DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Nod1; Card4 ATTTA 467-3328 4305-4309 Nod1; Card4 WWATTTAWW 467-3328 4303-4311 Nod1; Card4 WWWATTTAWWW 467-3328 4302-4312

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004519 mmu-let-7g* 107607 Nod1 cguUCCGUCACCG-GACAUGUCa || | | | |||||||| cuuAGUCCCUCUCACUGUACAGg 2 20 462 484 [mm9:6:54874447-54874469:-] 0.5452 146 7 -13.36 -0.1746 MIMAT0004522 mmu-miR-27b* 107607 Nod1 caagugguuaGUCGAUUC-GAGa |||:|||| ||| ugacuggacaCAGUUAAGACUCa 2 13 826 848 [mm9:6:54874083-54874105:-] 0.5218 120 0 -14.04 -0.4297 MIMAT0004524 mmu-miR-30b* 107607 Nod1 cugcaUUUGUA-GGUGUA-GGGUc ||:||| ||||| |||| aagcaAAGCAUGGCACAUACCCAc 2 18 869 892 [mm9:6:54874039-54874062:-] 0.5286 128 0 -16.53 -0.1022 MIMAT0000137 mmu-miR-126-5p 107607 Nod1 gcgcaugguuuucAUUAUUac |||||| ccaguucauuuguUAAUAAaa 3 9 955 975 [mm9:6:54873956-54873976:-] 0.6255 120 0 -2.99 -0.2185 MIMAT0003473 mmu-miR-133a* 107607 Nod1 uaaaccAAGGUAAAAUGGUCg ||:: ||||||||| gaauuuUUUUUUUUUACCAGu 2 16 657 677 [mm9:6:54874254-54874274:-] 0.5049 159 7 -12.33 -1.0433 MIMAT0004572 mmu-miR-290-3p 107607 Nod1 cccGAAUUUUGAUC-CGCCGU-GAAa || |||:| || |||| ||| ccaCUCAAAGCCAGCAGGGCAUCUUc 2 22 227 252 [mm9:6:54874679-54874704:-] 0.5283 124 0 -12.83 -0.2447 MIMAT0000370 mmu-miR-292-3p 107607 Nod1 ugUGAGUUUUGGAC-CGCCGU-GAAa |||||||:|| | |||| ||| ccACUCAAAGCCAGCAGGGCAUCUUc 2 23 227 252 [mm9:6:54874679-54874704:-] 0.5283 137 0 -24.58 -0.2447 MIMAT0000376 mmu-miR-298 107607 Nod1 cccuuCUU-GUCGGGAGGAGACGg ||: | ||:|||||||| auucuGAGUCCUCCUUCCUCUGCu 2 19 440 463 [mm9:6:54874468-54874491:-] 0.5452 157 7 -24.05 -0.7026 MIMAT0004660 mmu-miR-19a* 107607 Nod1 caucacguugauacGUUUUGAu ||||||| uccugagaucccaaCAAAACUc 2 9 752 773 [mm9:6:54874158-54874179:-] 0.5150 140 7 -7.60 -0.3120 MIMAT0005444 mmu-miR-218-2* 107607 Nod1 gcgCCACGAACUGUCUUGGUAc || |: | | :||||||| cagGGAGUCUUA-GGAACCAUc 2 20 202 222 [mm9:6:54874709-54874729:-] 0.5258 149 7 -13.25 -0.1617 MIMAT0004670 mmu-miR-7a* 107607 Nod1 auACCGUCUGACACUAAACAAc || ||| | | ||||||| uuUGCCAG--U-UCAUUUGUUa 2 21 951 969 [mm9:6:54873962-54873980:-] 0.6255 147 7 -6.36 -1.1168 MIMAT0000706 mmu-miR-362-5p 107607 Nod1 uaaGUGUG-GAUCCA---AG-GU-UCCUAa :|| | |||||| || || ||||| cgaUACCCUCUAGGUCAGUCUCAGAGGAUc 2 22 595 624 [mm9:6:54874307-54874336:-] 0.5286 122 0 -18.29 -0.1619 MIMAT0000742 mmu-miR-378* 107607 Nod1 ugugUCC-UGGACCUCAGUCCUc ||| :||| ||||||| agcaAGGUGCCU---GUCAGGAg 2 19 98 117 [mm9:6:54874814-54874833:-] 0.5258 145 7 -24.49 -0.1036 MIMAT0003388 mmu-miR-376b* 107607 Nod1 auugguaucuucCUUAUAGGUg | ||||||| aaagaucucccuGCAUAUCCAc 2 11 258 279 [mm9:6:54874652-54874673:-] 0.5309 142 7 -11.56 -0.1228 MIMAT0003127 mmu-miR-484 107607 Nod1 uagcCCUCC-CCUGACU-CGGACu ||||| || || ||||| cagaGGAGGCCAACAGACGCCUGg 2 19 307 330 [mm9:6:54874601-54874624:-] 0.5309 121 0 -21.59 -0.1010 MIMAT0005295 mmu-miR-376c* 107607 Nod1 auuuguaucuucCUUAUAGGUg | ||||||| aaagaucucccuGCAUAUCCAc 2 11 258 279 [mm9:6:54874652-54874673:-] 0.5309 142 7 -10.58 -0.1228 MIMAT0005460 mmu-miR-1224 107607 Nod1 gagguggAGGGGU-CAGGAGUg ||::|| ||||||| gaaaguaUCUUCAUGUCCUCAg 2 15 793 814 [mm9:6:54874117-54874138:-] 0.5150 153 7 -21.13 -0.4702 MIMAT0003733 mmu-miR-665 107607 Nod1 ucccuggagucgGAGGACCa ||||||| ------cggacgCUCCUGGg 2 9 1 14 [mm9:6:54874917-54874930:-] 0.4727 140 7 -16.84 -0.2024 MIMAT0003891 mmu-miR-770-3p 107607 Nod1 ggucgaggugcagUCCGGGUGc :||||||| gugagaggguugaGGGCCCACc 2 10 633 654 [mm9:6:54874277-54874298:-] 0.5115 141 7 -16.99 -0.1378 MIMAT0003735 mmu-miR-672 107607 Nod1 aguguguGUCAUGUGGU-UGGAGu ||| | ||| ||||| ugccuguCAGGAGCCCACACCUCc 2 17 105 128 [mm9:6:54874803-54874826:-] 0.5258 120 0 -14.71 -0.1335 MIMAT0014815 mmu-miR-3099* 107607 Nod1 guucccGACCUUCCUUCGACc || || |||||||| uauccaCUAGACGGAAGCUGa 2 16 273 293 [mm9:6:54874638-54874658:-] 0.5309 159 7 -16.78 -0.3100 MIMAT0003896 mmu-miR-763 107607 Nod1 cggugaccaagaagGGUCGACc ||||||| uaagacucagagagCCAGCUGa 2 9 840 861 [mm9:6:54874070-54874091:-] 0.5218 140 7 -15.65 -0.4573 MIMAT0003739 mmu-miR-673-5p 107607 Nod1 gaGGUUCCU-GGUCU-CGACACUc | :|||| |: | ||||||| cuCAGAGGAUCUCUAUGCUGUGAg 2 21 614 637 [mm9:6:54874294-54874317:-] 0.5201 150 7 -28.21 -0.2639 MIMAT0003898 mmu-miR-760 107607 Nod1 aggggugucuggGUCUCGGc ||||||| ugggaacuugagCAGAGCCg 2 9 375 394 [mm9:6:54874537-54874556:-] 0.5579 140 7 -17.66 -0.3342 MIMAT0003740 mmu-miR-674 107607 Nod1 auguggugaggguAGAGUCACg |||||||| uucgguucuggauUCUCAGUGg 2 10 555 576 [mm9:6:54874355-54874376:-] 0.5268 145 7 -18.51 -0.3051 MIMAT0003452 mmu-miR-678 107607 Nod1 ggaGGUCAGGAACG-UGGCUCUg :|||| | || ||||||| uucUCAGUGGUGGCAACCGAGAg 2 20 567 589 [mm9:6:54874342-54874364:-] 0.5286 158 7 -21.81 -0.1170 MIMAT0003459 mmu-miR-682 107607 Nod1 gucugaaGUGACACUGACGUc | | ||||||||| gaaggcaCCCAGUGACUGCAu 2 15 415 435 [mm9:6:54874496-54874516:-] 0.5452 154 7 -18.05 -0.4298 MIMAT0003461 mmu-miR-683 107607 Nod1 cuCCUGUGUCGAAUGUCGUCc ||| || || ||||||| aaGGA-AC-GC-AACAGCAGa 2 20 293 310 [mm9:6:54874621-54874638:-] 0.5309 145 7 -19.22 -0.4350 MIMAT0003476 mmu-miR-669b 107607 Nod1 uguACGUGUACGUGUGUUUUGa || | || | ||||||| uccUG-AGAUCCCAACAAAACu 2 20 752 772 [mm9:6:54874159-54874179:-] 0.5150 149 7 -9.94 -0.1902 MIMAT0003485 mmu-miR-455* 107607 Nod1 gcuacaucagguUUCCGUGUAu | ||||||| ucaaagcaaagcAUGGCACAUa 2 11 866 887 [mm9:6:54874044-54874065:-] 0.5286 142 7 -13.58 -0.6711 MIMAT0003502 mmu-miR-712 107607 Nod1 ccauggcgggcCCACUUCCUc | ||||||| acuagacggaaGCUGAAGGAa 2 11 278 298 [mm9:6:54874633-54874653:-] 0.5309 142 7 -14.49 -0.1506 MIMAT0004846 mmu-miR-881 107607 Nod1 agauaaguCUUUUCUGUGUCAa || :|||||||| uggaggguGACUGGACACAGUu 2 15 819 840 [mm9:6:54874091-54874112:-] 0.5150 150 7 -16.42 -0.1254 MIMAT0004850 mmu-miR-883b-5p 107607 Nod1 acuGACGAUGGGUAAGAGUCAu | |:| : ||||||||| guuCGGUUCUGGAUUCUCAGUg 2 20 554 575 [mm9:6:54874356-54874377:-] 0.5268 155 7 -17.17 -0.1685 MIMAT0004870 mmu-miR-453 107607 Nod1 acguucGAGUGAUACUCCGUUGGa |||| |: | ||||||| uggauuCUCAGUG-GUGGCAACCg 2 19 563 585 [mm9:6:54874346-54874368:-] 0.5286 156 7 -20.80 -0.1609 MIMAT0005830 mmu-miR-466l 107607 Nod1 uuaUACACACGUA---CAUAAAUau || ||| || |||||| uucAUUUGUUAAUAAAAUAUUUAaa 3 20 959 983 [mm9:6:54873948-54873972:-] 0.5659 126 0 -3.06 -0.1389 MIMAT0005849 mmu-miR-1191 107607 Nod1 aucccgaUGUAUC-AUUCUGAc ||| || ||||||| ugacuggACACAGUUAAGACUc 2 15 826 847 [mm9:6:54874084-54874105:-] 0.5218 153 7 -12.37 -0.3108 MIMAT0005860 mmu-miR-1199 107607 Nod1 ggcGCGCUGGCCCUGAGUCu | | ::: ||||||| ggaCACAGUUAAGACUCAGa 2 18 831 850 [mm9:6:54874081-54874100:-] 0.5218 141 7 -16.79 -0.7006 MIMAT0007866 mmu-miR-1905 107607 Nod1 gaugGCGCACCACCCUGACCAc | | || | |||||||| ccugCUCAUGCUUGGACUGGUa 2 19 148 169 [mm9:6:54874762-54874783:-] 0.5258 158 7 -19.19 -0.1660 MIMAT0007873 mmu-miR-1896 107607 Nod1 gagGAGUGGGUGGU-AGUCUCUc | || ::| | ||||||| ggaCACAGUUAAGACUCAGAGAg 2 20 831 853 [mm9:6:54874078-54874100:-] 0.5218 146 7 -18.40 -0.1365 MIMAT0007874 mmu-miR-1904 107607 Nod1 ggAGGGAG-GUCUCCUCGUCUUg |||||: | : |||||||| ucUCCCUUGCCUGUGAGCAGAAa 2 21 774 796 [mm9:6:54874135-54874157:-] 0.5150 159 7 -27.01 -0.4372 MIMAT0007877 mmu-miR-1894-5p 107607 Nod1 ucUCCGUCCA--CCAU-CCCCUCUc | |:|||| |: ||||||| ugAAGUAGGUCCACUGUGGGGAGAg 2 21 513 537 [mm9:6:54874394-54874418:-] 0.5351 146 7 -26.41 -0.1566 MIMAT0007878 mmu-miR-1894-3p 107607 Nod1 gagggaagUGGGAGAGGGAACg ||:|||||||||| ccaacaaaACUCUCUCCCUUGc 2 15 762 783 [mm9:6:54874148-54874169:-] 0.5150 166 7 -29.56 -0.1891 MIMAT0009392 mmu-miR-1929 107607 Nod1 gaGACGAGAUAUUUCAGGA-UCUu :||| || | :||||| ||| gcUUGC-CUCAAUGGUCCUGAGAu 2 22 738 760 [mm9:6:54874171-54874193:-] 0.5150 123 0 -15.98 -0.1387 MIMAT0009397 mmu-miR-1933-3p 107607 Nod1 uaucAGUGUGACUACCAGGACc |::| : ||||||||| uggcUUGCCUCAAUGGUCCUGa 2 19 736 757 [mm9:6:54874174-54874195:-] 0.5150 154 7 -16.91 -0.4568 MIMAT0009404 mmu-miR-1940 107607 Nod1 uuGACGAG-GUGGAAGAGUCAGGAG-GUa |||: | ::|| :|: ||||| || caCUGUACAGGUCUGUUUCUUCCUCGCAg 2 26 474 502 [mm9:6:54874429-54874457:-] 0.5452 120 0 -18.50 -0.2308 MIMAT0009405 mmu-miR-1941-5p 107607 Nod1 uucGGAGACAUGGUCGUAGAGGGa |:||||||| | ||||||| cauCUUCUGUACAAAGAUCUCCCu 2 22 246 269 [mm9:6:54874662-54874685:-] 0.5309 177 7 -29.87 -0.2559 MIMAT0009422 mmu-miR-1951 107607 Nod1 aucGGUGUGGUCAGAGGUGAUg :| | || | ||||||| aucUCCCUGCA-UAUCCACUAg 2 20 262 282 [mm9:6:54874649-54874669:-] 0.5309 145 7 -14.92 -0.3928 MIMAT0009435 mmu-miR-1962 107607 Nod1 uacacagggucACGGUCGGAGa | |||||||| ggagaauuacuUCCCAGCCUCc 2 12 701 722 [mm9:6:54874209-54874230:-] 0.5150 147 7 -17.03 -0.1077 MIMAT0009444 mmu-miR-1970 107607 Nod1 guUUCGGAU----AGGGGUCAC-UGUGu :|||| | ||| ||||| |||| agGAGCCCACACCUCCACAGUGCACACc 2 22 113 140 [mm9:6:54874791-54874818:-] 0.5258 128 0 -22.95 -0.1410 MIMAT0009457 mmu-miR-1839-3p 107607 Nod1 cgACAACCAUCUAUUCAUCCAGa ||| | |: ||||||||| gcUGUGGCUGCUGAAGUAGGUCc 2 22 502 524 [mm9:6:54874407-54874429:-] 0.5452 161 7 -24.14 -0.1677 MIMAT0011217 mmu-miR-2141 107607 Nod1 uugaaaagacUGUGGAGGa |||||||| ucaggagcccACACCUCCa 2 10 111 129 [mm9:6:54874802-54874820:-] 0.5258 145 7 -14.71 -0.1483 MIMAT0011221 mmu-miR-2145 107607 Nod1 uuGGU-CCGG-GCUGGGACGa ||: |||: |||||||| cgCCGCGGCUGAGACCCUGCa 2 18 177 197 [mm9:6:54874734-54874754:-] 0.5258 151 7 -26.64 -0.1106 MIMAT0015642 mmu-miR-3471 107607 Nod1 uuaCGGAAUGUCAACCUAGAGu |:|| ||| ||||||| ucaGUCU--CAG-AGGAUCUCu 2 20 609 627 [mm9:6:54874304-54874322:-] 0.5201 146 7 -17.67 -0.2773 MIMAT0015645 mmu-miR-3473 107607 Nod1 ccgacucgguAGAGAGGu ||||||| ccaacaaaacUCUCUCCc 2 9 762 779 [mm9:6:54874152-54874169:-] 0.5150 140 7 -11.31 -0.2727 MIMAT0000146 mmu-miR-134 107607 Nod1 ggggaGACCAGUUGGUCAGUGu :|| || :||||||| cuaggUUGCUC-CUCAGUCACa 2 18 28 48 [mm9:6:54874883-54874903:-] 0.4614 147 7 -19.91 -0.4163 MIMAT0000159 mmu-miR-149 107607 Nod1 cccUCACUUCUGUG-C-CUCGGUCu ||| ||||| | | ||||||| cacAGUUAAGACUCAGAGAGCCAGc 2 21 834 858 [mm9:6:54874073-54874097:-] 0.5218 166 7 -22.79 -0.3511 MIMAT0000214 mmu-miR-185 107607 Nod1 aguccuugacggaaAGAGAGGu ||||||| gaucccaacaaaacUCUCUCCc 2 9 758 779 [mm9:6:54874152-54874173:-] 0.5150 140 7 -12.84 -0.2703 MIMAT0000223 mmu-miR-193 107607 Nod1 ugacccugaaacaucCGGUCAa |||||| auaacguguucuuuuGCCAGUu 2 8 939 960 [mm9:6:54873971-54873992:-] 0.6255 120 6 -12.85 -0.1104 MIMAT0000517 mmu-miR-192 107607 Nod1 ccGACAGUUAAG---UAUCCAGUc | | |:|| | ||||||| guCAGACGAUACCCUCUAGGUCAg 2 20 589 612 [mm9:6:54874319-54874342:-] 0.5286 142 7 -16.71 -0.1276 MIMAT0000666 mmu-miR-320 107607 Nod1 agcgggaGAGUUGGGUC-GAAAa |||| | ||| |||| gggagagCUCAUCACAGACUUUg 2 16 531 553 [mm9:6:54874378-54874400:-] 0.5351 123 0 -11.67 -0.1502 MIMAT0000741 mmu-miR-377 107607 Nod1 ugUUUUCAACGGAAAC-ACACUa |:|:| | :|| || ||||| ucAGAGGAUCUCUAUGCUGUGAg 2 21 615 637 [mm9:6:54874294-54874316:-] 0.5201 128 0 -14.99 -0.2185 MIMAT0000748 mmu-miR-383 107607 Nod1 ucgGUGUCAGUGGAAGACU-AGa ||::||:| |||||| || cugCAUGGUUA--UUCUGAGUCc 2 20 430 450 [mm9:6:54874481-54874501:-] 0.5452 124 0 -13.71 -0.4724 MIMAT0000904 mmu-miR-215 107607 Nod1 cagacaguuuAGUAUCCAGUa || ||||||| gacgauacccUC-UAGGUCAg 2 12 593 612 [mm9:6:54874319-54874338:-] 0.5286 141 7 -11.08 -0.1182 MIMAT0001095 mmu-miR-370 107607 Nod1 ugguccaAGGUGGGGUCGUCCg || | |||||||| ucaccacUCAAAGCCAGCAGGg 2 16 224 245 [mm9:6:54874686-54874707:-] 0.5283 151 7 -22.72 -0.1579 MIMAT0001095 mmu-miR-370 107607 Nod1 ugGUCCAAGGUGGGGUCGUCCg || | || :||||||| agCACUGUGCA-GUCAGCAGGg 2 21 52 72 [mm9:6:54874859-54874879:-] 0.4502 142 7 -16.96 -0.1025 MIMAT0003128 mmu-miR-485 107607 Nod1 cuuaagUAGUG-CCGGUCGGAGa ||:|| |||||||| gggagaAUUACUUCCCAGCCUCc 2 17 700 722 [mm9:6:54874209-54874231:-] 0.5150 151 7 -22.09 -0.1056 MIMAT0003130 mmu-miR-486 107607 Nod1 gagccccgucGAGU--CAUGUCCu |||| ||||||| cuuagucccuCUCACUGUACAGGu 2 13 462 485 [mm9:6:54874446-54874469:-] 0.5452 147 7 -15.95 -0.3779 MIMAT0003168 mmu-miR-543 107607 Nod1 uuCUUCAC-GUGGCGCUUACAAa || | | || : ||||||| ggGAUGGGACAGUUGGAAUGUUg 2 21 913 935 [mm9:6:54873996-54874018:-] 0.4537 147 7 -11.62 -0.1195 MIMAT0003453 mmu-miR-497 107607 Nod1 auguuuGGUGUC-ACA-CGACGAc :|:||| ||| |||||| ucuuccUCGCAGCUGUGGCUGCUg 2 17 491 514 [mm9:6:54874417-54874440:-] 0.5452 127 6 -24.47 -0.1507 MIMAT0003456 mmu-miR-495 107607 Nod1 uucuucacgugguacAAACAAa |||||| ucuuuugccaguucaUUUGUUa 2 8 948 969 [mm9:6:54873962-54873983:-] 0.6255 120 6 -6.14 -0.1857 MIMAT0004847 mmu-miR-882 107607 Nod1 ugauuacgcgaUUGAGAGAGGa |||||||||| gaucccaacaaAACUCUCUCCc 2 12 758 779 [mm9:6:54874152-54874173:-] 0.5150 155 7 -17.63 -0.2775 MIMAT0004853 mmu-miR-874 107607 Nod1 agccagggagcccgGUCCCGUc ||||||| ccacucaaagccagCAGGGCAu 2 9 227 248 [mm9:6:54874683-54874704:-] 0.5283 140 7 -17.49 -0.1913 MIMAT0004859 mmu-miR-193b 107607 Nod1 ucgcccugaaacaccCGGUCAa |||||| auaacguguucuuuuGCCAGUu 2 8 939 960 [mm9:6:54873971-54873992:-] 0.6255 120 6 -15.44 -0.1104 MIMAT0004896 mmu-miR-590-3p 107607 Nod1 ugaucGAAUAUGUAUUUUAau :||:| ||||||| guucaUUUGUUAAUAAAAUau 3 17 958 978 [mm9:6:54873953-54873973:-] 0.5659 136 0 -5.11 -0.3504 MIMAT0005850 mmu-miR-1192 107607 Nod1 uuAAACCAGACAAACAAACAAa ||| | | ||| |||||| ucUUUUGCCAGUUCAUUUGUUa 2 21 948 969 [mm9:6:54873962-54873983:-] 0.6255 136 6 -4.76 -0.1874

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G040192 Nod1 Mus musculus 107607

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Nod1 mmu-miR-881 beg:824 end:841 pic:3' AGATAAGTCTTTTCTGTGTCAA 5'& || .||||||||| &5' --------GACTGGACACAGTT 3' Nod1 mmu-miR-683 beg:291 end:310 pic:3' CTCC-TGTGTCGAATGTCGTCC 5'& ||| ||.|| ||||||| &5' -AGGAACGCA----ACAGCAG- 3' Nod1 mmu-miR-683 beg:712 end:730 pic:3' CTCCTGTGTCGAA--TGTCGTCC 5'& |||| ||||||| &5' -------CAGCCTCCACAGCAG- 3' Nod1 mmu-miR-678 beg:572 end:589 pic:3' GGAGGTCAGGAACG-TGGCTCTG 5'& .|| || ||||||| &5' -----GGTG---GCAACCGAGA- 3' Nod1 mmu-miR-499 beg:197 end:215 pic:3' TTTGTAGTGACGTTCAGAATT 5'& |.| | .|||||||. &5' ------CGCAGGGAGTCTTAG 3' Nod1 mmu-miR-1941-5p beg:250 end:270 pic:3' TTCGGAGACATGG-TCGTAGAGGGA 5'& ||||||| || |||||||| &5' -----TCTGTACAAAG-ATCTCCCT 3' Nod1 mmu-miR-767 beg:890 end:909 pic:3' ACGAGTCTGTTGGTACCACGT 5'& || |||||||||| &5' ----CACCATACCATGGTGC- 3' Nod1 mmu-miR-2132 beg:163 end:178 pic:3' GTAGCGCAGTTGTGGGCGG 5'& | .|.||||||| &5' ------GGTAGCACCCGC- 3' Nod1 mmu-miR-2141 beg:118 end:129 pic:3' TTGAAAAGACTGTGGAGGA 5'& |||||||| &5' ----------ACACCTCC- 3' Nod1 mmu-miR-128 beg:45 end:61 pic:3' TTTCTCTGGCCAAGTGACACT 5'& |||| ||||||| &5' ----AGACAG---CACTGTG- 3' Nod1 mmu-miR-760 beg:384 end:395 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& |||||||| &5' ------------CAGAGCCG 3' Nod1 mmu-miR-1186 beg:40 end:58 pic:3' GTACGGAAATTAAGGTCGTGAG 5'& |.| ||||||| &5' ---GTCACAGA---CAGCACT- 3' Nod1 mmu-miR-1962 beg:707 end:722 pic:3' TACACAGGGTCACGGTCGGAGA 5'& |. |||||||| &5' -------CTTC--CCAGCCTC- 3' Nod1 mmu-miR-1893 beg:163 end:181 pic:3' GCTCCGCAGGTCGCGGGCGCGG 5'& ||. ||| |||||||| &5' ---GGT----AGCACCCGCGCC 3' Nod1 mmu-miR-674 beg:557 end:576 pic:3' ATGTGGTGAGGGT--AGAGTCACG 5'& .||. . |||||||| &5' -------TTCTGGATTCTCAGTG- 3' Nod1 mmu-miR-665 beg:0 end:14 pic:3' TCCCTGGAGTCGGAGGACCA 5'& |||| | ||||||| &5' --GGAC----G-CTCCTGG- 3' Nod1 mmu-miR-666-3p beg:84 end:101 pic:3' TCGTCCGCTAGTGCGACGTCGG 5'& |||| |.| ||||||| &5' -GCAG-----CGC-CTGCAGC- 3' Nod1 mmu-miR-3099star beg:276 end:293 pic:3' GTTCCCGACCTTCCTTCGACC 5'& || || |||||||| &5' ------CTAGACGGAAGCTG- 3' Nod1 mmu-miR-133a beg:333 end:352 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& .||| |||||||| &5' -GGCTCCGT----GGGACCAA- 3' Nod1 mmu-miR-133b beg:333 end:352 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& .||| |||||||| &5' -GGCTCCGT----GGGACCAA- 3' Nod1 mmu-miR-3471 beg:609 end:627 pic:3' TTACGGAATGTCAACCTAGAGT 5'& |.|| ||| ||||||| &5' ---GTCT--CAGA-GGATCTC- 3' Nod1 mmu-miR-453 beg:566 end:585 pic:3' ACGTTCGAGTGATACTCCGTTGGA 5'& |||| |. ||||||| &5' ------CTCAGTGGT-GGCAACC- 3' Nod1 mmu-miR-455star beg:874 end:888 pic:3' GCTACATCAGGTTTCCGTGTAT 5'& || |||||||| &5' ----------CAT-GGCACATA 3' Nod1 mmu-miR-1933-3p beg:739 end:757 pic:3' TATCAGTGTGAC-TACCAGGACC 5'& | | || ||||||||| &5' ----TTGC-CTCAATGGTCCTG- 3' Nod1 mmu-miR-486 beg:469 end:485 pic:3' GAGCCCCGTCGAGT--CATGTCCT 5'& |||| ||||||| &5' ----------CTCACTGTACAGG- 3' Nod1 mmu-miR-1839-3p beg:505 end:524 pic:3' CGACAACCATCTATTCATCCAGA 5'& |||| || ||||||||| &5' GCTGCTG------AAGTAGGTC- 3' Nod1 mcmv-miR-m01-4 beg:898 end:917 pic:3' GTGCGCGTGCACAATCGTATCCT 5'& ||.| || ||||.||| &5' ------CATG-GTGCGCATGGGA 3' Nod1 mcmv-miR-m108-1 beg:348 end:370 pic:3' GCTGTGCT-CGGTGGCAGTCTTT 5'& |||. |.|||| ||||||| &5' ----ACGGTGTCACCTTCAGAAA 3' Nod1 mcmv-miR-m108-2-3p beg:572 end:593 pic:3' TGGCCAGTGAGCAGAGCTCAGTG 5'& .||| .| | |||||| &5' --TGGTGGCAAC-CGAGAGTCA- 3' Nod1 mcmv-miR-m108-2-5p.1 beg:416 end:434 pic:3' GCCACGAGCGCAGCTCACTGGCG 5'& || | ||||||.|| &5' --------GCACCCAGTGACTGC 3' Nod1 mcmv-miR-m108-2-5p.1 beg:814 end:832 pic:3' GCCACGAGCGCAGCTCACTGGCG 5'& |.| | |.|||||.| &5' ----GTTGGA---GGGTGACTG- 3' Nod1 mcmv-miR-m21-1 beg:129 end:152 pic:3' GC-CGAACTTGC-ACAGGGGATA 5'& | || || ||||||||. &5' -GTGCACAC-CGATGTCCCCTG- 3' Nod1 mcmv-miR-m22-1 beg:394 end:414 pic:3' ACCGGAGCCATGCCT--GCCCCTT 5'& .|||| .|||||| &5' ------TGGTAACTTCTTGGGGAA 3' Nod1 mmu-let-7e beg:730 end:748 pic:3' TTGATATGTTGGAGGATGGAGT 5'& .|| |.|.||||| &5' ------GCATGG-CTTGCCTCA 3' Nod1 mmu-let-7f beg:730 end:748 pic:3' TTGATATGTTAGATG-ATGGAGT 5'& .|| .| |.||||| &5' ------GCATG--GCTTGCCTCA 3' Nod1 mmu-let-7g beg:730 end:748 pic:3' TTGACATGTTTGATG-ATGGAGT 5'& .|| .| |.||||| &5' ------GCATG--GCTTGCCTCA 3' Nod1 mmu-let-7gstar beg:473 end:484 pic:3' CGTTCCGTCACCGGACATGTCA 5'& |||||||| &5' -------------CTGTACAG- 3' Nod1 mmu-let-7i beg:729 end:748 pic:3' TTGTCGTGTTTGATGATGGAGT 5'& .||| . || |.||||| &5' ---GGCATGG-CT--TGCCTCA 3' Nod1 mmu-miR-107 beg:615 end:635 pic:3' ACTATC-GGGACATGTTACGACGA 5'& || |.|| ||||||. &5' -GAGGATCTCT-----ATGCTGT- 3' Nod1 mmu-miR-107 beg:69 end:87 pic:3' ACTATCGGGACATGTTACGACGA 5'& |.|||| | .||||||. &5' -GGTAGC-----AGGATGCTGT- 3' Nod1 mmu-miR-10a beg:60 end:75 pic:3' GTGTTTAAGCCTAGATGTCCCAT 5'& .|| .||||||| &5' -----------GTCAGCAGGGTA 3' Nod1 mmu-miR-10b beg:61 end:75 pic:3' GTGTTTAAGCCAAGATGTCCCAT 5'& || .||||||| &5' ------------TCAGCAGGGTA 3' Nod1 mmu-miR-1186b beg:746 end:765 pic:3' CACCACGTACGGAAATTAGGGT 5'& |||| ||| .|||||| &5' -TGGT-----CCTGAGATCCCA 3' Nod1 mmu-miR-1188 beg:5 end:29 pic:3' AGGACCGGG-TTGGAGTGTGGT 5'& |||||| | .|.||. || &5' TCCTGGGCAGGATCTTTGTCC- 3' Nod1 mmu-miR-1190 beg:173 end:189 pic:3' CTGTCTCCCCTTGGAGTCGACT 5'& | .|| |.||||| &5' ---------GCGCCGCGGCTGA 3' Nod1 mmu-miR-1191 beg:828 end:847 pic:3' ATCCCGATGTATCATTCTGAC 5'& || ||| ||||||| &5' ---GGACACAGT-TAAGACT- 3' Nod1 mmu-miR-1195 beg:723 end:748 pic:3' AC-TCGTCCG-ACCGGAGCTTGAGT 5'& | ||||||| ||||.| |||| &5' -GCAGCAGGCATGGCTTGC--CTCA 3' Nod1 mmu-miR-1197 beg:14 end:31 pic:3' TCTTCATCTGGTACACAGGAT 5'& .||.| ||||||| &5' ------GGATCTT-TGTCCTA 3' Nod1 mmu-miR-128 beg:511 end:531 pic:3' TTTCTCTGGCCAAGTGACACT 5'& || . ||| |||||||. &5' ---GAAGTAGGTCCACTGTGG 3' Nod1 mmu-miR-128 beg:615 end:637 pic:3' TTTCTCTGGCCAAGTGACACT 5'& |.|| ||.| .|||||| &5' AGAG-GATCTCTATGCTGTGA 3' Nod1 mmu-miR-1306 beg:219 end:242 pic:3' GTAGTGGTG-GTCTCGGTTGCA 5'& |.||||||| || |||||.| &5' CGTCACCACTCAAAGCCAGC-- 3' Nod1 mmu-miR-134 beg:452 end:477 pic:3' GGGGAGACCAGTT--GGTCAGTGT 5'& .|||||| |.|. || |||| &5' -TCCTCTGCTTAGTCCCTCTCAC- 3' Nod1 mmu-miR-139-5p beg:511 end:533 pic:3' GACCTCTGTGCACGTGACATCT 5'& ||| || .| || ||||||.|. &5' CTGAAG-TAGGTCCACTGTGGG 3' Nod1 mmu-miR-140 beg:691 end:712 pic:3' GATGGTA-TCCCATTTTGGTGAC 5'& ||| |||| |.||..||| &5' ---CCAGGAGGG-AGAATTACT- 3' Nod1 mmu-miR-141star beg:805 end:828 pic:3' AGGTTGTGACGTGACCTTCTAC 5'& ||| || ..||||.|.|| &5' TCCT-CAGAA-GTTGGAGGGTG 3' Nod1 mmu-miR-144 beg:614 end:636 pic:3' TCATGTAGTAGATATGACAT 5'& || . ||| |||||.||||. &5' AGAGGATC-TCTATGCTGTG 3' Nod1 mmu-miR-145star beg:691 end:700 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& ||||||. &5' --------------CCAGGAG- 3' Nod1 mmu-miR-149 beg:573 end:595 pic:3' CCCTCACTTCTGTGC-CTCGGTCT 5'& .|||. || || |||.|||| &5' ---GGTGGCAAC-CGAGAGTCAGA 3' Nod1 mmu-miR-149 beg:838 end:857 pic:3' CCCTCACTTCTGTG-C-CTCGGTCT 5'& ||||| | ||||||| &5' -------AAGACTCAGAGAGCCAG- 3' Nod1 mmu-miR-186 beg:644 end:666 pic:3' TCGGGTTTTCCTCTTAAGAAAC 5'& .||||| ||||||.||| &5' GGCCCACCC--AGAATTTTTT- 3' Nod1 mmu-miR-1894-3p beg:759 end:784 pic:3' GAGGGAAG---TGGGAGAGGGAACG 5'& |||| ||.||||||||||| &5' -TCCCAACAAAACTCTCTCCCTTGC 3' Nod1 mmu-miR-1894-5p beg:516 end:538 pic:3' TCTCCGTCCACCAT---CCCCTCTC 5'& |.|||| |||||||| &5' ----GTAGGTCCACTGTGGGGAGAG 3' Nod1 mmu-miR-1894-5p beg:692 end:706 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& |||| |||||| &5' -----CAGGA-----GGGAGA- 3' Nod1 mmu-miR-1896 beg:833 end:854 pic:3' GAGGAGTGGGTG--GTAGTCTCTC 5'& || ..| | |||||||| &5' -----CAGTTAAGAC-TCAGAGAG 3' Nod1 mmu-miR-1904 beg:773 end:796 pic:3' GGAGGGAGGTCTC-CTCGTCTTG 5'& ||||||. | |||||||| &5' -CTCCCTTGCCTGTGAGCAGAA- 3' Nod1 mmu-miR-192 beg:592 end:613 pic:3' CCGACAGTTA----AGTATCCAGTC 5'& |.|| || |||||||| &5' ------CGATACCCTC-TAGGTCAG 3' Nod1 mmu-miR-1928 beg:368 end:388 pic:3' CTCGACCGTTACA-TCGA 5'& ||||||| || ||| &5' GAGCTGGGAACTTGAGC- 3' Nod1 mmu-miR-1933-3p beg:545 end:566 pic:3' TATCAGTGTGACTA--CCAGGACC 5'& || .||.| |||.|||| &5' ------ACTTTGGTTCGGTTCTGG 3' Nod1 mmu-miR-1935 beg:442 end:465 pic:3' TCTCTAGGCGGTCGGAGACGGA 5'& ||| ||| || |||||||.| &5' -GAG-TCCTCCTTCCTCTGCTT 3' Nod1 mmu-miR-193b beg:604 end:614 pic:3' TCGCCCTGAAACACCCGGTCAA 5'& ||.|||| &5' --------------GGTCAGT- 3' Nod1 mmu-miR-193star beg:835 end:849 pic:3' AGTAGAACGGGCGTTTCTGGGT 5'& |. |||||.|| &5' -----------GTTAAGACTCA 3' Nod1 mmu-miR-1940 beg:707 end:724 pic:3' TTGACGAGGTGGAAGAGTCAGGAGGTA 5'& |||| ||| |||||| &5' -----------CTTCCCAG-CCTCCA- 3' Nod1 mmu-miR-1948 beg:442 end:467 pic:3' GACATGCTCAC-------GAGACGGATTT 5'& |||| ||||||.||. &5' ------GAGTCCTCCTTCCTCTGCTTAG- 3' Nod1 mmu-miR-1956 beg:0 end:16 pic:3' AGGCGACTGAGTCG-GGACCTGA 5'& ||| || |||||.| &5' ------GAC---GCTCCTGGGC- 3' Nod1 mmu-miR-1960 beg:36 end:59 pic:3' TCGGGAGA-AGA--TTGTCGTGACC 5'& .|||| || .||||||||| &5' --TCCTCAGTCACAGACAGCACTG- 3' Nod1 mmu-miR-1961 beg:733 end:748 pic:3' AAGATTGATGATGGAGT 5'& |..|| |.||||| &5' ---TGGCT--TGCCTCA 3' Nod1 mmu-miR-1963 beg:9 end:31 pic:3' CTTCCGGAGTACTAG-AGCAGGGT 5'& .||| |||| |.||||.| &5' --GGGCAG---GATCTTTGTCCTA 3' Nod1 mmu-miR-1968 beg:483 end:507 pic:3' TCAGGTGGT--AGGAATTGTCGACGT 5'& ||| .. |||| .||||||. &5' -GTCTGTTTCTTCCTC-GCAGCTGT- 3' Nod1 mmu-miR-1982star beg:685 end:717 pic:3' GGA-GGGGTCCTG---------GGAGGGTT 5'& ||| |||||||| |.|||||. &5' CCTGCCCCAGGAGGGAGAATTACTTCCCAG 3' Nod1 mmu-miR-1982star beg:453 end:476 pic:3' GGAGGGGTC-CTGGGAGGGTT 5'& ||||. | | |||||.|| &5' CCTCTGCTTAGTCCCTCTCA- 3' Nod1 mmu-miR-2134 beg:682 end:700 pic:3' CGTGGGGCAAAGGGTTCTG 5'& | ||. ||||.|| &5' GTGCCTGC---CCCAGGA- 3' Nod1 mmu-miR-2135 beg:606 end:628 pic:3' CAAAGCCGGGGT--TCTGGAGA 5'& || |.|.|| .||.|||| &5' ---TCAGTCTCAGAGGATCTCT 3' Nod1 mmu-miR-2135 beg:247 end:267 pic:3' CAAAGCCGGGGTTCTGGAGA 5'& ||| |. ||||.||| &5' --TTCTGTACAAAGATCTC- 3' Nod1 mmu-miR-2145 beg:176 end:197 pic:3' TTGGT-CCGGG-CTGGGACGA 5'& .||. |||. |||||||| &5' -GCCGCGGCTGAGACCCTGC- 3' Nod1 mmu-miR-214star beg:719 end:736 pic:3' CGTGTCGTTCACATCTGTCCGT 5'& ||||||| .|||||| &5' -CACAGCA-------GCAGGCA 3' Nod1 mmu-miR-215 beg:600 end:612 pic:3' CAGACAGTTTAGTATCCAGTA 5'& || ||||||| &5' ----------TC-TAGGTCA- 3' Nod1 mmu-miR-218-2star beg:202 end:222 pic:3' GCGCCAC-GAACTGTCTTGGTAC 5'& || | ||| .||||||| &5' ---GGAGTCTTA--GGAACCAT- 3' Nod1 mmu-miR-24 beg:500 end:526 pic:3' GACAAGGACGACTTGACTC-GGT 5'& |||| |||||||| | | ||| &5' CTGTGGCTGCTGAAGTAGGTCCA 3' Nod1 mmu-miR-24 beg:428 end:450 pic:3' GACAAGGACG-ACTT----GACTCGGT 5'& |||| ||. |||||.| &5' ------CTGCATGGTTATTCTGAGTC- 3' Nod1 mmu-miR-27a beg:617 end:638 pic:3' CGCCTTGAATCGGTGACACTT 5'& ||| || ..||||||. &5' --GGATCTCTA-TGCTGTGAG 3' Nod1 mmu-miR-27a beg:517 end:533 pic:3' CGCCTTGAATC-GGTGACACTT 5'& .| ||||||||.. &5' ---------GGTCCACTGTGGG 3' Nod1 mmu-miR-2861 beg:683 end:699 pic:3' GGCGGGCGGCGGTCCGGGG 5'& .|||.||| ||||| &5' -TGCCTGCC-CCAGG---- 3' Nod1 mmu-miR-298 beg:442 end:464 pic:3' CCCTTCTTGTCGGGAGGAGACGG 5'& .|| | ||.||||||||. &5' ---GAGTCCT-CCTTCCTCTGCT 3' Nod1 mmu-miR-29bstar beg:221 end:242 pic:3' ATTTGGTGGTATACTTTGGTCG 5'& .||||| ||.||||| &5' ----TCACCACTCAAAGCCAGC 3' Nod1 mmu-miR-30bstar beg:748 end:765 pic:3' CTGCATTTGTAGG--TGTAGGGTC 5'& .||| | |||||| &5' ---------GTCCTGAGATCCCA- 3' Nod1 mmu-miR-31star beg:723 end:740 pic:3' CTACCGTTATACAACCGTATCGT 5'& |||. |||||.|| &5' ----GCAGCA----GGCATGGC- 3' Nod1 mmu-miR-31star beg:868 end:884 pic:3' CTACCGTTATACAACCGTATCGT 5'& |||| ||||.||| &5' ----GCAAA------GCATGGCA 3' Nod1 mmu-miR-326 beg:603 end:622 pic:3' TGACCTCCTTCCCGGGTCTCC 5'& ||| | |.|||||| &5' -----AGGTCAGTCTCAGAGG 3' Nod1 mmu-miR-327 beg:796 end:815 pic:3' TAGGAGTACGGGGAGTTCA 5'& |||.||||| .|||||. &5' ATCTTCATG-TCCTCAG-- 3' Nod1 mmu-miR-330 beg:601 end:622 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& .|||.| ||| |.|||||. &5' -TCTAGGT--CAGTCTCAGAGG 3' Nod1 mmu-miR-337-3p beg:360 end:377 pic:3' TCCGTAGTATATCCTCGACTT 5'& ||| ||||||. &5' -----TCAGAAAAGAGCTGG- 3' Nod1 mmu-miR-337-3p beg:800 end:823 pic:3' TCCGTAGTATA----TCCTCGACTT 5'& ||||.| || ||.||.| &5' -----TCATGTCCTCAGAAGTTGGA 3' Nod1 mmu-miR-339-5p beg:186 end:208 pic:3' GCACTCGAGGACCTCC-TGTCCCT 5'& ||| |||| || .|||||| &5' ---GAGACCCTGCAGACGCAGGGA 3' Nod1 mmu-miR-342-5p beg:36 end:60 pic:3' GAGTTAGTGTCTATCGTGGGGA 5'& ||||.||||||| |||||. . &5' CTCAGTCACAGACAGCACTGT- 3' Nod1 mmu-miR-343 beg:686 end:706 pic:3' AGACCCGTGTACTTCCCTCT 5'& ||| | || |.||||||| &5' -CTGCCC-CA-GGAGGGAGA 3' Nod1 mmu-miR-3470a beg:89 end:107 pic:3' GGTCGGACCAGATGTTTCACT 5'& ||||| .|||.||| &5' ---GCCTGCA--GCAAGGTG- 3' Nod1 mmu-miR-370 beg:224 end:245 pic:3' TGGTCCAAGGTGG-----GGTCGTCCG 5'& ||||. |||||||| &5' --------CCACTCAAAGCCAGCAGG- 3' Nod1 mmu-miR-370 beg:711 end:735 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& |||| ||||| |||||||| &5' -CCAGCCTCCACAGCAGCAGGC 3' Nod1 mmu-miR-378star beg:96 end:118 pic:3' TGTGTCC-TGGACCTCAGTCCTC 5'& .|| ||| .||| |||||||| &5' GCA-AGGTGCCT---GTCAGGAG 3' Nod1 mmu-miR-449b beg:40 end:60 pic:3' CGGTCGATTGTTGTGACGGA 5'& |.|| | .|||.|||||. &5' GTCA-CAGACAGCACTGT-- 3' Nod1 mmu-miR-450a-3p beg:29 end:45 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& |. || |||.||.| &5' ------GTT--GC-TCCTCAGT 3' Nod1 mmu-miR-450b-3p beg:698 end:717 pic:3' TACGTACGTTTTAC--AAGGGTTA 5'& | |.||| ||||||. &5' ------GGAGAATTACTTCCCAG- 3' Nod1 mmu-miR-455 beg:152 end:167 pic:3' CACATATACGGGCACCTGACG 5'& ||||. ||||||| &5' ------ATGCT--TGGACTG- 3' Nod1 mmu-miR-485 beg:698 end:722 pic:3' CTTAAGTAGTGCC-GGTCGGAGA 5'& |.| ||.|| |||||||| &5' GGAGA-ATTACTTCCCAGCCTC- 3' Nod1 mmu-miR-493 beg:348 end:366 pic:3' GGACCGTGTGTCATCCTGGAAGT 5'& ||.||. ||||||| &5' --------ACGGTGTCACCTTCA 3' Nod1 mmu-miR-493 beg:784 end:806 pic:3' GGAC-CGTGTGTCATCCTGGAAGT 5'& || ||| | ||| |.||||| &5' --TGAGCAGAAAGT---ATCTTCA 3' Nod1 mmu-miR-511 beg:404 end:422 pic:3' ACTCACGTCTCGTTTTCCGTA 5'& || .|| |.|||||| &5' ----TGGGGAA-AGAAGGCA- 3' Nod1 mmu-miR-539 beg:476 end:496 pic:3' TGTGTGGTTCCTATTAAAGAGG 5'& .|| ||| .|||||.| &5' ---TAC--AGGTCTGTTTCTTC 3' Nod1 mmu-miR-541 beg:453 end:472 pic:3' TCACACTGGTTGTAGTCTTAGGGAA 5'& || | |.||||| &5' -------CCTCTG-CTTAGTCCCT- 3' Nod1 mmu-miR-544 beg:779 end:796 pic:3' CTCGAACGATTTTTACGTCTTA 5'& |||| .| |||||| &5' ----TTGCCTGTGA-GCAGAA- 3' Nod1 mmu-miR-592 beg:829 end:840 pic:3' TGTAGTAGCGTATAACTGTGTTA 5'& ||||||.| &5' ---------------GACACAGT 3' Nod1 mmu-miR-666-5p beg:673 end:693 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& |.|.|.|| ||||||.|| &5' -GTTTTTAC---TGTGCCTGC- 3' Nod1 mmu-miR-666-5p beg:768 end:788 pic:3' CCGAGAGTGTCGACACGGGCGA 5'& ||||| | || ||||.|. &5' --CTCTCTCC-CT-TGCCTGT- 3' Nod1 mmu-miR-666-5p beg:93 end:112 pic:3' CCGAGAGTGTCGA--CACGGGCGA 5'& .|||| |||||.|. &5' -------GCAGCAAGGTGCCTGT- 3' Nod1 mmu-miR-667 beg:340 end:360 pic:3' GAACCCGACCCACCGT-CCACAGT 5'& |||| ||||||| &5' -------TGGGACCAACGGTGTCA 3' Nod1 mmu-miR-669g beg:114 end:137 pic:3' TAGTACAGTTGTGTA--TGTTACGT 5'& | | |||| |||.|||| &5' -----GCCCACACCTCCACAGTGCA 3' Nod1 mmu-miR-672 beg:705 end:722 pic:3' AGTGTGTGTCATGT--GGTTGGAGT 5'& ||| |||.|||| &5' ----------TACTTCCCAGCCTC- 3' Nod1 mmu-miR-673-5p beg:615 end:638 pic:3' GAGGTTCCTGGTCT--CGACACTC 5'& .||||.| |||||||| &5' ----GAGGATCTCTATGCTGTGAG 3' Nod1 mmu-miR-675-5p beg:160 end:181 pic:3' TGACACCCGGGAAAGGCGTGGT 5'& |||| || ||||.|| &5' ACTGGTAGCAC---CCGCGCC- 3' Nod1 mmu-miR-679 beg:819 end:841 pic:3' TGGTTCTCAGTGGA--GTGTCAGG 5'& .||.|| ||. ||||||. &5' ---GAGGGTGACTGGACACAGTT- 3' Nod1 mmu-miR-679 beg:344 end:367 pic:3' TGGTT-CT-CAGTGGAGTGTCAGG 5'& ||||| |. |||||||. ||| &5' ACCAACGGTGTCACCTT-CAG--- 3' Nod1 mmu-miR-681 beg:498 end:523 pic:3' TCGACG--GACGG--TCGCTCCGAC 5'& |||||. ||||. ||. |||. &5' AGCTGTGGCTGCTGAAGT-AGGT-- 3' Nod1 mmu-miR-682 beg:414 end:435 pic:3' GTCTGAAGTGA--CACTGACGTC 5'& || ||| ||||||||| &5' --GAAGGCACCCAGTGACTGCA- 3' Nod1 mmu-miR-682 beg:671 end:693 pic:3' GTCTGAAGTGACACTGACGTC 5'& ||| .||.|||||| |||| &5' CAGTTTTTACTGTGCCTGC-- 3' Nod1 mmu-miR-684 beg:694 end:709 pic:3' AACTGAACTTCCCTTTTGA 5'& |.|||||.||.| &5' -------GGAGGGAGAATT 3' Nod1 mmu-miR-684 beg:522 end:540 pic:3' AACTGAACTTCCCTTTTGA 5'& ||| .||||.|.|| &5' ---ACTGT-GGGGAGAGCT 3' Nod1 mmu-miR-688 beg:777 end:790 pic:3' CTTATTCATCAGCGGACGCT 5'& |.|||||.|| &5' ----------TTGCCTGTGA 3' Nod1 mmu-miR-693-3p beg:274 end:293 pic:3' AATGTCGGTGTAGA-CTTTCGACG 5'& |||| |.|||||| &5' ------CCACTAGACGGAAGCTG- 3' Nod1 mmu-miR-693-5p beg:494 end:512 pic:3' CTTTTGAAAGCCT--ACACCGAC 5'& ||| |||||||| &5' --------TCGCAGCTGTGGCTG 3' Nod1 mmu-miR-696 beg:718 end:735 pic:3' GGGTGTCGTTCGTGTGCG 5'& ||||||| |||| .| &5' -CCACAGC-AGCAGGC-- 3' Nod1 mmu-miR-705 beg:878 end:899 pic:3' ACGGGTG-GGGTGGAGGGTGG 5'& || ||. |||||| |||. &5' -GCACATACCCACCA-CCAT- 3' Nod1 mmu-miR-707 beg:723 end:741 pic:3' GCATCCGTTCG-CCGTACTGAC 5'& || ||| ||||||.|| &5' -----GC-AGCAGGCATGGCT- 3' Nod1 mmu-miR-715 beg:893 end:916 pic:3' GTGCGCCCCCACACGTGCCTC 5'& || | |||| |||.||. &5' CATACCATGGTGCGCATGGG- 3' Nod1 mmu-miR-720 beg:326 end:348 pic:3' ACC----TCCGGGGTCGCTCTA 5'& || ||||.|| |.|.|| &5' -GGCTGAAGGCTCC-GTGGGA- 3' Nod1 mmu-miR-744 beg:257 end:273 pic:3' ACGACAATCGGGATCGGGGCGT 5'& || || |||.||| &5' -------AGATCT--CCCTGCA 3' Nod1 mmu-miR-758 beg:28 end:49 pic:3' ATC-ACCTGGTC-CAGTGTTT 5'& .| || || ||||||.| &5' -GGTTGCTCCTCAGTCACAGA 3' Nod1 mmu-miR-760 beg:536 end:559 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& || |||||||. | .|| &5' TCATCACAGACTTTGGTTCG 3' Nod1 mmu-miR-770-3p beg:633 end:654 pic:3' GGTCGAGGTGCAG--TCCGGGTGC 5'& || . ||. .||||||| &5' --AGA---GGGTTGAGGGCCCAC- 3' Nod1 mmu-miR-804 beg:691 end:715 pic:3' AGGTCCACTC-CTTGTTGAGTGT 5'& ||||| |.| |||. ||| | &5' -CCAGGAGGGAGAATTACTTCC- 3' Nod1 mmu-miR-804 beg:519 end:543 pic:3' AGGTC-CACTCCTTGTTGAGTGT 5'& |||| |||.|||. |.||||. &5' TCCACTGTGGGGAG-AGCTCAT- 3' Nod1 mmu-miR-871 beg:548 end:568 pic:3' GTACTGACCGTGATTAGACTTAT 5'& .|||. | ||||.|| &5' -----TTGGTTCGGTTCTGGAT- 3' Nod1 mmu-miR-871 beg:426 end:449 pic:3' GTACTGACCGTGATT---AGACTTAT 5'& ||||| |||. |||||.| &5' --TGACT-GCATGGTTATTCTGAGT- 3' Nod1 mmu-miR-874 beg:227 end:248 pic:3' AGCCAGGGAGCC-CGG---TCCCGTC 5'& ||| ||| |||||| &5' -------CTCAAAGCCAGCAGGGCA- 3' Nod1 mmu-miR-877 beg:439 end:463 pic:3' GGGACGCGGTAG--AGGAGATG 5'& .||| |.| || ||||||.| &5' -TCTGAGTCCTCCTTCCTCTGC 3' Nod1 mmu-miR-882 beg:766 end:779 pic:3' TGATTACGCGATTGAGAGAGGA 5'& |||||||||| &5' -----------AACTCTCTCC- 3' Nod1 mmu-miR-93star beg:55 end:71 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& |||| || ||||||| &5' ------GTGC-AG-TCAGCAG- 3' Nod1 mmu-miR-98 beg:727 end:748 pic:3' TTGTTA-TGTTGAATGATGGAGT 5'& |.||. | .|| |.||||| &5' AGCAGGCATGGCT---TGCCTCA 3' Nod1 mmu-miR-1951 beg:265 end:282 pic:3' ATCGGTGTGGTCAGAGGTGATG 5'& | ||. ||||||| &5' ---CTGCATA----TCCACTA- 3' Nod1 mmu-miR-466h beg:125 end:140 pic:3' ATGTGTGTTCGTGT-ACGTGTGT 5'& |||| ||||||| &5' ----------CACAGTGCACAC- 3' Nod1 mmu-miR-133astar beg:660 end:678 pic:3' TAAACCAAGGTAAAATGGTCG 5'& ||. |||||||||. &5' ------TTTTTTTTTACCAGT 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Nod1 RAID00010673 mmu-miR-370-3p miRNA MIMAT0001095 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID00047098 mmu-miR-215-5p miRNA MIMAT0000904 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID00093533 mmu-miR-1941-5p miRNA MIMAT0009405 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID00117553 mmu-miR-6715-5p miRNA MIMAT0029876 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID00203875 mmu-miR-320-3p miRNA MIMAT0000666 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID00559126 mmu-miR-377-3p miRNA MIMAT0000741 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID00561184 mmu-miR-486b-3p miRNA MIMAT0014944 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID00625912 mmu-miR-874-3p miRNA MIMAT0004853 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID00638453 mmu-miR-7688-3p miRNA MIMAT0029907 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID00825503 mmu-miR-149-5p miRNA MIMAT0000159 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID00991192 mmu-miR-3102-5p miRNA MIMAT0014933 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID01093932 mmu-miR-702-5p miRNA MIMAT0022931 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID01203714 mmu-miR-1904 miRNA MIMAT0007874 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID01416407 mmu-miR-7022-5p miRNA MIMAT0027948 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID01444680 mmu-miR-7087-3p miRNA MIMAT0028081 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID01499206 mmu-miR-543-3p miRNA MIMAT0003168 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID01524898 mmu-miR-486a-5p miRNA MIMAT0003130 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID01532549 mmu-miR-6372 miRNA MIMAT0025116 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID01616727 mmu-miR-134-5p miRNA MIMAT0000146 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID01751579 mmu-miR-298-5p miRNA MIMAT0000376 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID01831957 mmu-miR-1192 miRNA MIMAT0005850 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02025329 mmu-miR-6418-3p miRNA MIMAT0025174 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02043408 mmu-miR-485-5p miRNA MIMAT0003128 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02068114 mmu-miR-7211-5p miRNA MIMAT0028390 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02182655 mmu-miR-185-5p miRNA MIMAT0000214 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02395101 mmu-miR-6985-3p miRNA MIMAT0027873 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02445098 mmu-miR-9769-5p miRNA MIMAT0036461 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02475489 mmu-miR-5113 miRNA MIMAT0020621 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02502866 mmu-miR-6969-5p miRNA MIMAT0027840 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02591855 mmu-miR-495-3p miRNA MIMAT0003456 Nod1 mRNA 107607 Prediction 0.2202 Nod1 RAID02601964 mmu-miR-193b-3p miRNA MIMAT0004859 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02620173 mmu-miR-486a-3p miRNA MIMAT0017206 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02654684 mmu-miR-9769-3p miRNA MIMAT0036462 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02668588 mmu-miR-673-5p miRNA MIMAT0003739 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02696198 mmu-miR-192-5p miRNA MIMAT0000517 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID02962738 mmu-miR-497a-5p miRNA MIMAT0003453 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID03045741 mmu-miR-383-5p miRNA MIMAT0000748 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID03050288 mmu-miR-7a-1-3p miRNA MIMAT0004670 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID03120017 mmu-miR-7050-3p miRNA MIMAT0028005 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID03133670 mmu-miR-1933-3p miRNA MIMAT0009397 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID03163617 mmu-miR-7056-5p miRNA MIMAT0028016 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID03331373 mmu-miR-193a-3p miRNA MIMAT0000223 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID03561492 mmu-miR-682 miRNA MIMAT0003459 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID03568340 mmu-miR-7047-3p miRNA MIMAT0027999 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID03669172 mmu-miR-7652-3p miRNA MIMAT0029811 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID03796436 mmu-miR-882 miRNA MIMAT0004847 Nod1 mRNA 107607 Prediction 0.1828 Nod1 RAID03866459 mmu-miR-590-3p miRNA MIMAT0004896 Nod1 mRNA 107607 Prediction 0.1828