DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Trim3; mCG_19734 ATTTA 165-2399 2564-2568 Trim3; mCG_19734 TTATTTATT 165-2399 2562-2570 Trim3; mCG_19734 WTATTTATW 165-2399 2562-2570 Trim3; mCG_19734 WWATTTAWW 165-2399 2562-2570

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004530 mmu-miR-127* 55992 Trim3 uagUCU-CGGGAGACUCGAAGUc :|| |: : | |||||||| caaGGAUGUGUGCAGAGCUUCAc 2 20 212 234 [mm9:7:112759338-112759360:-] 0.6782 150 7 -13.75 -0.1587 MIMAT0004531 mmu-miR-135a* 55992 Trim3 gcggugccgagguuaGGGAUAu |||||| acagcaauaccccacCCCUAUa 2 8 364 385 [mm9:7:112759187-112759208:-] 0.6649 120 6 -14.71 -0.2910 MIMAT0000154 mmu-miR-142-5p 55992 Trim3 ucaucaCGAAAGAUGAAAUAc | || | ||||||| ccccacGGUUGC-ACUUUAUu 2 16 148 167 [mm9:7:112759405-112759424:-] 0.6747 145 7 -5.65 -0.6373 MIMAT0000154 mmu-miR-142-5p 55992 Trim3 ucAUCACGAAAGAUGAAAUAc || | |||: |:||||| aaUAUUUAUUUUAAUUUUAUu 2 20 568 588 [mm9:7:112758984-112759004:-] 0.5017 143 0 -5.61 -0.1363 MIMAT0004580 mmu-miR-34c* 55992 Trim3 ggaccgacacaccaAUCACUaa |||||| guaucagcaacaagUAGUGAca 3 9 508 529 [mm9:7:112759043-112759064:-] 0.5256 120 0 -5.70 -0.1278 MIMAT0004581 mmu-miR-34b-3p 55992 Trim3 cuaccgucaccUCAAUCACUaa || |||||| uaucagcaacaAG-UAGUGAca 3 12 509 529 [mm9:7:112759043-112759063:-] 0.5256 121 0 -9.13 -0.1160 MIMAT0004635 mmu-miR-92a* 55992 Trim3 caUUACGGUGGUUA-GGGGUGGa |: | || |||| ||||||| acAGAGACAGCAAUACCCCACCc 2 21 358 380 [mm9:7:112759192-112759214:-] 0.6571 163 7 -22.94 -1.1370 MIMAT0000569 mmu-miR-330* 55992 Trim3 agagacguCCGGGACACGAAACg ||::|| ||||||| auuuauucGGUUCU-UGCUUUGg 2 16 165 186 [mm9:7:112759386-112759407:-] 0.6747 153 7 -17.19 -0.5160 MIMAT0004653 mmu-miR-342-5p 55992 Trim3 gaGUUAGUGUC--UAU--CGUGGGGa ||: |||| ||| |||||| gaCAGAGACAGCAAUACCCCACCCCu 2 21 357 382 [mm9:7:112759190-112759215:-] 0.6571 122 6 -20.47 -0.1370 MIMAT0000706 mmu-miR-362-5p 55992 Trim3 uaagugugGAUCCAAGGUUCCUAa || ||| |||||||| ggccuggaCU-GGUCCCAAGGAUg 2 17 197 219 [mm9:7:112759353-112759375:-] 0.7071 158 7 -21.48 -0.1972 MIMAT0004789 mmu-miR-450a-3p 55992 Trim3 uacuuacguuucGUAGGGGUUa | ||||||| ugcccuucccuuCCUCCCCAAc 2 11 127 148 [mm9:7:112759424-112759445:-] 0.6630 142 7 -10.99 -0.2159 MIMAT0003190 mmu-miR-291b-3p 55992 Trim3 uguUUGUUUUACCUACGUGAAa ||| | || ||||||| cccAACCCCACGGUUGCACUUu 2 20 143 164 [mm9:7:112759408-112759429:-] 0.6630 155 7 -12.72 -0.9923 MIMAT0003373 mmu-miR-302b* 55992 Trim3 ucuUUCGUAAGGGU-ACAAUUUCa |||:| | || | |||||| aacAAGUAGUGACAUUUUUAAAGa 2 21 516 539 [mm9:7:112759033-112759056:-] 0.5256 131 6 -9.29 -0.1864 MIMAT0003375 mmu-miR-302c* 55992 Trim3 cgUCCAUUGGGGU-ACAAUUUCg | |||:: || | |||||| acAAGUAGUGACAUUUUUAAAGa 2 21 517 539 [mm9:7:112759033-112759055:-] 0.5256 127 6 -11.99 -0.1847 MIMAT0003732 mmu-miR-668 55992 Trim3 ccaucacccggcucggcUCACUGu |||||| caguaucagcaacaaguAGUGACa 2 8 506 529 [mm9:7:112759043-112759066:-] 0.5256 120 6 -14.18 -0.1360 MIMAT0003896 mmu-miR-763 55992 Trim3 cgguGACCA-AG---AAGGGUC-GACc ||| | || ||||||| ||| caguCUGCUCUCUGAUUCCCAGCCUGg 2 19 267 293 [mm9:7:112759279-112759305:-] 0.6493 120 0 -24.66 -0.1193 MIMAT0003464 mmu-miR-686 55992 Trim3 agaaGUGGCAGACCCU-UCGUUa |||:| | | || ||||| uacaCACUGACAGAGACAGCAAu 2 19 349 371 [mm9:7:112759201-112759223:-] 0.6571 126 0 -13.50 -0.6121 MIMAT0005448 mmu-miR-467b 55992 Trim3 guauauGUACGUCCGUGAAug || | |||||| caacccCACGGUUGCACUUua 3 16 145 165 [mm9:7:112759407-112759427:-] 0.6630 123 0 -9.37 -0.1656 MIMAT0003742 mmu-miR-455 55992 Trim3 cacAUAUACGGGCACCUGACg |: :|| | ||||||| gacUGGGUGGGCCUGGACUGg 2 19 188 208 [mm9:7:112759364-112759384:-] 0.6909 150 7 -18.89 -0.1422 MIMAT0003742 mmu-miR-455 55992 Trim3 cacAUAUACGGGCACCUGAcg ||| | |: |||||| ugcUAUCU-ACUAUGGACUaa 3 19 457 476 [mm9:7:112759096-112759115:-] 0.5672 128 0 -9.65 -0.1059 MIMAT0003487 mmu-miR-697 55992 Trim3 agaggUGUCCUGG--UCCUACAa || || || ||||||| ccuggACUGGUCCCAAGGAUGUg 2 17 199 221 [mm9:7:112759351-112759373:-] 0.7071 151 7 -19.15 -0.3357 MIMAT0003492 mmu-miR-702 55992 Trim3 cucGCCCCAUUUCCCACCCGu | || |||: ||||||| gguCUGGCUAAGAGGUGGGCc 2 19 60 80 [mm9:7:112759492-112759512:-] 0.6527 162 7 -21.27 -0.1414 MIMAT0003492 mmu-miR-702 55992 Trim3 cucgccCCAUU-UCCCACCCGu |||:| |||||||| ugcuuuGGUGACUGGGUGGGCc 2 16 179 200 [mm9:7:112759372-112759393:-] 0.6909 154 7 -23.23 -0.1557 MIMAT0003512 mmu-miR-450b-3p 55992 Trim3 uacguacgUUUUACAAG-GGUUa || :||||| |||| auuaaauaAAUGUGUUCGCCAAg 2 15 385 407 [mm9:7:112759165-112759187:-] 0.6649 122 0 -12.46 -0.9526 MIMAT0004846 mmu-miR-881 55992 Trim3 agauaaGUCU-UUU-CUGUGUCAa |||| ||| |||||||| agaagaCAGACAAAUGACACAGUa 2 17 487 510 [mm9:7:112759062-112759085:-] 0.5464 162 7 -18.36 -0.9664 MIMAT0004856 mmu-miR-105 55992 Trim3 ugguguucguagacuCGUGAAcc |||||| cccaaccccacgguuGCACUUua 3 9 143 165 [mm9:7:112759407-112759429:-] 0.6630 120 0 -12.25 -0.1672 MIMAT0004897 mmu-miR-654-5p 55992 Trim3 ugUGUACAAGACGUCGAA-UGGu |::||| | | ||||| ||| ggAUGUGUGCAG-AGCUUCACCc 2 21 215 236 [mm9:7:112759336-112759357:-] 0.6782 126 0 -13.94 -0.3768 MIMAT0005830 mmu-miR-466l 55992 Trim3 uuaUACACACGU-ACAUAAAUAu | | |||| | ||||||| cccACGGUUGCACUUUAUUUAUu 2 20 149 171 [mm9:7:112759401-112759423:-] 0.6747 154 7 -7.90 -0.6860 MIMAT0005830 mmu-miR-466l 55992 Trim3 uuauacacACGUACAUAAAUAu | :| ||||||| ugucucauUUUAAAUAUUUAUu 2 15 556 577 [mm9:7:112758995-112759016:-] 0.5017 142 7 -3.05 -1.3261 MIMAT0005836 mmu-miR-1186 55992 Trim3 guacggaaauuaagGUCGUGAg ||||||| ugggccagacccggCAGCACUg 2 9 75 96 [mm9:7:112759476-112759497:-] 0.6520 140 7 -16.42 -0.1198 MIMAT0005852 mmu-miR-1194 55992 Trim3 uccuagaucgucaauGAGUAAg |||||| cuuuaauguuuuuguCUCAUUu 2 8 544 565 [mm9:7:112759007-112759028:-] 0.5017 120 6 -6.69 -0.2660 MIMAT0005853 mmu-miR-669e 55992 Trim3 uacuuGUACGUGUG--UGU-UCUGu :|| ||||| ||| |||| cacccUAUACACACUGACAGAGACa 2 18 342 366 [mm9:7:112759206-112759230:-] 0.6571 124 0 -14.96 -1.0500 MIMAT0009393 mmu-miR-1930 55992 Trim3 ugcGACGUCCAUGA-UACCUCCa |||| | :|| ||||||| gccCUGCUUG-GCUCAUGGAGGg 2 20 11 32 [mm9:7:112759540-112759561:-] 0.6630 152 7 -21.31 -0.7860 MIMAT0009402 mmu-miR-1938 55992 Trim3 cuGGCU-UGAUGUU-CAGGGUGGc | || || :||| |||||| gaCAGAGACAGCAAUACCCCACCc 2 21 357 380 [mm9:7:112759192-112759215:-] 0.6571 122 6 -17.62 -0.1892 MIMAT0009428 mmu-miR-1956 55992 Trim3 agGCGACUGA---GUCGGGACCUGa :| ||||| ::| ||||||| uuUGGUGACUGGGUGGGCCUGGACu 2 21 182 206 [mm9:7:112759366-112759390:-] 0.6909 155 7 -27.95 -0.1194 MIMAT0009433 mmu-miR-1960 55992 Trim3 ucgggagaaGAUUGUCGUGACc | ::|||||||| gggccagacCCGGCAGCACUGa 2 14 76 97 [mm9:7:112759475-112759496:-] 0.6520 149 7 -20.48 -0.2647 MIMAT0009435 mmu-miR-1962 55992 Trim3 uacacagGGUCACGGUCGGAGa |||| ||||||| ccuggggCCAG-AACAGCCUCu 2 16 289 309 [mm9:7:112759263-112759283:-] 0.6493 145 7 -23.46 -0.6735 MIMAT0009446 mmu-miR-1971 55992 Trim3 agaGUCGGGUCGGA-AAUg ||| |||||| ||| ggcCAGAACAGCCUCUUAc 2 16 294 312 [mm9:7:112759260-112759278:-] 0.6493 123 0 -19.42 -0.6361 MIMAT0009461 mmu-miR-1982.2 55992 Trim3 gaCACCCU-CUUGUAU-CCCACu | |||| |:||||| ||||| ugGAGGGACGGACAUAGGGGUGa 2 20 26 48 [mm9:7:112759524-112759546:-] 0.5965 138 0 -28.41 -0.9066 MIMAT0012772 mmu-miR-599 55992 Trim3 caaaCUAUUUGACUGUGUu || ||| ||||||| gacaGACAAA-UGACACAg 2 16 491 508 [mm9:7:112759064-112759081:-] 0.5464 153 7 -12.53 -0.9466 MIMAT0000141 mmu-miR-130a 55992 Trim3 uacgggaaaauUG-UAACGUGAc || :||||||| uccccaaccccACGGUUGCACUu 2 12 141 163 [mm9:7:112759409-112759431:-] 0.6630 142 7 -14.58 -0.6171 MIMAT0000149 mmu-miR-137 55992 Trim3 gaugcgcauaagaauUCGUUAUu ||||||| cacacugacagagacAGCAAUAc 2 9 351 373 [mm9:7:112759199-112759221:-] 0.6571 140 7 -6.10 -0.3802 MIMAT0000220 mmu-miR-190 55992 Trim3 ugGAUUAUAUAGUUUGU-AUAGu | :| | || | ||| |||| gaCAGACAAAUGACACAGUAUCa 2 21 491 513 [mm9:7:112759059-112759081:-] 0.5464 120 0 -8.11 -0.9984 MIMAT0000236 mmu-miR-203 55992 Trim3 gaUCACCAGGAU-UUGUAAAGUg | || |::|: |||||:| uuAAUGUUUUUGUCUCAUUUUAa 2 21 546 568 [mm9:7:112759004-112759026:-] 0.5017 131 0 -8.58 -0.1466 MIMAT0000379 mmu-miR-301a 55992 Trim3 cgaaacUGUUAUGAUAACGUGAc || || :||||||| uccccaACCCCACGGUUGCACUu 2 18 141 163 [mm9:7:112759409-112759431:-] 0.6630 149 7 -11.65 -0.6061 MIMAT0000385 mmu-miR-106a 55992 Trim3 gaUGGACGUGACAAUCGUGAAAc ||| ||| ||| ||||||| caACC-CCACGGUU-GCACUUUa 2 22 145 165 [mm9:7:112759407-112759427:-] 0.6630 161 7 -16.77 -1.1993 MIMAT0000386 mmu-miR-106b 55992 Trim3 uagacGUGACAGUCGUGAAAu ||| ||: ||||||| aacccCACGGUU-GCACUUUa 2 17 146 165 [mm9:7:112759407-112759426:-] 0.6747 154 7 -15.71 -1.2097 MIMAT0000387 mmu-miR-130b 55992 Trim3 uacgggaaaGUAGUAACGUGAc || :||||||| ccccaacccCACGGUUGCACUu 2 14 142 163 [mm9:7:112759409-112759430:-] 0.6630 145 7 -15.13 -0.6098 MIMAT0000529 mmu-miR-20a 55992 Trim3 gaUGGACGUGAUAUUCGUGAAAu ||| ||| :| ||||||| caACC-CCACGGU-UGCACUUUa 2 22 145 165 [mm9:7:112759407-112759427:-] 0.6630 149 7 -16.85 -1.2128 MIMAT0000540 mmu-miR-93 55992 Trim3 gaUGGACGUGCUUGUCGUGAAAc ||| |||| :: ||||||| caACC-CCACG-GUUGCACUUUa 2 22 145 165 [mm9:7:112759407-112759427:-] 0.6630 153 7 -19.79 -1.2098 MIMAT0000649 mmu-miR-17 55992 Trim3 gaUGGACGUGACAUUCGUGAAAc ||| ||| || ||||||| caACC-CCACGGU-UGCACUUUa 2 22 145 165 [mm9:7:112759407-112759427:-] 0.6630 153 7 -15.30 -1.2113 MIMAT0003128 mmu-miR-485 55992 Trim3 cuuaaguagugccgGUCGGAGa ||||||| gccuggggccagaaCAGCCUCu 2 9 288 309 [mm9:7:112759263-112759284:-] 0.6493 140 7 -18.79 -0.6847 MIMAT0003187 mmu-miR-20b 55992 Trim3 gaUGGACGUGAUACUCGUGAAAc ||| ||| :| ||||||| caACC-CCACGGU-UGCACUUUa 2 22 145 165 [mm9:7:112759407-112759427:-] 0.6630 149 7 -14.35 -1.2128 MIMAT0004186 mmu-miR-301b 55992 Trim3 cgaaacUGUUAUGGUAACGUGAc || || :||||||| uccccaACCCCACGGUUGCACUu 2 18 141 163 [mm9:7:112759409-112759431:-] 0.6630 149 7 -12.96 -0.6061 MIMAT0003515 mmu-miR-721 55992 Trim3 aagGGGGAAAAUUAACGUGAc |||| ::||||||| caaCCCC--ACGGUUGCACUu 2 19 145 163 [mm9:7:112759409-112759427:-] 0.6630 143 7 -18.89 -0.6024

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G057499 Trim3 Mus musculus 55992 19536157 0 0 R53462; MOUSE$TRIM3_01; Binding factors: mmu-miR-106a-5p , mmu-miR-106b-5p , mmu-miR-17-5p , mmu-miR-20a-5p , mmu-miR-20b-5p , mmu-miR-290a-3p , mmu-miR-291a-3p , mmu-miR-291b-3p , mmu-miR-292a-3p , mmu-miR-294-3p , mmu-miR-295-3p , mmu-miR-93-5p // 0 0 R53464; MOUSE$TRIM3_02; Binding factors: mmu-miR-130a-3p , mmu-miR-130b-3p , mmu-miR-19a-3p , mmu-miR-19b-3p , mmu-miR-301a-3p , mmu-miR-301b-3p , mmu-miR-721 // 0 0 R53465; MOUSE$TRIM3_03; Binding factors: mmu-miR-28a-5p , mmu-miR-708-5p

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Trim3 mmu-miR-26bstar beg:290 end:305 pic:3' CTCGGTTCATTACCTCTTGTCC 5'& |.||| ||||||| &5' GGGCC---------AGAACAG- 3' Trim3 mmu-miR-362-5p beg:202 end:219 pic:3' TAAGTGTGGATCCAAGGTTCCTAA 5'& || ||| |||||||| &5' --------CT-GGTCCCAAGGAT- 3' Trim3 mmu-miR-1962 beg:290 end:310 pic:3' TACACAGGGTCACGGTCGGAGA 5'& | |||| |||||||| &5' ----GGGCCAGAA-CAGCCTCT 3' Trim3 mmu-miR-92astar beg:362 end:380 pic:3' CATTACGGTGGTTA-GGGGTGGA 5'& || |||| ||||||| &5' -------CAGCAATACCCCACC- 3' Trim3 mmu-miR-1905 beg:191 end:210 pic:3' GATGGCGCACCAC--CCTGACCAC 5'& | |||| |||||||| &5' -----GGGTGGGCCTGGACTGGT- 3' Trim3 mmu-miR-106b beg:148 end:166 pic:3' TAGACGTGACAGTCGTGAAAT 5'& ||| ||. |||||||| &5' -----CACGGTT-GCACTTTA 3' Trim3 mmu-miR-702 beg:62 end:80 pic:3' CTCGCCCCATTTC-CCACCCGT 5'& || ||| ||||||| &5' ------GGCTAAGAGGTGGGC- 3' Trim3 mcmv-miR-m01-3 beg:213 end:236 pic:3' AGCTCCGT-TGTCAGCGAAGTGGC 5'& || |.. .||| |||||||| &5' --GATGTGTGCAGA-GCTTCACC- 3' Trim3 mcmv-miR-m108-2-5p.1 beg:174 end:193 pic:3' GCCACGAGCGCAGCTCACTGGCG 5'& ||.|| |.| |||||.| &5' -----CTTGCTTTG-GTGACTG- 3' Trim3 mmu-let-7a beg:298 end:317 pic:3' TTGATATGTTGGATGATGGAGT 5'& |||.||| .|||.||| &5' ------ACAGCCTCTTACTTCA 3' Trim3 mmu-let-7b beg:298 end:317 pic:3' TTGGTGTGTTGGATGATGGAGT 5'& |||.||| .|||.||| &5' ------ACAGCCTCTTACTTCA 3' Trim3 mmu-let-7c beg:298 end:317 pic:3' TTGGTATGTTGGATGATGGAGT 5'& |||.||| .|||.||| &5' ------ACAGCCTCTTACTTCA 3' Trim3 mmu-let-7f beg:298 end:317 pic:3' TTGATATGTTAGATGATGGAGT 5'& ||| || .|||.||| &5' ------ACAGCCTCTTACTTCA 3' Trim3 mmu-let-7g beg:296 end:317 pic:3' TTGACATGTTTGATGATGGAGT 5'& | |||. || .|||.||| &5' ----GAACAGCCTCTTACTTCA 3' Trim3 mmu-let-7gstar beg:209 end:227 pic:3' CGTTCCGTCACCGGACATGTCA 5'& ||||| . |||.||| &5' -CAAGGA-----TGTGTGCAG- 3' Trim3 mmu-miR-106a beg:144 end:165 pic:3' GATGGACGTGACAATCGTGAAAC 5'& ||| ||| ||| ||||||| &5' --ACCC-CACGGTT-GCACTTT- 3' Trim3 mmu-miR-1188 beg:239 end:265 pic:3' AGGACC-----GGGTTGGAGTGTGGT 5'& ||| ||| |||.||||| &5' -CCTTTACACACCCC-CCTTACACC- 3' Trim3 mmu-miR-1188 beg:274 end:299 pic:3' AGGACC--GGGTTGGAGTGTGGT 5'& .||| ||||.||| . .||| &5' -TCTGATTCCCAGCCTGGGGCCA 3' Trim3 mmu-miR-1194 beg:151 end:173 pic:3' TCCTAGATCGTC-AATGAGTAAG 5'& || ||| |||.|.|||| &5' -GGTT---GCACTTTATTTATTC 3' Trim3 mmu-miR-1224 beg:130 end:154 pic:3' GAGGT--GGAGGGGTCAGGAGTG 5'& ||| |||||||| || ||| &5' -TCCCTTCCTCCCCAACCC-CAC 3' Trim3 mmu-miR-127star beg:311 end:335 pic:3' TAGTC-TC-GGGAGACTCGA-AGTC 5'& |||| || ||||||| |.| || &5' -TCAGAAGTCCCTCTG-GTTGTC-- 3' Trim3 mmu-miR-135astar beg:329 end:351 pic:3' GCGGTGCCGA-GGTTAGGGATAT 5'& |.| || ||| ||||||| &5' -GTCTCC-CTACCA--CCCTATA 3' Trim3 mmu-miR-138star beg:466 end:486 pic:3' GGGACCACAACACTTCATCGGC 5'& ||| ||||||.| &5' ---TGGACTAAA-AAGTAGTC- 3' Trim3 mmu-miR-146b beg:158 end:180 pic:3' TCGGATACCTTAAGTCAAGAGT 5'& |.| ||||.|||||. &5' --CTTTATTTATTCGGTTCTT- 3' Trim3 mmu-miR-151-3p beg:253 end:274 pic:3' GGAGTTCCTCGGAGTCAGATC 5'& |||.| |||||||||. &5' CCTTACAC--CCTCAGTCTG- 3' Trim3 mmu-miR-17 beg:144 end:165 pic:3' GATGGACGTGACATTCGTGAAAC 5'& ||| ||| || ||||||| &5' --ACCC-CACGGTT-GCACTTT- 3' Trim3 mmu-miR-181a beg:81 end:102 pic:3' TGAGTGGCTGTCGCAACTTACAA 5'& | |||.|||| ||||||| &5' ---C-CCGGCAGCACTGAATGT- 3' Trim3 mmu-miR-181b beg:81 end:102 pic:3' TGGGTGGCTGTCGTTACTTACAA 5'& | |||.||||| ||||||| &5' ---C-CCGGCAGCACTGAATGT- 3' Trim3 mmu-miR-181c beg:81 end:102 pic:3' TGAGTGGCTGTCCA-ACTTACAA 5'& | |||.||| ||||||| &5' ---C-CCGGCAGCACTGAATGT- 3' Trim3 mmu-miR-181d beg:81 end:102 pic:3' TGGGTGGCTGTTGTTACTTACAA 5'& | |||.||.|| ||||||| &5' ---C-CCGGCAGCACTGAATGT- 3' Trim3 mmu-miR-1839-3p beg:418 end:439 pic:3' CGACAACCATCTA---TTCATCCAGA 5'& ||| ..||.||||| &5' ------GGTTCTTGTGGGGTGGGTCT 3' Trim3 mmu-miR-1896 beg:343 end:365 pic:3' GAGGA-GTGGGTGGTAGTCTCTC 5'& ||| .|| |||.. |||||| &5' --CCTATACACACTGACAGAGA- 3' Trim3 mmu-miR-18a beg:148 end:166 pic:3' GATAGACGTGATCTACGTGGAAT 5'& ||| .| |||||.||| &5' -------CAC-GGTTGCACTTTA 3' Trim3 mmu-miR-18b beg:143 end:166 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& ||| ||| .| |||||.||| &5' --AACCCCAC-GGTTGCACTTTA 3' Trim3 mmu-miR-1906 beg:7 end:28 pic:3' TCGGGACGGAGTCCGACGACGT 5'& .|||||||.| |||| || &5' GGCCCTGCTT--GGCTCATG-- 3' Trim3 mmu-miR-1930 beg:11 end:32 pic:3' TGCGACGTCCATGA-TACCTCCA 5'& |||| .|| ||||||| &5' ---CTGCTTG-GCTCATGGAGG- 3' Trim3 mmu-miR-1955 beg:275 end:297 pic:3' TTTTCGACGTCACGTAGGACCCTGA 5'& ||| || ||||||.| &5' -----CTGATTCCCAGCCTGGGGC- 3' Trim3 mmu-miR-1956 beg:184 end:207 pic:3' AGGCGACTGAGTCG---GGACCTGA 5'& | ||||| .|. |||||||| &5' ---GGTGACTGGGTGGGCCTGGACT 3' Trim3 mmu-miR-1956 beg:272 end:297 pic:3' AGGCGACTGAG--TCGGGACCTGA 5'& .| ||||.|| ||||. ||.| &5' -TCTCTGATTCCCAGCCTGGGGC- 3' Trim3 mmu-miR-1960 beg:74 end:97 pic:3' TCGGGAGAAGATTGTCGTGACC 5'& .||| | .|||||||| &5' GGCCAGAC-CCGGCAGCACTG- 3' Trim3 mmu-miR-1982.1 beg:181 end:199 pic:3' GACACCCTCTTGTATCCCACTCT 5'& ||| .|| |||||.| &5' ---TGGT--GACT--GGGTGGG- 3' Trim3 mmu-miR-19astar beg:212 end:231 pic:3' CATCACGTTGATACGTTTTGAT 5'& | | |.||||.|.|| &5' -----GGATGTGTGCAGAGCT- 3' Trim3 mmu-miR-20a beg:144 end:166 pic:3' GATGGACGTGATATTCGTGAAAT 5'& ||| ||| |||||||| &5' --ACCC-CACGGTT-GCACTTTA 3' Trim3 mmu-miR-20b beg:144 end:165 pic:3' GATGGACGTGATACTCGTGAAAC 5'& ||| ||| ||||||| &5' --ACCC-CACGGTT-GCACTTT- 3' Trim3 mmu-miR-2134 beg:195 end:217 pic:3' CGTGGGGCAA---AGGGTTCTG 5'& | .||. | |||||||. &5' GGGCCTGGACTGGTCCCAAGG- 3' Trim3 mmu-miR-221 beg:81 end:107 pic:3' CTTTGGGTCGTC-TG--TTACA-TCGA 5'& .||||.|||| || ||||| .||| &5' --GACCCGGCAGCACTGAATGTGGGCT 3' Trim3 mmu-miR-223 beg:347 end:361 pic:3' ACCCCATAAACTGTTTGACTGT 5'& ||| ||||||| &5' -----------ACACACTGACA 3' Trim3 mmu-miR-291a-5p beg:170 end:189 pic:3' TCTCTCCCGGAGGTGAAACTAC 5'& ||. . |||||.|| &5' ------GGTTCTTGCTTTGGTG 3' Trim3 mmu-miR-291b-3p beg:151 end:165 pic:3' TGTTTGTTTTACCTACGTGAAA 5'& || |||||||| &5' -----------GGTTGCACTTT 3' Trim3 mmu-miR-328 beg:277 end:300 pic:3' TGCCTTCCCGTCTC-TCCCGGTC 5'& || ||| .||||||| &5' ---GATTCCCAGCCTGGGGCCAG 3' Trim3 mmu-miR-330star beg:170 end:186 pic:3' AGAGACGTCCGGGACACGAAACG 5'& ||..|| ||||||| &5' --------GGTTCT-TGCTTTG- 3' Trim3 mmu-miR-376astar beg:18 end:42 pic:3' TGAGTATCTTCCT-CTTAGATGG 5'& .|||||.||.||| |.| || &5' GCTCATGGAGGGACGGACATA-- 3' Trim3 mmu-miR-383 beg:264 end:284 pic:3' TCGGTGTCAG-TGGAAGACTAGA 5'& | ||||| .| ||||||. &5' ---CTCAGTCTGCTCTCTGATT- 3' Trim3 mmu-miR-412 beg:28 end:49 pic:3' GCCGATCACCTGG---TCCACTT 5'& || |||| .||||| &5' -GGAC---GGACATAGGGGTGA- 3' Trim3 mmu-miR-423-5p beg:117 end:135 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& .|| | |||||.|| &5' -------TGCCCAGTGCCCTTC- 3' Trim3 mmu-miR-432 beg:268 end:289 pic:3' GACGGGTGACTAGATGAGGTTCT 5'& ||||.| |||||. | |||. &5' CTGCTCTCTGATT--C-CCAG-- 3' Trim3 mmu-miR-450b-3p beg:269 end:289 pic:3' TACGTACGTTTTAC-AAGGGTTA 5'& ||| || ||||||. &5' -----TGCTCTCTGATTCCCAG- 3' Trim3 mmu-miR-465b-3p beg:267 end:284 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||.|| |.|||||. &5' TCTGCT--------CTCTGATT 3' Trim3 mmu-miR-465b-5p beg:554 end:572 pic:3' GTCTAGTCGTGGTAAGATTTAT 5'& |. ||||.|||||| &5' -------GTCTCATTTTAAATA 3' Trim3 mmu-miR-465c-3p beg:267 end:284 pic:3' AGATGAATCTTTCCGGGACTAG 5'& |||.|| |.|||||. &5' TCTGCT--------CTCTGATT 3' Trim3 mmu-miR-465c-5p beg:554 end:572 pic:3' GTCTAGTCGCGGTAAGATTTAT 5'& |. .||||.|||||| &5' -------GTCTCATTTTAAATA 3' Trim3 mmu-miR-470 beg:196 end:218 pic:3' TGAGTGGTCACGGTCA-GGTTCTT 5'& .|| | | || |||||.| &5' ----GCCTGGACTGGTCCCAAGGA 3' Trim3 mmu-miR-483star beg:17 end:49 pic:3' TTCTGC---CCTCCCC-------TCCTCACT 5'& |.| |||||| |||.|||| &5' --GGCTCATGGAGGGACGGACATAGGGGTGA 3' Trim3 mmu-miR-488 beg:291 end:312 pic:3' CTGGTTCTTTGTCGGAAAGTT 5'& |.||| .|||||||| |.| &5' GGCCA--GAACAGCCTCTTA- 3' Trim3 mmu-miR-490 beg:404 end:424 pic:3' GTCGTACCTCAGGA--GGTCCAAC 5'& || ||.. |.||||| &5' ------GGTGTTTTTGCTAGGTT- 3' Trim3 mmu-miR-541 beg:301 end:326 pic:3' TCACACTGGT---TGTAGTC-TTAGGGAA 5'& .|| || |||| |.||||| &5' ------GCCTCTTACTTCAGAAGTCCCT- 3' Trim3 mmu-miR-592 beg:498 end:510 pic:3' TGTAGTAGCGTATAACTGTGTTA 5'& |||||||.| &5' --------------TGACACAGT 3' Trim3 mmu-miR-599 beg:488 end:509 pic:3' CAAACTATTTG---ACTGTGTT 5'& || |.|| |||||||. &5' ----GACAGACAAATGACACAG 3' Trim3 mmu-miR-669j beg:212 end:226 pic:3' ACAAACGTACACTCATATACGT 5'& | |.|.|||| &5' -----------GGATGTGTGCA 3' Trim3 mmu-miR-694 beg:521 end:536 pic:3' GAAGTCCGTTGTAAAAGTC 5'& | |||||||.| &5' ------GTGACATTTTTA- 3' Trim3 mmu-miR-697 beg:199 end:221 pic:3' AGAGGTGTCCTGG--TCCTACAA 5'& || || || || ||||||| &5' -CTGGACTGGTCCCAAGGATGT- 3' Trim3 mmu-miR-702 beg:413 end:438 pic:3' CTCGCCCCATT----TCCCACCCGT 5'& || ||| .|||||||. &5' --GCTAGGTTCTTGTGGGGTGGGT- 3' Trim3 mmu-miR-702 beg:177 end:200 pic:3' CTCGCC-CCATTT-CCCACCCGT 5'& || |||.| |||||||| &5' --GCTTTGGTGACTGGGTGGGC- 3' Trim3 mmu-miR-705 beg:328 end:347 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& ||.|. |||.||| ||| &5' TGTCT-CCCTACCACCC--- 3' Trim3 mmu-miR-705 beg:364 end:385 pic:3' ACGG-GTGGGGTGGAGGGTGG 5'& || .|||||||| ||.|. &5' -GCAATACCCCACC-CCTAT- 3' Trim3 mmu-miR-708star beg:313 end:333 pic:3' GATCTTCGAGTGTCAGATCAAC 5'& ||||| | | |||.|||| &5' --AGAAGTCC-C--TCTGGTTG 3' Trim3 mmu-miR-760 beg:208 end:231 pic:3' AGGGGTGTCTGG----GTCTCGGC 5'& .|||| .||. ||||||. &5' -TCCCAAGGATGTGTGCAGAGCT- 3' Trim3 mmu-miR-876-5p beg:306 end:324 pic:3' ATCACTAAGTGTC-TCTTTAGGT 5'& |.|| ||||.||| &5' -------TTACTTCAGAAGTCC- 3' Trim3 mmu-miR-880 beg:435 end:456 pic:3' AGATGAGTCTCTCCTACCTCAT 5'& ||| || || ||||||| &5' ----CTCTGAAGGGTTGGAGTA 3' Trim3 mmu-miR-881 beg:490 end:510 pic:3' AGATAAGTCT-TTT-CTGTGTCAA 5'& |||| ||| |||||||| &5' ------CAGACAAATGACACAGT- 3' Trim3 mmu-miR-92astar beg:326 end:343 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& |. .| ||||.||| &5' -----GTTGTC--TCCCTACC- 3' Trim3 mmu-miR-93 beg:144 end:165 pic:3' GATGGACGTGCTTGTCGTGAAAC 5'& ||| ||||. ||||||| &5' --ACCC-CACGGTT-GCACTTT- 3' Trim3 mmu-miR-96 beg:209 end:231 pic:3' TCGTTTTTACACGA-TCACGGTTT 5'& |||..|||||. || ||. &5' --CAAGGATGTGTGCAGAGCT--- 3' Trim3 mmu-miR-98 beg:298 end:317 pic:3' TTGTTATGTTGAATGATGGAGT 5'& |||.| .|||.||| &5' ------ACAGCCTCTTACTTCA 3' Trim3 mmu-miR-130a beg:145 end:163 pic:3' TACGGGAAAATTGTAACGTGAC 5'& ||| .||||||| &5' ---CCCCACG---GTTGCACT- 3' Trim3 mmu-miR-130b beg:145 end:163 pic:3' TACGGGAAAGTAGTAACGTGAC 5'& ||| || .||||||| &5' ---CCC---CACGGTTGCACT- 3' Trim3 mmu-miR-721 beg:145 end:163 pic:3' AAGGGGGAAAATTAACGTGAC 5'& |||| ..||||||| &5' --CCCCAC---GGTTGCACT- 3' Trim3 mmu-miR-301a beg:149 end:163 pic:3' CGAAACTGTTATGATAACGTGAC 5'& || .||||||| &5' -----------ACGGTTGCACT- 3' Trim3 mmu-miR-301b beg:149 end:163 pic:3' CGAAACTGTTATGGTAACGTGAC 5'& || .||||||| &5' -----------ACGGTTGCACT- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Trim3; mCG_19734 mmu-let-7a 300 318 UGAUAUGUUGGAUGAUGGAGU- |||:||| :|||:||| ----AACAGCCUCUUACUUCAG Trim3; mCG_19734 mmu-let-7b 293 318 -UUGGUG-UGUUGGAUGAUGGAGU- ::||| |||:||| :|||:||| GGGCCAGAACAGCCUCUUACUUCAG Trim3; mCG_19734 mmu-let-7c 293 318 -UUGGUA-UGUUGGAUGAUGGAGU- ::||| |||:||| :|||:||| GGGCCAGAACAGCCUCUUACUUCAG Trim3; mCG_19734 mmu-let-7e 300 318 UGAUAUGUUGGAGGAUGGAGU- |||:||||:|||:||| ----AACAGCCUCUUACUUCAG Trim3; mCG_19734 mmu-miR-106a 146 166 AUGGACGUGACAAUCGUGAAAC ||| ||| ||| ||||||| AACCC-CACGGUU-GCACUUUA Trim3; mCG_19734 mmu-miR-10a 163 198 -GUGUUUAAGCCUAGA----------UGUCCCAU- :|: |||||| ||| || ||||: UUAUUUAUUCGGUUCUUGCUUUGGUGACUGGGUGG Trim3; mCG_19734 mmu-miR-124a 102 125 -CCG-UAA--GUGGC-GCACGGAAU ||| || ||| | :||||| GGGCUAUGGGCACGGGUGUGCCC-- Trim3; mCG_19734 mmu-miR-125a 417 449 GUGUCCAAUUU-------CCCAGAG---UCCCU :||||| ||||||| |||| -CUAGGUUCUUGUGGGGUGGGUCUCUGAAGGGU Trim3; mCG_19734 mmu-miR-125b 428 449 AGUGUUCAAUCCCAGAG---UCCCU ::| ||||||| |||| ---UGGGGU-GGGUCUCUGAAGGGU Trim3; mCG_19734 mmu-miR-129-3p 407 451 -UACGAAAA------------ACCCCAU---------UCCCGAA :||:|||| ||||||: ||||:| GGUGUUUUUGCUAGGUUCUUGUGGGGUGGGUCUCUGAAGGGUUG Trim3; mCG_19734 mmu-miR-130a 125 164 -UACGGGAAAAUU-G---------------UAACGUGAC :||||||| | :||||||| AGUGCCCUUCCCUUCCUCCCCAACCCCACGGUUGCACUU Trim3; mCG_19734 mmu-miR-130b 125 164 -UACGGGA----AAGUAG------------UAACGUGAC :|||||| ||| || :||||||| AGUGCCCUUCCCUUCCUCCCCAACCCCACGGUUGCACUU Trim3; mCG_19734 mmu-miR-133a 59 84 UGUC-GACCAAC-UUCC-CCUGGUU- :| |||| :||| ||:|||: -GGGUCUGGCUAAGAGGUGGGCCAGA Trim3; mCG_19734 mmu-miR-133b 59 84 AUC-GACCAAC-UUCC-CCUGGUU- :| |||| :||| ||:|||: GGGUCUGGCUAAGAGGUGGGCCAGA Trim3; mCG_19734 mmu-miR-138 503 517 CUAAGUGUUGUGGUCGA ||||::|:|||| ---ACACAGUAUCAGCA Trim3; mCG_19734 mmu-miR-140* 172 190 AGGCACCAAGAUGGGACACCAU- |||||| |:| ||||: ----CGGUUCUUGCUU-UGGUGA Trim3; mCG_19734 mmu-miR-145 27 56 -UUCCCUAA--GGA-CCCUUUUGACCUG- :||||| | ||| :|:||||| GGAGGGACGGACAUAGGGGUGAUUGGACA Trim3; mCG_19734 mmu-miR-149 41 85 -CCUCACU--UCUGUG---CC---------------UCGGUCU ||:|||| :|||| || :|||||| AGGGGUGAUUGGACAAGAGGGUCUGGCUAAGAGGUGGGCCAGAC Trim3; mCG_19734 mmu-miR-151 255 275 -GGAGUUCCUCGGAGUCAGAUC |||:| |||||||||: CCCUUACAC--CCUCAGUCUGC Trim3; mCG_19734 mmu-miR-181a 77 103 -UGAGU---GGCUGUCGCAACUUACAA :| || |||:|||| ||||||| GGC-CAGACCCGGCAGCACUGAAUGUG Trim3; mCG_19734 mmu-miR-181b 78 103 GGGU---GGCUGUCGUUACUUACAA ||| |||:||||| ||||||| GCCAGACCCGGCAGCACUGAAUGUG Trim3; mCG_19734 mmu-miR-181c 77 103 -UGAGU---GGCUGUCCA-ACUUACAA :| || |||:||| ||||||| GGC-CAGACCCGGCAGCACUGAAUGUG Trim3; mCG_19734 mmu-miR-181d 76 103 -UUGGGU--GGCUGUUGUUACUUACAA ::|| |||:||:|| ||||||| GGGCCAGACCCGGCAGCACUGAAUGUG Trim3; mCG_19734 mmu-miR-183 115 132 GUCACUUAAGAUGGUCACGGUAU :||| |||||||| GGGUGUGC----CCAGUGCCC-- Trim3; mCG_19734 mmu-miR-184 254 287 UGGGAAU-----AGUCA----AGAGGC--AGGU |||||| ||||| ||||:| ||| CCCCUUACACCCUCAGUCUGCUCUCUGAUUCCC Trim3; mCG_19734 mmu-miR-185 298 318 -CUUGACGGAAAGAGAGGU- |||| |||| |: ||:|| AGAACAGCCUCUUACUUCAG Trim3; mCG_19734 mmu-miR-187 84 118 -GGCCGACGU--------UGUGU--UCUGUGCU- ||||| ||| : :| :|:||||: CCCGGCAGCACUGAAUGUGGGCUAUGGGCACGGG Trim3; mCG_19734 mmu-miR-188 10 35 -UGGGA-GG--UG-GUACGUUCCCUAC :|||| |: :| |||| :||||| GGCCCUGCUUGGCUCAUG-GAGGGAC- Trim3; mCG_19734 mmu-miR-193 183 204 GACC-CUGAAACAUCCGGUCAA ||| |||| ||:|||| | UUGGUGACUGGGUGGGCCUGG- Trim3; mCG_19734 mmu-miR-204 34 63 GUCC-GUAUCCUA------CUG-UUUCCCUU || ||||||: ||| |:|||| -CGGACAUAGGGGUGAUUGGACAAGAGGGU- Trim3; mCG_19734 mmu-miR-205 417 449 -GUCUGAGG-----CCACCUU---ACUUCCU- :||::||: |||||: ||||||: CUAGGUUCUUGUGGGGUGGGUCUCUGAAGGGU Trim3; mCG_19734 mmu-miR-207 56 94 -CUCCC----------UCCUCUCGGUCC---UCUUCG- ||||| ||| |:||||| :| ||| AGAGGGUCUGGCUAAGAGGUGGGCCAGACCCGGCAGCA Trim3; mCG_19734 mmu-miR-211 19 47 UCCG-----UUUCCUA-CUGUUUCCCUU ||| :|:||| |||| ||||: UGGCUCAUGGAGGGACGGACAUAGGGGU Trim3; mCG_19734 mmu-miR-212 179 209 CCGG---CACUGACC--------UCUGACAAU ||: |||||||| :||||| UGCUUUGGUGACUGGGUGGGCCUGGACUGG-- Trim3; mCG_19734 mmu-miR-214 178 209 GACGG----ACAGACA----CGGAC--GACA |||: || ||| ||||| ||| UUGCUUUGGUGACUGGGUGGGCCUGGACUGG Trim3; mCG_19734 mmu-miR-221 80 108 -UUUGGGUCGUC-UG--UUACAUC-GA- |:||||:|||| || |||||:| || CAGACCCGGCAGCACUGAAUGUGGGCUA Trim3; mCG_19734 mmu-miR-222 80 108 CUCUGGGUCAUCG-GUC-UACAUC-GA- ||||||:| ||| | | ||||:| || CAGACCCGGCAGCACUGAAUGUGGGCUA Trim3; mCG_19734 mmu-miR-24 173 199 GACAAGGACGAC----UUGACUCGGU- ||||:|||| :||||:|: : -GGUUCUUGCUUUGGUGACUGGGUGGG Trim3; mCG_19734 mmu-miR-24* 92 116 -UGAC-UAUAGUCGAGUCAUCCGUG- |||| ||:| :||| |:||||| CACUGAAUGUGGGCUA--UGGGCACG Trim3; mCG_19734 mmu-miR-292-3p 77 97 UGUGAGUUUUGGACCGCCGUGAA :| | |:||| ||| ||||| -GGC-C-AGACCCGGCAGCACUG Trim3; mCG_19734 mmu-miR-292-5p 433 456 GUUUUCUCGGGGG----UCAAACUCA- |:|:|:|: :||| |||| ----UGGGUCUCUGAAGGGUUGGAGUA Trim3; mCG_19734 mmu-miR-296 417 441 UGUCCU--AACUCCCC-CCCGGGA :||| ||| |||| |||:|: CUAGGUUCUUGUGGGGUGGGUCUC Trim3; mCG_19734 mmu-miR-298 292 330 -CCU--UCUUGUCGG-GA-------------GGAGACGG ||: ||||||||| || |||||| GGGGCCAGAACAGCCUCUUACUUCAGAAGUCCCUCUGG- Trim3; mCG_19734 mmu-miR-29b 89 109 -UUGUGACUAAAGUUUACCACGAU- |:|||||| :||| |||| CAGCACUGAAU----GUGG-GCUAU Trim3; mCG_19734 mmu-miR-302 65 97 AGUGGUUUUGUACCU-----------UCGUGAAU :|:||:| :|||: |||||| -GGCUAAGAGGUGGGCCAGACCCGGCAGCACUG- Trim3; mCG_19734 mmu-miR-302c 91 121 GGUGACUUUGUACCU-----UCGUGA--AC- ||||||| ::|||: :|||| || GCACUGAA-UGUGGGCUAUGGGCACGGGUGU Trim3; mCG_19734 mmu-miR-302d 90 116 -UGUGAGUUUGUACCU-----UCGUGAA :|||| :||::|||: :|||| AGCACU-GAAUGUGGGCUAUGGGCACG- Trim3; mCG_19734 mmu-miR-30e 204 227 AGGUCAG--UUCCUACAAAUGU- |::||| |||||||| |:|| ACUGGUCCCAAGGAUGUGUGCAG Trim3; mCG_19734 mmu-miR-320 271 291 AAGCGGGAGAGUU-GGGUCGAAAA :||:|||| | |||||| -CUGCUCUCUGAUUCCCAGCC--- Trim3; mCG_19734 mmu-miR-324-3p 84 112 -GGUCGUCGUGG---AC-CCCGUCACC- ||:|||||||: || |||| ||| CCCGGCAGCACUGAAUGUGGGCUAUGGG Trim3; mCG_19734 mmu-miR-324-5p 400 438 -GUGGUUA-------------CGGGAUC-CCCUACGC- |:|||| |::|| | |||:|| | UCGCCAAGGUGUUUUUGCUAGGUUCUUGUGGGGUGGGU Trim3; mCG_19734 mmu-miR-326 188 210 -UGACCUCCUUCCCGGGUCU--CC- |||||: |||||::|| || GACUGGGU---GGGCCUGGACUGGU Trim3; mCG_19734 mmu-miR-328 49 84 UGCCU----UCCCG-------UCUCU-CCCGGUC- :||| ||||: ||||: ||||||| UUGGACAAGAGGGUCUGGCUAAGAGGUGGGCCAGA Trim3; mCG_19734 mmu-miR-329 54 78 -UUUUUCCA-AUCGA--C-CCACACAA ||:|:||| |:||| | |||| CAAGAGGGUCUGGCUAAGAGGUGG--- Trim3; mCG_19734 mmu-miR-330 1 24 AGAGACG----UCCGGGACACGAAACG- |||| :|||||| |||| || ---CUGCACAAGGGCCCU--GCUUGGCU Trim3; mCG_19734 mmu-miR-339 19 47 ACUCGAGGACCUCCU-------GUCCCU- :|||| ||||||: :||||: -UGGCUCAUGGAGGGACGGACAUAGGGGU Trim3; mCG_19734 mmu-miR-345 47 69 CGUGACCUGAUC-CCCAG-UCGU |:||||| || ||||| :|| -GAUUGGACAAGAGGGUCUGGCU Trim3; mCG_19734 mmu-miR-346 69 115 -UCUCCGUCCG-------------UGA-----GCCCG---UCUGU |||||::||| ||| :|||| :|:|| AAGAGGUGGGCCAGACCCGGCAGCACUGAAUGUGGGCUAUGGGCAC Trim3; mCG_19734 mmu-miR-34a 51 83 -UUGUU------GGUCGAUUCUGUGA-CGGU- :|||| |::||||||| : |||| GGACAAGAGGGUCUGGCUAAGAGGUGGGCCAG Trim3; mCG_19734 mmu-miR-34c 90 125 -CGU------UAGUCGAUUGAUGUG-----ACGGA ||| :| :|||| :||| |||| AGCACUGAAUGUGGGCUAUGGGCACGGGUGUGCCC Trim3; mCG_19734 mmu-miR-351 19 47 GUCCGAGU--UUCCC-GAG-GAGUCCCU- |||||| :|||| | | :||||: -UGGCUCAUGGAGGGACGGACAUAGGGGU Trim3; mCG_19734 mmu-miR-378 192 219 UGUGUCCUGGACCU---CAG---UCCUC : ||:|||||| ||| |||| -GGGUGGGCCUGGACUGGUCCCAAGGAU Trim3; mCG_19734 mmu-miR-383 263 285 UCGGUGUCAGUGGA-AGACUAGA || ||||| || ||||||: -CCCUCAGUCUGCUCUCUGAUUC Trim3; mCG_19734 mmu-miR-412 102 129 UGCCGAUCACCUG-GUCCACU----UCA- ||||| |||:| |:|||| ||| -GGGCUA-UGGGCACGGGUGUGCCCAGUG Trim3; mCG_19734 mmu-miR-423 189 211 -GACUC-CCCGGAGUCUGGCUCGA |||:| |||||| :|||:| |: ACUGGGUGGGCCU-GGACUG-GUC Trim3; mCG_19734 mmu-miR-449b 102 132 GGUCGA---UCGU---UACGUG----ACGGA :||| :||| :||::| |||| -GGGCUAUGGGCACGGGUGUGCCCAGUGCCC Trim3; mCG_19734 mmu-miR-450b* 103 129 UACGUA---CGU-UUUACAAGGGUUA- || ||| :::||| ||||:| -GGCUAUGGGCACGGGUGUGCCCAGUG Trim3; mCG_19734 mmu-miR-455-5p 97 117 GCUACAUCAGGUUUCCGUGUAU ||||:| |:| :|||||: -AAUGUGGGCUAUGGGCACGG- Trim3; mCG_19734 mmu-miR-465-3p 1 21 AGAUGAAUCUUUCCGGGACUAG- ||:| ||:||||||| |: -CUGCAC--AAGGGCCCUGCUUG Trim3; mCG_19734 mmu-miR-469 50 77 -CCUGUGGUUCUAGUUACUUUCUCCGU ||||| |:|:|| ||||||: UGGACAAGAGGGUCUGGCUAAGAGGUG Trim3; mCG_19734 mmu-miR-483 15 50 -UGUUCUGC---CCUCCCC-------UCCUCACU- :| |:| |||||| |||:|||| UGCUUGGCUCAUGGAGGGACGGACAUAGGGGUGAU Trim3; mCG_19734 mmu-miR-484 182 205 UAGCC-CUC-CCCUGACUCGGACU- |:|| || ||| ||:|||||: UUUGGUGACUGGG--UGGGCCUGGA Trim3; mCG_19734 mmu-miR-485-5p 279 311 CUUAAGUA---GUGCCG------GUCGGAGA- :|||| | || |||||||| UGAUUCCCAGCCUGGGGCCAGAACAGCCUCUU Trim3; mCG_19734 mmu-miR-490 419 452 GUCG----UACCUCA---GGAGG---UCCAAC- :|: :|||:|| :|||: :||||| AGGUUCUUGUGGGGUGGGUCUCUGAAGGGUUGG Trim3; mCG_19734 mmu-miR-541 290 327 -ACACUGGU--UGU----------AGUC-UUAGGGAA || |:||| ||| |||| |:||||| CUGGGGCCAGAACAGCCUCUUACUUCAGAAGUCCCUC Trim3; mCG_19734 mmu-miR-543 69 103 -UCUUCACGUGG----------CG---CUUACAAA |||:||| :|| || |||||| AAGAGGUGGGCCAGACCCGGCAGCACUGAAUGUG- Trim3; mCG_19734 mmu-miR-551b 91 114 -GUGACUUUGGUUC-AUACCCAGC ||||||| : | |||||| | GCACUGAAUGUGGGCUAUGGG-CA Trim3; mCG_19734 mmu-miR-615 71 113 -UUCUCCC--UCUGGG---------------UCCGA-GCCU |:| ||| |||||| :|||| :||: GAGGUGGGCCAGACCCGGCAGCACUGAAUGUGGGCUAUGGGC Trim3; mCG_19734 mmu-miR-665 291 312 AUUCCCUGGA---GUCGGAGGACCA |||:|| |||||||:| --UGGGGCCAGAACAGCCUCUUA-- Trim3; mCG_19734 mmu-miR-666 102 129 -CCGAGA---GUGUCGACACGGG-CGA |||| |||:| ||||||| |: GGGCUAUGGGCACGGGUGUGCCCAGUG Trim3; mCG_19734 mmu-miR-667 100 122 GAACCCG--ACCCACCGUCCACAGU ||||| |||| |:||||| -GUGGGCUAUGGGCA-CGGGUGUG- Trim3; mCG_19734 mmu-miR-668 99 124 CCAUCACCCGG--CUCG-GCUCAC-UGU ||||||: |:|| ||:||| :| ---UGUGGGCUAUGGGCACGGGUGUGCC Trim3; mCG_19734 mmu-miR-671 304 339 -GGAGG---------UCGGGGAGGUCCCGA---AGGA ||||: ||:|||||: ||:| ||| GCCUCUUACUUCAGAAGUCCCUCU--GGUUGUCUCCC Trim3; mCG_19734 mmu-miR-674 248 276 AUGUGGUGAGGGUA-----GAGUCA--CG- ||||| | ||| |||||| || CACACC-C-CCCUUACACCCUCAGUCUGCU Trim3; mCG_19734 mmu-miR-676 19 38 -UCGAGUUGUUGGAGUCCUGCC- :||||| :| :|||||| UGGCUCAUGGA----GGGACGGA Trim3; mCG_19734 mmu-miR-677 79 100 AGUCU---UCGAUUAGUAGUGACUU- |||| :|| ||||||| CCAGACCCGGCAG-----CACUGAAU Trim3; mCG_19734 mmu-miR-681 272 298 UCGACGGAC----GGUCG--CUCCGAC ||| :||| ||||| |:||| UGCUCUCUGAUUCCCAGCCUGGGGCC- Trim3; mCG_19734 mmu-miR-683 501 518 CUCCUGUGUCGAAUGUCGUCC |||||||: ||||| --UGACACAGUAU-CAGCAA- Trim3; mCG_19734 mmu-miR-688 190 206 CUUAUUCAUCAGCGGACGCU- |::||:| ||||| || --CUGGGUGG--GCCUG-GAC Trim3; mCG_19734 mmu-miR-689 8 37 -CCUGGGGCGGCUCGC------CCCUGC- ||:|||:||: :|| |||||| AGGGCCCUGCUUGGCUCAUGGAGGGACGG Trim3; mCG_19734 mmu-miR-695 265 293 AAGUCAGUGGA-----UACGGGUUAGA- |||||| || || ||||: || CUCAGUCUGCUCUCUGAUUCCCAGCCUG Trim3; mCG_19734 mmu-miR-697 198 222 AGAGGUGUCCUGG-------UCCUACAA || ||||: ||||||| --GCCU--GGACUGGUCCCAAGGAUGUG Trim3; mCG_19734 mmu-miR-699 107 132 -GCUCG-GUCCA-GCG--UGACGGA :|:|| |:||| :|| | |||| AUGGGCACGGGUGUGCCCAGUGCCC Trim3; mCG_19734 mmu-miR-702 426 457 CUCGCCCCA--------UUUCCCA-CC-CGU- |:||||| :|||||| || |:| -UGUGGGGUGGGUCUCUGAAGGGUUGGAGUAU Trim3; mCG_19734 mmu-miR-705 126 151 -ACGGGU-GGGGUGGAGGG--UGG- ||||| |||: |||||| ||| GUGCCCUUCCCUUCCUCCCCAACCC Trim3; mCG_19734 mmu-miR-708 315 334 AUCUUCGAGUGUCAGAUCAAC- |||||: | | |||:|||| CAGAAGUCC-C--UCUGGUUGU Trim3; mCG_19734 mmu-miR-709 263 287 AGGAG---GACG-GAGACGGAGG- |||| |||| ||||| :||| CCCUCAGUCUGCUCUCUGAUUCCC Trim3; mCG_19734 mmu-miR-711 256 288 -GAAUGU-------AGA-GAGGGGCCCAGGG- |||||| ||| |||:|:| |||| CCUUACACCCUCAGUCUGCUCUCUGAUUCCCA Trim3; mCG_19734 mmu-miR-712 8 34 -CCAU-GGCGGGCCC---ACUUCCUC || |:|| || ||:|||: AGGGCCCUGCUUGGCUCAUGGAGGGA Trim3; mCG_19734 mmu-miR-713 110 131 -CGA---CACACGGAAGUCACGU || ||||||| |||||| GGCACGGGUGUGCC--CAGUGCC Trim3; mCG_19734 mmu-miR-714 185 205 -CGCUGGCUGGCCGGGAGCAGC |:|||:|: :|| ||| | GGUGACUGGGUGGGCCUGGA-- Trim3; mCG_19734 mmu-miR-715 97 119 GUGCGCCCCC-ACACGUGCCUC |:|:||| || ||||||: AAUGUGGGCUAUGGGCACGGGU Trim3; mCG_19734 mmu-miR-721 140 164 AAGGGGGAAAA---UUAACGUGAC ||||| ::||||||| CUCCCCAACCCCACGGUUGCACUU Trim3; mCG_19734 mmu-miR-758 192 217 AUCACCUGGU-----CCAGUGUUU- :||||:|| |||| |||: GGGUGGGCCUGGACUGGUCCCAAGG Trim3; mCG_19734 mmu-miR-762 275 310 CGAGAC--AGGG-------CCGGG---GUCGGGG- ||||| |||| |||| |||||:| UCUCUGAUUCCCAGCCUGGGGCCAGAACAGCCUCU Trim3; mCG_19734 mmu-miR-763 272 295 -CGGU-GACCAAGAAGGGUC-GACC- ||: ||| ||||||| |||| UGCUCUCUGA---UUCCCAGCCUGGG Trim3; mCG_19734 mmu-miR-764-3p 112 136 -UGUCA--ACGGUGAUACCGGAGGA ||:| |||| | :|| |||:| CACGGGUGUGCC-CAGUGCCCUUCC Trim3; mCG_19734 mmu-miR-764-5p 101 126 -UCCU---CCUGUA--CACUCGUGG- :|| ||:|| ||| || || UGGGCUAUGGGCACGGGUGUGC-CCA Trim3; mCG_19734 mmu-miR-9* 169 187 UGAAAGCCAAUAGAUCGAAAU- |||||| ||| |||||: --AUUCGGU--UCUUGCUUUGG Trim3; mCG_19734 mmu-miR-96 109 132 -UCGUUUUUACACGA-UCACGGUUU :||| ::||||| |||||| GGGCACGGGUGUGCCCAGUGCCC-- Trim3; mCG_19734 mmu-miR-98 296 318 UUGUUAUGUUGAAUGAUGGAGU- ||: |||:| :|||:||| -CCAGAACAGCCUCUUACUUCAG Trim3; mCG_19734 mmu-miR-106a 158 165 A-----------------------UGGACGUGACAAUCGUGAAAC ||| ||| ||| ||||||| CCAGUGCCCUUCCCUUCCUCCCCAACCC-CACGGUU-GCACUUUA Trim3; mCG_19734 mmu-miR-106b 158 165 UAGAC-----------------------GUGACAGUCGUGAAAU ||| ||: |||||||| CCAGUGCCCUUCCCUUCCUCCCCAACCCCACGGUU-GCACUUUAU Trim3; mCG_19734 mmu-miR-130a 156 163 -----UACGGGAAAAU---------------UG-UAACGUGAC :||||||| || :||||||| GCCCAGUGCCCUUCCCUUCCUCCCCAACCCCACGGUUGCACUU Trim3; mCG_19734 mmu-miR-130b 156 163 -----UACGGGAA----AGUAG------------UAACGUGAC :||||||| || || :||||||| GCCCAGUGCCCUUCCCUUCCUCCCCAACCCCACGGUUGCACUU Trim3; mCG_19734 mmu-miR-17-5p 158 165 UGA---------------------UGGACGUGACAUUCGUGAAAC ||| ||| || ||||||| CCAGUGCCCUUCCCUUCCUCCCCAACCC-CACGGUU-GCACUUUA Trim3; mCG_19734 mmu-miR-181a 95 102 UGAGU--------------------GGCUGUCGCAACUUACAA |||:|||| ||||||| GGUCUGGCUAAGAGGUGGGCCAGACCCGGCAGCACUGAAUGUG Trim3; mCG_19734 mmu-miR-181b 95 102 G------------------GGU---GGCUGUCGUUACUUACAA ||| |||:||||| ||||||| GGUCUGGCUAAGAGGUGGGCCAGACCCGGCAGCACUGAAUGUG Trim3; mCG_19734 mmu-miR-181c 95 102 UGAGU--------------------GGCUGUCCA-ACUUACAA |||:||| ||||||| GGUCUGGCUAAGAGGUGGGCCAGACCCGGCAGCACUGAAUGUG Trim3; mCG_19734 mmu-miR-181d 95 102 -----------------UUGGGU--GGCUGUUGUUACUUACAA ::|| |||:||:|| ||||||| GGUCUGGCUAAGAGGUGGGCCAGACCCGGCAGCACUGAAUGUG Trim3; mCG_19734 mmu-miR-20a 158 165 GA----------------------UGGACGUGAUAUUCGUGAAAU ||| ||| |||||||| CCAGUGCCCUUCCCUUCCUCCCCAACCC-CACGGUU-GCACUUUAU Trim3; mCG_19734 mmu-miR-330 179 186 AGA---------GACGU------------CCGGGACACGAAACG :|||| ||::|| ||||||| CCAACCCCACGGUUGCACUUUAUUUAUUCGGUUCU-UGCUUUGG Trim3; mCG_19734 mmu-miR-362 212 219 AAG----------------UGUGGAU----CCAAGGUUCCUAA : :|||: ||| |||||||| CUUGCUUUGGUGACUGGGUGGGCCUGGACUGGUCCCAAGGAUG Trim3; mCG_19734 mmu-miR-485-5p 302 309 C------------UUAAGUAGUG----CCG-----GUCGGAGA :|||| :| ||| |||||||| CAGUCUGCUCUCUGAUUCCCAGCCUGGGGCCAGAACAGCCUCUU Trim3; mCG_19734 mmu-miR-697 214 221 AGA-----------------GGUGUCCUGG-------UCCUACAA || ||||: ||||||| UGCUUUGGUGACUGGGUGGGCCU--GGACUGGUCCCAAGGAUGUG Trim3; mCG_19734 mmu-miR-702 73 80 CUCGCCCCAUU---------------------UC-CCACCCGU |||||:| || ||||||| CAUAGGGGUGAUUGGACAAGAGGGUCUGGCUAAGAGGUGGGCC Trim3; mCG_19734 mmu-miR-702 193 200 CU--------------------CGCC-CCAUUU-CCCACCCGU || |||:| |||||||| GCACUUUAUUUAUUCGGUUCUUGCUUUGGUGACUGGGUGGGCC Trim3; mCG_19734 mmu-miR-721 156 163 A-------------------AGGGGGAAAA---UUAACGUGAC ||||| ::||||||| GCCCAGUGCCCUUCCCUUCCUCCCCAACCCCACGGUUGCACUU Trim3; mCG_19734 mmu-miR-801 365 372 CAGCUAAGGCGUGCG---------------------UGUCGUUAG |:| ||| :|| | |||||||| -UUGUCUCCCUAC-CACCCUAUACACACUGACAGAGACAGCAAUA Trim3; mCG_19734 mmu-miR-93 158 165 GA----------------------UGGACGUGCUUGUCGUGAAAC ||| ||||: ||||||| CCAGUGCCCUUCCCUUCCUCCCCAACCC-CACGGUU-GCACUUUA Trim3; mCG_19734 mmu-let-7a 296 316 ugauaUGUUGGAUGAUGGAGU |||:||| :|||:||| ccagaACAGCCTCTTACTTCA Trim3; mCG_19734 mmu-let-7b 294 316 uuGGU-GUGUUGGAUGAUGGAGU ||| |||:||| :|||:||| ggCCAGAACAGCCTCTTACTTCA Trim3; mCG_19734 mmu-let-7c 294 316 uuGGU-AUGUUGGAUGAUGGAGU ||| |||:||| :|||:||| ggCCAGAACAGCCTCTTACTTCA Trim3; mCG_19734 mmu-let-7e 296 316 ugauaUGUUGGAGGAUGGAGU |||:||||:|||:||| ccagaACAGCCTCTTACTTCA Trim3; mCG_19734 mmu-miR-106a 146 165 aUGGACGUGACAAUCGUGAAAc ||| ||| ||| ||||||| aACC-CCACGGTT-GCACTTTa Trim3; mCG_19734 mmu-miR-106b 146 165 UAGACGUGACAGUCGUGAAAU | | ||| ||: |||||||| AACCCCACGGTT-GCACTTTA Trim3; mCG_19734 mmu-miR-10a 164 196 guguuUAAGCCUAGA----------UGUCCCAu |||||| ||| || |||| tatttATTCGGTTCTTGCTTTGGTGACTGGGTg Trim3; mCG_19734 mmu-miR-124a 110 133 CCGU----AAGUGGCGCACGGAAu |||| | ::|| ||||| | GGCACGGGTGTGCCCAGTGCCCTt Trim3; mCG_19734 mmu-miR-125a 427 448 guguCCAAUUUCCCAGAG---UCCCu ||| ||||||| |||| gtggGGT----GGGTCTCTGAAGGGt Trim3; mCG_19734 mmu-miR-125b 425 448 AGUGUUCAAUCCCAGAG---UCCCu |:::::| | ||||||| |||| TTGTGGGGT-GGGTCTCTGAAGGGt Trim3; mCG_19734 mmu-miR-129-3p 419 450 UACGA-AAAACCCCA---------UUCCCGAa | |:| || |||||| |||||:| AGGTTCTTGTGGGGTGGGTCTCTGAAGGGTTg Trim3; mCG_19734 mmu-miR-130a 126 163 uACGGGAA---AA-------UUG------UAACGUGAc ||||||| || ||| :||||||| gTGCCCTTCCCTTCCTCCCCAACCCCACGGTTGCACTt Trim3; mCG_19734 mmu-miR-130b 145 163 uacGGGAAAGUAGUAACGUGAc ||| || :||||||| caaCCC---CACGGTTGCACTt Trim3; mCG_19734 mmu-miR-133b 60 82 aucGACCAACU-UCC-CCUGGUu |||| | | ||| ||:||| ggtCTGGCTAAGAGGTGGGCCAg Trim3; mCG_19734 mmu-miR-138 500 516 cuaaGUGUUGUGGUCGa ||||::|:|||| atgaCACAGTATCAGCa Trim3; mCG_19734 mmu-miR-140* 168 188 aggcaCCAAGAUGGGACACCAu |||||| : || |||| tattcGGTTCT-TGCTTTGGTg Trim3; mCG_19734 mmu-miR-145 28 54 uUCCCU--AAGGA-CCCUUUUGACCUG ||||| | | |||: :|:||||| gAGGGACGGACATAGGGGTGATTGGAC Trim3; mCG_19734 mmu-miR-149 60 83 CCUCAC---UUCUGUGCCUCGGUCU || || |||| :: |:|||||| GGTCTGGCTAAGAGGT-GGGCCAGA Trim3; mCG_19734 mmu-miR-151 256 274 GGAGUUCCUCGGAGUCAGAuc |||:| | ||||||||| CCTTA--CACCCTCAGTCTgc Trim3; mCG_19734 mmu-miR-17-5p 144 165 uGAUGGACGUGACAUUCGUGAAAc | ||| ||| || ||||||| cCAACC-CCACGGT-TGCACTTTa Trim3; mCG_19734 mmu-miR-181a 80 102 ugaguGGCUGUCGCAACUUACAa |||:|||| ||||||| cagacCCGGCAGCACTGAATGTg Trim3; mCG_19734 mmu-miR-181b 78 102 gGGU---GGCUGUCGUUACUUACAa ||| |||:||||| ||||||| gCCAGACCCGGCAGCACTGAATGTg Trim3; mCG_19734 mmu-miR-181c 80 102 ugaguGGCUGUC-CAACUUACAa |||:||| ||||||| cagacCCGGCAGCACTGAATGTg Trim3; mCG_19734 mmu-miR-181d 76 102 uugGGU---GGCUGUUGUUACUUACAa ||| |||:||:|| ||||||| gggCCAGACCCGGCAGCACTGAATGTg Trim3; mCG_19734 mmu-miR-183 112 133 GU-CACUUAAGAUGGUCACGGUAu || | | :| | |||||||| | CACGGGTGTGC--CCAGTGCCCTt Trim3; mCG_19734 mmu-miR-184 262 286 UGGGAAU-AGUCAAGAGGC--AGGu ||||| | || | ||||:| ||| ACCCTCAGTCTGCTCTCTGATTCCc Trim3; mCG_19734 mmu-miR-185 317 338 CUUGACGGA----AAGAGAGGu ||| | ||| || ||||| GAAGTCCCTCTGGTTGTCTCCc Trim3; mCG_19734 mmu-miR-187 63 88 GGCCGA----CGUUGUGUUCUGUGCu |:|||| | : :| |||| || CTGGCTAAGAGGTGGGCCAGACCCGg Trim3; mCG_19734 mmu-miR-187 85 116 GGCCGACG----UUGUGU------UCUGUGCu ||||| || ||:::: :|:|||| CCGGCAGCACTGAATGTGGGCTATGGGCACGg Trim3; mCG_19734 mmu-miR-188 11 35 uGGGAGG---UG-GUACGUUCCCUac |||| | :| |||| :||||| gCCCTGCTTGGCTCATG-GAGGGAcg Trim3; mCG_19734 mmu-miR-193 183 204 gACC-CUGAAACAUCCGGUCaa ||| |||| ||:|||| | tTGGTGACTGGGTGGGCCTGga Trim3; mCG_19734 mmu-miR-204 34 63 GUCCGUAUC----CUA--CUG-UUUCCCuu |:| ||||| ||| ||| |:|||| CGGACATAGGGGTGATTGGACAAGAGGGtc Trim3; mCG_19734 mmu-miR-205 418 447 gUCUGAGG-----CCACCU---UACUUCCu ||::||: |||||: |||||| tAGGTTCTTGTGGGGTGGGTCTCTGAAGGg Trim3; mCG_19734 mmu-miR-207 28 58 CUCCCU-CCU-----CUCGGU--CCUCUUCg |||||| ||| |:|: | ||| ||| GAGGGACGGACATAGGGGTGATTGGACAAGa Trim3; mCG_19734 mmu-miR-20a 145 165 GAUGGACGUGAUAUUCGUGAAAU | ||| ||| :| |||||||| CAACC-CCACGGT-TGCACTTTA Trim3; mCG_19734 mmu-miR-211 34 63 uCC-GUUUC----CUA--CUG-UUUCCCuu || || || ||| ||| |:|||| cGGACATAGGGGTGATTGGACAAGAGGGtc Trim3; mCG_19734 mmu-miR-212 192 210 CCGGCACUGACCUCUGACAAu || :| | ||| ||||| | GGGTGGGCCTG--GACTGGTc Trim3; mCG_19734 mmu-miR-214 186 208 gACGGACAGACACGGAC--GACa || ||| || ||||| ||| gTGACTGGGTGGGCCTGGACTGg Trim3; mCG_19734 mmu-miR-221 81 105 UUUGGGUCGUC-UG--UUACAUCga |:||||:|||| || |||||:| AGACCCGGCAGCACTGAATGTGGgc Trim3; mCG_19734 mmu-miR-24 172 201 GACAAGGACG-----ACU---UGACUCGGu | ||||:||| ||| : ||:||| CGGTTCTTGCTTTGGTGACTGGGTGGGCCt Trim3; mCG_19734 mmu-miR-24* 93 114 UGAC-UAUAGUCGAGUCAUCCGUG |||| ||:| :||| |:||||| ACTGAATGTGGGCTA--TGGGCAC Trim3; mCG_19734 mmu-miR-292-3p 74 96 ugugaGUUUUGGACCGCCGUGAa | |:||| ||| ||||| gtgggCCAGACCCGGCAGCACTg Trim3; mCG_19734 mmu-miR-292-5p 429 454 guuuuCUCGGGGG----UCAAACUCA |:|:|:|: :||| |||| ggggtGGGTCTCTGAAGGGTTGGAGT Trim3; mCG_19734 mmu-miR-296 417 441 ugUCCUA----ACUCCCCCCCGGGA ||| | ||:|| ||| |:|| ctAGGTTCTTGTGGGGTGGGTCTCT Trim3; mCG_19734 mmu-miR-298 293 330 CCU--UCUUGUCGG-----GA---------GGAGACgg ||: ||||||||| || |||||| GGGCCAGAACAGCCTCTTACTTCAGAAGTCCCTCTGgt Trim3; mCG_19734 mmu-miR-29b 90 107 UUGUGACUAAAGUUUACCACGAU |:|||||| | :||| |||| AGCACTGA----ATGTGG-GCTA Trim3; mCG_19734 mmu-miR-302 76 97 aguGGUUUUGUACCUUCGUGAau || |:|| || |||||| gggCC-AGACCCGGCAGCACTga Trim3; mCG_19734 mmu-miR-302c 75 97 ggugacUUUGUACCUUCGUGAac |:|| || |||||| tgggccAGACCCGGCAGCACTga Trim3; mCG_19734 mmu-miR-302d 75 96 ugugaGUUUGUACCUUCGUGAa ||:|| || |||||| tgggcCAGACCCGGCAGCACTg Trim3; mCG_19734 mmu-miR-320 269 293 aAG-CGGGAGAGU-UGGGUCGAAaa || ||:|||| | |||||| | gTCTGCTCTCTGATTCCCAGCCTgg Trim3; mCG_19734 mmu-miR-324-3p 85 110 GGUCGUCGUGG---AC-CCCGUCACC ||:|||||||: || |||| ||| CCGGCAGCACTGAATGTGGGCTATGG Trim3; mCG_19734 mmu-miR-324-5p 414 436 gugGUUACGGGAUC-CCCUACgc | | |::|| | |||:|| ttgCTAGGTTCTTGTGGGGTGgg Trim3; mCG_19734 mmu-miR-326 204 229 UGACC-----UCCUUCCCGGGUCUCc ||||| |||| | |: ||||| ACTGGTCCCAAGGATGTGTGCAGAGc Trim3; mCG_19734 mmu-miR-328 58 82 UGCCUUCCCG--UCU-CUCCCGGUC | || ||| ||| | ||||||| AGGGTCTGGCTAAGAGGTGGGCCAG Trim3; mCG_19734 mmu-miR-329 55 80 UUUUUCCA-AUCGA--C-CCACACaa ||:|:||| |:||| | |||| | AAGAGGGTCTGGCTAAGAGGTGGGcc Trim3; mCG_19734 mmu-miR-330 166 186 AGAGACGUCCGGGACACGAAACg |:| | | ||::|| ||||||| TTTATTC-GGTTCT-TGCTTTGg Trim3; mCG_19734 mmu-miR-345 46 68 cgUGACCUGAUC-CCCAG-UCGu |:||||| || ||||| :|| tgATTGGACAAGAGGGTCTGGCt Trim3; mCG_19734 mmu-miR-346 70 95 UCUCCGUCCG---UGAGCCCGUC-UGu |||||::||| || | ||||| || AGAGGTGGGCCAGAC-CCGGCAGCACt Trim3; mCG_19734 mmu-miR-34a 80 99 uUGUUGGUCGAUUCUGUGACggu | | ||:|| || ||||| cAGACCCGGC--AG-CACTGaat Trim3; mCG_19734 mmu-miR-34c 111 131 CGUUAGUCGAUUGAUGUGACGGa ||| |:| |: || |||| GCA--CGGGTGTGCCCAGTGCCc Trim3; mCG_19734 mmu-miR-351 1 29 gucCGAGUUUCC----CGAG--GAGUCCCU || |||:|| |||: |||| ||| -ctGCACAAGGGCCCTGCTTGGCTCATGGA Trim3; mCG_19734 mmu-miR-362 193 219 aaguguGGAU----CCAAGGUUCCUAa |||: ||| |||||||| ggtgggCCTGGACTGGTCCCAAGGATg Trim3; mCG_19734 mmu-miR-378 191 218 uguguCCUGGACCU---CAG---UCCUc ||:|||||| ||| |||| tgggtGGGCCTGGACTGGTCCCAAGGAt Trim3; mCG_19734 mmu-miR-383 262 284 UCGGUGUCAGUGGA-AGACUAga | || ||||| || |||||| ACCCTCAGTCTGCTCTCTGATtc Trim3; mCG_19734 mmu-miR-412 101 123 ugCCGAUCACCUG-GUCCACuuca ||||| |||:| |:|||| tgGGCTA-TGGGCACGGGTGtgcc Trim3; mCG_19734 mmu-miR-423 190 211 GACUC-CCCGGAGUCUGGCUCGa |||:| |||||| :|||:|: | CTGGGTGGGCCT-GGACTGGTCc Trim3; mCG_19734 mmu-miR-449b 101 131 gguCGAU---CGU-----UAC--GUGACGGa |||| ||| :|| || |||| tggGCTATGGGCACGGGTGTGCCCAGTGCCc Trim3; mCG_19734 mmu-miR-450b* 115 139 uaCGUACGUUUUAC---AAGGGuua |::||| |:|| ||||| ggGTGTGCCCAGTGCCCTTCCCttc Trim3; mCG_19734 mmu-miR-455-5p 96 117 gcUACAUCAGGUUUCCGUGuau ||||:| |:| :||||| gaATGTGGGCTATGGGCACggg Trim3; mCG_19734 mmu-miR-469 35 62 CCUGUGGUUCUAGUUACU--UUCUCCgu |||||: ::|:| | ||: |||||| GGACATAGGGGTGATTGGACAAGAGGgt Trim3; mCG_19734 mmu-miR-483 23 48 uGUUCUGCCCUCCC---CUCCUCACU || |: |||| || |||:|||| tCATGGAGGGACGGACATAGGGGTGA Trim3; mCG_19734 mmu-miR-485-5p 279 309 cuUAA--GUAGUGCC---G----GUCGGAGA ||| || | :|| | |||||||| tgATTCCCAGCCTGGGGCCAGAACAGCCTCT Trim3; mCG_19734 mmu-miR-490 401 424 GUCGUACCUCAGGA--GGUCCAAc |: || || ||::| |:||||| CGCCAAGGTGTTTTTGCTAGGTTc Trim3; mCG_19734 mmu-miR-541 303 326 acacuGGUUGUAGUC-UUAGGGAa |: || |||| |:||||| agcctCTTACTTCAGAAGTCCCTc Trim3; mCG_19734 mmu-miR-543 70 103 UCUUCAC---GU---GGC-------GCUUACAaa |||:||| || ||| :|||||| AGAGGTGGGCCAGACCCGGCAGCACTGAATGTgg Trim3; mCG_19734 mmu-miR-551b 92 114 GUGACUUUGGUUC-AUACCCagc ||||||| :::| |||||| CACTGAATGTGGGCTATGGGcac Trim3; mCG_19734 mmu-miR-615 98 117 UUCUCCCUCUGGGUCCGAGCCu | | ||| | ::||| ||| ATGTGGGCTA--TGGGCACGGg Trim3; mCG_19734 mmu-miR-615 69 89 UUCUCCCUCUGGGUCCGAGCCu |||||| :|: |||| | ||| AAGAGGTGGG-CCAGACCCGGc Trim3; mCG_19734 mmu-miR-665 305 330 auucccUGGAGUC----GGAGGACCA ||:|||| || :||||| cctcttACTTCAGAAGTCCCTCTGGT Trim3; mCG_19734 mmu-miR-666 103 127 CCGAGA---GUGUCGACACGGGcga |||| | |||:| ||||||| GGCTATGGGCACGGGTGTGCCCagt Trim3; mCG_19734 mmu-miR-667 99 122 gaACCCG--ACCCACCGUCCACAgu ||||| |||| |:||||| tgTGGGCTATGGG-CACGGGTGTgc Trim3; mCG_19734 mmu-miR-668 96 122 ccauCACCCG--GCUCG-GCUCACugu |||||| :|:|| ||:||| gaatGTGGGCTATGGGCACGGGTGtgc Trim3; mCG_19734 mmu-miR-671 311 339 gGAGG---UCGGGGAGGUC--CCGAAGGA ||:| ||:|||||::| | || ||| aCTTCAGAAGTCCCTCTGGTTGTCTCCCT Trim3; mCG_19734 mmu-miR-674 246 272 AUGUGGUGAGGGUA-----GAGUCAcg ||||| | ||| | |||||| TACACACCCCCCTTACACCCTCAGTct Trim3; mCG_19734 mmu-miR-676 20 36 uCGAGUUGUUGGAGUCCUGCC ||||| :| :|||||| gGCTCATGGA----GGGACGG Trim3; mCG_19734 mmu-miR-681 272 298 uCGACGGAC----GGUC--GCUCCGac ||| :||| |||| :|:||| tGCTCTCTGATTCCCAGCCTGGGGCca Trim3; mCG_19734 mmu-miR-683 499 518 cUCCUGUGUCGAAUGUCGUcc | ||||||| | ||||| aATGACACAG-TATCAGCAac Trim3; mCG_19734 mmu-miR-688 188 205 CUUAUUCAUCAGCGGACgcu || |::||:| ||||| GACTGGGTGG--GCCTGgac Trim3; mCG_19734 mmu-miR-689 9 35 CCUGGGGCGGCUC----GC--CCCUGC ||:|||:||: :| :| |||||| GGGCCCTGCTTGGCTCATGGAGGGACG Trim3; mCG_19734 mmu-miR-697 199 221 aGAGGUGUCCUGG--UCCUACAa || || || || ||||||| cCTGGACTGGTCCCAAGGATGTg Trim3; mCG_19734 mmu-miR-699 108 131 gCUCG-GUCCA---GCGUGACGGa |:|| |:||| | || |||| tGGGCACGGGTGTGCCCAGTGCCc Trim3; mCG_19734 mmu-miR-702 59 80 CUC-GCCCCAUUUCCCACCCGu |:| | || |||: ||||||| GGGTCTGGCTAAGAGGTGGGCc Trim3; mCG_19734 mmu-miR-702 179 200 cucgccCCAUU-UCCCACCCGu |||:| |||||||| tgctttGGTGACTGGGTGGGCc Trim3; mCG_19734 mmu-miR-702 414 438 cuCGCCCC----AUUUCCCACCCgu || || |: :||||||| ttGCTAGGTTCTTGTGGGGTGGGtc Trim3; mCG_19734 mmu-miR-705 127 149 ACGGG-UGGGGUGGAGGG--UGG ||||| |||: |||||| ||| TGCCCTTCCCTTCCTCCCCAACC Trim3; mCG_19734 mmu-miR-709 262 279 aGGAGGACGGAGACG-GAGg || :| | ||||| ||| aCCCTCAG--TCTGCTCTCt Trim3; mCG_19734 mmu-miR-711 278 298 GAAUGUAGAGAGGGGCCCAGGg || |: || | ||:||| || CTGAT-TCCCAGCCTGGGGCCa Trim3; mCG_19734 mmu-miR-712 10 33 CCAUGGCGGGCC---CACUUCCuc || |:||::|| ||:||| GGCCCTGCTTGGCTCATGGAGGga Trim3; mCG_19734 mmu-miR-713 114 130 cgaCACACGGAAGUCACGu ||||||| |||||| cggGTGTGCC--CAGTGCc Trim3; mCG_19734 mmu-miR-714 186 206 CGCUGGCUGGCCGGGAGCAGc |:|||:|: :|| ||| | | GTGACTGGGTGGGCCTGGACt Trim3; mCG_19734 mmu-miR-721 140 163 aAGGG---GGAAAAUUAACGUGAc |||| || ::||||||| cTCCCCAACCCCACGGTTGCACTt Trim3; mCG_19734 mmu-miR-758 198 215 aucACCUGGUCCAGUGUUu |||||: |||| ||| gccTGGACT-GGTCCCAAg Trim3; mCG_19734 mmu-miR-762 268 292 cgAGAC-AGGGCC--GGGGUCGGgg |||| ||:| | :||||||| agTCTGCTCTCTGATTCCCAGCCtg Trim3; mCG_19734 mmu-miR-763 273 293 CG-GUGACCAAGAAGGGUC-GACC || | ||| ||||||| |||| GCTCTCTG---ATTCCCAGCCTGG Trim3; mCG_19734 mmu-miR-764-3p 113 135 UGUCAACG-GUGAUACCGGAGGa ||:| ||: | | :|| |||:| ACGGGTGTGCCCAGTGCCCTTCc Trim3; mCG_19734 mmu-miR-764-5p 98 115 UCCUCCUGUACACUCGUGg | | ||:| | ||:|||| ATGTGGGC-TATGGGCACg Trim3; mCG_19734 mmu-miR-801 348 372 cagcuaaGGC-GUGCGUGUCGUUAg |:| || |||||||| atacacaCTGACAGAGACAGCAATa Trim3; mCG_19734 mmu-miR-9* 167 185 ugaAAGCCAAUAGAUCGAAAu |||||| ||| ||||| ttaTTCGGT--TCTTGCTTTg Trim3; mCG_19734 mmu-miR-93 145 165 GAUGGACGUGCUUGUCGUGAAAc | ||| |||| :: ||||||| CAACC-CCACG-GTTGCACTTTa Trim3; mCG_19734 mmu-miR-96 110 133 uCGUUUUUACAC-GAUCACGGuuu ||| :::|||| | |||||| gGCACGGGTGTGCCCAGTGCCctt Trim3; mCG_19734 mmu-miR-98 295 316 uuGUUAUGUUGAAUGAUGGAGU ||: |||:| | :|||:||| gcCAGAACAGCCTCTTACTTCA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Trim3 RAID00043228 mmu-miR-466l-3p miRNA MIMAT0005830 Trim3 mRNA 55992 Prediction 0.2202 Trim3 RAID00056466 mmu-miR-20b-5p miRNA MIMAT0003187 Trim3 mRNA 55992 CLIP-seq//Prediction 0.6478 Trim3 RAID00107528 mmu-miR-301a-3p miRNA MIMAT0000379 Trim3 mRNA 55992 CLIP-seq//Prediction 0.6478 Trim3 RAID00187802 mmu-miR-201-5p miRNA MIMAT0000234 Trim3 mRNA 55992 CLIP-seq 0.5483 Trim3 RAID00231502 mmu-miR-20a-5p miRNA MIMAT0000529 Trim3 mRNA 55992 CLIP-seq//Prediction 0.6559 Trim3 RAID00376623 mmu-miR-17-5p miRNA MIMAT0000649 Trim3 mRNA 55992 CLIP-seq//Prediction 0.6478 Trim3 RAID00484052 mmu-miR-6935-5p miRNA MIMAT0027770 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID00618187 mmu-miR-7030-5p miRNA MIMAT0027964 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID00637980 mmu-miR-152-3p miRNA MIMAT0000162 Trim3 mRNA 55992 CLIP-seq 0.5483 Trim3 RAID00647415 mmu-miR-1956 miRNA MIMAT0009428 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID00895793 mmu-miR-6913-5p miRNA MIMAT0027726 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID00899554 mmu-miR-365-1-5p miRNA MIMAT0017077 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID00928467 mmu-miR-137-3p miRNA MIMAT0000149 Trim3 mRNA 55992 Prediction 0.2381 Trim3 RAID00946051 mmu-miR-130c miRNA MIMAT0025132 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID00961282 mmu-miR-6383 miRNA MIMAT0025129 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID01036792 mmu-miR-291b-3p miRNA MIMAT0003190 Trim3 mRNA 55992 Prediction 0.2202 Trim3 RAID01038038 mmu-miR-702-3p miRNA MIMAT0003492 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID01069529 mmu-miR-350-5p miRNA MIMAT0017040 Trim3 mRNA 55992 Prediction 0.2202 Trim3 RAID01123498 mmu-miR-665-5p miRNA MIMAT0017238 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID01133781 mmu-miR-142a-5p miRNA MIMAT0000154 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID01160319 mmu-miR-541-3p miRNA MIMAT0017209 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID01208292 mmu-miR-7655-5p miRNA MIMAT0029816 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID01300810 mmu-miR-7006-5p miRNA MIMAT0027916 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID01346077 mmu-miR-7079-3p miRNA MIMAT0028065 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID01602624 mmu-miR-485-5p miRNA MIMAT0003128 Trim3 mRNA 55992 Prediction 0.2202 Trim3 RAID01660388 mmu-miR-132-5p miRNA MIMAT0016984 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID01882841 mmu-miR-721 miRNA MIMAT0003515 Trim3 mRNA 55992 CLIP-seq//Prediction 0.6559 Trim3 RAID02085570 mmu-miR-181d-5p miRNA MIMAT0004324 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID02096704 mmu-miR-7242-3p miRNA MIMAT0028453 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID02237676 mmu-miR-203-3p miRNA MIMAT0000236 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID02238700 mmu-miR-106a-5p miRNA MIMAT0000385 Trim3 mRNA 55992 CLIP-seq//Prediction 0.6478 Trim3 RAID02319623 mmu-miR-6911-3p miRNA MIMAT0027723 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID02395679 mmu-miR-6240 miRNA MIMAT0024861 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID02533479 mmu-miR-8093 miRNA MIMAT0031394 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID02630766 mmu-miR-223-3p miRNA MIMAT0000665 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID02848119 mmu-miR-135a-2-3p miRNA MIMAT0017064 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID02890097 mmu-miR-6389 miRNA MIMAT0025137 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03057631 mmu-miR-6341 miRNA MIMAT0025084 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03139065 mmu-miR-6931-5p miRNA MIMAT0027762 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03150033 mmu-miR-7076-5p miRNA MIMAT0028058 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03161674 mmu-miR-92a-2-5p miRNA MIMAT0004635 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03397224 mmu-miR-130b-3p miRNA MIMAT0000387 Trim3 mRNA 55992 CLIP-seq//Prediction 0.6478 Trim3 RAID03398627 mmu-miR-190a-5p miRNA MIMAT0000220 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03401982 mmu-miR-92a-1-5p miRNA MIMAT0017066 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03464968 mmu-miR-874-5p miRNA MIMAT0017268 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03596710 mmu-miR-1224-3p miRNA MIMAT0017231 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03624969 mmu-miR-301b-3p miRNA MIMAT0004186 Trim3 mRNA 55992 CLIP-seq//Prediction 0.6478 Trim3 RAID03640406 mmu-miR-5623-5p miRNA MIMAT0022373 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03723338 mmu-miR-7075-5p miRNA MIMAT0028056 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03768199 mmu-miR-6929-5p miRNA MIMAT0027758 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03783858 mmu-miR-93-5p miRNA MIMAT0000540 Trim3 mRNA 55992 CLIP-seq//Prediction 0.6559 Trim3 RAID03801182 mmu-miR-365-2-5p miRNA MIMAT0017179 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03824563 mmu-miR-130a-3p miRNA MIMAT0000141 Trim3 mRNA 55992 CLIP-seq//Prediction 0.6478 Trim3 RAID03824897 mmu-miR-5132-5p miRNA MIMAT0020643 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03879422 mmu-miR-455-3p miRNA MIMAT0003742 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03981194 mmu-miR-6936-5p miRNA MIMAT0027772 Trim3 mRNA 55992 Prediction 0.1828 Trim3 RAID03994566 mmu-miR-106b-5p miRNA MIMAT0000386 Trim3 mRNA 55992 CLIP-seq//Prediction 0.6559 Trim3 RAID04046419 mmu-miR-3083-5p miRNA MIMAT0014874 Trim3 mRNA 55992 Prediction 0.1828