR-1960 21402 Skp1a ucGGGAGAAGAUUGUCGUGACc || | |||:: |||||| uuCCAAAUGCUAGUUGCACUGc 2 21 37 58 [mm9:11:52059559-52059580:+] 0.7475 128 6 -16.61 -0.1291 MIMAT0009446 mmu-miR-1971 21402 Skp1a agAGUCGGGUCGGAAAug |||| : ||||||| cuUCAG-UGAGCCUUUca 3 17 293 309 [mm9:11:52059815-52059831:+] 0.6246 134 0 -15.94 -0.1290 MIMAT0009458 mmu-miR-1981 21402 Skp1a cggUGCAGAUUCGGGUCGGAAAug || || || : ||||||| uuaACUUC--AG-UGAGCCUUUca 3 22 289 309 [mm9:11:52059811-52059831:+] 0.6246 128 0 -11.92 -0.1316 MIMAT0011212 mmu-miR-2136 21402 Skp1a guguaGAGUCAGUUG-UGGGUc :|:|||: || ||||| agagaUUUAGUUUACUACCCAg 2 17 561 582 [mm9:11:52060083-52060104:+] 0.5651 124 0 -19.57 -1.0455 MIMAT0015640 mmu-miR-3470a 21402 Skp1a ggUCGGACCA--GAUGUUUCACu | ||| | | :|||||| uuAACCUUUUAACAUUAAAGUGu 2 20 724 746 [mm9:11:52060246-52060268:+] 0.5944 126 6 -10.78 -0.1179 MIMAT0015646 mmu-miR-3474 21402 Skp1a cuuaGGUGCAGAGGAGGGUCCc :||: :| :||||||| uuuaUCAUCAUUGUUCCCAGGu 2 19 671 692 [mm9:11:52060193-52060214:+] 0.5944 150 7 -19.67 -0.8255 MIMAT0000124 mmu-miR-15b 21402 Skp1a acauUUGGUACUACACGACGAu |||| | | ||||||| uuccAACC-U-CUAUGCUGCUg 2 19 433 452 [mm9:11:52059955-52059974:+] 0.5816 146 7 -15.40 -0.5352 MIMAT0000128 mmu-miR-30a 21402 Skp1a gaaGGUCAGC-UCCU---ACAAAUGu |:|||:| | : ||||||: augCUAGUUGCACUGCUCUGUUUAUa 2 20 43 68 [mm9:11:52059565-52059590:+] 0.7475 125 0 -14.40 -0.2211 MIMAT0000130 mmu-miR-30b 21402 Skp1a ucgacucacauccuACAAAUGu ||||||: uaguugcacugcucUGUUUAUa 2 9 47 68 [mm9:11:52059569-52059590:+] 0.7475 124 0 -10.16 -0.2171 MIMAT0000141 mmu-miR-130a 21402 Skp1a uacGGGAAAAUUGU-AACGUGAc :|| |: :| ||||||| uguUCCAAAUGCUAGUUGCACUg 2 20 35 57 [mm9:11:52059557-52059579:+] 0.7475 142 7 -16.95 -0.8754 MIMAT0000155 mmu-miR-142-3p 21402 Skp1a agguauUUCAUC-CUUUGUGAUGu |:||:| |||||||||| guucccAGGUGGAGAAACACUACu 2 18 683 706 [mm9:11:52060205-52060228:+] 0.5944 168 7 -23.62 -0.6761 MIMAT0000157 mmu-miR-145 21402 Skp1a ucccUAAGGAC---CCUUUUGACCUg :||| || |:|||||||| acuuGUUCAUGAAUCGGAAACUGGAa 2 20 375 400 [mm9:11:52059897-52059922:+] 0.6045 154 7 -16.21 -0.8615 MIMAT0000162 mmu-miR-152 21402 Skp1a ggUUCAAGA-CAGUACGUGACu || | || || ||||||| ccAAAUGCUAGU--UGCACUGc 2 20 39 58 [mm9:11:52059561-52059580:+] 0.7475 147 7 -15.52 -1.0369 MIMAT0000162 mmu-miR-152 21402 Skp1a gguUCAAGACA-GUAC-GUGACu | | |||| | || ||||| ---ACUGCUGUGCCUGUCACUGu 2 19 1 20 [mm9:11:52059523-52059542:+] 0.7475 121 0 -13.74 -0.8185 MIMAT0000164 mmu-miR-154 21402 Skp1a gcuuccguugugccuAUUGGAu |||||| auguaaaaauuaauuUAACCUu 2 8 710 731 [mm9:11:52060232-52060253:+] 0.5944 120 6 -7.08 -0.2735 MIMAT0000215 mmu-miR-186 21402 Skp1a ucggguuuuccucuuAAGAAAc |||||| cugaggccuuguuuuUUCUUUu 2 8 489 510 [mm9:11:52060011-52060032:+] 0.5651 120 6 -7.01 -0.1947 MIMAT0000215 mmu-miR-186 21402 Skp1a ucggguuuuccucuuAAGAAAc |||||| uuuuucuuuuuuuuuUUCUUUu 2 8 501 522 [mm9:11:52060023-52060044:+] 0.5651 120 6 -3.59 -0.3460 MIMAT0000225 mmu-miR-195 21402 Skp1a cgguuauaaAGACACGACGAu ||| ||||||| cuuccaaccUCUAUGCUGCUg 2 13 432 452 [mm9:11:52059954-52059974:+] 0.5816 152 7 -19.27 -0.5387 MIMAT0000248 mmu-miR-30e 21402 Skp1a gaaGGUCA--GUUCC--UACAAAUGu |:||| || | ||||||: augCUAGUUGCACUGCUCUGUUUAUa 2 20 43 68 [mm9:11:52059565-52059590:+] 0.7475 125 0 -11.36 -0.2211 MIMAT0000379 mmu-miR-301a 21402 Skp1a cgaAACUGUUAUGAU-AACGUGAc || |||:||| ||||||| uugUUCCAAAUGCUAGUUGCACUg 2 21 34 57 [mm9:11:52059556-52059579:+] 0.7475 163 7 -19.85 -0.8719 MIMAT0000387 mmu-miR-130b 21402 Skp1a uacgggaaaguAGUAACGUGAc | :||||||| guuccaaaugcUAGUUGCACUg 2 12 36 57 [mm9:11:52059558-52059579:+] 0.7475 143 7 -16.95 -0.8788 MIMAT0000514 mmu-miR-30c 21402 Skp1a cgacucucacauccuACAAAUGu ||||||: cuaguugcacugcucUGUUUAUa 2 9 46 68 [mm9:11:52059568-52059590:+] 0.7475 124 0 -8.25 -0.2171 MIMAT0000515 mmu-miR-30d 21402 Skp1a gaaGGUCAGC----CCCUACAAAUGu |:|||:| | ||||||: augCUAGUUGCACUGCUCUGUUUAUa 2 20 43 68 [mm9:11:52059565-52059590:+] 0.7475 126 0 -14.30 -0.2211 MIMAT0000516 mmu-miR-148a 21402 Skp1a uguuucaagAC-AUC-ACGUGACu || ||| ||||||| uguuccaaaUGCUAGUUGCACUGc 2 14 35 58 [mm9:11:52059557-52059580:+] 0.7475 147 7 -15.76 -1.0576 MIMAT0000516 mmu-miR-148a 21402 Skp1a uguUUCAAGACAUCACGU-GACu ||| | || |||||| ||| gguAAGCU-UG-AGUGCAGCUGg 2 20 452 472 [mm9:11:52059974-52059994:+] 0.5651 123 0 -16.73 -0.1642 MIMAT0000526 mmu-miR-15a 21402 Skp1a guGUUUGGUAAUACACGACGAu | |||| | | ||||||| uuCCAACC--UCUAUGCUGCUg 2 21 433 452 [mm9:11:52059955-52059974:+] 0.5816 153 7 -15.76 -0.5316 MIMAT0000527 mmu-miR-16 21402 Skp1a gcGGUUAUAAAUGCACGACGAu |||| | || ||||||| uuCCAACCUCUA--UGCUGCUg 2 21 433 452 [mm9:11:52059955-52059974:+] 0.5816 153 7 -15.23 -0.5115 MIMAT0000531 mmu-miR-22 21402 Skp1a ugucaaGAAGUUG-ACCGUCGAa || ||: ||||||| cggaaaCUGGAAUAGGGCAGCUu 2 17 389 411 [mm9:11:52059911-52059933:+] 0.5981 143 7 -17.33 -0.6771 MIMAT0000546 mmu-miR-103 21402 Skp1a aguaucgggacauGUUACGACGa | ||||||| ugucuuccaaccuCUAUGCUGCu 2 11 429 451 [mm9:11:52059951-52059973:+] 0.5816 142 7 -15.18 -0.4444 MIMAT0000546 mmu-miR-103 21402 Skp1a aguaucgggacauguUACGACga |||||| caacuuaagaaaaguAUGCUGaa 3 9 331 353 [mm9:11:52059853-52059875:+] 0.6178 120 0 -8.29 -0.3942 MIMAT0000548 mmu-miR-322 21402 Skp1a agguuUUGUACUUAACGACGAc ||| | | ||||||| cuuccAACCUCUA-UGCUGCUg 2 18 432 452 [mm9:11:52059954-52059974:+] 0.5816 147 7 -16.93 -0.5011 MIMAT0000580 mmu-miR-148b 21402 Skp1a uguUUCAAGACACUACGUGACu || | || | ||||||| uccAAAUGCU-AGUUGCACUGc 2 20 38 58 [mm9:11:52059560-52059580:+] 0.7475 149 7 -13.56 -1.0576 MIMAT0000580 mmu-miR-148b 21402 Skp1a uguuUCAAGACAC-UAC-GUGACu | | ||||| || ||||| ----ACUGCUGUGCCUGUCACUGu 2 19 1 20 [mm9:11:52059523-52059542:+] 0.7475 121 0 -15.92 -0.8185 MIMAT0000582 mmu-miR-338-3p 21402 Skp1a guuGUUUUAGUGACUACGACcu :||:| | | |||||| acuUAAGAAAAGU-AUGCUGaa 3 20 333 353 [mm9:11:52059855-52059875:+] 0.6178 129 0 -7.71 -0.3651 MIMAT0004651 mmu-miR-340-5p 21402 Skp1a uuagucagaguaacgAAAUAUu |||||| aguugcacugcucugUUUAUAa 2 8 48 69 [mm9:11:52059570-52059591:+] 0.7475 120 6 -9.19 -0.3037 MIMAT0000616 mmu-miR-101b 21402 Skp1a aaGUCGAUAGUGUCA-UGACAu | |||:| | || ||||| -aCUGCUGUGCCUGUCACUGUa 2 20 1 21 [mm9:11:52059523-52059543:+] 0.7475 123 0 -15.55 -0.9367 MIMAT0000647 mmu-miR-107 21402 Skp1a acuaucgggacauGUUACGACGa | ||||||| ugucuuccaaccuCUAUGCUGCu 2 11 429 451 [mm9:11:52059951-52059973:+] 0.5816 142 7 -15.18 -0.4444 MIMAT0000647 mmu-miR-107 21402 Skp1a acuaucgggacauguUACGACga |||||| caacuuaagaaaaguAUGCUGaa 3 9 331 353 [mm9:11:52059853-52059875:+] 0.6178 120 0 -8.29 -0.3942 MIMAT0000666 mmu-miR-320 21402 Skp1a agcgggagAGUUGGGUCGAAAa || |:||||||| uuuuuuaaUCUUCUCAGCUUUg 2 15 527 548 [mm9:11:52060049-52060070:+] 0.5651 150 7 -15.46 -1.0713 MIMAT0000677 mmu-miR-7a 21402 Skp1a ugUUGUUUUAGUGAUCAGAAGGu ||| | :| : | ||||||| uuAACCAUGUGGGU-GUCUUCCa 2 22 416 437 [mm9:11:52059938-52059959:+] 0.5981 151 7 -15.05 -0.5506 MIMAT0000678 mmu-miR-7b 21402 Skp1a ugUUGUUUUAGUGUUCAGAAGGu ||| | :| : : ||||||| uuAACCAUGU-GGGUGUCUUCCa 2 22 416 437 [mm9:11:52059938-52059959:+] 0.5981 147 7 -14.87 -0.5785 MIMAT0000679 mmu-miR-217 21402 Skp1a aggUCAGUCAAGGACUACG-UCAu :||: ||||| |||| ||| aagGGUU-GUUCCAAAUGCUAGUu 2 21 29 51 [mm9:11:52059551-52059573:+] 0.7475 126 0 -16.49 -0.8899 MIMAT0003151 mmu-miR-378 21402 Skp1a ggaAGAC-UGAGGUUCAGGUCa | || | |:| ||||||| gcaUGUGUAGUUCCAGUCCAGa 2 19 116 137 [mm9:11:52059638-52059659:+] 0.6307 153 7 -18.62 -0.6369 MIMAT0000747 mmu-miR-382 21402 Skp1a gcuuagguggugcUUGUUGAAg |||||||| acauuguaaauaaAACAACUUa 2 10 316 337 [mm9:11:52059838-52059859:+] 0.6178 145 7 -8.73 -1.2986 MIMAT0004745 mmu-miR-384-5p 21402 Skp1a ugUAACGGAUC-CUUAA-CAAAUGu :|||||||| || || |||||| auGUUGCCUAGAGAUUUAGUUUACu 2 22 552 576 [mm9:11:52060074-52060098:+] 0.5651 148 6 -20.80 -0.5786 MIMAT0004745 mmu-miR-384-5p 21402 Skp1a ugUAACG-GAUCCUUAACAAAUGu :|||| || | ||||||: uaGUUGCACU--GCUCUGUUUAUa 2 22 47 68 [mm9:11:52059569-52059590:+] 0.7475 129 0 -13.19 -0.2191 MIMAT0003172 mmu-miR-542-3p 21402 Skp1a aaagucaauaguuaGACAGUGu ||||||| ----acugcugugcCUGUCACu 2 9 1 18 [mm9:11:52059523-52059540:+] 0.7475 140 7 -10.70 -0.9338 MIMAT0003377 mmu-miR-302d 21402 Skp1a uguGAGUUUGUACCUUC-GUGAAu :|||| :| ||| ||||| cuuUUCAAUUAAAAAAGACACUUa 2 21 626 649 [mm9:11:52060148-52060171:+] 0.5651 124 0 -11.19 -1.1885 MIMAT0004186 mmu-miR-301b 21402 Skp1a cgaAACUGUUAUGGU-AACGUGAc || |||:|:| ||||||| uugUUCCAAAUGCUAGUUGCACUg 2 21 34 57 [mm9:11:52059556-52059579:+] 0.7475 159 7 -19.16 -0.8719 MIMAT0003729 mmu-miR-216b 21402 Skp1a agUGUA-AACGGACGUCUCUAAa |:|| |||||| ||||||| gaAUAUGUUGCCU--AGAGAUUu 2 21 548 568 [mm9:11:52060070-52060090:+] 0.5651 164 7 -18.35 -0.7393 MIMAT0003729 mmu-miR-216b 21402 Skp1a agUGUAAACGG--A-CGUCUCUAaa |:| |||:: | :|||||| uuAUAAUUGUUAAUAUUAGAGAUca 3 21 64 88 [mm9:11:52059586-52059610:+] 0.7057 126 0 -10.67 -0.1963 MIMAT0003450 mmu-miR-488 21402 Skp1a cugguucuuugUCGGAAAGUu ||||||||| uaacuucagugAGCCUUUCAa 2 11 290 310 [mm9:11:52059812-52059832:+] 0.6246 150 7 -16.01 -1.0707 MIMAT0003450 mmu-miR-488 21402 Skp1a cuggUUCUUU--GUCGGAAAGUu || || :| |||||:| uaaaAAUUAAUUUAACCUUUUAa 2 18 713 735 [mm9:11:52060235-52060257:+] 0.5944 128 0 -8.69 -0.1206 MIMAT0003453 mmu-miR-497 21402 Skp1a auGUUUGGUGUCACACGACGAc | |||| | | ||||||| uuCCAACCUC--UAUGCUGCUg 2 21 433 452 [mm9:11:52059955-52059974:+] 0.5816 153 7 -18.36 -0.5281 MIMAT0003513 mmu-miR-505 21402 Skp1a ucuuuuggucguucaCAACUGc |||||| agugagccuuucaaaGUUGACa 2 8 297 318 [mm9:11:52059819-52059840:+] 0.6246 120 6 -13.06 -0.1829 MIMAT0003515 mmu-miR-721 21402 Skp1a aagggggaaaAUUAACGUGAc ||:||||||| uuccaaaugcUAGUUGCACUg 2 12 37 57 [mm9:11:52059559-52059579:+] 0.7475 151 7 -21.04 -0.8788 MIMAT0004941 mmu-miR-544 21402 Skp1a cucGAACGAUUUU--UACGUCUUa ||| |||| |||| ||| caaCUUAAGAAAAGUAUGCUGAAa 2 20 331 354 [mm9:11:52059853-52059876:+] 0.6178 126 0 -8.41 -0.1327 MIMAT0004943 mmu-miR-653 21402 Skp1a guCAUCUCUAACA--AAGUUGUg ||:|: | ||| |||||| gaGUGGGAACUGUAACUCAACAa 2 20 595 617 [mm9:11:52060117-52060139:+] 0.5651 126 6 -14.63 -0.2124

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G006728 Skp1a Mus musculus 21402 19536157 0 0 R41723; MOUSE$SKP1A_01; Binding factors: c-Myc // 0 0 R44133; MOUSE$SKP1A_02; Binding factors: mmu-miR-34a-5p , mmu-miR-34b-5p , mmu-miR-34c-5p , mmu-miR-449a-5p , mmu-miR-449b , mmu-miR-449c-5p // 0 0 R44142; MOUSE$SKP1A_03; Binding factors: mmu-miR-130a-3p , mmu-miR-130b-3p , mmu-miR-19a-3p , mmu-miR-19b-3p , mmu-miR-301a-3p , mmu-miR-301b-3p , mmu-miR-721 // 0 0 R44143; MOUSE$SKP1A_04; Binding factors: mmu-miR-30a-5p , mmu-miR-30b-5p , mmu-miR-30c-5p , mmu-miR-30d-5p , mmu-miR-30e-5p , mmu-miR-384-5p // 0 0 R44144; MOUSE$SKP1A_05; Binding factors: mmu-miR-30a-5p , mmu-miR-30b-5p , mmu-miR-30c-5p , mmu-miR-30d-5p , mmu-miR-30e-5p , mmu-miR-384-5p // 0 0 R44151; MOUSE$SKP1A_06; Binding factors: mmu-miR-101a-3p , mmu-miR-101b-3p , mmu-miR-139-5p , mmu-miR-144-3p , mmu-miR-582-5p // 0 0 R44152; MOUSE$SKP1A_07; Binding factors: mmu-miR-193a-3p , mmu-miR-193b-3p // 0 0 R44159; MOUSE$SKP1A_08; Binding factors: mmu-miR-128-3p , mmu-miR-27a-3p , mmu-miR-27b-3p , mmu-miR-673-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Skp1a mmu-miR-216b beg:552 end:569 pic:3' AGTGTAAACGGACGTCTCTAAA 5'& |||||| |||||||| &5' ------TTGCCT--AGAGATTT 3' Skp1a mmu-miR-378 beg:122 end:137 pic:3' GGAAGACTGAGGTTCAGGTCA 5'& | .||| ||||||| &5' ------G-TTCC-AGTCCAG- 3' Skp1a mmu-miR-672 beg:424 end:443 pic:3' AGTGTGTGTCAT-GT-GGTTGGAGT 5'& .||. | |||||||| &5' --------GGTGTCTTCCAACCTC- 3' Skp1a mmu-miR-488 beg:298 end:311 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& |||||||||| &5' -----------AGCCTTTCAA 3' Skp1a mmu-miR-542-3p beg:8 end:18 pic:3' AAAGTCAATAGTTAGACAGTGT 5'& ||||||| &5' --------------CTGTCAC- 3' Skp1a mmu-miR-300 beg:702 end:713 pic:3' CTTCTCTCGAACGGGAACGTAT 5'& |||||||. &5' --------------CTTGCATG 3' Skp1a mmu-miR-1952 beg:687 end:698 pic:3' GTCTTCCTCCCACCTCT 5'& |||||||| &5' ---------GGTGGAGA 3' Skp1a mmu-miR-7b beg:427 end:438 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& |||||||| &5' ---------------GTCTTCCA 3' Skp1a mmu-let-7d beg:257 end:275 pic:3' TTGATACGTTGGATGATGGAGA 5'& | |..| ||.||||| &5' ------GTGATTT-CTGCCTCT 3' Skp1a mmu-let-7f beg:257 end:274 pic:3' TTGATATGTTAGATGATGGAGT 5'& . ||.| ||.|||| &5' ------GTGATTT-CTGCCTC- 3' Skp1a mmu-let-7g beg:257 end:274 pic:3' TTGACATGTTTGATGATGGAGT 5'& || .|.| ||.|||| &5' ----GT---GATTTCTGCCTC- 3' Skp1a mmu-miR-107 beg:436 end:452 pic:3' ACTATCGGGACATGTTACGACGA 5'& ||| |||||||| &5' -------CCTCT---ATGCTGCT 3' Skp1a mmu-miR-1186b beg:112 end:131 pic:3' CACCACGTACGGAAATTAGGGT 5'& ||||||. ||.|.||| &5' ----TGCATGTG--TAGTTCCA 3' Skp1a mmu-miR-130a beg:40 end:58 pic:3' TACGGGAAAATTGTAACGTGAC 5'& ||||. .|||||||| &5' ATGCTA-------GTTGCACTG 3' Skp1a mmu-miR-130b beg:40 end:58 pic:3' TACGGGAAAGTAGTAACGTGAC 5'& ||||. .|||||||| &5' ATGCTA-------GTTGCACTG 3' Skp1a mmu-miR-139-3p beg:93 end:113 pic:3' GAGGTTGTCCCGGCGCAGAGGT 5'& |||| ||| .||||.|| &5' ----AACATCGCCTTGTCTTCA 3' Skp1a mmu-miR-140star beg:644 end:662 pic:3' GGCACCAAGATGGG--ACACCAT 5'& .|||. ||||||| &5' --------TTACTTCATGTGGTA 3' Skp1a mmu-miR-142-3p beg:682 end:706 pic:3' AGGTATTTCATC-CTTTGTGATGT 5'& ||| |.||.| |||||||||| &5' TCCC--AGGTGGAGAAACACTAC- 3' Skp1a mmu-miR-143 beg:652 end:671 pic:3' CTCGATGTCACGAAGTAGAGT 5'& |. || ||||||. &5' ----TGTGGTATGTCATCTT- 3' Skp1a mmu-miR-145 beg:455 end:475 pic:3' TCCCTAAGGACCCTT-TTGACCTG 5'& |.|| | |.||||.| &5' -------CTTGAGTGCAGCTGGGC 3' Skp1a mmu-miR-148a beg:41 end:58 pic:3' TGTTTCAAGAC-ATC-ACGTGACT 5'& || ||| ||||||| &5' ---------TGCTAGTTGCACTG- 3' Skp1a mmu-miR-148b beg:37 end:58 pic:3' TGTTTCAAGA-CACTACGTGACT 5'& |||| || || ||||||| &5' -CAAATG-CTAGT--TGCACTG- 3' Skp1a mmu-miR-151-3p beg:555 end:575 pic:3' GGAGTTCCTCGGAGTCAGATC 5'& ||| ||| .|.|||.|| &5' CCTA---GAGATTTAGTTTA- 3' Skp1a mmu-miR-151-5p beg:479 end:500 pic:3' TGATCTGACACTCGAGGAGCT 5'& |.|.||. |||| |||.| &5' ATTGGATC-TGAGG-CCTTG- 3' Skp1a mmu-miR-152 beg:36 end:58 pic:3' GGTTCAAGA-CAGTACGTGACT 5'& |||| || || ||||||| &5' CCAAATGCTAGT--TGCACTG- 3' Skp1a mmu-miR-1839-5p beg:257 end:273 pic:3' GTTCTGGACAAGATAGATGGAA 5'& || |||.||| &5' --------GTGATTTCTGCCT- 3' Skp1a mmu-miR-188-3p beg:582 end:603 pic:3' ACGTTTGGGACGTACACCCTC 5'& || . .|| | |||||| &5' TGTGGTT-TTGGA-GTGGGA- 3' Skp1a mmu-miR-18astar beg:387 end:409 pic:3' GTCTTCCTCGTGA----ATCCCGTCA 5'& ||| ||| |||||||| &5' -----GGAA-ACTGGAATAGGGCAG- 3' Skp1a mmu-miR-1904 beg:152 end:173 pic:3' GGAGGGAGGTCTCCTCGTCTTG 5'& .|.|.||. | |||||||| &5' -TTTCTTCT-GT-GAGCAGAA- 3' Skp1a mmu-miR-1907 beg:430 end:452 pic:3' TGGAGGTCTAGGAG--ACGACGAG 5'& |.|||| |||| ||||||| &5' -CTTCCAA--CCTCTATGCTGCT- 3' Skp1a mmu-miR-1948 beg:545 end:564 pic:3' GACATGCTCACGAGACGGATTT 5'& || .||||||.| &5' ------GAATATGTTGCCTAGA 3' Skp1a mmu-miR-195 beg:432 end:453 pic:3' CGGTTATAAAGACACGACGAT 5'& |||| ||| |||||||. &5' -CCAACC--TCTATGCTGCTG 3' Skp1a mmu-miR-1951 beg:95 end:118 pic:3' ATCGGT-GTGGT-CAGAGGTGATG 5'& || |.|| ||||.||||.| &5' ----CATCGCCTTGTCTTCACTGC 3' Skp1a mmu-miR-1953 beg:229 end:250 pic:3' GTCTTCGGACT-CTTGAAAGGGT 5'& | .|| |..||||||| &5' --GTGGCATTTTGGGCTTTCCC- 3' Skp1a mmu-miR-1961 beg:258 end:274 pic:3' AAGATTGATGATGGAGT 5'& |.|.| ||.|||| &5' ---TGATTTCTGCCTC- 3' Skp1a mmu-miR-1968 beg:816 end:828 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& |||||.||| &5' --------------AACAGTTGC- 3' Skp1a mmu-miR-1983 beg:679 end:695 pic:3' TCTTTTGTACGA-GGTCCACTC 5'& ||.| |||||||. &5' --------TGTTCCCAGGTGG- 3' Skp1a mmu-miR-19astar beg:739 end:758 pic:3' CATCACGTTGATACGTTTTGAT 5'& ||||.| |.|||||| &5' --AGTGTATG---GTAAAACT- 3' Skp1a mmu-miR-201 beg:138 end:156 pic:3' TTCTTGTTAC-GGAA--TGACTCAT 5'& | ||| .|||||| &5' ---------GACCTGTGGCTGAGT- 3' Skp1a mmu-miR-2135 beg:480 end:499 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& |.|| | ||.|||. &5' ---TTGGATCTGAGGCCTT- 3' Skp1a mmu-miR-2139 beg:453 end:471 pic:3' CGTCAATGGTCCTCG---TCGCGTCGA 5'& ||| ||.|||||| &5' ------------AGCTTGAGTGCAGCT 3' Skp1a mmu-miR-2140 beg:571 end:588 pic:3' TGGTGGTTCTAGACGTGGA 5'& ||.||| || |.||. &5' ACTACCCAG-TTTGT---- 3' Skp1a mmu-miR-27astar beg:285 end:307 pic:3' ACGAGTGTTCGTCGATTCGGGA 5'& |.| || ||| |.||||.| &5' -GTTAACTT-CAG-TGAGCCTT 3' Skp1a mmu-miR-27bstar beg:463 end:478 pic:3' CAAGTGGTTAGTCGATTCGAGA 5'& |||||..||||| &5' ----------CAGCTGGGCTCT 3' Skp1a mmu-miR-290-3p beg:220 end:240 pic:3' CCCGAATTTTGATCCGCCGTGAAA 5'& || ||| |.||||.||| &5' --GCGGAAA-----GTGGCATTTT 3' Skp1a mmu-miR-292-3p beg:216 end:240 pic:3' TGTGA-GTTTTGGACCGCCGTGAAA 5'& | || |..|| |.||||.||| &5' -CTCTGCGGAAA---GTGGCATTTT 3' Skp1a mmu-miR-295 beg:218 end:240 pic:3' TCTGAGTTTTCA-TCATCGTGAAA 5'& ||| .| |||.|||.||| &5' ---CTCTGCGGAAAGTGGCATTTT 3' Skp1a mmu-miR-29astar beg:74 end:91 pic:3' GACTTGTGGTTTTCTTTAGTCA 5'& .| |||.|||||| &5' --------TATTAGAGATCAGT 3' Skp1a mmu-miR-301a beg:39 end:58 pic:3' CGAAACTGTTATGA-TAACGTGAC 5'& |||.|| .|||||||| &5' --------AATGCTAGTTGCACTG 3' Skp1a mmu-miR-301b beg:39 end:58 pic:3' CGAAACTGTTATGGT-AACGTGAC 5'& |||.|.| |||||||| &5' --------AATGCTAGTTGCACTG 3' Skp1a mmu-miR-322 beg:431 end:453 pic:3' AGGTTTTGTACTTAACGACGAC 5'& ||||| |||||||| &5' TCCAACCTCTA---TGCTGCTG 3' Skp1a mmu-miR-327 beg:671 end:693 pic:3' TAGGAGT-ACGGGGAGTTCA 5'& ||| ||| ||..|| ||.|| &5' ATCATCATTGTTCC-CAGGT 3' Skp1a mmu-miR-330 beg:541 end:566 pic:3' CGGATTCTGTGTC-CGGGTCTCT 5'& ||.| |.|. |||.||||| &5' GCTTTGAATATGTTGCCTAGAGA 3' Skp1a mmu-miR-3473 beg:1 end:22 pic:3' CCGACTCGG-TAGAGAGGT 5'& |||| ||| .|| || .| &5' -GCTGTGCCTGTCACTGTA 3' Skp1a mmu-miR-3475 beg:265 end:277 pic:3' AAGTTTGGTACACGGAGGTCT 5'& ||||||.|| &5' -----------TGCCTCTAG- 3' Skp1a mmu-miR-34b-5p beg:42 end:60 pic:3' TGTTAGTCGATTAATGTGACGGA 5'& ||||.||.||||||. &5' -------GCTAGTTGCACTGCT- 3' Skp1a mmu-miR-34c beg:37 end:60 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& ||| |||| |.||||||. &5' -CAAAT-GCTAGTTGCACTGCT- 3' Skp1a mmu-miR-384-5p beg:47 end:69 pic:3' TGTAACG-GATCCTTAACAAATGT 5'& .|||| ||. ||||||.| &5' --GTTGCACTGCTC--TGTTTATA 3' Skp1a mmu-miR-384-5p beg:552 end:576 pic:3' TGTAACGGATC-CTTAA-CAAATGT 5'& .|||||||| || || |||||| &5' --GTTGCCTAGAGATTTAGTTTAC- 3' Skp1a mmu-miR-412 beg:684 end:696 pic:3' GCCGATCACCTGGTCCACTT 5'& |||||||.| &5' -----------CCAGGTGGA 3' Skp1a mmu-miR-449a beg:36 end:60 pic:3' TGGT---CGATTGTTATGTGACGGT 5'& ||| ||||. |.||||||. &5' -CCAAATGCTAGT--TGCACTGCT- 3' Skp1a mmu-miR-449b beg:42 end:60 pic:3' CGGTCGATTGTTGTGACGGA 5'& ||||. .||||||. &5' ----GCTAGTTGCACTGCT- 3' Skp1a mmu-miR-449c beg:36 end:60 pic:3' GGT---CGATCGTTACGTGACGGA 5'& ||| |||||. ||||||||. &5' CCAAATGCTAGT--TGCACTGCT- 3' Skp1a mmu-miR-450b-3p beg:673 end:690 pic:3' TACGTACGTTTTACAAGGGTTA 5'& ||| || ||||||||. &5' ---CAT-CAT--TGTTCCCAG- 3' Skp1a mmu-miR-450b-3p beg:418 end:439 pic:3' TACGTACGTTTTACA-AGGGTTA 5'& |||| . .||| |.|||| &5' ---CATGTGG-GTGTCTTCCAA- 3' Skp1a mmu-miR-452 beg:280 end:304 pic:3' CAGAGTCAAA-GGAGACGTTTGT 5'& ||| ||||| |.|| | |.| &5' GTC-CAGTTAACTTCAGTGAGC- 3' Skp1a mmu-miR-452 beg:308 end:328 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& |||| | .||.|||.| &5' -----AGTTGACATTGTAAATA 3' Skp1a mmu-miR-453 beg:397 end:412 pic:3' ACGTTCGAGTGATACTCCGTTGGA 5'& || ||||.|.| &5' ------------ATAGGGCAGCTT 3' Skp1a mmu-miR-484 beg:394 end:414 pic:3' TAGCCCTCC-CCTGACTCGGACT 5'& ||| ||.| |||.||| &5' ----GGAATAGGGC--AGCTTGA 3' Skp1a mmu-miR-488 beg:612 end:634 pic:3' CTGGTTCTTT-GTCGGAAAGTT 5'& ||| .|||.|||||| &5' ---CAATTTGTTAGCTTTTCAA 3' Skp1a mmu-miR-488 beg:777 end:795 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& ||||| ||.|||||| &5' ---CAAGAT---GCTTTTCAA 3' Skp1a mmu-miR-497 beg:434 end:453 pic:3' ATGTTTGGTGTCACACGACGAC 5'& |||| | |||||||| &5' ----AACCTCTA--TGCTGCTG 3' Skp1a mmu-miR-509-5p beg:579 end:600 pic:3' TACTAACGGTGTAAGACCTCAT 5'& | |||. .||.||||||. &5' --GTTTGTG--GTTTTGGAGTG 3' Skp1a mmu-miR-582-5p beg:589 end:609 pic:3' TCATTGACCA-ACTTGTTGACAT 5'& .||| ||.. ||||||| &5' -----TTGGAGTGGG-AACTGTA 3' Skp1a mmu-miR-674 beg:282 end:301 pic:3' ATGTGGTGAGGGTAGAGTCACG 5'& ||| |. .|||||| &5' ----CCAGTTAAC-TTCAGTG- 3' Skp1a mmu-miR-682 beg:1 end:22 pic:3' GTCTGAA--GTGACACTGACGTC 5'& .|| | |||| ||||.| &5' ---GCTGTGC-CTGTCACTGTA- 3' Skp1a mmu-miR-693-5p beg:135 end:153 pic:3' CTTTTGAAAGCCT--ACACCGAC 5'& || || |||||||| &5' --------TCAGACCTGTGGCTG 3' Skp1a mmu-miR-706 beg:142 end:159 pic:3' AAAAAACTCTGTCCCAAAGAGA 5'& || |.| | ||||||. &5' -----TGTGGCTGAGTTTCTT- 3' Skp1a mmu-miR-713 beg:0 end:22 pic:3' CGAC-ACACGGA-AGTCACGT 5'& ||| ||||||| ||| ||.| &5' -CTGCTGTGCCTGTCACTGTA 3' Skp1a mmu-miR-713 beg:446 end:468 pic:3' CGACACA--CGGAAGTCACGT 5'& |||| || ||.| |||||| &5' GCTG-GTAAGCTTG-AGTGCA 3' Skp1a mmu-miR-721 beg:35 end:58 pic:3' AAGGGGG-AAAATTAACGTGAC 5'& |.|| | ||.|||||||| &5' -TTCCAAATGCTAGTTGCACTG 3' Skp1a mmu-miR-741 beg:461 end:482 pic:3' AGATGTATCTTACCGTAGAGAGT 5'& |.|| ||| |||||.| &5' --TGCAGCTG--GGC-TCTCTTA 3' Skp1a mmu-miR-742 beg:573 end:594 pic:3' AAATGGGTCGTACCACCGAAAG 5'& |||||||. ||||.||| &5' --TACCCAGTTT-GTGGTTTT- 3' Skp1a mmu-miR-742star beg:411 end:431 pic:3' ACTAATC-GTTGGTACACTCAT 5'& || .|||||||||.||. &5' -----AGTTAACCATGTGGGTG 3' Skp1a mmu-miR-743b-5p beg:537 end:553 pic:3' ACTACCTGTGGTC-AGACTTGT 5'& .||| |.||||.| &5' ---------TCAGCTTTGAATA 3' Skp1a mmu-miR-743b-5p beg:185 end:202 pic:3' ACTACCTGTGGTCAGACTTGT 5'& ||..| ||||||.| &5' -------CATTACTCTGAATA 3' Skp1a mmu-miR-7a beg:427 end:438 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& |||||||| &5' ---------------GTCTTCCA 3' Skp1a mmu-miR-871 beg:185 end:202 pic:3' GTACTGACCGTGATTAGACTTAT 5'& ||.|| |||||||| &5' ---------CATTACTCTGAATA 3' Skp1a mmu-miR-872star beg:110 end:129 pic:3' TCCTCCGATGACGT---TATCAAGT 5'& |||||| .|||||| &5' --------ACTGCATGTGTAGTTC- 3' Skp1a mmu-miR-872star beg:264 end:281 pic:3' TCCTCCGATGACGTT-ATCAAGT 5'& |||| ||||||| &5' ---------CTGCCTCTAGTTCA 3' Skp1a mmu-miR-874 beg:392 end:409 pic:3' AGCCAGGGAGCCCGGTCCCGTC 5'& || || .||||||| &5' -------CT-GGAATAGGGCAG 3' Skp1a mmu-miR-883a-5p beg:532 end:545 pic:3' CATTGACGATGAAG-AGAGTCGT 5'& || ||||||| &5' ------------TCTTCTCAGC- 3' Skp1a mmu-miR-93 beg:219 end:241 pic:3' GATGGACGTGCTTG--TCGTGAAAC 5'& .||||. ||| .|||.|||| &5' ---TCTGCG-GAAAGTGGCATTTTG 3' Skp1a mmu-miR-96 beg:454 end:476 pic:3' TCGTTTTTACA-CGATCACGGTTT 5'& ||| .|.|| |||.| ||. &5' AGCTTGAGTGCAGCTGG-GCT--- 3' Skp1a mmu-miR-98 beg:257 end:274 pic:3' TTGTTATGTTGAATGATGGAGT 5'& . |.|| ||.|||| &5' ------GTGATTT-CTGCCTC- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Skp1a RAID00087155 mmu-miR-449a-5p miRNA MIMAT0001542 Skp1a mRNA 21402 CLIP-seq 0.5483 Skp1a RAID00135405 mmu-miR-145b miRNA MIMAT0025105 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID00189514 mmu-miR-382-5p miRNA MIMAT0000747 Skp1a mRNA 21402 Prediction 0.2202 Skp1a RAID00191778 mmu-miR-6980-5p miRNA MIMAT0027862 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID00270561 mmu-miR-544-3p miRNA MIMAT0004941 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID00299680 mmu-miR-15b-5p miRNA MIMAT0000124 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID00403681 mmu-miR-379-5p miRNA MIMAT0000743 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID00464549 mmu-miR-3474 miRNA MIMAT0015646 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID00726746 mmu-miR-30e-5p miRNA MIMAT0000248 Skp1a mRNA 21402 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7226 Skp1a RAID00745063 mmu-miR-340-5p miRNA MIMAT0004651 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6478 Skp1a RAID00747979 mmu-miR-142a-3p miRNA MIMAT0000155 Skp1a mRNA 21402 Prediction 0.2202 Skp1a RAID00797599 mmu-miR-384-3p miRNA MIMAT0001076 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID00851436 mmu-miR-103-3p miRNA MIMAT0000546 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID00922763 mmu-miR-5619-3p miRNA MIMAT0022366 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID00930382 mmu-miR-448-3p miRNA MIMAT0001533 Skp1a mRNA 21402 CLIP-seq 0.5483 Skp1a RAID00942068 mmu-miR-154-5p miRNA MIMAT0000164 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID01051727 mmu-miR-378a-3p miRNA MIMAT0003151 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID01242702 mmu-miR-721 miRNA MIMAT0003515 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6559 Skp1a RAID01254454 mmu-miR-148a-3p miRNA MIMAT0000516 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6478 Skp1a RAID01301941 mmu-miR-7078-3p miRNA MIMAT0028063 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID01311007 mmu-miR-15a-5p miRNA MIMAT0000526 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID01329349 mmu-miR-101b-3p miRNA MIMAT0000616 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6478 Skp1a RAID01334963 mmu-miR-7b-5p miRNA MIMAT0000678 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6478 Skp1a RAID01417064 mmu-miR-145a-5p miRNA MIMAT0000157 Skp1a mRNA 21402 Prediction 0.2381 Skp1a RAID01427123 mmu-miR-505-3p miRNA MIMAT0003513 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID01448754 mmu-miR-6904-3p miRNA MIMAT0027709 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID01456938 mmu-miR-34b-5p miRNA MIMAT0000382 Skp1a mRNA 21402 CLIP-seq 0.5483 Skp1a RAID01477128 mmu-miR-5098 miRNA MIMAT0020605 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID01606738 mmu-miR-195a-5p miRNA MIMAT0000225 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID01659503 mmu-miR-7116-5p miRNA MIMAT0028129 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID01732651 mmu-miR-217-5p miRNA MIMAT0000679 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID01746754 mmu-miR-34a-5p miRNA MIMAT0000542 Skp1a mRNA 21402 CLIP-seq 0.5483 Skp1a RAID01750634 mmu-miR-22-3p miRNA MIMAT0000531 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID01757721 mmu-miR-6240 miRNA MIMAT0024861 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID01777514 mmu-miR-1952 miRNA MIMAT0009423 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID01869665 mmu-miR-497a-5p miRNA MIMAT0003453 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID01940841 mmu-miR-7a-1-3p miRNA MIMAT0004670 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID01999181 mmu-miR-653-5p miRNA MIMAT0004943 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID02043554 mmu-miR-7050-3p miRNA MIMAT0028005 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02090672 mmu-miR-467h miRNA MIMAT0005855 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02097957 mmu-miR-107-3p miRNA MIMAT0000647 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID02112187 mmu-miR-700-5p miRNA MIMAT0017256 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02175469 mmu-miR-488-3p miRNA MIMAT0003450 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID02199473 mmu-miR-378c miRNA MIMAT0025138 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02210736 mmu-miR-30c-5p miRNA MIMAT0000514 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID02262283 mmu-miR-467e-5p miRNA MIMAT0005293 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02322645 mmu-miR-3058-5p miRNA MIMAT0014813 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02357477 mmu-miR-449a-3p miRNA MIMAT0017180 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02421943 mmu-miR-6945-5p miRNA MIMAT0027790 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02534593 mmu-miR-3085-3p miRNA MIMAT0014879 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02554639 mmu-miR-302d-3p miRNA MIMAT0003377 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02563624 mmu-miR-465a-5p miRNA MIMAT0002106 Skp1a mRNA 21402 CLIP-seq 0.5483 Skp1a RAID02606216 mmu-miR-497a-3p miRNA MIMAT0017247 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02638319 mmu-miR-325-3p miRNA MIMAT0004640 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02668668 mmu-miR-7217-3p miRNA MIMAT0028403 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02737807 mmu-miR-130b-3p miRNA MIMAT0000387 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6478 Skp1a RAID02745608 mmu-miR-216b-5p miRNA MIMAT0003729 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID02827903 mmu-miR-542-3p miRNA MIMAT0003172 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID02835476 mmu-miR-186-5p miRNA MIMAT0000215 Skp1a mRNA 21402 Prediction 0.2202 Skp1a RAID02953269 mmu-miR-668-5p miRNA MIMAT0017237 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID02996615 mmu-miR-129b-3p miRNA MIMAT0029863 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID03004565 mmu-miR-301b-3p miRNA MIMAT0004186 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6478 Skp1a RAID03004697 mmu-miR-30b-5p miRNA MIMAT0000130 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID03140035 mmu-mir-325 miRNA MI0000597 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID03168351 mmu-miR-320-3p miRNA MIMAT0000666 Skp1a mRNA 21402 Prediction 0.2202 Skp1a RAID03181633 mmu-miR-130a-3p miRNA MIMAT0000141 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6478 Skp1a RAID03212104 mmu-miR-3059-3p miRNA MIMAT0014812 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID03261105 mmu-miR-8099 miRNA MIMAT0031401 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID03439102 mmu-miR-322-5p miRNA MIMAT0000548 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID03501669 mmu-miR-148b-3p miRNA MIMAT0000580 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6478 Skp1a RAID03515804 mmu-miR-301a-3p miRNA MIMAT0000379 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6478 Skp1a RAID03555435 mmu-miR-883a-5p miRNA MIMAT0004848 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID03599550 mmu-miR-669b-5p miRNA MIMAT0003476 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID03626021 mmu-miR-384-5p miRNA MIMAT0004745 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID03659767 mmu-miR-16-5p miRNA MIMAT0000527 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID03670396 mmu-miR-7a-5p miRNA MIMAT0000677 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID03759305 mmu-miR-582-5p miRNA MIMAT0005291 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID03771239 mmu-miR-149-5p miRNA MIMAT0000159 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID03867111 mmu-miR-338-3p miRNA MIMAT0000582 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID03913421 mmu-miR-182-5p miRNA MIMAT0000211 Skp1a mRNA 21402 Prediction 0.1828 Skp1a RAID03940111 mmu-miR-30a-5p miRNA MIMAT0000128 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID03970542 mmu-miR-30d-5p miRNA MIMAT0000515 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6308 Skp1a RAID04054537 mmu-miR-152-3p miRNA MIMAT0000162 Skp1a mRNA 21402 CLIP-seq//Prediction 0.6559