DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000161 mmu-miR-151-3p 69942 Rnf113a1 ggAGUUCCUCGGAGUCAGAuc || | | :|||||||| uuUCCAUAAUUCUCAGUCUca 3 20 3 23 [mm9:X:34732415-34732435:+] 0.5782 139 0 -15.30 -0.4316 MIMAT0004539 mmu-miR-183* 69942 Rnf113a1 aauaccgGGAAGCCAUUAAGug |:||| |||||| ------aCUUUCCAUAAUUCuc 3 16 1 16 [mm9:X:34732413-34732428:+] 0.5782 135 0 -9.92 -0.4463 MIMAT0003740 mmu-miR-674 69942 Rnf113a1 augugGUGAGG-GU--AGAGUCAcg | :||| :| ||||||| ----aCUUUCCAUAAUUCUCAGUcu 3 18 1 21 [mm9:X:34732413-34732433:+] 0.5782 127 0 -14.82 -0.1605 MIMAT0003496 mmu-miR-706 69942 Rnf113a1 aaaaaacucuguccCAAAGAGa ||||||: auaaauguuuuguuGUUUCUUa 2 9 26 47 [mm9:X:34732438-34732459:+] 0.5782 124 0 -5.84 -0.5674 MIMAT0004848 mmu-miR-883a-5p 69942 Rnf113a1 caUUGACGAUGAAGAGAGUCGu | :| | |: :||||||: --ACUUUCCAUAAUUCUCAGUc 2 21 1 20 [mm9:X:34732413-34732432:+] 0.5782 132 0 -10.29 -0.1456 MIMAT0004850 mmu-miR-883b-5p 69942 Rnf113a1 acUGACGAUG-GGUAAGAGUCAu ||| :| | : ||||||||| --ACU-UUCCAUAAUUCUCAGUc 2 21 1 20 [mm9:X:34732413-34732432:+] 0.5782 153 7 -17.24 -1.1424 MIMAT0009435 mmu-miR-1962 69942 Rnf113a1 uacACAGG-GUCACG-GUCGGAGa | ||| :| | | |||:||| -acUUUCCAUAAUUCUCAGUCUCa 2 20 1 23 [mm9:X:34732413-34732435:+] 0.5782 133 0 -14.77 -0.1522 MIMAT0003128 mmu-miR-485 69942 Rnf113a1 cuuAAGUAGUGCCGGUCGGAGa | ||| |: :|||:||| cuuUCCAUAAUUCUCAGUCUCa 2 20 2 23 [mm9:X:34732414-34732435:+] 0.5782 139 0 -13.38 -0.1479 MIMAT0003168 mmu-miR-543 69942 Rnf113a1 uucuucacguggcgcUUACAAa |||||| cucagucucaaaauaAAUGUUu 2 8 14 35 [mm9:X:34732426-34732447:+] 0.5782 120 6 -6.38 -0.1393 MIMAT0003182 mmu-miR-494 69942 Rnf113a1 cuccaaagggcacaUACAAAGu ||||||: cagucucaaaauaaAUGUUUUg 2 9 16 37 [mm9:X:34732428-34732449:+] 0.5782 124 0 -5.45 -0.2884 MIMAT0003182 mmu-miR-494 69942 Rnf113a1 cuccaaagggcacauACAAAGu |||||| aaauaaauguuuuguUGUUUCu 2 8 24 45 [mm9:X:34732436-34732457:+] 0.5782 120 6 -8.03 -0.1061 MIMAT0003456 mmu-miR-495 69942 Rnf113a1 uucUUCACGUGGU-ACAAACAAa || ||: ::: ||||| || aauAAAUGUUUUGUUGUUUCUUa 2 20 25 47 [mm9:X:34732437-34732459:+] 0.5782 122 0 -5.24 -0.1303 MIMAT0003482 mmu-miR-499 69942 Rnf113a1 uuuGUAGUGACGUUCAGAAUu ||| |:| : ||||| | uucCAUAAUUCUCAGUCUCAa 2 19 4 24 [mm9:X:34732416-34732436:+] 0.5782 126 0 -7.30 -0.1305 MIMAT0005850 mmu-miR-1192 69942 Rnf113a1 uuaaACCAGACAAACAAACAAa || |:|| |||||| || uaaaUGUUUUG-UUGUUUCUUa 2 19 27 47 [mm9:X:34732439-34732459:+] 0.5782 132 0 -7.86 -0.1278

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G062004 Rnf113a1 Mus musculus 69942

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Rnf113a1; mCG_147976 mmu-miR-151 1 23 GGAGUUCCUC--GGAGUCAGAUC ||: :|||||||| ACUUUCCAUAAUUCUCAGUCUC- Rnf113a1; mCG_147976 mmu-miR-151 3 23 ggAGUUCCUCGGAGUCAGAuc || | | :|||||||| ttTCCATAATTCTCAGTCTca

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf113a1 RAID00515073 mmu-miR-485-5p miRNA MIMAT0003128 Rnf113a1 mRNA 69942 Prediction 0.1828 Rnf113a1 RAID00566990 mmu-miR-543-3p miRNA MIMAT0003168 Rnf113a1 mRNA 69942 Prediction 0.1828 Rnf113a1 RAID02414210 mmu-miR-494-3p miRNA MIMAT0003182 Rnf113a1 mRNA 69942 Prediction 0.1828 Rnf113a1 RAID02683884 mmu-miR-1192 miRNA MIMAT0005850 Rnf113a1 mRNA 69942 Prediction 0.1828 Rnf113a1 RAID02953008 mmu-miR-499-5p miRNA MIMAT0003482 Rnf113a1 mRNA 69942 Prediction 0.1828 Rnf113a1 RAID03589807 mmu-miR-495-3p miRNA MIMAT0003456 Rnf113a1 mRNA 69942 Prediction 0.1828