DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0003731 mmu-miR-671-5p 67116 Cuedc2 gaggucGGGGAG-GUCCCGAAGGa |: :|| ::|||||||| aguguuCUAUUCUUGGGGCUUCCu 2 18 91 114 [mm9:19:46405064-46405087:-] 0.5845 152 7 -25.31 -0.4886 MIMAT0003455 mmu-miR-679 67116 Cuedc2 ugGUUCUCAGUGGAGUGUCAgg |||||| |||||| uuCAAGAG------CACAGUaa 3 21 114 129 [mm9:19:46405049-46405064:-] 0.6059 121 0 -15.47 -0.1517 MIMAT0009397 mmu-miR-1933-3p 67116 Cuedc2 uaucagUGUGACUACC-AGGACc ||| || ||| ||||| -----gACAGUGCUGGAUCCUGc 2 17 1 18 [mm9:19:46405160-46405177:-] 0.5916 128 0 -17.04 -0.2288 MIMAT0009417 mmu-miR-1950 67116 Cuedc2 acugguauaggaaUCUACGUCu :||||||| gcugaucccagagGGAUGCAGa 2 10 27 48 [mm9:19:46405130-46405151:-] 0.5170 141 7 -18.18 -0.1359 MIMAT0009433 mmu-miR-1960 67116 Cuedc2 ucgggagAAGAUUG-UCGUGACc | ||: | ||||||| ugcuggaUCCUGCCGAGCACUGc 2 16 6 28 [mm9:19:46405150-46405172:-] 0.5170 146 7 -13.59 -0.3213 MIMAT0009459 mmu-miR-1982* 67116 Cuedc2 ggagggGUC-CUGGGAGGGUu ||| ||||||||| gggaugCAGACACCCUCCCAu 2 15 39 59 [mm9:19:46405119-46405139:-] 0.5137 153 7 -22.43 -0.2151 MIMAT0000555 mmu-miR-324-5p 67116 Cuedc2 ugUGGUUACGGGAUCCCCUACGc :|::|| ||| : ||||||| cuGCUGAU-CCCAGAGGGAUGCa 2 22 25 46 [mm9:19:46405132-46405153:-] 0.5170 159 7 -23.11 -0.4853 MIMAT0000559 mmu-miR-326 67116 Cuedc2 ugaccuccuucccGGGUCUCc ||||||| gagcacugcugauCCCAGAGg 2 9 20 40 [mm9:19:46405138-46405158:-] 0.5170 140 7 -21.05 -0.1612 MIMAT0004642 mmu-miR-330 67116 Cuedc2 cgGAUUCUG-UGUC-CGGGUCUCu | |: || :| | ||||||| gcCGAGCACUGCUGAUCCCAGAGg 2 21 17 40 [mm9:19:46405138-46405161:-] 0.5170 142 7 -23.02 -0.1659 MIMAT0000661 mmu-miR-214 67116 Cuedc2 ugacGGACAGACACG-GACGACa |||| | | || |||||| ggauCCUG-CCGAGCACUGCUGa 2 19 10 31 [mm9:19:46405147-46405168:-] 0.5170 124 6 -19.76 -0.2707 MIMAT0000663 mmu-miR-218 67116 Cuedc2 uguaccaaucuagUUCGUGUu :|||||| gggcuuccuucaaGAGCACAg 2 9 106 126 [mm9:19:46405052-46405072:-] 0.6059 124 6 -12.21 -0.1188

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G056871 Cuedc2 Mus musculus 67116

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Cuedc2 mmu-miR-326 beg:21 end:40 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& |||| || |||||||| &5' ACTGCT-GAT---CCCAGAGG 3' Cuedc2 mmu-miR-671-5p beg:97 end:115 pic:3' GAGGTCGGGGAGGTCCCGAAGGA 5'& ..| . ||||||||| &5' -------TTC-TTGGGGCTTCCT 3' Cuedc2 mcmv-miR-m59-1 beg:8 end:31 pic:3' GACTGC--CAGCTCCGTGACGATT 5'& ||. | ||| ||||||||.| &5' --GATCCTGCCGA-GCACTGCTGA 3' Cuedc2 mmu-miR-1186b beg:19 end:37 pic:3' CACCACGT-ACGGAAATTAGGGT 5'& ||| |||. .|||||| &5' -----GCACTGCT---GATCCCA 3' Cuedc2 mmu-miR-151-3p beg:67 end:93 pic:3' GGAGTTCCTC--GGAGTCAGATC 5'& |||. |||| |||. ||||| &5' CCTTCTGGAGGCCCTTGCTCTAG 3' Cuedc2 mmu-miR-186star beg:91 end:110 pic:3' GGGTTTTTTAAGT--GGAATCCCG 5'& .||| .|||.|||| &5' --------GTTCTATTCTTGGGGC 3' Cuedc2 mmu-miR-1950 beg:27 end:49 pic:3' ACTGGTATAGGAA--TCTACGTCT 5'& ||.| || .|||||||| &5' -GATC----CCAGAGGGATGCAGA 3' Cuedc2 mmu-miR-2137 beg:97 end:117 pic:3' GAGGGACCCCGAGGGCGGCCG 5'& |.|.|||||||.|| .| &5' -TTCTTGGGGCTTCCTTC--- 3' Cuedc2 mmu-miR-30c-2star beg:38 end:59 pic:3' TCTCATTTGTC-GGAAGAGGGTC 5'& |.| .||| | |||||| &5' -GGGAT-GCAGACACCCTCCCA- 3' Cuedc2 mmu-miR-324-5p beg:24 end:46 pic:3' TGTGGTTACGGGATC-CCCTACGC 5'& .| || ||| || ||||||| &5' --GCTGAT-CCC-AGAGGGATGC- 3' Cuedc2 mmu-miR-327 beg:97 end:120 pic:3' TAGGAGTA-CG--GGGAGTTCA 5'& ||.||.. || ||.||||| &5' ATTCTTGGGGCTTCCTTCAAG- 3' Cuedc2 mmu-miR-449c beg:11 end:30 pic:3' GGTCGATCGTTACGTGACGGA 5'& || || |.| |||||||. &5' CCTGC---CGA-GCACTGCT- 3' Cuedc2 mmu-miR-470 beg:121 end:143 pic:3' TGAGTGG-----TCACGGTCAGGTTCTT 5'& ||| |||| |||||||.| &5' ---CACAGTAAAAGTG---GTCCAAGGA 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Cuedc2 RAID00427702 mmu-miR-763 miRNA MIMAT0003896 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID00551033 mmu-miR-1249-5p miRNA MIMAT0014804 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID00644228 mmu-miR-3154 miRNA MIMAT0035714 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID00879928 mmu-miR-486a-3p miRNA MIMAT0017206 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID00978001 mmu-miR-7222-3p miRNA MIMAT0028413 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID01023310 mmu-miR-3075-3p miRNA MIMAT0014859 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID01105321 mmu-miR-218-5p miRNA MIMAT0000663 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID01215635 mmu-miR-326-5p miRNA MIMAT0017027 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID01518936 mmu-miR-298-3p miRNA MIMAT0017007 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID01777225 mmu-miR-505-3p miRNA MIMAT0003513 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID01779389 mmu-miR-7069-5p miRNA MIMAT0028044 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID01862501 mmu-miR-5107-5p miRNA MIMAT0020615 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID01874038 mmu-miR-214-3p miRNA MIMAT0000661 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID01895414 mmu-miR-378c miRNA MIMAT0025138 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID01963545 mmu-miR-486b-3p miRNA MIMAT0014944 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID02181090 mmu-miR-504-5p miRNA MIMAT0004889 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID02592808 mmu-miR-6954-5p miRNA MIMAT0027808 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID02757672 mmu-miR-544-3p miRNA MIMAT0004941 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID02793416 mmu-miR-6418-3p miRNA MIMAT0025174 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID02851332 mmu-miR-7035-3p miRNA MIMAT0027975 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID02924374 mmu-miR-330-5p miRNA MIMAT0004642 Cuedc2 mRNA 67116 Prediction 0.2202 Cuedc2 RAID03028980 mmu-miR-7018-5p miRNA MIMAT0027940 Cuedc2 mRNA 67116 Prediction 0.1828 Cuedc2 RAID03611981 mmu-miR-324-5p miRNA MIMAT0000555 Cuedc2 mRNA 67116 Prediction 0.2381 Cuedc2 RAID03738467 mmu-miR-326-3p miRNA MIMAT0000559 Cuedc2 mRNA 67116 Prediction 0.1828