DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Rnf139 ATTTA 25-2031 2038-2042

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT015112 mmu-miR-136-5p Mus musculus Rnf139 75841 Mus musculus Sequencing Functional MTI (Weak) 19536157 MIRT597432 mmu-miR-455-3p Mus musculus Rnf139 75841 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT597430 mmu-miR-883a-5p Mus musculus Rnf139 75841 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT597429 mmu-miR-883a-3p Mus musculus Rnf139 75841 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT597428 mmu-miR-883b-3p Mus musculus Rnf139 75841 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322 MIRT597431 mmu-miR-3473c Mus musculus Rnf139 75841 Mus musculus HITS-CLIP Functional MTI (Weak) 21258322

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004519 mmu-let-7g* 75841 Rnf139 cguuccgucaccgGACAUGUca :|||||| uuuguguacauuaUUGUACAua 3 10 199 220 [mm9:15:58731888-58731909:+] 0.6966 121 0 -14.05 -0.3007 MIMAT0004519 mmu-let-7g* 75841 Rnf139 cguuccgucaccggACAUGUca |||||| ccuguuuaaauuugUGUACAuu 3 9 189 210 [mm9:15:58731878-58731899:+] 0.6966 120 0 -6.53 -0.2610 MIMAT0004527 mmu-miR-124* 75841 Rnf139 uaguuccaggcgACACUUGUgc | |||||| uuuaugacaaaaUUUGAACAaa 3 11 240 261 [mm9:15:58731929-58731950:+] 0.6439 122 0 -5.31 -0.3595 MIMAT0004530 mmu-miR-127* 75841 Rnf139 uagucucgggagacUCGAAGuc |||||| aaauuugaacaaauAGCUUCuu 3 9 249 270 [mm9:15:58731938-58731959:+] 0.6439 120 0 -9.83 -0.2070 MIMAT0004539 mmu-miR-183* 75841 Rnf139 aauaccgggaagccaUUAAGUg |||||| gagguauuuguuuaaAAUUCAg 2 8 21 42 [mm9:15:58731710-58731731:+] 0.6519 120 6 -8.41 -0.1907 MIMAT0004541 mmu-miR-188-3p 75841 Rnf139 acguuugggacguaCACCCUc |||||| uuuccuuaaaaugaGUGGGAa 2 8 356 376 [mm9:15:58732045-58732065:+] 0.5436 120 6 -12.45 -0.1342 MIMAT0004542 mmu-miR-191* 75841 Rnf139 cccUUG--CUUUAGGUUC-ACGUCg ||| |||| |::|| ||||| aaaAACUUGAAACCUGAGCUGCAGc 2 20 496 520 [mm9:15:58732185-58732209:+] 0.5124 130 0 -18.14 -0.6169 MIMAT0000230 mmu-miR-199a-3p 75841 Rnf139 auuGGUUACAC-GUCUGAUGACa ::| |||| :: :|||||| cguUUACUGUGAUGUGCUACUGu 2 20 128 150 [mm9:15:58731817-58731839:+] 0.6644 138 6 -15.23 -0.1415 MIMAT0000240 mmu-miR-207 75841 Rnf139 cucCCUCCUCUCGGUCCUCUUCg | | |||| | |||||| uuaGUAUAAGAG--ACGAGAAGa 2 21 402 422 [mm9:15:58732091-58732111:+] 0.4962 121 6 -13.28 -0.1762 MIMAT0000367 mmu-miR-291a-5p 75841 Rnf139 ucucucccgGAGGUGAAACUAc || |||||||| uguuaucaaCUAAACUUUGAUa 2 14 573 594 [mm9:15:58732262-58732283:+] 0.5420 149 7 -11.48 -1.2032 MIMAT0004573 mmu-miR-293* 75841 Rnf139 guUUUACAGUGUGUCAAAC-UCa ||: |||| ||||| || agAAGCAUCACUGUGUUUGCAGu 2 21 625 647 [mm9:15:58732314-58732336:+] 0.5420 120 0 -12.83 -0.1464 MIMAT0004575 mmu-miR-295* 75841 Rnf139 cuucacacggGGUGUAAACUca | | |||||| guuuuuaugaCAAAAUUUGAac 3 13 237 258 [mm9:15:58731926-58731947:+] 0.6439 124 0 -4.82 -0.1883 MIMAT0000375 mmu-miR-297a 75841 Rnf139 ugUACGUGUA--CGUGUGUAUGUa :||:|||| :::||||| | uuGUGUACAUUAUUGUACAUAGAa 2 21 200 223 [mm9:15:58731889-58731912:+] 0.6966 127 0 -14.83 -0.1689 MIMAT0004579 mmu-miR-302a* 75841 Rnf139 cguucauguugguGCAAAUUca :|||||| ucauugagguauuUGUUUAAaa 3 10 16 37 [mm9:15:58731705-58731726:+] 0.6519 121 0 -7.98 -0.1053 MIMAT0004620 mmu-let-7a* 75841 Rnf139 ccuuucugucAUCU-AACAUAUc || | ||||:|| gugaccuguuUAAAUUUGUGUAc 2 13 185 207 [mm9:15:58731874-58731896:+] 0.6966 127 0 -6.16 -0.1338 MIMAT0004621 mmu-let-7b* 75841 Rnf139 cccuuccgucauccAACAUAUc ||||:|| ugaccuguuuaaauUUGUGUAc 2 9 186 207 [mm9:15:58731875-58731896:+] 0.6966 124 0 -3.52 -0.1338 MIMAT0004622 mmu-let-7c-1* 75841 Rnf139 ccuuucgAUCUUCCAACAUGUc || | ||||||| auuugugUACAUUAUUGUACAu 2 16 198 219 [mm9:15:58731887-58731908:+] 0.6966 143 7 -7.48 -1.0184 MIMAT0004622 mmu-let-7c-1* 75841 Rnf139 ccuuucgaucuuccaACAUGUc |||||| accuguuuaaauuugUGUACAu 2 8 188 209 [mm9:15:58731877-58731898:+] 0.6966 120 6 -5.44 -0.2764 MIMAT0005439 mmu-let-7c-2* 75841 Rnf139 ccuuucugucAUCU-AACAUAUc || | ||||:|| gugaccuguuUAAAUUUGUGUAc 2 13 185 207 [mm9:15:58731874-58731896:+] 0.6966 127 0 -6.16 -0.1338 MIMAT0004623 mmu-let-7f* 75841 Rnf139 cccuuccguuAUCU-AACAUAUc || | ||||:|| gugaccuguuUAAAUUUGUGUAc 2 13 185 207 [mm9:15:58731874-58731896:+] 0.6966 127 0 -3.47 -0.1312 MIMAT0004627 mmu-miR-20a* 75841 Rnf139 gaaauucacgagcaUUACGUCa ||||||| agugggaaaaugaaAAUGCAGa 2 9 369 390 [mm9:15:58732058-58732079:+] 0.4959 140 7 -10.37 -1.2528 MIMAT0004629 mmu-miR-22* 75841 Rnf139 auuucgaacggugaCUUCUUga |||||| aguauaagagacgaGAAGAAaa 3 9 404 425 [mm9:15:58732093-58732114:+] 0.4962 120 0 -9.69 -0.1201 MIMAT0004643 mmu-miR-331-5p 75841 Rnf139 ccuaggGACCCUGGUAUGGAuc ||| | :|||||| gugcuaCUGUAAAUAUACCUcu 3 17 141 162 [mm9:15:58731830-58731851:+] 0.6966 132 0 -12.48 -0.2272 MIMAT0004647 mmu-miR-338-5p 75841 Rnf139 gugagucgugguccuAUAACAa |||||| uaaauuuguguacauUAUUGUa 2 8 195 216 [mm9:15:58731884-58731905:+] 0.6966 120 6 -6.90 -0.2402 MIMAT0000586 mmu-miR-340-3p 75841 Rnf139 cgauauuUCAUUGACUCUGCcu |||| |||||| gaacuuuAGUAUAAGAGACGag 3 16 397 418 [mm9:15:58732086-58732107:+] 0.4962 131 0 -15.74 -0.1003 MIMAT0000605 mmu-miR-350 75841 Rnf139 cuuucacauacccgAAACACuu |||||| gugaccuguuuaaaUUUGUGua 3 9 185 206 [mm9:15:58731874-58731895:+] 0.6966 120 0 -7.00 -0.6057 MIMAT0004667 mmu-miR-199b 75841 Rnf139 auuGGUUACAC-GUCUGAUGACa ::| |||| :: :|||||| cguUUACUGUGAUGUGCUACUGu 2 20 128 150 [mm9:15:58731817-58731839:+] 0.6644 138 6 -15.23 -0.1415 MIMAT0004670 mmu-miR-7a* 75841 Rnf139 auaccgucUGACAC--UAAACAAc |:|| | ||||||| uacuaaucAUUGAGGUAUUUGUUu 2 15 10 33 [mm9:15:58731699-58731722:+] 0.6519 145 7 -6.47 -0.9715 MIMAT0004691 mmu-miR-382* 75841 Rnf139 uuuuucACAAC--AGGCACUUACu ||||| |:||||||| uauggaUGUUGAAACUGUGAAUGc 2 17 100 123 [mm9:15:58731789-58731812:+] 0.6322 155 7 -17.99 -0.9582 MIMAT0004704 mmu-miR-335-3p 75841 Rnf139 ccAGUCCUCGUUAUUACUUUUu | || :| || |||||||| aaUGAGUGGGAA-AAUGAAAAu 2 21 365 385 [mm9:15:58732054-58732074:+] 0.4959 158 7 -9.93 -0.7252 MIMAT0001422 mmu-miR-434-3p 75841 Rnf139 uccUCAGCUCACUA-CCAAGUUu || : || | | ||||||| ugcAGCUUAGAGCUAGGUUCAAa 2 20 515 537 [mm9:15:58732204-58732226:+] 0.5160 150 7 -12.69 -0.8054 MIMAT0004781 mmu-miR-532-3p 75841 Rnf139 acguucggaaccCACACCCUcc | |||||| uuuccuuaaaauGAGUGGGAaa 3 11 356 377 [mm9:15:58732045-58732066:+] 0.5436 122 0 -12.13 -0.1518 MIMAT0003129 mmu-miR-485* 75841 Rnf139 cucuccucucggcacAUACUGa |||||| aaguuuucacguuuuUAUGACa 2 8 227 248 [mm9:15:58731916-58731937:+] 0.6966 120 6 -8.61 -0.5435 MIMAT0003173 mmu-miR-547 75841 Rnf139 gaGUG-AGUUUCUACA-UGGUUc ||| |||: | ||| ||||| uuCACGUCAGUG-UGUAACCAAg 2 20 67 88 [mm9:15:58731756-58731777:+] 0.6375 124 0 -21.42 -0.6716 MIMAT0003189 mmu-miR-291b-5p 75841 Rnf139 ccucucccgGAGGUGAAACUAg || |||||||| uguuaucaaCUAAACUUUGAUa 2 14 573 594 [mm9:15:58732262-58732283:+] 0.5420 149 7 -13.26 -1.2032 MIMAT0015219 mmu-miR-3475 75841 Rnf139 aaGUUUGGUACACGGAGGUcu |||| || | |||||| gcCAAA-GAU-U-CCUCCAug 3 20 305 322 [mm9:15:58731994-58732011:+] 0.5912 125 0 -13.66 -0.1290 MIMAT0004823 mmu-miR-666-3p 75841 Rnf139 ucguccgcuagugCGACGUCGg |||||||| acuugaaaccugaGCUGCAGCu 2 10 500 521 [mm9:15:58732189-58732210:+] 0.5124 145 7 -16.29 -0.5202 MIMAT0003739 mmu-miR-673-5p 75841 Rnf139 gagguuccuggucucGACACUc |||||| guauggauguugaaaCUGUGAa 2 8 99 120 [mm9:15:58731788-58731809:+] 0.6322 120 6 -11.78 -0.1077 MIMAT0003464 mmu-miR-686 75841 Rnf139 agaAGUGGCAGACCCUUCGUUa | ||| || ||||||| agaUAACCUGCU-AGAAGCAAc 2 20 473 493 [mm9:15:58732162-58732182:+] 0.5124 149 7 -12.08 -0.8351 MIMAT0003471 mmu-miR-692 75841 Rnf139 cucacUCCGCGAGUU-UCUCUa || : ||:|| ||||| caaauAGCUUCUUAAUAGAGAu 2 17 258 279 [mm9:15:58731947-58731968:+] 0.5912 120 0 -11.15 -1.1474 MIMAT0003474 mmu-miR-694 75841 Rnf139 gaaguccgUUGUAAAAGUc || :|||||| auagaauaAAAGUUUUCAc 2 12 218 236 [mm9:15:58731907-58731925:+] 0.6966 131 6 -4.73 -0.3514 MIMAT0003479 mmu-miR-669c 75841 Rnf139 uguguguagguguguGUUGAUa |||||| aaauaggcuuguuauCAACUAa 2 8 564 585 [mm9:15:58732253-58732274:+] 0.5420 120 6 -8.26 -0.1095 MIMAT0003480 mmu-miR-297b-5p 75841 Rnf139 ugUACAAGUA--CGUGUGUAUGUa :||| ||| :::||||| | uuGUGUACAUUAUUGUACAUAGAa 2 21 200 223 [mm9:15:58731889-58731912:+] 0.6966 123 0 -13.06 -0.1657 MIMAT0003487 mmu-miR-697 75841 Rnf139 agAGGUGUCCU-GGUCCUACAa |: |:| | ||||||||| cuUUGAUAUAAUCCAGGAUGUg 2 20 587 608 [mm9:15:58732276-58732297:+] 0.5420 154 7 -17.66 -0.2743 MIMAT0003488 mmu-miR-698 75841 Rnf139 ucccuUCCUUUGCUCUUac | ||:||||||| aguauAAGAGACGAGAAga 3 15 404 422 [mm9:15:58732093-58732111:+] 0.4962 138 0 -15.87 -0.1591 MIMAT0003492 mmu-miR-702 75841 Rnf139 cucgccccaUUUCCCACCCGu ||| ||||| | uacacaauaAAAAGGUGGACa 2 13 686 706 [mm9:15:58732375-58732395:+] 0.5106 120 0 -10.53 -0.1086 MIMAT0004839 mmu-miR-743b-5p 75841 Rnf139 acUACCUGUGGUCAGACUUGu || |||| | |:||||| uuAU-GACA-AAAUUUGAACa 2 20 241 259 [mm9:15:58731930-58731948:+] 0.6439 135 0 -13.01 -0.1014 MIMAT0004844 mmu-miR-880 75841 Rnf139 agaUGAGUCUCUCCUACCUCAu ::||| | ||||||| ucaGUUCAUCCAAAAUGGAGUa 2 20 39 60 [mm9:15:58731728-58731749:+] 0.6447 147 7 -13.99 -1.2369 MIMAT0004865 mmu-miR-297c 75841 Rnf139 ugUACAUGUA--CGUGUGUAUGUa :||||||| :::||||| | uuGUGUACAUUAUUGUACAUAGAa 2 21 200 223 [mm9:15:58731889-58731912:+] 0.6966 131 0 -15.34 -0.1689 MIMAT0004882 mmu-miR-466f-3p 75841 Rnf139 cacACAUACACACACACAUac ||| | | |||||| accUGUUUAAAUUUGUGUAca 3 19 188 208 [mm9:15:58731877-58731897:+] 0.6966 130 0 -5.78 -0.4043 MIMAT0004890 mmu-miR-509-5p 75841 Rnf139 uacuaacgguguaagACCUCAu |||||| ucaguucauccaaaaUGGAGUa 2 8 39 60 [mm9:15:58731728-58731749:+] 0.6447 120 6 -14.89 -0.1945 MIMAT0004934 mmu-miR-872 75841 Rnf139 ggacUUGAUU--GUUC-AUUGGAa |||||| |||| |||||| cuaaAACUAAGGCAAGAUAACCUg 2 18 459 482 [mm9:15:58732148-58732171:+] 0.5124 136 6 -14.92 -0.4525 MIMAT0004938 mmu-miR-875-3p 75841 Rnf139 guAUCGGAGUCAUAAAAGUcc ||| | | :|||||| caUAGAAUAAAAGUUUUCAcg 3 20 217 237 [mm9:15:58731906-58731926:+] 0.6966 131 0 -11.08 -0.2557 MIMAT0005834 mmu-miR-466i 75841 Rnf139 aucacacaUACACACACACAUa | || ||||||| uaugcuucACGUCAGUGUGUAa 2 15 62 83 [mm9:15:58731751-58731772:+] 0.6375 146 7 -9.47 -0.8568 MIMAT0005834 mmu-miR-466i 75841 Rnf139 aucacACAUACACACACACAUa ||| | | |||||| ugaccUGUUUAAAUUUGUGUAc 2 18 186 207 [mm9:15:58731875-58731896:+] 0.6966 121 6 -5.98 -0.6324 MIMAT0005838 mmu-miR-669j 75841 Rnf139 acaaacgUACACUCA-UAUACGu ||| |||| |||||| auccaaaAUG-GAGUAAUAUGCu 2 16 46 67 [mm9:15:58731735-58731756:+] 0.6375 125 6 -13.47 -0.7763 MIMAT0005851 mmu-miR-1193 75841 Rnf139 cuAUCAUUUUGCCCACUGGAu |:|| : |||||||| ucUGGUCUCUUUGGUGACCUg 2 20 172 192 [mm9:15:58731861-58731881:+] 0.6966 147 7 -17.30 -1.0286 MIMAT0007864 mmu-miR-1897-5p 75841 Rnf139 gggggagaAAG--AGGUAGGUUUc ||| |:|||||||| guuuaaaaUUCAGUUCAUCCAAAa 2 15 30 53 [mm9:15:58731719-58731742:+] 0.6447 153 7 -12.38 -1.1186 MIMAT0007868 mmu-miR-1903 75841 Rnf139 acAGAGUCCUUCUUCUUCUUcc | | || :| :||||||| agUAUAAGAGACGAGAAGAAaa 3 21 404 425 [mm9:15:58732093-58732114:+] 0.4962 140 0 -11.00 -0.1166 MIMAT0007874 mmu-miR-1904 75841 Rnf139 ggagggaggucuccuCGUCUUg |||||| ugggaaaaugaaaauGCAGAAu 2 8 371 392 [mm9:15:58732060-58732081:+] 0.4959 120 6 -13.76 -0.1014 MIMAT0009393 mmu-miR-1930 75841 Rnf139 ugcgACGUCCAUGAUACCUCca | || | |||||| ucagUUCAUCCAAAAUGGAGua 3 19 39 60 [mm9:15:58731728-58731749:+] 0.6447 122 0 -8.31 -0.1693 MIMAT0009400 mmu-miR-1936 75841 Rnf139 cggucaagugucguccAGUCAAu |||||| gguauuuguuuaaaauUCAGUUc 2 8 23 45 [mm9:15:58731712-58731734:+] 0.6519 120 6 -7.95 -0.2398 MIMAT0009404 mmu-miR-1940 75841 Rnf139 uugACGAGGUGGAAGAG---UC--AGGAGGUa ||| :|| :| : | || ||||||| uggUGCGUCAAUUGUGCCAAAGAUUCCUCCAu 2 25 290 321 [mm9:15:58731979-58732010:+] 0.5912 146 7 -20.44 -0.9109 MIMAT0009417 mmu-miR-1950 75841 Rnf139 acugguauaggaaucUACGUCu |||||| agugggaaaaugaaaAUGCAGa 2 8 369 390 [mm9:15:58732058-58732079:+] 0.4959 120 6 -10.39 -0.2341 MIMAT0009423 mmu-miR-1952 75841 Rnf139 gucuuccUCCCACCUcu | |||||| caauaaaAAGGUGGAca 3 11 690 706 [mm9:15:58732379-58732395:+] 0.5106 122 0 -9.21 -0.2533 MIMAT0009434 mmu-miR-1961 75841 Rnf139 aagauugaugAUGGAGu |||||| acuguaaauaUACCUCu 2 8 146 162 [mm9:15:58731835-58731851:+] 0.6966 120 6 -11.24 -0.2692 MIMAT0009440 mmu-miR-1967 75841 Rnf139 cguagAAGAGGGGUCCU-AGGAGu || | || | || ||||| gucaaUUGUGCCAAAGAUUCCUCc 2 19 296 319 [mm9:15:58731985-58732008:+] 0.5912 122 0 -15.88 -0.5451 MIMAT0009445 mmu-miR-1274a 75841 Rnf139 accgCGGACUUGUCCCUGGACu |:|| ::| |||||| ucugGUCUCUUUGGUGACCUGu 2 19 172 193 [mm9:15:58731861-58731882:+] 0.6966 122 6 -19.21 -0.1795 MIMAT0012773 mmu-miR-767 75841 Rnf139 acgaguCUGUUGGUACCACGu ||: | :||||||| gauaauGAUCA-UAUGGUGCg 2 16 277 296 [mm9:15:58731966-58731985:+] 0.5912 145 7 -15.99 -0.9071 MIMAT0015643 mmu-miR-3472 75841 Rnf139 ccaaggaaggucgaagaCCGAUAau |||||| auaaucuugaguagaaaGGCUAUaa 3 9 426 450 [mm9:15:58732115-58732139:+] 0.4964 120 0 -11.61 -0.1442 MIMAT0000121 mmu-let-7g 75841 Rnf139 uugacauguuugaugAUGGAGu |||||| gugcuacuguaaauaUACCUCu 2 8 141 162 [mm9:15:58731830-58731851:+] 0.6966 120 6 -15.02 -0.2716 MIMAT0000122 mmu-let-7i 75841 Rnf139 uugucguguuugaugAUGGAGu |||||| gugcuacuguaaauaUACCUCu 2 8 141 162 [mm9:15:58731830-58731851:+] 0.6966 120 6 -11.10 -0.2740 MIMAT0000126 mmu-miR-27b 75841 Rnf139 cguCUUGAAUCGGUGACACUu |:|: | | ||||||| uauGGAUGUUGAAACUGUGAa 2 19 100 120 [mm9:15:58731789-58731809:+] 0.6322 150 7 -15.21 -1.1692 MIMAT0000126 mmu-miR-27b 75841 Rnf139 cgucuugaaucGGUGACACUu ::||||||| augcuuuccguUUACUGUGAu 2 11 120 140 [mm9:15:58731809-58731829:+] 0.6644 142 7 -12.57 -0.9980 MIMAT0000128 mmu-miR-30a 75841 Rnf139 gaAGGUCAGCUCCU--ACAAAUgu ||: |:|: || |||||| ggUCUCUUUGGUGACCUGUUUAaa 3 21 175 198 [mm9:15:58731864-58731887:+] 0.6966 131 0 -8.95 -0.1085 MIMAT0000130 mmu-miR-30b 75841 Rnf139 ucgacucaCAUCCUACAAAUgu ||: |||||| ucucuuugGUGACCUGUUUAaa 3 15 177 198 [mm9:15:58731866-58731887:+] 0.6966 122 0 -7.79 -0.1075 MIMAT0000133 mmu-miR-101a 75841 Rnf139 aaGUCAAUAGUGUCAUGACAu | || || ::: |||||| uaCUGUGAU-GUGCUACUGUa 2 20 132 151 [mm9:15:58731821-58731840:+] 0.6644 121 6 -10.62 -0.1335 MIMAT0000140 mmu-miR-128 75841 Rnf139 uuUC-UCUGGCCAAGUGACACu || ||| | |||||||| uuAGUAGA-AGCAUCACUGUGu 2 20 620 640 [mm9:15:58732309-58732329:+] 0.5420 148 7 -16.03 -0.6711 MIMAT0000140 mmu-miR-128 75841 Rnf139 uuucucuGGCCAAGUGACACu :| |||:|||||| aaugcuuUCCGUUUACUGUGa 2 15 119 139 [mm9:15:58731808-58731828:+] 0.6644 142 6 -19.70 -0.1271 MIMAT0000140 mmu-miR-128 75841 Rnf139 uuucucuggccaagUGACACu |||||| guauggauguugaaACUGUGa 2 8 99 119 [mm9:15:58731788-58731808:+] 0.6322 120 6 -13.21 -0.1233 MIMAT0000148 mmu-miR-136 75841 Rnf139 gguAGUAGUUUUGUUUACCUCa ||||| | |||||||| aguUCAUCCA---AAAUGGAGu 2 20 41 59 [mm9:15:58731730-58731748:+] 0.6447 155 7 -16.39 -1.1010 MIMAT0000156 mmu-miR-144 75841 Rnf139 ucauguaguagauAUGACAu |||||| uacugugaugugcUACUGUa 2 8 132 151 [mm9:15:58731821-58731840:+] 0.6644 120 6 -11.90 -0.1374 MIMAT0000158 mmu-miR-146a 75841 Rnf139 uuggguaccUUAAGUCAAG-AGu |||||||||| || uuuguuuaaAAUUCAGUUCAUCc 2 14 27 49 [mm9:15:58731716-58731738:+] 0.6447 129 0 -12.81 -1.2399 MIMAT0000164 mmu-miR-154 75841 Rnf139 gcUUCCGUUGUGCCUAUUGGAu ||||||| |||||||| cuAAGGCAA----GAUAACCUg 2 21 465 482 [mm9:15:58732154-58732171:+] 0.5124 159 7 -20.05 -0.2646 MIMAT0000211 mmu-miR-182 75841 Rnf139 gccaCACUCAAGAUGGUAACGGUUu ||| | || |:: |||||| uaugGUGCG-UCAAUU-GUGCCAAa 2 22 288 310 [mm9:15:58731977-58731999:+] 0.5912 121 6 -16.50 -0.1028 MIMAT0000221 mmu-miR-191 75841 Rnf139 gucGACGAAAACCCUAAGGCAAc |||: | | ||||||| aaaCUGUGAAU-GCUUUCCGUUu 2 21 111 132 [mm9:15:58731800-58731821:+] 0.6322 142 7 -14.70 -0.6850 MIMAT0000235 mmu-miR-202-3p 75841 Rnf139 agaaggguacgcgAUAUGGAGa |||||||| gugcuacuguaaaUAUACCUCu 2 10 141 162 [mm9:15:58731830-58731851:+] 0.6966 145 7 -16.43 -1.2762 MIMAT0000248 mmu-miR-30e 75841 Rnf139 gaAGGUCAGUUCCU--ACAAAUgu ||: |::: || |||||| ggUCUCUUUGGUGACCUGUUUAaa 3 21 175 198 [mm9:15:58731864-58731887:+] 0.6966 127 0 -8.62 -0.1075 MIMAT0000514 mmu-miR-30c 75841 Rnf139 cgacucucaCAUCCUACAAAUgu ||: |||||| gucucuuugGUGACCUGUUUAaa 3 15 176 198 [mm9:15:58731865-58731887:+] 0.6966 122 0 -7.54 -0.1075 MIMAT0000515 mmu-miR-30d 75841 Rnf139 gaAGGUCAGCCCCU--ACAAAUgu ||: |:|| || |||||| ggUCUCUUUGGUGACCUGUUUAaa 3 21 175 198 [mm9:15:58731864-58731887:+] 0.6966 135 0 -10.14 -0.1096 MIMAT0000533 mmu-miR-26a 75841 Rnf139 ucgGAUAGGACCUAAUGA-ACUu || ||| | ||||| ||| augCUUUCC--GUUUACUGUGAu 2 20 120 140 [mm9:15:58731809-58731829:+] 0.6644 120 0 -11.77 -0.8439 MIMAT0000537 mmu-miR-27a 75841 Rnf139 cgcCUUGAAUCGGUGACACUu |:|: | | ||||||| uauGGAUGUUGAAACUGUGAa 2 19 100 120 [mm9:15:58731789-58731809:+] 0.6322 150 7 -18.08 -1.1692 MIMAT0000537 mmu-miR-27a 75841 Rnf139 cgccuugaaucGGUGACACUu ::||||||| augcuuuccguUUACUGUGAu 2 11 120 140 [mm9:15:58731809-58731829:+] 0.6644 142 7 -12.57 -0.9980 MIMAT0000541 mmu-miR-96 75841 Rnf139 ucGU-UUUUACACG---AUCACGGUUu || | ::|| |: | ||||||| auCAUAUGGUGCGUCAAUUGUGCCAAa 2 22 284 310 [mm9:15:58731973-58731999:+] 0.5912 143 7 -17.34 -1.1904 MIMAT0000580 mmu-miR-148b 75841 Rnf139 uguuucAAGACACU--ACG-UGACu | |||||| ||| |||| uccguuUACUGUGAUGUGCUACUGu 2 17 126 150 [mm9:15:58731815-58731839:+] 0.6644 123 0 -19.04 -1.1402 MIMAT0000582 mmu-miR-338-3p 75841 Rnf139 guugUUUUAGUGACUACGACCu || || || ||||||| uuggAAUAUAUCUAAUGCUGGa 2 19 326 347 [mm9:15:58732015-58732036:+] 0.5912 158 7 -15.97 -1.1489 MIMAT0000616 mmu-miR-101b 75841 Rnf139 aagucgauagugucAUGACAu |||||| uuacugugaugugcUACUGUa 2 8 131 151 [mm9:15:58731820-58731840:+] 0.6644 120 6 -12.15 -0.1348 MIMAT0000656 mmu-miR-139-5p 75841 Rnf139 gaccucugUGCACG-UGACAUcu |:|||| |||||| uuacugugAUGUGCUACUGUAaa 3 15 131 153 [mm9:15:58731820-58731842:+] 0.6644 137 0 -17.91 -0.1883 MIMAT0000662 mmu-miR-216a 75841 Rnf139 aguGUCAACGGUCGACUCUAAu ||| :| | ||||||| uuuCAGACUUCUGAUGAGAUUa 2 20 666 687 [mm9:15:58732355-58732376:+] 0.5106 151 7 -14.44 -0.9526 MIMAT0000663 mmu-miR-218 75841 Rnf139 ugUACCAAUCUAGUUCGUGUu :|| || | |||||||| caGUGUGUA-ACCAAGCACAa 2 20 74 93 [mm9:15:58731763-58731782:+] 0.6375 153 7 -14.39 -0.5659 MIMAT0000667 mmu-miR-33 75841 Rnf139 acguuacgUUGAUGUUACGUg ||: | |||||| agugggaaAAUGAAAAUGCAg 2 14 369 389 [mm9:15:58732058-58732078:+] 0.4959 121 6 -8.05 -0.1107 MIMAT0000679 mmu-miR-217 75841 Rnf139 aggucagucaaggacUACGUCau |||||| agugggaaaaugaaaAUGCAGaa 3 9 369 391 [mm9:15:58732058-58732080:+] 0.4959 120 0 -11.02 -0.1773 MIMAT0000739 mmu-miR-375 75841 Rnf139 agugcgcucggcuuGCUUGUUu :|||||| uuuaugacaaaauuUGAACAAa 2 9 240 261 [mm9:15:58731929-58731950:+] 0.6439 124 6 -11.47 -0.4467 MIMAT0004745 mmu-miR-384-5p 75841 Rnf139 uguaACGGAUC-CUUAACAAAUgu | ::|:| || |||||| ggucUCUUUGGUGACCUGUUUAaa 3 20 175 198 [mm9:15:58731864-58731887:+] 0.6966 130 0 -9.03 -0.1096 MIMAT0003182 mmu-miR-494 75841 Rnf139 cuccaaagGGCACAUAC-AAAGu |:||| ||| |||| uguugaaaCUGUGAAUGCUUUCc 2 15 106 128 [mm9:15:58731795-58731817:+] 0.6322 122 0 -12.66 -0.9275 MIMAT0003729 mmu-miR-216b 75841 Rnf139 agUGUAAACGGA-CGUCUCUAaa |:| | |:| :|||||| aaAUAGCUUCUUAAUAGAGAUaa 3 21 259 281 [mm9:15:58731948-58731970:+] 0.5912 127 0 -9.30 -0.1311 MIMAT0003450 mmu-miR-488 75841 Rnf139 cugGUUCUUUGUC-GGAAAGUu || |||| | ||||||| gagCAUAAAACUGUCCUUUCAg 2 19 650 671 [mm9:15:58732339-58732360:+] 0.5263 157 7 -17.12 -0.5407 MIMAT0003456 mmu-miR-495 75841 Rnf139 uucuucacgugguacAAACAAa |||||| cuaaucauugagguaUUUGUUu 2 8 12 33 [mm9:15:58731701-58731722:+] 0.6519 120 6 -7.83 -0.1245 MIMAT0003475 mmu-miR-146b 75841 Rnf139 ucggAUACCUUAAGUCAAG-AGu | | |||||||||| || uuugUUUAAAAUUCAGUUCAUCc 2 19 27 49 [mm9:15:58731716-58731738:+] 0.6447 130 0 -14.56 -1.2399 MIMAT0003482 mmu-miR-499 75841 Rnf139 uuUGUAGUGAC--GUUCAGAAUu |::| :||| :|||||||| ggAUGU-GCUGUCUAAGUCUUAg 2 20 602 623 [mm9:15:58732291-58732312:+] 0.5420 152 7 -14.66 -0.5402 MIMAT0004869 mmu-miR-421 75841 Rnf139 cgCGGGUUAAUUAC-AGACAACUa |:|: ||::|| ||||| | ugGUCUCUUUGGUGACCUGUUUAa 2 22 174 197 [mm9:15:58731863-58731886:+] 0.6966 124 0 -12.75 -0.1006 MIMAT0004896 mmu-miR-590-3p 75841 Rnf139 ugaUCGAAUAUGUAUUUUAAu :|: | |:: ||||||| ugaGGUAUUUGUUUAAAAUUc 2 19 20 40 [mm9:15:58731709-58731729:+] 0.6519 150 7 -4.29 -1.1546 MIMAT0004896 mmu-miR-590-3p 75841 Rnf139 ugauCGAAUAUG-UAUUUUAAu |:|| ||: | |||||| ucacGUUUUUAUGACAAAAUUu 2 18 233 254 [mm9:15:58731922-58731943:+] 0.6439 128 6 -5.94 -0.1223 MIMAT0004937 mmu-miR-875-5p 75841 Rnf139 guGGACUAUU-UUGACUCCAUAu ::| ||| |:|||||||| caUUUACUAAUCAUUGAGGUAUu 2 21 6 28 [mm9:15:58731695-58731717:+] 0.6519 155 7 -16.87 -0.7474 MIMAT0004941 mmu-miR-544 75841 Rnf139 cucgaacgAUUUUUACGUCUUa |:||||||||||| ugggaaaaUGAAAAUGCAGAAu 2 15 371 392 [mm9:15:58732060-58732081:+] 0.4959 166 7 -19.76 -1.1205 MIMAT0005850 mmu-miR-1192 75841 Rnf139 uuaaaccagacaaacAAACAAa |||||| cuaaucauugagguaUUUGUUu 2 8 12 33 [mm9:15:58731701-58731722:+] 0.6519 120 6 -8.75 -0.1258

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G068687 Rnf139 Mus musculus 75841

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rnf139 mmu-miR-136 beg:41 end:60 pic:3' GGTAGTAGTTTTGTTTACCTCA 5'& ||||| ||||||||| &5' ---TCATCCA---AAATGGAGT 3' Rnf139 mmu-miR-27a beg:113 end:140 pic:3' CGCCT-TGAAT--C-GGTGACACTT 5'& |.| .||| | ..||||||| &5' GTGAATGCTTTCCGTTTACTGTGA- 3' Rnf139 mmu-miR-697 beg:590 end:608 pic:3' AGAGGTGTCCTGGTCCTACAA 5'& .|.| ||||||||| &5' ----TATAAT-CCAGGATGT- 3' Rnf139 mmu-miR-154 beg:464 end:482 pic:3' GCTTCCGTTGTGCCTATTGGAT 5'& ||||||| ||||||||. &5' --AAGGCAA----GATAACCTG 3' Rnf139 mmu-miR-1897-5p beg:35 end:53 pic:3' GGGGGAGAAAG--AGGTAGGTTTC 5'& ||| |.|||||||| &5' --------TTCAGTTCATCCAAA- 3' Rnf139 mmu-miR-767 beg:280 end:296 pic:3' ACGAGTCTGTTGGTACCACGT 5'& ||. .||||||| &5' ------GATCA-TATGGTGC- 3' Rnf139 mmu-miR-128 beg:622 end:640 pic:3' TTTCTCTGGCCAAGTGACACT 5'& ||| | |||||||| &5' --AGAAGCA---TCACTGTG- 3' Rnf139 mmu-miR-291a-5p beg:579 end:594 pic:3' TCTCTCCCGGAGGTGAAACTAC 5'& || |||||||| &5' ---------CTAAACTTTGAT- 3' Rnf139 mmu-miR-686 beg:475 end:493 pic:3' AGAAGTGGCAGACCCTTCGTTA 5'& ||| || ||||||| &5' -----ACCTGCTA-GAAGCAA- 3' Rnf139 mcmv-miR-m88-1 beg:660 end:679 pic:3' TCTGGGGCTGTAGCTGAAGAC 5'& .||. || |||||||| &5' ---TCCTTTCA--GACTTCTG 3' Rnf139 mmu-miR-875-5p beg:15 end:28 pic:3' GTGGACTATTTTGACTCCATAT 5'& |.|||||||| &5' -----------ATTGAGGTAT- 3' Rnf139 mmu-miR-434-3p beg:521 end:538 pic:3' TCCTCAGCTCACTACCAAGTTT 5'& ||| |||||||| &5' -------GAGCTA-GGTTCAAA 3' Rnf139 mmu-let-7b beg:143 end:174 pic:3' TTGGTGTGT---TGGA-----TGATGGAGT 5'& || .| |||| |.|||.|| &5' -ACTGTAAATATACCTCTTTAATTACTTC- 3' Rnf139 mmu-miR-101b beg:131 end:152 pic:3' AAGTCGATAGTGT-C-ATGACAT 5'& ||.| |.. | ||||||| &5' -----CTGTGATGTGCTACTGTA 3' Rnf139 mmu-miR-1193 beg:171 end:193 pic:3' CTATCATTTTGCCCACTGGAT 5'& |.|| ||||||||. &5' --TGGTCTCTTTGGTGACCTG 3' Rnf139 mmu-miR-124star beg:111 end:124 pic:3' TAGTTCCAGGCGACACTTGTGC 5'& |||||||..| &5' -----------CTGTGAATGC- 3' Rnf139 mmu-miR-127star beg:52 end:71 pic:3' TAGTCTCGGGAGACTCGAAGTC 5'& .|||. | |||||| &5' ---GGAGTAATAT--GCTTCA- 3' Rnf139 mmu-miR-128 beg:124 end:140 pic:3' TTTCTCTGGCCAAGTGACACT 5'& || |||.||||||| &5' -------CC-GTTTACTGTGA 3' Rnf139 mmu-miR-134 beg:175 end:195 pic:3' GGGGAGACCAGTTGGTCAGTGT 5'& |.||.|||| .||| ||. &5' -CTCTTTGGT-GACCTGTT--- 3' Rnf139 mmu-miR-144 beg:129 end:152 pic:3' TCATG-TAGTAGAT-ATGACAT 5'& ||| .| || |. ||||||| &5' --TACTGTGATGTGCTACTGTA 3' Rnf139 mmu-miR-146b beg:218 end:236 pic:3' TCGGATACCTTAAG-TCAAGAGT 5'& |||| ||||.||| &5' --------GAATAAAAGTTTTCA 3' Rnf139 mmu-miR-17star beg:505 end:520 pic:3' GATGTTCACGGGAGTGACGTCA 5'& ||. .|||||| &5' ---------CCTGAGCTGCAG- 3' Rnf139 mmu-miR-181a beg:86 end:110 pic:3' TGAGTGGC--TGTCGCAACTTACAA 5'& ||| ||||. ||.||||| &5' ---CACAAAAACAGTA-TGGATGTT 3' Rnf139 mmu-miR-181b beg:93 end:110 pic:3' TGGGTGGCTGTCGTTACTTACAA 5'& ||||. |||.||||| &5' --------ACAGT-ATGGATGTT 3' Rnf139 mmu-miR-181d beg:86 end:110 pic:3' TGGGTGGCTGTTGT--TACTTACAA 5'& ||| |||| |||.||||| &5' ---CACAAA-AACAGTATGGATGTT 3' Rnf139 mmu-miR-1948 beg:599 end:618 pic:3' GACATGCTCACGAGACGGATTT 5'& | ||. |||.||||. &5' ------GGATGTGCTGTCTAAG 3' Rnf139 mmu-miR-1968 beg:505 end:519 pic:3' TCAGGTGGTAGGAATTGTCGACGT 5'& ||| ||||||| &5' ----------CCTG---AGCTGCA 3' Rnf139 mmu-miR-199a-3p beg:124 end:151 pic:3' ATTGGTT----ACACGTC-TGATGACA 5'& ||. |||| .||||||| &5' ---CCGTTTACTGTGATGTGCTACTGT 3' Rnf139 mmu-miR-199a-5p beg:333 end:347 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& ||| ||..|||| &5' ----------TCT-AATGCTGG- 3' Rnf139 mmu-miR-199b beg:124 end:151 pic:3' ATTGGTT----ACACGTC-TGATGACA 5'& ||. |||| .||||||| &5' ---CCGTTTACTGTGATGTGCTACTGT 3' Rnf139 mmu-miR-202-3p beg:141 end:163 pic:3' AGAAGGGT-ACGCG-ATATGGAGA 5'& |.| ||. ||||||||| &5' -----CTACTGTAAATATACCTCT 3' Rnf139 mmu-miR-20bstar beg:501 end:520 pic:3' GATCTTCACGAGTGTGACGTCA 5'& ||| || .|||||| &5' ---GAAAC-CTGA-GCTGCAG- 3' Rnf139 mmu-miR-2135 beg:657 end:678 pic:3' CAAAGCCGGGGT--TCTGGAGA 5'& | |.||. ||||.||| &5' ----CTGTCCTTTCAGACTTCT 3' Rnf139 mmu-miR-214star beg:66 end:91 pic:3' CGTGTCGTT-CACATCTGTCCGT 5'& |||. ||. ||||| || ||| &5' -CACGTCAGTGTGTAACCAAGCA 3' Rnf139 mmu-miR-218 beg:73 end:94 pic:3' TGTAC-CAATCTAGTTCGTGTT 5'& .|| || ||||||||| &5' --GTGTGTAAC--CAAGCACAA 3' Rnf139 mmu-miR-27a beg:100 end:121 pic:3' CGCCTTGAATCGGTGACACTT 5'& ||| | |||||||| &5' --GGATGTT-GAAACTGTGAA 3' Rnf139 mmu-miR-27b beg:100 end:121 pic:3' CGTCTTGAATCGGTGACACTT 5'& |.|. | |||||||| &5' ---GGATGTTGAAACTGTGAA 3' Rnf139 mmu-miR-295 beg:0 end:11 pic:3' TCTGAGTTTTCATCATCGTGAAA 5'& |||||||.|| &5' ------------AGTAGCATTT- 3' Rnf139 mmu-miR-320 beg:340 end:358 pic:3' AGCGGGAGAGTTG-GGTCGAAAA 5'& || .|| |.||||||| &5' -------CTGGACTCTAGCTTTT 3' Rnf139 mmu-miR-335-3p beg:365 end:385 pic:3' CCAGTCCTCGTTA--TTACTTTTT 5'& ||| . |||||||| &5' ------GAGTGGGAAAATGAAAA- 3' Rnf139 mmu-miR-338-3p beg:327 end:348 pic:3' GTTGTTTTAGT--GACTACGACCT 5'& ..||| || |||||||| &5' ----GGAATATATCTAATGCTGGA 3' Rnf139 mmu-miR-361 beg:660 end:683 pic:3' CATGGGGACCTCT-AAGACTATT 5'& | ||.| ||| |||||||.| &5' -TGTCCTTTCAGACTTCTGATGA 3' Rnf139 mmu-miR-382 beg:247 end:269 pic:3' GCTTAGGTGGTGCTTGTTGAAG 5'& ||| . || ||.|.|||| &5' --AATTTGA-ACAAATAGCTTC 3' Rnf139 mmu-miR-382star beg:103 end:123 pic:3' TTTTTCACAACA--GGCACTTACT 5'& ||||| |.||||||| &5' ------TGTTGAAACTGTGAATG- 3' Rnf139 mmu-miR-383 beg:167 end:180 pic:3' TCGGTGTCAGTGGAAGACTAGA 5'& ||||||.||| &5' ------------CTTCTGGTCT 3' Rnf139 mmu-miR-409-5p beg:172 end:192 pic:3' TACGTTTCAACGAGCCCATTGGA 5'& .|| ||. |||.|||| &5' ------GGTCTCTTTGGTGACCT 3' Rnf139 mmu-miR-421 beg:94 end:112 pic:3' CGCGGGTTAATTACAGACAACTA 5'& ||.| ||| |||||| &5' -----CAGT--ATGGATGTTGA- 3' Rnf139 mmu-miR-450b-5p beg:369 end:392 pic:3' ATAAGTCCTTGTATG---ACGTTTT 5'& .|||| ||. ||||.|| &5' -----GGGAAAATGAAAATGCAGAA 3' Rnf139 mmu-miR-465a-5p beg:179 end:200 pic:3' AGTGTAGTCAC-GGTAAGATTTAT 5'& | ||| || |.||||| &5' -----TTGGTGACCTGTTTAAAT- 3' Rnf139 mmu-miR-465c-5p beg:179 end:200 pic:3' GTCTAGTCGC-GGTAAGATTTAT 5'& | |.| || |.||||| &5' ----TTGGTGACCTGTTTAAAT- 3' Rnf139 mmu-miR-467b beg:0 end:13 pic:3' GTATATGTACGTCCGTGAATG 5'& |.| |||.|||| &5' ---------GTA-GCATTTAC 3' Rnf139 mmu-miR-488 beg:650 end:672 pic:3' CTGGTTCTTTGTC-GGAAAGTT 5'& || |||| | |||||||. &5' ---CATAAAACTGTCCTTTCAG 3' Rnf139 mmu-miR-544 beg:369 end:393 pic:3' CTCGAACGATTTTTACGTCTTA 5'& |.| |.|||||||||||| &5' GGGAAAA-TGAAAATGCAGAAT 3' Rnf139 mmu-miR-666-3p beg:510 end:522 pic:3' TCGTCCGCTAGTGCGACGTCGG 5'& ||||||||. &5' -------------GCTGCAGCT 3' Rnf139 mmu-miR-684 beg:364 end:380 pic:3' AACTGAACTT-CCCTTTTGA 5'& |||. |||||||. &5' ------TGAGTGGGAAAAT- 3' Rnf139 mmu-miR-687 beg:586 end:607 pic:3' AGTAACGACGTAAGGTCCTATC 5'& ||| .| ||||||||. &5' ---TTGATATAATCCAGGATG- 3' Rnf139 mmu-miR-690 beg:341 end:358 pic:3' AAACCAACACTCGGATCGGAAA 5'& || || |||||.||| &5' ------TG-GACTCTAGCTTTT 3' Rnf139 mmu-miR-713 beg:61 end:80 pic:3' CGACACACGGA----AGTCACGT 5'& |||.| ||||||. &5' ------TGCTTCACGTCAGTGT- 3' Rnf139 mmu-miR-743b-5p beg:242 end:260 pic:3' ACTACCTGTGGTCAGACTTGT 5'& |||| |.|||||| &5' -----GACAAAA-TTTGAACA 3' Rnf139 mmu-miR-760 beg:511 end:529 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& | ||| |..|||||. &5' ---CTGCAG-CTTAGAGCT- 3' Rnf139 mmu-miR-7a beg:441 end:462 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& .| |.||||| ||||||.| &5' GCTATAAAAT-----GTCTTCTA 3' Rnf139 mmu-miR-7b beg:441 end:462 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& .| |.||||| ||||||.| &5' GCTATAAAAT-----GTCTTCTA 3' Rnf139 mmu-miR-879 beg:603 end:622 pic:3' CCGAATCTCGATA--TTCGGAGA 5'& | |||.| |||.||. &5' ------GTGCTGTCTAAGTCTT- 3' Rnf139 mmu-miR-880 beg:37 end:61 pic:3' AGATGAGTCTCTCCTACCTCAT 5'& || .||| |||||||| &5' TCAGTTCATCCAAAATGGAGTA 3' Rnf139 mmu-miR-9 beg:292 end:313 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& |.|. .||||||| &5' ---TGCGTCAATTGTGCCAAAGA 3' Rnf139 mmu-miR-96 beg:289 end:311 pic:3' TCGTTTTTACACGAT-----CACGGTTT 5'& |||| |||||||| &5' ---------GTGCGTCAATTGTGCCAAA 3' Rnf139 mmu-miR-191 beg:118 end:132 pic:3' GTCGACGAAAACCCTAAGGCAAC 5'& |||| ||||||| &5' ----TGCT-------TTCCGTT- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rnf139 RAID00030488 mmu-miR-154-5p miRNA MIMAT0000164 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID00067271 mmu-miR-128-3p miRNA MIMAT0000140 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6308 Rnf139 RAID00081493 mmu-miR-9-5p miRNA MIMAT0000142 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID00169488 mmu-miR-382-3p miRNA MIMAT0004691 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID00179217 mmu-miR-217-5p miRNA MIMAT0000679 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID00353871 mmu-miR-713 miRNA MIMAT0003504 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID00491467 mmu-miR-27b-3p miRNA MIMAT0000126 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6559 Rnf139 RAID00606480 mmu-miR-3112-5p miRNA MIMAT0014955 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID00610390 mmu-miR-875-5p miRNA MIMAT0004937 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6559 Rnf139 RAID00731700 mmu-miR-409-5p miRNA MIMAT0004746 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID00787861 mmu-miR-26a-5p miRNA MIMAT0000533 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6308 Rnf139 RAID00790873 mmu-miR-191-5p miRNA MIMAT0000221 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6559 Rnf139 RAID00816241 mmu-miR-880-3p miRNA MIMAT0004844 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID00919427 mmu-miR-338-3p miRNA MIMAT0000582 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID00960774 mmu-miR-183-5p miRNA MIMAT0000212 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01021274 mmu-miR-452-5p miRNA MIMAT0001637 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01102086 mmu-miR-1897-5p miRNA MIMAT0007864 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01119230 mmu-miR-6962-5p miRNA MIMAT0027824 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01145487 mmu-miR-15b-5p miRNA MIMAT0000124 Rnf139 mRNA 75841 CLIP-seq 0.5483 Rnf139 RAID01192952 mmu-miR-466l-3p miRNA MIMAT0005830 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01217392 mmu-miR-30d-5p miRNA MIMAT0000515 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01230248 mmu-miR-1902 miRNA MIMAT0007863 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01381688 mmu-miR-144-3p miRNA MIMAT0000156 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6559 Rnf139 RAID01418454 mmu-miR-6539 miRNA MIMAT0025584 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01432243 mmu-miR-495-3p miRNA MIMAT0003456 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6308 Rnf139 RAID01441441 mmu-miR-1192 miRNA MIMAT0005850 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6308 Rnf139 RAID01460998 mmu-miR-3102-3p.2-3p miRNA MIMAT0014935 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01464141 mmu-miR-139-5p miRNA MIMAT0000656 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6308 Rnf139 RAID01522043 mmu-miR-216a-5p miRNA MIMAT0000662 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01584142 mmu-miR-30e-5p miRNA MIMAT0000248 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01624098 mmu-miR-6344 miRNA MIMAT0025087 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01646157 mmu-miR-370-5p miRNA MIMAT0017174 Rnf139 mRNA 75841 Prediction 0.2202 Rnf139 RAID01749909 mmu-let-7i-5p miRNA MIMAT0000122 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6308 Rnf139 RAID01757535 mmu-miR-7652-3p miRNA MIMAT0029811 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01814300 mmu-miR-582-3p miRNA MIMAT0005292 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID01927245 mmu-miR-488-3p miRNA MIMAT0003450 Rnf139 mRNA 75841 Prediction 0.2381 Rnf139 RAID02029263 mmu-miR-27a-3p miRNA MIMAT0000537 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6478 Rnf139 RAID02092487 mmu-miR-7231-3p miRNA MIMAT0028431 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02097982 mmu-miR-7013-3p miRNA MIMAT0027931 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02099411 mmu-miR-582-5p miRNA MIMAT0005291 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02163570 mmu-miR-455-3p miRNA MIMAT0003742 Rnf139 mRNA 75841 CLIP-seq 0.5483 Rnf139 RAID02209184 mmu-miR-691 miRNA MIMAT0003470 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02220751 mmu-miR-375-3p miRNA MIMAT0000739 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6478 Rnf139 RAID02256795 mmu-miR-7688-3p miRNA MIMAT0029907 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02306945 mmu-miR-3473c miRNA MIMAT0020614 Rnf139 mRNA 75841 CLIP-seq 0.5483 Rnf139 RAID02316888 mmu-miR-218-5p miRNA MIMAT0000663 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6559 Rnf139 RAID02326654 mmu-miR-670-3p miRNA MIMAT0017242 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02421212 mmu-miR-202-3p miRNA MIMAT0000235 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6559 Rnf139 RAID02423336 mmu-miR-6929-3p miRNA MIMAT0027759 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02482954 mmu-miR-33-5p miRNA MIMAT0000667 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02491361 mmu-miR-686 miRNA MIMAT0003464 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02570552 mmu-miR-449c-3p miRNA MIMAT0022715 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02632378 mmu-let-7g-5p miRNA MIMAT0000121 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6308 Rnf139 RAID02681668 mmu-miR-883b-3p miRNA MIMAT0004851 Rnf139 mRNA 75841 CLIP-seq 0.5483 Rnf139 RAID02703271 mmu-miR-7213-3p miRNA MIMAT0028395 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02778053 mmu-miR-7002-3p miRNA MIMAT0027907 Rnf139 mRNA 75841 Prediction 0.2202 Rnf139 RAID02831810 mmu-miR-148b-3p miRNA MIMAT0000580 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6308 Rnf139 RAID02840403 mmu-miR-384-5p miRNA MIMAT0004745 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02861970 mmu-miR-494-3p miRNA MIMAT0003182 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6308 Rnf139 RAID02870763 mmu-miR-376c-3p miRNA MIMAT0003183 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02898153 mmu-let-7j miRNA MIMAT0025123 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02898517 mmu-miR-329-3p miRNA MIMAT0000567 Rnf139 mRNA 75841 CLIP-seq 0.5483 Rnf139 RAID02953096 mmu-miR-146b-5p miRNA MIMAT0003475 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6308 Rnf139 RAID02986266 mmu-miR-505-3p miRNA MIMAT0003513 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID02994462 mmu-miR-3078-3p miRNA MIMAT0014865 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03022160 mmu-miR-883a-3p miRNA MIMAT0004849 Rnf139 mRNA 75841 CLIP-seq 0.5483 Rnf139 RAID03025638 mmu-miR-7216-3p miRNA MIMAT0028401 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03060472 mmu-miR-1193-3p miRNA MIMAT0005851 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03083713 mmu-miR-182-5p miRNA MIMAT0000211 Rnf139 mRNA 75841 Prediction 0.2381 Rnf139 RAID03087633 mmu-miR-136-5p miRNA MIMAT0000148 Rnf139 mRNA 75841 NGS (Next Generation Sequencing)//CLIP-seq//Prediction 0.7414 Rnf139 RAID03230316 mmu-miR-7a-1-3p miRNA MIMAT0004670 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03232421 mmu-miR-499-5p miRNA MIMAT0003482 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03252045 mmu-miR-421-3p miRNA MIMAT0004869 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6478 Rnf139 RAID03267654 mmu-miR-101a-3p miRNA MIMAT0000133 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6559 Rnf139 RAID03326829 mmu-miR-146a-5p miRNA MIMAT0000158 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6308 Rnf139 RAID03328353 mmu-miR-5107-3p miRNA MIMAT0022985 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03329085 mmu-miR-883a-5p miRNA MIMAT0004848 Rnf139 mRNA 75841 CLIP-seq 0.5483 Rnf139 RAID03336287 mmu-miR-590-3p miRNA MIMAT0004896 Rnf139 mRNA 75841 Prediction 0.2202 Rnf139 RAID03358492 mmu-miR-30c-5p miRNA MIMAT0000514 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03435065 mmu-miR-222-5p miRNA MIMAT0017061 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03443912 mmu-miR-6374 miRNA MIMAT0025118 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03514437 mmu-miR-362-3p miRNA MIMAT0004684 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6308 Rnf139 RAID03538036 mmu-miR-6416-3p miRNA MIMAT0025171 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03617697 mmu-miR-216b-5p miRNA MIMAT0003729 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03661076 mmu-miR-30b-5p miRNA MIMAT0000130 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03735166 mmu-miR-96-5p miRNA MIMAT0000541 Rnf139 mRNA 75841 Prediction 0.2455 Rnf139 RAID03739554 mmu-let-7c-1-3p miRNA MIMAT0004622 Rnf139 mRNA 75841 Prediction 0.2202 Rnf139 RAID03813364 mmu-miR-7116-3p miRNA MIMAT0028130 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03867904 mmu-let-7d-5p miRNA MIMAT0000383 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03890736 mmu-miR-466i-3p miRNA MIMAT0005834 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03928424 mmu-miR-6928-3p miRNA MIMAT0027757 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03949169 mmu-miR-7221-5p miRNA MIMAT0028410 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03949372 mmu-miR-6951-3p miRNA MIMAT0027803 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03969222 mmu-miR-544-3p miRNA MIMAT0004941 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID03971614 mmu-miR-30a-5p miRNA MIMAT0000128 Rnf139 mRNA 75841 Prediction 0.1828 Rnf139 RAID04013590 mmu-miR-101b-3p miRNA MIMAT0000616 Rnf139 mRNA 75841 CLIP-seq//Prediction 0.6592