DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0011221 mmu-miR-2145 14109 Fau uuGGUCCGGGCUGGGACGa |:| || ||||||| ucCUAUUGCC-ACCCUGCc 2 18 2 19 [mm9:19:6059476-6059493:+] 0.6851 143 7 -18.07 -0.6077 MIMAT0000140 mmu-miR-128 14109 Fau uuucucuggccaaGUGACACu ||||||| augcuaauaaagcCACUGUGu 2 9 20 40 [mm9:19:6059494-6059514:+] 0.6247 140 7 -11.37 -0.4528

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G063133 Fau Mus musculus 14109

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Fau mmu-miR-2145 beg:0 end:19 pic:3' TTGGTC--CGGGCTGGGACGA 5'& || ||| ||||||| &5' --CCTATTGCC--ACCCTGC- 3' Fau mmu-miR-128 beg:30 end:40 pic:3' TTTCTCTGGCCAAGTGACACT 5'& ||||||| &5' -------------CACTGTG- 3' Fau mmu-miR-876-3p beg:18 end:38 pic:3' ACTTAATGAAACATTTGGTGAT 5'& |.|| ||.|||||. &5' -----TGCTAATAAAGCCACTG 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Fau; Gm9843; mCG_11741 mmu-miR-140 14 39 -GAUGGUAUCCC-AUUUUGGUGAC- ||:||||: ||||:|||||| CCUGCCAUGCUAAUAAAGCCACUGU Fau; Gm9843; mCG_11741 mmu-miR-183 6 24 GUCACUUAAGAUGGUC--ACGGUAU- :|:||| ||||||: --------AUUGCCACCCUGCCAUGC Fau; Gm9843; mCG_11741 mmu-miR-27a 16 41 -CGCCUUGAA----UCGGUGACACUU || :|| |||||||||| UGCCAUGCUAAUAAAGCCACUGUGU- Fau; Gm9843; mCG_11741 mmu-miR-27b 16 41 -CGUCUUGAA----UCGGUGACACUU || :|| |||||||||| UGCCAUGCUAAUAAAGCCACUGUGU- Fau; Gm9843; mCG_11741 mmu-miR-34a 11 40 UUGU--UGGU-CGAU----UCUGUGACGGU || :||| |||| || |||||: CACCCUGCCAUGCUAAUAAAGCCACUGUG- Fau; Gm9843; mCG_11741 mmu-miR-449 16 40 -UGGU-CGAUUGUUAU-GUGACGGU :||| |||||:|| |||||: UGCCAUGCUAAUAAAGCCACUGUG- Fau; Gm9843; mCG_11741 mmu-miR-449b 17 40 -GGU-CGAUCGUUACG-UGACGGA ||| |||| :|| || ||||: GCCAUGCUAAUAAAGCCACUGUG- Fau; Gm9843; mCG_11741 mmu-miR-546 1 16 CUGAGGC--ACGGUGGUA ||| ||||||| --GUCCUAUUGCCACCC- Fau; Gm9843; mCG_11741 mmu-miR-685 7 23 CACGGAGUGGAGUCGGUAACU |||| ||| | ||||| UUGCC--ACC-CUGCCAUG-- Fau; Gm9843; mCG_11741 mmu-miR-709 1 21 -AGGAGGACGGA--GACGGAGG |||| :|||| ||||| GUCCUAUUGCCACCCUGCCA-- Fau; Gm9843; mCG_11741 mmu-miR-744 1 20 CGACAAUCGGGAUC-----GGGGCGU |:|||| |||:|| -------GUCCUAUUGCCACCCUGCC Fau; Gm9843; mCG_11741 mmu-miR-761 1 25 ACACAGUCAAA--GUGGGACG--ACG- ||| |||||||| ||| ---GUCCUAUUGCCACCCUGCCAUGCU Fau; Gm9843; mCG_11741 mmu-miR-762 1 21 CGAGACAGGGC--CGG-GGU-CGGGG ||||: ||| || ||| -----GUCCUAUUGCCACCCUGCCA- Fau; Gm9843; mCG_11741 mmu-miR-140 15 37 GAUGGUAU-CCCAUUUUGGUGAC ||:||||: ||||:|||||| CTGCCATGCTAATAAAGCCACTG Fau; Gm9843; mCG_11741 mmu-miR-183 1 22 gucacuUAA-GAUGGUCACGGUAu ||| | ||| |||||| -gtcctATTGCCACC-CTGCCATg Fau; Gm9843; mCG_11741 mmu-miR-27a 22 41 CGCCUUGAAUCGGUGACACuu || ||: |||||||||| GC-TAATAAAGCCACTGTGtc Fau; Gm9843; mCG_11741 mmu-miR-27b 22 41 CGUCUUGAAUCGGUGACACuu || ||: |||||||||| GC-TAATAAAGCCACTGTGtc Fau; Gm9843; mCG_11741 mmu-miR-34a 1 20 uuguuGGUCGAUUCUGUGACGGU || :|: || |||||| ---gtCCTATTGCCACCCTGCCA Fau; Gm9843; mCG_11741 mmu-miR-449 17 43 uGGU-CGAUUGUUAU-GUGAC---GGU ||| |||||:|| : ||||| ||| gCCATGCTAATAAAGCCACTGTGTCCA Fau; Gm9843; mCG_11741 mmu-miR-449b 18 40 GGU-CGAUCGUUAC-GUGACgga ||| |||| :|| | ||||| CCATGCTAATAAAGCCACTGtgt Fau; Gm9843; mCG_11741 mmu-miR-546 1 16 cugAGG--CACGGUGGua ||| ||||||| --gTCCTATTGCCACCct Fau; Gm9843; mCG_11741 mmu-miR-685 15 38 cACGGAGUGG--A-GUCGGUAACu |||| ::|: | ||||| || cTGCCATGCTAATAAAGCCACTGt Fau; Gm9843; mCG_11741 mmu-miR-709 2 22 AGGAGGACG--GAGACGGagg |||| :||| | ||||| TCCTATTGCCACCCTGCCatg Fau; Gm9843; mCG_11741 mmu-miR-744 3 19 cGACAAUCGGGAUCGGGGCGu || || ||| |||:|| cCTATT-GCCA---CCCTGCc Fau; Gm9843; mCG_11741 mmu-miR-762 1 21 cgagaCAGG---GCCG-GGGUCGGgg |||| :| | ||| ||| -----GTCCTATTGCCACCCTGCCat

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Fau RAID02782143 mmu-miR-128-3p miRNA MIMAT0000140 Fau mRNA 14109 Prediction 0.1828